Citrus Sinensis ID: 036704
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFI1 | 768 | Pentatricopeptide repeat- | yes | no | 0.910 | 0.751 | 0.508 | 0.0 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.843 | 0.767 | 0.339 | 1e-102 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.823 | 0.625 | 0.354 | 1e-100 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.883 | 0.658 | 0.325 | 9e-95 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.861 | 0.734 | 0.340 | 2e-94 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.817 | 0.486 | 0.329 | 3e-92 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.903 | 0.557 | 0.315 | 3e-91 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.798 | 0.707 | 0.327 | 8e-91 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.895 | 0.652 | 0.318 | 9e-91 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.916 | 0.683 | 0.319 | 1e-90 |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/688 (50%), Positives = 448/688 (65%), Gaps = 111/688 (16%)
Query: 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILS 108
D +SLCK N Y EAL AFDF Q N++F+IR TY LI ACSS RSL GRK+HDHIL+
Sbjct: 36 DHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILN 95
Query: 109 SKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL 168
S C+ D +L+NHIL+MYGKCGSL DAR VFD MP+RN+VS+T++I G SQNGQ AI L
Sbjct: 96 SNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRL 155
Query: 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------- 215
Y++MLQ L+PDQF FGSII+AC+ VGLG+QLHA VIK E SH
Sbjct: 156 YLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215
Query: 216 ------------------LISQNALIAMYTKFDRILDA---------WNVF--------- 239
LIS +++IA +++ +A + VF
Sbjct: 216 FNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 275
Query: 240 -----SSIARKDITSW-----------GSMIDGFSKLDF---------ARTVFNEMESPN 274
SS+ R D S G+ I G S D AR VF+++E P+
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334
ASWN IIAG+A+ A+EA+S+FS+M IPD +++RSLLCA T P++L QGMQIHS
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395
Query: 335 YIIKKGFYSNVPVCNAIL------------------------------------QH-QAG 357
YIIK GF +++ VCN++L QH Q
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPV 455
Query: 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417
E+ RLF LML S+ +PDHIT +++ C ++SL++G+Q+HCY +KTGLA + F+ NGL+
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLI 515
Query: 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV 477
DMY KCGSLG AR +F+ M++ DVVSWS+LIVGYAQ G GEEAL LF+ M+S+G+ PNHV
Sbjct: 516 DMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHV 575
Query: 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537
T VGVLTACSHVGLVEEGL+LY MQ E+GI PT+E SCVVDLLARAGR++EAE FI++
Sbjct: 576 TFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDE 635
Query: 538 MAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597
M + D+VVWK+LL++CKT GNV + ++AAENILKIDP NS A VLLC+++ASSG WE
Sbjct: 636 MKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Query: 598 ARLMGSMKERGVRKVPGQSWIEIQTKIH 625
A L SMK+ V+K+PGQSWIEI+ KIH
Sbjct: 696 ALLRSSMKKHDVKKIPGQSWIEIEDKIH 723
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/606 (33%), Positives = 320/606 (52%), Gaps = 71/606 (11%)
Query: 27 LLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADL 86
LD+A + S R W+ + S + + EAL F + F + ++A +
Sbjct: 101 FLDEADSLFRSMPERDQCTWN-SMVSGFAQHDRCEEALCYFAMMHKE-GFVLNEYSFASV 158
Query: 87 ISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNV 146
+SACS L + G +VH I S D + + +++MY KCG++ DA+ VFDEM RNV
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206
VSW ++I QNG A++++ ML+S + PD+ T S+I AC+ L + +G+++H
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 207 VIKSEH-GSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFART 265
V+K++ + +I NA + MY K RI +A R
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEA----------------------------RF 310
Query: 266 VFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325
+F+ M N+ + ++I+G A ++ A +F++M +R ++
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS----------------- 353
Query: 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGAC 385
N + + E LF L+ P H +F +++ AC
Sbjct: 354 -----------------WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKAC 396
Query: 386 AAMASLEMGTQLHCYIMKTGLAL------DVFVMNGLMDMYVKCGSLGSARELFNFMEDP 439
A +A L +G Q H +++K G D+FV N L+DMYVKCG + +F M +
Sbjct: 397 ADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456
Query: 440 DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499
D VSW+++I+G+AQ G G EAL+LFR M SG +P+H+T++GVL+AC H G VEEG +
Sbjct: 457 DCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYF 516
Query: 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGN 559
M ++G+ P R+ +C+VDLL RAG + EA+ I +M D V+W SLLA+CK H N
Sbjct: 517 SSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRN 576
Query: 560 VDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIE 619
+ +GK AE +L+++P+NS VLL N+YA GKWE+V + SM++ GV K PG SWI+
Sbjct: 577 ITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIK 636
Query: 620 IQTKIH 625
IQ H
Sbjct: 637 IQGHDH 642
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/586 (35%), Positives = 317/586 (54%), Gaps = 64/586 (10%)
Query: 78 IRPSTY--ADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDAR 135
+ P Y + ++SACS L L+ G+++H HIL + DA L N +++ Y KCG + A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 136 MVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC 195
+F+ MP +N++SWT +++G QN A+EL+ M + GL PD + SI+ +C+ L
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364
Query: 196 CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMID 255
+G G Q+HA+ IK+ G+ N+LI MY K D + DA VF A D+ + +MI+
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424
Query: 256 GFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRS 315
G+S+L W +EA+++F +M R + P LT S
Sbjct: 425 GYSRLG--------------TQWEL-----------HEALNIFRDMRFRLIRPSLLTFVS 459
Query: 316 LLCACTSPLSLYQGMQIHSYIIKKGF-------------YSN------------------ 344
LL A S SL QIH + K G YSN
Sbjct: 460 LLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD 519
Query: 345 VPVCNAIL-----QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHC 399
+ + N++ Q + E LF + S+ +PD TF +++ A +AS+++G + HC
Sbjct: 520 LVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHC 579
Query: 400 YIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEE 459
++K GL + ++ N L+DMY KCGS A + F+ DVV W+S+I YA G G++
Sbjct: 580 QLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKK 639
Query: 460 ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519
AL++ +M S G+ PN++T VGVL+ACSH GLVE+GL+ + +M +GI P E C+V
Sbjct: 640 ALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMV 698
Query: 520 DLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579
LL RAGR+++A + I +M +VW+SLL+ C GNV++ + AAE + DP +S
Sbjct: 699 SLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSG 758
Query: 580 ALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
+ +L NIYAS G W E ++ MK GV K PG+SWI I ++H
Sbjct: 759 SFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 222/683 (32%), Positives = 345/683 (50%), Gaps = 123/683 (18%)
Query: 63 ALVAFDFLQNNTNFRIRP---STYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHN 119
A+ A D + + IRP T++ L+ +C R +LG+ VH ++ +PD+VL+N
Sbjct: 45 AVSALDLMARDG---IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYN 101
Query: 120 HILNMYGKCGSLEDARMVFDEMP---QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSG 176
++++Y K G A VF+ M +R+VVSW+AM+A NG+E AI+++V+ L+ G
Sbjct: 102 SLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELG 161
Query: 177 LMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEH-------GSHLIS-----QNALIA 224
L+P+ + + ++IRACS VG+GR ++K+ H G LI +N+
Sbjct: 162 LVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFEN 221
Query: 225 MYTKFDRILD----AW------------------------------------NVFSSIAR 244
Y FD++ + W +VFS+ A
Sbjct: 222 AYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281
Query: 245 -------KDITSWG-----------SMIDGFSK------LDFARTVFNEMESPNLASWNT 280
K + SW S++D ++K +D R VF+ ME ++ SW
Sbjct: 282 LENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341
Query: 281 IIAG-VASCSNANEAMSLFSEMGDRELI-PDGLTVRSLLCACTSPLSLYQGMQIHSYIIK 338
+I G + +C+ A EA++LFSEM + + P+ T S AC + G Q+ K
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401
Query: 339 KGFYSNVPVCNAILQ-----------HQAGE-------------------------LFRL 362
+G SN V N+++ +A E F+L
Sbjct: 402 RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461
Query: 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK 422
S + + TF ++ A + S+ G Q+H ++K GL+ + V N L+ MY K
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521
Query: 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGV 482
CGS+ +A +FNFME+ +V+SW+S+I G+A+ G L+ F +M GV+PN VT V +
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAI 581
Query: 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD 542
L+ACSHVGLV EG + + M ++ I P E +C+VDLL RAG + +A +FIN M F
Sbjct: 582 LSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQA 641
Query: 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602
D++VW++ L +C+ H N ++GK AA IL++DP AA + L NIYA +GKWEE +
Sbjct: 642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRR 701
Query: 603 SMKERGVRKVPGQSWIEIQTKIH 625
MKER + K G SWIE+ KIH
Sbjct: 702 KMKERNLVKEGGCSWIEVGDKIH 724
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 202/593 (34%), Positives = 324/593 (54%), Gaps = 47/593 (7%)
Query: 80 PST--YADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMV 137
P T Y +++ A + ++S R+V D I QP+ N++L Y K G + +
Sbjct: 39 PETFLYNNIVHAYALMKSSTYARRVFDRI----PQPNLFSWNNLLLAYSKAGLISEMEST 94
Query: 138 FDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS-GLMPDQFTFGSIIRACSGLCC 196
F+++P R+ V+W +I G S +G AA++ Y M++ + T ++++ S
Sbjct: 95 FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154
Query: 197 VGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDG 256
V LG+Q+H VIK S+L+ + L+ MY I DA VF + ++ + S++ G
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214
Query: 257 F---SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTV 313
++ A +F ME ++ SW +I G+A A EA+ F EM + L D
Sbjct: 215 LLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPF 273
Query: 314 RSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ--------HQAGELF----- 360
S+L AC ++ +G QIH+ II+ F ++ V +A++ H A +F
Sbjct: 274 GSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQ 333
Query: 361 -----------------------RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQL 397
++F M S PDH T + ACA ++SLE G+Q
Sbjct: 334 KNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQF 393
Query: 398 HCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG 457
H + +GL V V N L+ +Y KCG + + LFN M D VSW++++ YAQFG
Sbjct: 394 HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRA 453
Query: 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517
E ++LF +M G++P+ VTL GV++ACS GLVE+G + +++M +EYGI+P+ SC
Sbjct: 454 VETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSC 513
Query: 518 VVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577
++DL +R+GR+ EA FIN M F D + W +LL++C+ GN+++GK AAE+++++DP +
Sbjct: 514 MIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHH 573
Query: 578 SAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIHASGND 630
A LL +IYAS GKW+ VA+L M+E+ V+K PGQSWI+ + K+H+ D
Sbjct: 574 PAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSAD 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 192/582 (32%), Positives = 304/582 (52%), Gaps = 64/582 (10%)
Query: 81 STYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDE 140
+T A L+ ACS+ +L G+++H + + + +LN+Y KC +E A F E
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449
Query: 141 MPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG 200
NVV W M+ + ++ QM ++P+Q+T+ SI++ C L + LG
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509
Query: 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL 260
Q+H+ +IK+ + + LI MY K ++ AW++ A KD+ S
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS----------- 558
Query: 261 DFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC 320
W T+IAG + ++A++ F +M DR + D + + + + AC
Sbjct: 559 -----------------WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC 601
Query: 321 TSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-----------------QHQAG------ 357
+L +G QIH+ GF S++P NA++ Q +AG
Sbjct: 602 AGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 661
Query: 358 -------------ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT 404
E R+F M ++ TF + A + A+++ G Q+H I KT
Sbjct: 662 ALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT 721
Query: 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLF 464
G + V N L+ MY KCGS+ A + F + + VSW+++I Y++ G G EAL F
Sbjct: 722 GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSF 781
Query: 465 RRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524
+M S VRPNHVTLVGVL+ACSH+GLV++G+ + M +EYG+ P E CVVD+L R
Sbjct: 782 DQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTR 841
Query: 525 AGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584
AG + A++FI +M D +VW++LL++C H N+++G+ AA ++L+++P +SA VLL
Sbjct: 842 AGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 901
Query: 585 CNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIHA 626
N+YA S KW+ MKE+GV+K PGQSWIE++ IH+
Sbjct: 902 SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 203/643 (31%), Positives = 326/643 (50%), Gaps = 70/643 (10%)
Query: 22 FELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPS 81
+ C ++ A +V ++ + D W+ + N + ++ ++ + I
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGY--AHNGESHKVMELFMDMKSSGYNIDDF 429
Query: 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141
T+ L+S C++ L++G + H I+ K + + N +++MY KCG+LEDAR +F+ M
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR 201
R+ V+W +I Q+ E+ A +L+ +M G++ D S ++AC+ + + G+
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549
Query: 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLD 261
Q+H +K L + ++LI MY+K I DA
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDA-------------------------- 583
Query: 262 FARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321
R VF+ + ++ S N +IAG S +N EA+ LF EM R + P +T +++ AC
Sbjct: 584 --RKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACH 640
Query: 322 SPLSLYQGMQIHSYIIKKGF---------------------------YSNVPVCNAIL-- 352
P SL G Q H I K+GF +S + +I+
Sbjct: 641 KPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLW 700
Query: 353 ------QHQAG---ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMK 403
Q G E + + M PD TF V+ C+ ++SL G +H I
Sbjct: 701 TGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFH 760
Query: 404 TGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-PDVVSWSSLIVGYAQFGCGEEALK 462
LD N L+DMY KCG + + ++F+ M +VVSW+SLI GYA+ G E+ALK
Sbjct: 761 LAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALK 820
Query: 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522
+F MR S + P+ +T +GVLTACSH G V +G +++ +M +YGI + +C+VDLL
Sbjct: 821 IFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLL 880
Query: 523 ARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582
R G + EA+DFI D +W SLL +C+ HG+ G+ +AE +++++P NS+A V
Sbjct: 881 GRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYV 940
Query: 583 LLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
LL NIYAS G WE+ L M++RGV+KVPG SWI+++ + H
Sbjct: 941 LLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTH 983
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 180/550 (32%), Positives = 301/550 (54%), Gaps = 44/550 (8%)
Query: 121 ILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPD 180
++++Y L +A ++F + V++W ++I + + A+ +V+M SG PD
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 181 QFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKF---DRILDAWN 237
F S++++C+ + + G +H +++ L + NAL+ MY K + N
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 238 VFSSIARKDITSWGSMIDGFS-----KLDFARTVFNEMESPNLASWNTIIAGVASCSNAN 292
VF + ++ S + + +D R VF M ++ S+NTIIAG A
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYE 224
Query: 293 EAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352
+A+ + EMG +L PD T+ S+L + + + +G +IH Y+I+KG S+V + ++++
Sbjct: 225 DALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLV 284
Query: 353 QHQA------------------------------------GELFRLFSLMLASQTKPDHI 376
A E RLF M+ ++ KP +
Sbjct: 285 DMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAV 344
Query: 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436
F+ V+ ACA +A+L +G QLH Y+++ G ++F+ + L+DMY KCG++ +AR++F+ M
Sbjct: 345 AFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM 404
Query: 437 EDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496
D VSW+++I+G+A G G EA+ LF M+ GV+PN V V VLTACSHVGLV+E
Sbjct: 405 NVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464
Query: 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKT 556
+ M YG+ E + V DLL RAG++ EA +FI++M + VW +LL+SC
Sbjct: 465 GYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSV 524
Query: 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQS 616
H N+++ ++ AE I +D N A VL+CN+YAS+G+W+E+A+L M+++G+RK P S
Sbjct: 525 HKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACS 584
Query: 617 WIEIQTKIHA 626
WIE++ K H
Sbjct: 585 WIEMKNKTHG 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 204/641 (31%), Positives = 330/641 (51%), Gaps = 73/641 (11%)
Query: 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYA 84
C L +A V D W+ L + L K ++ ++ F + + + + T++
Sbjct: 142 CGDLKEASRVFDEVKIEKALFWNI-LMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFS 199
Query: 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR 144
+ + SSLRS+ G ++H IL S + N ++ Y K ++ AR VFDEM +R
Sbjct: 200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLH 204
+V+SW ++I G NG + ++VQML SG+ D T S+ C+ + LGR +H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 205 AHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK---LD 261
+ +K A +++ DR + +++D +SK LD
Sbjct: 320 SIGVK--------------ACFSREDRFCN-----------------TLLDMYSKCGDLD 348
Query: 262 FARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321
A+ VF EM ++ S+ ++IAG A A EA+ LF EM + + PD TV ++L C
Sbjct: 349 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408
Query: 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA------------------------- 356
L +G ++H +I + ++ V NA++ A
Sbjct: 409 RYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 468
Query: 357 -----------GELFRLFSLMLASQT-KPDHITFNDVMGACAAMASLEMGTQLHCYIMKT 404
E LF+L+L + PD T V+ ACA++++ + G ++H YIM+
Sbjct: 469 IIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN 528
Query: 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLF 464
G D V N L+DMY KCG+L A LF+ + D+VSW+ +I GY G G+EA+ LF
Sbjct: 529 GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 465 RRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524
+MR +G+ + ++ V +L ACSH GLV+EG + + IM++E I PT E +C+VD+LAR
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Query: 525 AGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584
G + +A FI M D +W +LL C+ H +V + ++ AE + +++P N+ VL+
Sbjct: 649 TGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLM 708
Query: 585 CNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
NIYA + KWE+V RL + +RG+RK PG SWIEI+ +++
Sbjct: 709 ANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 206/645 (31%), Positives = 337/645 (52%), Gaps = 64/645 (9%)
Query: 37 SFLRRFDDI------WDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC 90
S LRRF W+ L S N+ L F L ++ ++ T+ + AC
Sbjct: 80 SLLRRFPPSDAGVYHWN-SLIRSYGDNGCANKCLYLFG-LMHSLSWTPDNYTFPFVFKAC 137
Query: 91 SSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWT 150
+ S++ G H L + + + N ++ MY +C SL DAR VFDEM +VVSW
Sbjct: 138 GEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWN 197
Query: 151 AMIAGCSQNGQENAAIELYVQMLQS-GLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK 209
++I ++ G+ A+E++ +M G PD T +++ C+ L LG+QLH +
Sbjct: 198 SIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVT 257
Query: 210 SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL---DFARTV 266
SE ++ N L+ MY K + +A VFS+++ KD+ SW +M+ G+S++ + A +
Sbjct: 258 SEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRL 317
Query: 267 FNEMESP----NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322
F +M+ ++ +W+ I+G A EA+ + +M + P+ +T+ S+L C S
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377
Query: 323 PLSLYQGMQIHSYIIK-------KGFYSNVPVCNAIL----------------------- 352
+L G +IH Y IK G V N ++
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437
Query: 353 --------------QH-QAGELFRLFSLMLAS--QTKPDHITFNDVMGACAAMASLEMGT 395
QH A + L S M QT+P+ T + + ACA++A+L +G
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497
Query: 396 QLHCYIMKTGL-ALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQF 454
Q+H Y ++ A+ +FV N L+DMY KCGS+ AR +F+ M + V+W+SL+ GY
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMH 557
Query: 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514
G GEEAL +F MR G + + VTL+ VL ACSH G++++G++ + M+ +G+ P E
Sbjct: 558 GYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEH 617
Query: 515 RSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574
+C+VDLL RAGR++ A I +M + VVW + L+ C+ HG V++G+ AAE I ++
Sbjct: 618 YACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELA 677
Query: 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIE 619
+ + LL N+YA++G+W++V R+ M+ +GV+K PG SW+E
Sbjct: 678 SNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| 359481513 | 755 | PREDICTED: pentatricopeptide repeat-cont | 0.910 | 0.764 | 0.539 | 0.0 | |
| 15231798 | 768 | pentatricopeptide repeat-containing prot | 0.910 | 0.751 | 0.508 | 0.0 | |
| 297816638 | 769 | pentatricopeptide repeat-containing prot | 0.905 | 0.746 | 0.505 | 0.0 | |
| 356503704 | 855 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.669 | 0.491 | 1e-179 | |
| 356570738 | 777 | PREDICTED: pentatricopeptide repeat-cont | 0.900 | 0.734 | 0.491 | 1e-178 | |
| 357510605 | 887 | Pentatricopeptide repeat-containing prot | 0.902 | 0.644 | 0.465 | 1e-169 | |
| 147784524 | 763 | hypothetical protein VITISV_032420 [Viti | 0.823 | 0.684 | 0.5 | 1e-165 | |
| 297741566 | 493 | unnamed protein product [Vitis vinifera] | 0.711 | 0.914 | 0.600 | 1e-161 | |
| 449440387 | 792 | PREDICTED: pentatricopeptide repeat-cont | 0.813 | 0.651 | 0.482 | 1e-152 | |
| 449518693 | 792 | PREDICTED: pentatricopeptide repeat-cont | 0.813 | 0.651 | 0.482 | 1e-152 |
| >gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/688 (53%), Positives = 454/688 (65%), Gaps = 111/688 (16%)
Query: 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILS 108
+ +SLCKQ L+NEA+ AF+FLQ T F + STYA LISACS LRSL+ G+K+HDH+L
Sbjct: 32 EYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLK 91
Query: 109 SKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL 168
SK PD L NHILNMYGKC SL+DA+ VFD MP+RNVVSWT++IAG SQNGQ A+E
Sbjct: 92 SKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEF 151
Query: 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------- 215
Y QMLQSG+MPDQFTFGSII+ACS L +GLGRQLHAHV+KSE G+H
Sbjct: 152 YFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTK 211
Query: 216 ------------------LISQNALIAMYTKFDRILDAW--------------------N 237
LIS ++IA +++ L+A +
Sbjct: 212 SNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGS 271
Query: 238 VFSSIAR--------------------KDITSWGSMIDGFSK---LDFARTVFNEMESPN 274
VFS+ + +D+ + S+ D ++K L AR VF ++ P+
Sbjct: 272 VFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPD 331
Query: 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334
L +WN IIAG A +A EA++ FS+M + LIPD +TVRSLLCACTSP LYQGMQ+H
Sbjct: 332 LVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHG 391
Query: 335 YIIKKGFYSNVPVCNAIL-------------------------------------QHQAG 357
YI K G +VPVCN +L QA
Sbjct: 392 YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAE 451
Query: 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417
E+FRL LM SQ +PD+IT +V+GA A S+E+G Q+HCY +KTGL D V NGL+
Sbjct: 452 EVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLI 511
Query: 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV 477
D+Y KCGSL +A ++F+ M +PDVVSWSSLI+GYAQFG GEEALKLF+ MR V+PNHV
Sbjct: 512 DLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHV 571
Query: 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537
T VGVLTACSHVGLVEEG +LY M+ E+GI PTRE SC+VDLLARAG ++EAE FI+Q
Sbjct: 572 TFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQ 631
Query: 538 MAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597
MAFD DIVVWK+LLA+CKTHGNVDVGKRAAENILKIDP+NSAA VLLCNIYAS G WE+V
Sbjct: 632 MAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDV 691
Query: 598 ARLMGSMKERGVRKVPGQSWIEIQTKIH 625
ARL MK+RGVRKVPGQSWIE++ +IH
Sbjct: 692 ARLRSLMKQRGVRKVPGQSWIEVKDRIH 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; Flags: Precursor gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/688 (50%), Positives = 448/688 (65%), Gaps = 111/688 (16%)
Query: 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILS 108
D +SLCK N Y EAL AFDF Q N++F+IR TY LI ACSS RSL GRK+HDHIL+
Sbjct: 36 DHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILN 95
Query: 109 SKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL 168
S C+ D +L+NHIL+MYGKCGSL DAR VFD MP+RN+VS+T++I G SQNGQ AI L
Sbjct: 96 SNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRL 155
Query: 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------- 215
Y++MLQ L+PDQF FGSII+AC+ VGLG+QLHA VIK E SH
Sbjct: 156 YLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215
Query: 216 ------------------LISQNALIAMYTKFDRILDA---------WNVF--------- 239
LIS +++IA +++ +A + VF
Sbjct: 216 FNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 275
Query: 240 -----SSIARKDITSW-----------GSMIDGFSKLDF---------ARTVFNEMESPN 274
SS+ R D S G+ I G S D AR VF+++E P+
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334
ASWN IIAG+A+ A+EA+S+FS+M IPD +++RSLLCA T P++L QGMQIHS
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395
Query: 335 YIIKKGFYSNVPVCNAIL------------------------------------QH-QAG 357
YIIK GF +++ VCN++L QH Q
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPV 455
Query: 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417
E+ RLF LML S+ +PDHIT +++ C ++SL++G+Q+HCY +KTGLA + F+ NGL+
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLI 515
Query: 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV 477
DMY KCGSLG AR +F+ M++ DVVSWS+LIVGYAQ G GEEAL LF+ M+S+G+ PNHV
Sbjct: 516 DMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHV 575
Query: 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537
T VGVLTACSHVGLVEEGL+LY MQ E+GI PT+E SCVVDLLARAGR++EAE FI++
Sbjct: 576 TFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDE 635
Query: 538 MAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597
M + D+VVWK+LL++CKT GNV + ++AAENILKIDP NS A VLLC+++ASSG WE
Sbjct: 636 MKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Query: 598 ARLMGSMKERGVRKVPGQSWIEIQTKIH 625
A L SMK+ V+K+PGQSWIEI+ KIH
Sbjct: 696 ALLRSSMKKHDVKKIPGQSWIEIEDKIH 723
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/691 (50%), Positives = 450/691 (65%), Gaps = 117/691 (16%)
Query: 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILS 108
D +SLC+ + Y EAL AFDF Q N++F+IR TY LI ACSS RSL GRK+HDHIL+
Sbjct: 33 DHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILN 92
Query: 109 SKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL 168
S C+ D +L+NHIL+MYGKCGSL DAR VFD MP+RN+VS+T++I G SQNGQE AI L
Sbjct: 93 SNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITL 152
Query: 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------- 215
Y++MLQ+ L+PDQF FGSII+AC+ V LG+QLHA VIK E SH
Sbjct: 153 YLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVR 212
Query: 216 ------------------LISQNALIAMYTKFDRILDA---------WNVF--------- 239
LIS +++IA +++ +A + VF
Sbjct: 213 FNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 272
Query: 240 -----SSIARKDITSWGSMIDGF-----------------------SKLDFARTVFNEME 271
SS+ R D +GS I G LD AR VFN++E
Sbjct: 273 SLKACSSLLRPD---YGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIE 329
Query: 272 SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQ 331
P+ ASWN IIAG+A+ A+EA+S+FSEM + IPD +++RSLLCA T P++L QGMQ
Sbjct: 330 RPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQ 389
Query: 332 IHSYIIKKGFYSNVPVCNAIL------------------------------------QH- 354
IHS+IIK GF +++ VCN++L QH
Sbjct: 390 IHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHE 449
Query: 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMN 414
Q E+ RLF LML S+ +PDHIT +++ C ++SL++G+Q+HCY KTGL L+ F+ N
Sbjct: 450 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKN 509
Query: 415 GLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474
GL+DMY KCGSL AR +F+ M++ DVVSWS+LIVGYAQ G GEEAL LFR M+SSG+ P
Sbjct: 510 GLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEP 569
Query: 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534
NHVT VGVLTACSHVGLVEEGL+LY IMQ E+GI PT+E SCVVDLLARAG ++EAE F
Sbjct: 570 NHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERF 629
Query: 535 INQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594
I++M + D+VVWK+LL++CKT GNVD+ ++AAENILKIDP NS A VLLC+++ASSG W
Sbjct: 630 IDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNW 689
Query: 595 EEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
E+ A L SMK+ V+K+PGQSWI+++ KIH
Sbjct: 690 EDAALLRSSMKKHDVKKIPGQSWIDVEDKIH 720
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 336/683 (49%), Positives = 428/683 (62%), Gaps = 111/683 (16%)
Query: 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQP 113
+CKQ Y EAL F+F N++ ++ STY +LI AC+S+RSL+ G+K+HDHIL S CQP
Sbjct: 131 MCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQP 190
Query: 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173
D VL NHILNMYGKCGSL+DAR FD M RNVVSWT MI+G SQNGQEN AI +Y+QML
Sbjct: 191 DLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQML 250
Query: 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------------ 215
QSG PD TFGSII+AC + LGRQLH HVIKS + H
Sbjct: 251 QSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIV 310
Query: 216 -------------LISQNALIAMYTKFDRILDAWNVFSSIAR------------------ 244
LIS ++I +T+ ++A +F + R
Sbjct: 311 HASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSAC 370
Query: 245 ----------------------KDITSWGSMIDGFSKLDF---ARTVFNEMESPNLASWN 279
+++ + S+ D ++K F A F ++ESP+L SWN
Sbjct: 371 RSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWN 430
Query: 280 TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK 339
IIA + + NEA+ F +M L+PDG+T SLLCAC SP+++ QG QIHSYIIK
Sbjct: 431 AIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKI 490
Query: 340 GFYSNVPVCNAIL------------------------------------QH-QAGELFRL 362
G VCN++L QH QAGE+FRL
Sbjct: 491 GLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRL 550
Query: 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK 422
F LML S+ KPD+IT ++G CA +ASLE+G Q+HC+ +K+GL +DV V N L+DMY K
Sbjct: 551 FKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAK 610
Query: 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGV 482
CGSL AR++F ++PD+VSWSSLIVGYAQFG G EAL LFR M++ GV+PN VT +GV
Sbjct: 611 CGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGV 670
Query: 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD 542
L+ACSH+GLVEEG Y M+ E GI PTRE SC+VDLLARAG ++EAE+FI +M F+
Sbjct: 671 LSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNP 730
Query: 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602
DI +WK+LLASCKTHGNVD+ +RAAENILK+DP+NSAALVLL NI+AS G W+EVARL
Sbjct: 731 DITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRN 790
Query: 603 SMKERGVRKVPGQSWIEIQTKIH 625
MK+ GV+KVPGQSWI ++ +IH
Sbjct: 791 LMKQMGVQKVPGQSWIAVKDQIH 813
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 336/683 (49%), Positives = 431/683 (63%), Gaps = 112/683 (16%)
Query: 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQP 113
+CKQ Y EAL F+F N++ ++ PSTY +LI AC+++RSL+ G+++HDHIL S CQP
Sbjct: 54 MCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQP 113
Query: 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173
D VL NHILNMYGKCGSL+DAR FD M R+VVSWT MI+G SQNGQEN AI +Y+QML
Sbjct: 114 DLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQML 173
Query: 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------------ 215
+SG PDQ TFGSII+AC + LG QLH HVIKS + H
Sbjct: 174 RSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIA 233
Query: 216 -------------LISQNALIAMYTKFDRILDAWNVFSSIARKDI--------------- 247
LIS ++I +T+ ++A +F + R+ +
Sbjct: 234 HASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293
Query: 248 -----TSWGSMIDG--------------------FSKLDF---ARTVFNEMESPNLASWN 279
+G I G ++K F A+ F ++ESP+L SWN
Sbjct: 294 RSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWN 353
Query: 280 TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK 339
IIA +A+ S+ NEA+ F +M L+PD +T +LLCAC SP++L QGMQIHSYIIK
Sbjct: 354 AIIAALAN-SDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKM 412
Query: 340 GFYSNVPVCNAIL------------------------------------QH-QAGELFRL 362
G VCN++L QH Q GE FRL
Sbjct: 413 GLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRL 472
Query: 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK 422
F LML S+ KPD+IT ++G CA + SLE+G Q+HC+ +K+GL +DV V N L+DMY K
Sbjct: 473 FKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAK 532
Query: 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGV 482
CG L AR +F+ ++PD+VSWSSLIVGYAQFG G+EAL LFR MR+ GV+PN VT +GV
Sbjct: 533 CGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGV 592
Query: 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD 542
L+ACSH+GLVEEG LY M+ E GI PTRE SC+VDLLARAG ++EAE+FI + FD
Sbjct: 593 LSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDP 652
Query: 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602
DI +WK+LLASCKTHGNVD+ +RAAENILK+DP+NSAALVLL NI+AS+G W+EVARL
Sbjct: 653 DITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRN 712
Query: 603 SMKERGVRKVPGQSWIEIQTKIH 625
MK+ GV+KVPGQSWIE++ +IH
Sbjct: 713 LMKQMGVQKVPGQSWIEVKDQIH 735
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 318/683 (46%), Positives = 412/683 (60%), Gaps = 111/683 (16%)
Query: 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQP 113
LCKQ+ Y EAL AFDF N+N PSTY L+ AC++ RSL +K+HDH+L S QP
Sbjct: 133 LCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQP 192
Query: 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173
+L NH++NMYGKCGS++DAR VFD M NVVSWT+MI+G SQNGQ N AI +Y+QM
Sbjct: 193 SIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMT 252
Query: 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS----------------------E 211
+SG PDQ TFGS+I+AC + LGRQLHAHVIKS E
Sbjct: 253 RSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIE 312
Query: 212 HGSH---------LISQNALIAMYTKFDRILDAWNVFSSIAR------------------ 244
H S+ LIS +I Y + ++A +F + R
Sbjct: 313 HASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC 372
Query: 245 ----------------------KDITSWGSMIDGFSKLDF---ARTVFNEMESPNLASWN 279
+++ + S+ D ++K F A+ F ++++P++ SWN
Sbjct: 373 SSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432
Query: 280 TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK 339
IIA A +ANEA+ F +M L PD +T SLLC C SP+ L QG QIHSYI+K
Sbjct: 433 AIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKI 492
Query: 340 GFYSNVPVCNAIL-------------------------------------QHQAGELFRL 362
GF + VCN++L + Q GE FRL
Sbjct: 493 GFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRL 552
Query: 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK 422
+ M S KPD IT ++G CA + SL +G Q+HCY +K+GL LDV V NGL+DMY K
Sbjct: 553 YKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAK 612
Query: 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGV 482
CGSL AR++F+ ++ D+VSWSSLIVGYAQ G G EAL LFR M + GV+PN VT +G
Sbjct: 613 CGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGA 672
Query: 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD 542
L+ACSH+GLVEEG +LY+ M+ E+GI PTRE SC+VDLLARAG +HEAE FI + D
Sbjct: 673 LSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDA 732
Query: 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602
DI WK+LLA+CKTH NVD+ +R A NILK+DP+NSAA+V+LCNI+AS+G WEEVA+L
Sbjct: 733 DITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRK 792
Query: 603 SMKERGVRKVPGQSWIEIQTKIH 625
MK+ GV+KVPGQSWIE++ K H
Sbjct: 793 LMKQMGVQKVPGQSWIEVKDKFH 815
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 320/640 (50%), Positives = 402/640 (62%), Gaps = 118/640 (18%)
Query: 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILS 108
+ ++LCKQ L+NEA+ AF+FLQ T F + STYA LISACS LRSL+ GRK+HDH+L
Sbjct: 32 EYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLK 91
Query: 109 SKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL 168
SK PD L NHILNMYGKCGSL+DA+ VFD MP+RNVVSWT++IAG SQNGQ A+E
Sbjct: 92 SKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEF 151
Query: 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------- 215
Y QMLQSG+MPDQFTFGSII+ACS L +GLGRQLHAHV+KSE G+H
Sbjct: 152 YFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTK 211
Query: 216 ------------------LISQNALIAMYTKFDRILDAW--------------------N 237
LIS ++IA +++ L+A +
Sbjct: 212 SNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGS 271
Query: 238 VFSSIAR--------------------KDITSWGSMIDGFSK---LDFARTVFNEMESPN 274
VFS+ + +D+ + S+ D ++K L AR VF ++ P+
Sbjct: 272 VFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPD 331
Query: 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334
L +WN IIAG A +A EA++ FS+M + LIPD +TVRSLLCACTSP LYQGMQ+H
Sbjct: 332 LVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHG 391
Query: 335 YIIKKGFYSNVPVCNAIL-------------------------------------QHQAG 357
YI K G +VPVCN +L QA
Sbjct: 392 YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAE 451
Query: 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417
E+F L LM SQ +PD+IT +V+GA A S+E+G Q+HCY +KTGL D+ V NGL+
Sbjct: 452 EVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGLI 511
Query: 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV 477
D+Y KCGSL +AR++F+ + +PDVVSWSSLI+GYAQFG GEEALKLF+ MR V+PNHV
Sbjct: 512 DLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHV 571
Query: 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537
T VGVLTACSHVGLVEEG QLY M+ E+GI+PTRE SC+VDLLARAG ++EAE FI+Q
Sbjct: 572 TFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQ 631
Query: 538 MAFDDDIVVWKSLLASCKT-------HGNVDVGKRAAENI 570
MAFD DIVVWK+LLA+CK+ N+ V K+ E I
Sbjct: 632 MAFDPDIVVWKTLLAACKSVHQALARRTNLKVWKKQHEVI 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 295/491 (60%), Positives = 358/491 (72%), Gaps = 40/491 (8%)
Query: 141 MPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG 200
MP+RNVVSWT++IAG SQNGQ A+E Y QMLQSG+MPDQFTFGSII+ACS L +GLG
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60
Query: 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL 260
RQLHAHV+KSE G+H+I+QNALI+MYTK + I+DA +VFS +A +D+ SWGSMI GFS+L
Sbjct: 61 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120
Query: 261 DF---ARTVFNEM---ESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR 314
+ A F EM P+L +WN IIAG A +A+ F EM D ++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEM---RCNADLVSWN 176
Query: 315 SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPD 374
++L AC + QA E+FRL LM SQ +PD
Sbjct: 177 AILTAC------------------------------MRHDQAEEVFRLLKLMCISQHRPD 206
Query: 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFN 434
+IT +V+GA A S+E+G Q+HCY +KTGL D V NGL+D+Y KCGSL +A ++F+
Sbjct: 207 YITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFD 266
Query: 435 FMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494
M +PDVVSWSSLI+GYAQFG GEEALKLF+ MR V+PNHVT VGVLTACSHVGLVEE
Sbjct: 267 SMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEE 326
Query: 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASC 554
G +LY M+ E+GI PTRE SC+VDLLARAG ++EAE FI+QMAFD DIVVWK+LLA+C
Sbjct: 327 GWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAAC 386
Query: 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPG 614
KTHGNVDVGKRAAENILKIDP+NSAA VLLCNIYAS G WE+VARL MK+RGVRKVPG
Sbjct: 387 KTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPG 446
Query: 615 QSWIEIQTKIH 625
QSWIE++ +IH
Sbjct: 447 QSWIEVKDRIH 457
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/582 (48%), Positives = 377/582 (64%), Gaps = 66/582 (11%)
Query: 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141
T+ ++ +CS L +L R++H H+L S+ D + N +++MY K + DA VF +
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Query: 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQML-QSGLMPDQFTFGSIIRACSGLCCVGLG 200
++++SW +MIAG SQ G E A+ + +ML QS P++F FGS ACS L G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320
Query: 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL 260
RQ+H IK GS L + +L MY K GF L
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKC--------------------------GF--L 352
Query: 261 DFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC 320
+ ARTVF +E P+L +WN IIAG AS SNA E+ S FS+M L+P+ +TV SLLCAC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412
Query: 321 TSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL---------------------------- 352
+ P+ L G+Q+HSYI+K GF ++PVCN++L
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472
Query: 353 ---------QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMK 403
Q+QAGE+ RL LM AS+ KPDH+T +V+ + +AS E+G+Q+HC+IMK
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532
Query: 404 TGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKL 463
+GL LD+ V N L++MY KCGSL AR++F+ + +PD++SWSSLIVGYAQ GCG+EA +L
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592
Query: 464 FRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523
FR MR GV+PN +T VG+LTACSH+G+VEEGL+LYR MQ +Y I PT+E SC+VDLLA
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLA 652
Query: 524 RAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583
RAG + AEDFI QM F D+VVWK+LLA+CK HGN++VGKRAAEN+LKIDP+NSAA+V+
Sbjct: 653 RAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVM 712
Query: 584 LCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
LCNI+ASSG W++ ARL SM+ V KVPGQSWIEI+ K+H
Sbjct: 713 LCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVH 754
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/582 (48%), Positives = 377/582 (64%), Gaps = 66/582 (11%)
Query: 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141
T+ ++ +CS L +L R++H H+L S+ D + N +++MY K + DA VF +
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Query: 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQML-QSGLMPDQFTFGSIIRACSGLCCVGLG 200
++++SW +MIAG SQ G E A+ + +ML QS P++F FGS ACS L G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320
Query: 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL 260
RQ+H IK GS L + +L MY K GF L
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKC--------------------------GF--L 352
Query: 261 DFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC 320
+ ARTVF +E P+L +WN IIAG AS SNA E+ S FS+M L+P+ +TV SLLCAC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412
Query: 321 TSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL---------------------------- 352
+ P+ L G+Q+HSYI+K GF ++PVCN++L
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472
Query: 353 ---------QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMK 403
Q+QAGE+ RL LM AS+ KPDH+T +V+ + +AS E+G+Q+HC+IMK
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532
Query: 404 TGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKL 463
+GL LD+ V N L++MY KCGSL AR++F+ + +PD++SWSSLIVGYAQ GCG+EA +L
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592
Query: 464 FRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523
FR MR GV+PN +T VG+LTACSH+G+VEEGL+LYR MQ +Y I PT+E SC+VDLLA
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLA 652
Query: 524 RAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583
RAG + AEDFI QM F D+VVWK+LLA+CK HGN++VGKRAAEN+LKIDP+NSAA+V+
Sbjct: 653 RAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVM 712
Query: 584 LCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
LCNI+ASSG W++ ARL SM+ V KVPGQSWIEI+ K+H
Sbjct: 713 LCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVH 754
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.854 | 0.705 | 0.458 | 9.2e-123 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.925 | 0.703 | 0.337 | 6.1e-94 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.421 | 0.314 | 0.402 | 6.1e-90 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.433 | 0.308 | 0.404 | 2.1e-86 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.958 | 0.702 | 0.313 | 8.9e-86 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.856 | 0.510 | 0.339 | 9.1e-84 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.952 | 0.587 | 0.313 | 2.4e-83 | |
| TAIR|locus:2175653 | 677 | AT5G39350 "AT5G39350" [Arabido | 0.891 | 0.834 | 0.331 | 1.3e-82 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.903 | 0.575 | 0.332 | 7.4e-82 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.944 | 0.687 | 0.321 | 1.5e-81 |
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 254/554 (45%), Positives = 355/554 (64%)
Query: 83 YADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP 142
+ +I AC+S + LG+++H ++ + + N ++ MY + + DA VF +P
Sbjct: 171 FGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIP 230
Query: 143 QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM-PDQFTFGSIIRACSGLCCVGLGR 201
++++SW+++IAG SQ G E A+ +ML G+ P+++ FGS ++ACS L G
Sbjct: 231 MKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGS 290
Query: 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK-- 259
Q+H IKSE + I+ +L MY + + A VF I R D SW +I G +
Sbjct: 291 QIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNG 350
Query: 260 -LDFARTVFNEMES----PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTV- 313
D A +VF++M S P+ S +++ ++ M + S + + D LTV
Sbjct: 351 YADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLAD-LTVC 409
Query: 314 RSLLCACTSPLSLYQGMQI-HSYIIKKGFYSNVPVCNAILQH-QAGELFRLFSLMLASQT 371
SLL T LY + + S + A LQH Q E+ RLF LML S+
Sbjct: 410 NSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSEC 469
Query: 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431
+PDHIT +++ C ++SL++G+Q+HCY +KTGLA + F+ NGL+DMY KCGSLG AR
Sbjct: 470 EPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARR 529
Query: 432 LFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL 491
+F+ M++ DVVSWS+LIVGYAQ G GEEAL LF+ M+S+G+ PNHVT VGVLTACSHVGL
Sbjct: 530 IFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGL 589
Query: 492 VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLL 551
VEEGL+LY MQ E+GI PT+E SCVVDLLARAGR++EAE FI++M + D+VVWK+LL
Sbjct: 590 VEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLL 649
Query: 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRK 611
++CKT GNV + ++AAENILKIDP NS A VLLC+++ASSG WE A L SMK+ V+K
Sbjct: 650 SACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKK 709
Query: 612 VPGQSWIEIQTKIH 625
+PGQSWIEI+ KIH
Sbjct: 710 IPGQSWIEIEDKIH 723
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 208/617 (33%), Positives = 336/617 (54%)
Query: 28 LDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNL-YNEALVAFDFLQNNTNFRIRPSTY--A 84
+D A V D+ + W + S K Y + + +++N + P Y +
Sbjct: 199 IDYARLVFDALPEKSTVTWT-TMISGCVKMGRSYVSLQLFYQLMEDN----VVPDGYILS 253
Query: 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR 144
++SACS L L+ G+++H HIL + DA L N +++ Y KCG + A +F+ MP +
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK 313
Query: 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLH 204
N++SWT +++G QN A+EL+ M + GL PD + SI+ +C+ L +G G Q+H
Sbjct: 314 NIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVH 373
Query: 205 AHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDF-- 262
A+ IK+ G+ N+LI MY K D + DA VF A D+ + +MI+G+S+L
Sbjct: 374 AYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQW 433
Query: 263 ----ARTVFNEME----SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR 314
A +F +M P+L ++ +++ AS ++ + + M L D
Sbjct: 434 ELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGS 493
Query: 315 SLL-----CACTSPLSL-YQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368
+L+ C C L + M++ +I ++ + Q + E LF +
Sbjct: 494 ALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGY-----VQQSENEEALNLFLELQL 548
Query: 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428
S+ +PD TF +++ A +AS+++G + HC ++K GL + ++ N L+DMY KCGS
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPED 608
Query: 429 ARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488
A + F+ DVV W+S+I YA G G++AL++ +M S G+ PN++T VGVL+ACSH
Sbjct: 609 AHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSH 668
Query: 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWK 548
GLVE+GL+ + +M +GI P E C+V LL RAGR+++A + I +M +VW+
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWR 727
Query: 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608
SLL+ C GNV++ + AAE + DP +S + +L NIYAS G W E ++ MK G
Sbjct: 728 SLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEG 787
Query: 609 VRKVPGQSWIEIQTKIH 625
V K PG+SWI I ++H
Sbjct: 788 VVKEPGRSWIGINKEVH 804
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 6.1e-90, Sum P(2) = 6.1e-90
Identities = 109/271 (40%), Positives = 172/271 (63%)
Query: 353 QH-QAGELFRLFSLMLAS--QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGL-AL 408
QH A + L S M QT+P+ T + + ACA++A+L +G Q+H Y ++ A+
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 409 DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468
+FV N L+DMY KCGS+ AR +F+ M + V+W+SL+ GY G GEEAL +F MR
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528
G + + VTL+ VL ACSH G++++G++ + M+ +G+ P E +C+VDLL RAGR+
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 529 HEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588
+ A I +M + VVW + L+ C+ HG V++G+ AAE I ++ + + LL N+Y
Sbjct: 632 NAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691
Query: 589 ASSGKWEEVARLMGSMKERGVRKVPGQSWIE 619
A++G+W++V R+ M+ +GV+K PG SW+E
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 112/277 (40%), Positives = 181/277 (65%)
Query: 351 ILQHQAGELFRLFSLMLASQT-KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD 409
+L H+ L R S + + KP+ IT ++ +CAA+++L G ++H Y +K LA D
Sbjct: 492 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 551
Query: 410 VFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRS 469
V V + L+DMY KCG L +R++F+ + +V++W+ +I+ Y G G+EA+ L R M
Sbjct: 552 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 611
Query: 470 SGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529
GV+PN VT + V ACSH G+V+EGL+++ +M+ +YG+ P+ + +CVVDLL RAGR+
Sbjct: 612 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 671
Query: 530 EAEDFINQMAFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588
EA +N M D + W SLL + + H N+++G+ AA+N+++++P ++ VLL NIY
Sbjct: 672 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 731
Query: 589 ASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
+S+G W++ + +MKE+GVRK PG SWIE ++H
Sbjct: 732 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 197/628 (31%), Positives = 335/628 (53%)
Query: 17 EYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFS------SLCKQNLYNEALVAFDFL 70
E +AF L M + + G +VD++ F + + +LFS KQ ++EA+ + +
Sbjct: 130 ELGNAF-LAMFV-RFGNLVDAWYV-FGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRM 186
Query: 71 QNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGS 130
+ T+ ++ C + L G++VH H++ + D + N ++ MY KCG
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGD 246
Query: 131 LEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRA 190
++ AR++FD MP+R+++SW AMI+G +NG + +EL+ M + PD T S+I A
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISA 306
Query: 191 CSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSW 250
C L LGR +HA+VI + + N+L MY +A +FS + RKDI SW
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSW 366
Query: 251 GSMIDGFS-------KLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGD 303
+MI G+ +D R + + P+ + +++ A+ + + + L
Sbjct: 367 TTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK 426
Query: 304 RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI-LQHQAGELFRL 362
LI + +L+ + + + + I I +K S + + L ++ E +
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-I 485
Query: 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK 422
F + +P+ IT + ACA + +L G ++H ++++TG+ LD F+ N L+DMYV+
Sbjct: 486 FLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVR 545
Query: 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGV 482
CG + +A FN + DV SW+ L+ GY++ G G ++LF RM S VRP+ +T + +
Sbjct: 546 CGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISL 604
Query: 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD 542
L CS +V +GL + M+ +YG+ P + +CVVDLL RAG + EA FI +M
Sbjct: 605 LCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTP 663
Query: 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602
D VW +LL +C+ H +D+G+ +A++I ++D + +LLCN+YA GKW EVA++
Sbjct: 664 DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRR 723
Query: 603 SMKERGVRKVPGQSWIEIQTKIHASGND 630
MKE G+ G SW+E++ K+HA +D
Sbjct: 724 MMKENGLTVDAGCSWVEVKGKVHAFLSD 751
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 189/557 (33%), Positives = 306/557 (54%)
Query: 81 STYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDE 140
+T A L+ ACS+ +L G+++H + + + +LN+Y KC +E A F E
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449
Query: 141 MPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG 200
NVV W M+ + ++ QM ++P+Q+T+ SI++ C L + LG
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509
Query: 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKL 260
Q+H+ +IK+ + + LI MY K ++ AW++ A KD+ SW +MI G+++
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569
Query: 261 DF---ARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLL 317
+F A T F +M + S + S +A+ ++ + + G + S L
Sbjct: 570 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV-SGFS--SDL 626
Query: 318 CACTSPLSLYQ--GMQIHSYIIKKGFYSNVPVC-NAILQ--HQAG---ELFRLFSLMLAS 369
+ ++LY G SY+ + + + NA++ Q+G E R+F M
Sbjct: 627 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSA 429
++ TF + A + A+++ G Q+H I KTG + V N L+ MY KCGS+ A
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 430 RELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489
+ F + + VSW+++I Y++ G G EAL F +M S VRPNHVTLVGVL+ACSH+
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806
Query: 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS 549
GLV++G+ + M +EYG+ P E CVVD+L RAG + A++FI +M D +VW++
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866
Query: 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609
LL++C H N+++G+ AA ++L+++P +SA VLL N+YA S KW+ MKE+GV
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 926
Query: 610 RKVPGQSWIEIQTKIHA 626
+K PGQSWIE++ IH+
Sbjct: 927 KKEPGQSWIEVKNSIHS 943
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 195/622 (31%), Positives = 335/622 (53%)
Query: 22 FELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPS 81
+ C ++ A +V ++ + D W+ + ++ + F ++++ + I
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNA-MIRGYAHNGESHKVMELFMDMKSS-GYNIDDF 429
Query: 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141
T+ L+S C++ L++G + H I+ K + + N +++MY KCG+LEDAR +F+ M
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Query: 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR 201
R+ V+W +I Q+ E+ A +L+ +M G++ D S ++AC+ + + G+
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549
Query: 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK-- 259
Q+H +K L + ++LI MY+K I DA VFSS+ + S ++I G+S+
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNN 609
Query: 260 LDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCA 319
L+ A +F EM + + A + + E+++L ++ ++ G +
Sbjct: 610 LEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHG-QITKRGFSSEGEYLG 668
Query: 320 CTSPLSLY---QGM-QIHSYIIKKGFYSNVPVCNAILQ-H-QAG---ELFRLFSLMLASQ 370
S L +Y +GM + + + ++ + ++ H Q G E + + M
Sbjct: 669 I-SLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG 727
Query: 371 TKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR 430
PD TF V+ C+ ++SL G +H I LD N L+DMY KCG + +
Sbjct: 728 VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSS 787
Query: 431 ELFNFMED-PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489
++F+ M +VVSW+SLI GYA+ G E+ALK+F MR S + P+ +T +GVLTACSH
Sbjct: 788 QVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHA 847
Query: 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS 549
G V +G +++ +M +YGI + +C+VDLL R G + EA+DFI D +W S
Sbjct: 848 GKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSS 907
Query: 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609
LL +C+ HG+ G+ +AE +++++P NS+A VLL NIYAS G WE+ L M++RGV
Sbjct: 908 LLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGV 967
Query: 610 RKVPGQSWIEIQTKIH--ASGN 629
+KVPG SWI+++ + H A+G+
Sbjct: 968 KKVPGYSWIDVEQRTHIFAAGD 989
|
|
| TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 193/582 (33%), Positives = 305/582 (52%)
Query: 56 KQNLYNEALVAFDFLQNNTNFRIRPS--TYADLISACSSLRSLQLGRKVHDHILSSKCQP 113
++ LY++A+ F + + + P TY + A L+S++LG VH IL S
Sbjct: 92 REGLYHDAISVFIRMVSE-GVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGR 150
Query: 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173
D + N +L MY G +E AR VFD M R+V+SW MI+G +NG N A+ ++ M+
Sbjct: 151 DKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMV 210
Query: 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233
+ D T S++ C L + +GR +H V + G + +NAL+ MY K R+
Sbjct: 211 NESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMD 270
Query: 234 DAWNVFSSIARKDITSWGSMIDGFSK-------LDFARTVFNEMESPNLASWNTIIAGVA 286
+A VF + R+D+ +W MI+G+++ L+ R + E PN + ++++
Sbjct: 271 EARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG 330
Query: 287 SCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIK--KGFYSN 344
N+ L +++ D + SL+ + ++ S K G +S
Sbjct: 331 DALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSA 390
Query: 345 VPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT 404
+ + + + LF M +P+ T N ++ A AA+A L +HCY+ KT
Sbjct: 391 I-IAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKT 449
Query: 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP----DVVSWSSLIVGYAQFGCGEEA 460
G + GL+ +Y KCG+L SA ++FN +++ DVV W +LI GY G G A
Sbjct: 450 GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNA 509
Query: 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520
L++F M SGV PN +T L ACSH GLVEEGL L+R M Y + +C+VD
Sbjct: 510 LQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVD 569
Query: 521 LLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA 580
LL RAGR+ EA + I + F+ VW +LLA+C TH NV +G+ AA + +++P N+
Sbjct: 570 LLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGN 629
Query: 581 LVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQT 622
VLL NIYA+ G+W+++ ++ M+ G+RK PG S IEI++
Sbjct: 630 YVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIRS 671
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 198/596 (33%), Positives = 318/596 (53%)
Query: 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACS--SLRS---LQLGRKVHD 104
L L +Q EA F + N+ + P +Y L+S+ SL L+ GR+VH
Sbjct: 280 LMVGLVRQKWGEEATKLF--MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHG 337
Query: 105 HILSSKCQPDAV-LHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQEN 163
H++++ V + N ++NMY KCGS+ DAR VF M ++ VSW +MI G QNG
Sbjct: 338 HVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFI 397
Query: 164 AAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALI 223
A+E Y M + ++P FT S + +C+ L LG+Q+H +K ++ NAL+
Sbjct: 398 EAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALM 457
Query: 224 AMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK----LDFARTVF-NEMESP---NL 275
+Y + + + +FSS+ D SW S+I ++ L A F N + N
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNR 517
Query: 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQ-IHS 334
+++++++ V+S S + + + I D T + L AC G + I S
Sbjct: 518 ITFSSVLSAVSSLSFGELGKQIHG-LALKNNIADEATTENALIACYGKCGEMDGCEKIFS 576
Query: 335 YIIKK--GFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLE 392
+ ++ N + I + L ML + + D + V+ A A++A+LE
Sbjct: 577 RMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLE 636
Query: 393 MGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYA 452
G ++H ++ L DV V + L+DMY KCG L A FN M + SW+S+I GYA
Sbjct: 637 RGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYA 696
Query: 453 QFGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511
+ G GEEALKLF M+ G P+HVT VGVL+ACSH GL+EEG + + M + YG+ P
Sbjct: 697 RHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPR 756
Query: 512 RERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLL-ASCKTHGN-VDVGKRAAEN 569
E SC+ D+L RAG + + EDFI +M ++++W+++L A C+ +G ++GK+AAE
Sbjct: 757 IEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEM 816
Query: 570 ILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
+ +++P N+ VLL N+YA+ G+WE++ + MK+ V+K G SW+ ++ +H
Sbjct: 817 LFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVH 872
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 196/610 (32%), Positives = 324/610 (53%)
Query: 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYA 84
C L +A V D W+ L + L K ++ ++ F + ++ + T++
Sbjct: 142 CGDLKEASRVFDEVKIEKALFWNI-LMNELAKSGDFSGSIGLFKKMMSS-GVEMDSYTFS 199
Query: 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR 144
+ + SSLRS+ G ++H IL S + N ++ Y K ++ AR VFDEM +R
Sbjct: 200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLH 204
+V+SW ++I G NG + ++VQML SG+ D T S+ C+ + LGR +H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 205 AHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFAR 264
+ +K+ N L+ MY+K + A VF ++ + + S+ SMI G+++ A
Sbjct: 320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAG 379
Query: 265 T---VFNEMESPNLA-SWNTIIAGVASCSN---ANEAMSLFSEMGDRELIPDGLTVRSLL 317
+F EME ++ T+ A + C+ +E + + + +L D +L+
Sbjct: 380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALM 439
Query: 318 CACTSPLSLYQGMQIHSYIIKKGFYS-NVPVCNAILQHQAGELFRLFSLMLASQT-KPDH 375
S+ + + S + K S N + A E LF+L+L + PD
Sbjct: 440 DMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 499
Query: 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF 435
T V+ ACA++++ + G ++H YIM+ G D V N L+DMY KCG+L A LF+
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 559
Query: 436 MEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEG 495
+ D+VSW+ +I GY G G+EA+ LF +MR +G+ + ++ V +L ACSH GLV+EG
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
Query: 496 LQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCK 555
+ + IM++E I PT E +C+VD+LAR G + +A FI M D +W +LL C+
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCR 679
Query: 556 THGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQ 615
H +V + ++ AE + +++P N+ VL+ NIYA + KWE+V RL + +RG+RK PG
Sbjct: 680 IHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGC 739
Query: 616 SWIEIQTKIH 625
SWIEI+ +++
Sbjct: 740 SWIEIKGRVN 749
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFI1 | PP280_ARATH | No assigned EC number | 0.5087 | 0.9100 | 0.7513 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 634 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-135 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-74 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-71 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-47 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-27 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-135
Identities = 212/649 (32%), Positives = 332/649 (51%), Gaps = 87/649 (13%)
Query: 32 GEVVDSFLRRFDDIWDF----------DLFS------SLCKQNLYNEALVAFDFLQNNTN 75
G + S RF ++ DLFS K ++EAL
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL---CLYHRMLW 180
Query: 76 FRIRPS--TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLED 133
+RP T+ ++ C + L GR+VH H++ + D + N ++ MY KCG +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 134 ARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSG 193
AR+VFD MP+R+ +SW AMI+G +NG+ +EL+ M + + PD T S+I AC
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 194 LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSM 253
L LGR++H +V+K+ + N+LI MY +A VFS + KD SW +M
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 254 IDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTV 313
I G+ K ++A+ ++ M + PD +T+
Sbjct: 361 ISGYEKNGLP----------------------------DKALETYALMEQDNVSPDEITI 392
Query: 314 RSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ-------------------- 353
S+L AC L G+++H +KG S V V NA+++
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 354 ----------------HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQL 397
++ E F ML + KP+ +T + ACA + +L G ++
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI 511
Query: 398 HCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG 457
H ++++TG+ D F+ N L+D+YV+CG + A FN E DVVSW+ L+ GY G G
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKG 570
Query: 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517
A++LF RM SGV P+ VT + +L ACS G+V +GL+ + M+ +Y I P + +C
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630
Query: 518 VVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577
VVDLL RAG++ EA +FIN+M D VW +LL +C+ H +V++G+ AA++I ++DP +
Sbjct: 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690
Query: 578 SAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIHA 626
+LLCN+YA +GKW+EVAR+ +M+E G+ PG SW+E++ K+HA
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 1e-74
Identities = 156/546 (28%), Positives = 257/546 (47%), Gaps = 78/546 (14%)
Query: 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141
Y L C R+++ G +V LSS L N +L+M+ + G L A VF +M
Sbjct: 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM 147
Query: 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR 201
P+R++ SW ++ G ++ G + A+ LY +ML +G+ PD +TF ++R C G+ + GR
Sbjct: 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207
Query: 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLD 261
++HAHV++ + NALI MY K ++ A VF + R+D SW +MI G+ +
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-- 265
Query: 262 FARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321
N E + LF M + + PD +T+ S++ AC
Sbjct: 266 ------NGE--------------------CLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ--------HQAGELF------------- 360
G ++H Y++K GF +V VCN+++Q +A ++F
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 361 ---------------RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTG 405
++LM PD IT V+ ACA + L++G +LH + G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 406 LALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFR 465
L V V N L++MY KC + A E+F+ + + DV+SW+S+I G EAL FR
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 466 RMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY----RIMQNEYGIIPTRERRSCVVDL 521
+M + ++PN VTL+ L+AC+ +G + G +++ R G +P + ++DL
Sbjct: 480 QMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDL 533
Query: 522 LARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID--PTNSA 579
R GR++ A + N + + D+V W LL HG + +++ P
Sbjct: 534 YVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 580 ALVLLC 585
+ LLC
Sbjct: 592 FISLLC 597
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 3e-71
Identities = 138/479 (28%), Positives = 227/479 (47%), Gaps = 64/479 (13%)
Query: 183 TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242
T+ +++ AC L + + ++ HV S N ++ M+ K
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK-------------- 170
Query: 243 ARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMG 302
G +ID AR +F+EM NLASW TII G+ N EA +LF EM
Sbjct: 171 -------CGMLID-------ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 303 DRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPV----------CNAI- 351
+ + T +L A S G Q+H ++K G + V C I
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 352 -------------------------LQHQAGELFRLFSLMLASQTKPDHITFNDVMGACA 386
L + E L+ M S D TF+ ++ +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS 446
+A LE Q H +++TG LD+ L+D+Y K G + AR +F+ M +++SW++
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396
Query: 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY 506
LI GY G G +A+++F RM + GV PNHVT + VL+AC + GL E+G ++++ M +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRA 566
I P +C+++LL R G + EA I + F + +W +LL +C+ H N+++G+ A
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516
Query: 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625
AE + + P V+L N+Y SSG+ E A+++ ++K +G+ P +WIE++ + H
Sbjct: 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 5e-48
Identities = 104/439 (23%), Positives = 206/439 (46%), Gaps = 67/439 (15%)
Query: 150 TAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK 209
+ + A CS +GQ A++L M + + D+ + ++ R C V G ++ + +
Sbjct: 56 SQLRALCS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 210 SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNE 269
S + NA+++M+ +F ++ AW VF + +D+ SW ++ G++K +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY------- 167
Query: 270 MESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQG 329
+EA+ L+ M + PD T +L C L +G
Sbjct: 168 ---------------------FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206
Query: 330 MQIHSYIIKKGFYSNVPVCNAIL------------------------------------Q 353
++H+++++ GF +V V NA++
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVM 413
+ E LF M PD +T V+ AC + +G ++H Y++KTG A+DV V
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 414 NGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR 473
N L+ MY+ GS G A ++F+ ME D VSW+++I GY + G ++AL+ + M V
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533
P+ +T+ VL+AC+ +G ++ G++L+ + + + G+I + ++++ ++ + +A +
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALE 445
Query: 534 FINQMAFDDDIVVWKSLLA 552
+ + + D++ W S++A
Sbjct: 446 VFHNIP-EKDVISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-47
Identities = 112/389 (28%), Positives = 169/389 (43%), Gaps = 71/389 (18%)
Query: 41 RFDDIWDFDLFSSLCKQ-------NLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93
R DD SLC Q + EAL F+ L+ F + STY L+ AC +L
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMI 153
+S++ + V+ H+ SS +PD + N +L M+ KCG L DAR +FDEMP+RN+ SW +I
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196
Query: 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHG 213
G G A L+ +M + G + TF ++RA +GL G+QLH V+K+
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 214 SHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESP 273
ALI MY+K ++ AR VF+ M
Sbjct: 257 GDTFVSCALIDMYSK----------------------------CGDIEDARCVFDGMPEK 288
Query: 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIH 333
+WN+++AG A + EA+ L+ EM D + D T ++ + L Q H
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 334 SYIIKKGF-------------YS------------------NVPVCNAIL----QHQAG- 357
+ +I+ GF YS N+ NA++ H G
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 358 ELFRLFSLMLASQTKPDHITFNDVMGACA 386
+ +F M+A P+H+TF V+ AC
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 40/309 (12%)
Query: 288 CSNAN--EAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNV 345
CS+ +A+ L M + + D +L C ++ +G ++ S + V
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121
Query: 346 PVCNAILQH---------------------------------QAG---ELFRLFSLMLAS 369
+ NA+L +AG E L+ ML +
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181
Query: 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSA 429
+PD TF V+ C + L G ++H ++++ G LDV V+N L+ MYVKCG + SA
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 430 RELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489
R +F+ M D +SW+++I GY + G E L+LF MR V P+ +T+ V++AC +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS 549
G G +++ + G + ++ + G EAE ++M D V W +
Sbjct: 302 GDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTA 359
Query: 550 LLASCKTHG 558
+++ + +G
Sbjct: 360 MISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-20
Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 4/205 (1%)
Query: 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVM 413
+A ELF + L T++ ++ AC A+ S+ ++ ++ +G D ++M
Sbjct: 104 REALELFEI--LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 414 NGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR 473
N ++ M+VKCG L AR LF+ M + ++ SW ++I G G EA LFR M G
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533
T V +L A + +G G QL+ + G++ ++D+ ++ G + +A
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLH-CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 534 FINQMAFDDDIVVWKSLLASCKTHG 558
+ M + V W S+LA HG
Sbjct: 281 VFDGMP-EKTTVAWNSMLAGYALHG 304
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 91/452 (20%), Positives = 170/452 (37%), Gaps = 85/452 (18%)
Query: 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSK 110
F CK+ + F L N ST+ L+S C+S + + +V + +
Sbjct: 412 FFKACKKQRAVKEAFRFAKLIRNPTL----STFNMLMSVCASSQDIDGALRVLRLVQEAG 467
Query: 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMP----QRNVVSWTAMIAGCSQNGQENAAI 166
+ D L+ +++ K G ++ VF EM + NV ++ A+I GC++ GQ A
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 167 ELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG------RQLHAHVIKSEHGSHLISQN 220
Y M + PD+ F ++I AC V + H I +H I+
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH----ITVG 583
Query: 221 ALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNL-ASWN 279
AL+ ++ D A+ V+ + N+ +
Sbjct: 584 ALMKACANAGQV----------------------------DRAKEVYQMIHEYNIKGTPE 615
Query: 280 TIIAGVASCSNANE---AMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYI 336
V SCS + A+S++ +M + + PD + +L+ H+
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG-----------HAGD 664
Query: 337 IKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQ 396
+ K F ILQ K ++++ +MGAC+ + + +
Sbjct: 665 LDKAF--------EILQD-----------ARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED----PDVVSWSSLIVGYA 452
L+ I L V MN L+ + L A E+ + M+ P+ +++S L+V
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 453 QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT 484
+ + L L + + G++PN + + +T
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKPN-LVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 40/292 (13%)
Query: 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMN 414
Q + +L M + D + + C ++E G+++ + + +L V + N
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 415 GLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474
++ M+V+ G L A +F M + D+ SW+ L+ GYA+ G +EAL L+ RM +GVRP
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 475 NHVTLVGVLTACS-----------HVGLVEEGLQLYRIMQNE-----------------Y 506
+ T VL C H +V G +L + N +
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 507 GIIPTRERRS--CVVDLLARAGRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVD 561
+P R+ S ++ G E + M + D D++ S++++C+ G+
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 562 VGKRAAENILKIDPTNSAALVLLCN----IYASSGKWEEVARLMGSMKERGV 609
+G+ ++K T A V +CN +Y S G W E ++ M+ +
Sbjct: 306 LGREMHGYVVK---TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRAC 191
+VV++ +I G + G+ A++L+ +M + G+ P+ +T+ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 9e-10
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT 478
PDVV++++LI GY + G EEALKLF M+ G++PN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 66/325 (20%), Positives = 132/325 (40%), Gaps = 58/325 (17%)
Query: 259 KLDFARTVFNEMES----PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR 314
K+D VF+EM + N+ ++ +I G A +A + M + + PD +
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 315 SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSL---MLASQT 371
+L+ AC Q+G + R F + M A
Sbjct: 547 ALISACG---------------------------------QSGAVDRAFDVLAEMKAETH 573
Query: 372 --KPDHITFNDVMGACA----AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS 425
PDHIT +M ACA + E+ +H Y +K + +N + G
Sbjct: 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS----QKGD 629
Query: 426 LGSARELFNFMED----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVG 481
A +++ M+ PD V +S+L+ G ++A ++ + R G++ V+
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--- 538
++ ACS+ ++ L+LY +++ + PT + ++ L ++ +A + +++M
Sbjct: 690 LMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 539 AFDDDIVVWKSLLASCKTHGNVDVG 563
+ + + LL + + + DVG
Sbjct: 749 GLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 113 PDAVLHNHILNMYGKCGSLEDARMVFDEMPQR----NVVSWTAMIAGCSQ 158
PD V +N +++ Y K G +E+A +F+EM +R NV +++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC 320
P++ ++NT+I G EA+ LF+EM R + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGV 472
V+++SLI GY + G EEAL+LF+ M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED----PDVVSWSSLIVGYAQ 453
DV N L+D Y K G + A +LFN M+ P+V ++S LI G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475
V++++LI G + G EEAL+LF+ M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQL 498
D +++LI A+ G + ++F M ++GV N T ++ C+ G V +
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA-----FDDDIVVWKSLLAS 553
Y IM+++ + P R + ++ ++G V A D + +M D D + +L+ +
Sbjct: 530 YGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 554 CKTHGNVDVGKRAAENILKID----PTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609
C G VD K + I + + P V C + G W+ + MK++GV
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC---SQKGDWDFALSIYDDMKKKGV 645
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGL 177
V++ ++I+G + G+ A+EL+ +M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPD 180
V++ +I G + G+ A+EL+ +M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMP 142
+PD V +N +++ + G +++A + DEM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468
PDVV++++LI G + G +EA++L M
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.69 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.6 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.44 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.4 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.32 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.84 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.75 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.55 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.46 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.0 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.98 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.48 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.48 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.44 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.38 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.23 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.21 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.06 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.03 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.98 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.5 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.36 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.88 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.15 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.08 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.08 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.52 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.26 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.67 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.19 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.92 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.86 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.86 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.75 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.12 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.7 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.12 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.11 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.04 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.0 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.61 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.29 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.97 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.44 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.42 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.27 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.54 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.63 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.88 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.98 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.56 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.36 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.36 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-85 Score=714.18 Aligned_cols=612 Identities=34% Similarity=0.593 Sum_probs=592.4
Q ss_pred ccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhc
Q 036704 13 RWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSS 92 (634)
Q Consensus 13 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (634)
..+..++.+|.+.|+++.|+++|+++++++..+|+ .++.+|++.|++++|+++|+.|... |+.||..||+.++++|+.
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCC
Confidence 45678899999999999999999999999999999 8999999999999999999999988 999999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 93 LRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
.+++..+.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHH
Q 036704 173 LQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGS 252 (634)
Q Consensus 173 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 252 (634)
.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|.++||.
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc---chHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 253 MIDGFSKL---DFARTVFNEME----SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 253 ll~~~~~~---~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
++.+|.+. ++|.++|++|. .||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999775 46999999885 499999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
+++|.++|+.|.+ ++..+|+.++. ++.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999864 56778888883 389999999999986 5999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 036704 401 IMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV 480 (634)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 480 (634)
+.+.|+.++..++++++.+|+++|++++|.++|+.+ .+|..+|++|+.+|+++|+.++|.++|++|.+.|+.||..||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeCCeEeeeccCCC
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIHASGNDIS 632 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 632 (634)
+.++.+.++++++.|+++..|..++++|.+.|+|++|.++.+.|++.|++++||+||+++.+++|.|.-++.
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999976653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=599.45 Aligned_cols=496 Identities=34% Similarity=0.589 Sum_probs=470.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHH
Q 036704 42 FDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHI 121 (634)
Q Consensus 42 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (634)
+...|+ .++.++.+.|++++|+++|++|....++.|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~-~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLC-SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHH-HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345787 8999999999999999999999987567899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHh
Q 036704 122 LNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR 201 (634)
Q Consensus 122 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (634)
+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHH
Q 036704 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTI 281 (634)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~l 281 (634)
+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.+ +|+.+||+|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------~~~vt~n~l 296 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----------------------------KTTVAWNSM 296 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------CChhHHHHH
Confidence 9999999999999999999999999999999999999988765 577889999
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
|.+|++.|++++|+++|++|.+.|+.||
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd---------------------------------------------------- 324 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSID---------------------------------------------------- 324 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC----------------------------------------------------
Confidence 9999999999999999999988776554
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCCh
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDV 441 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 441 (634)
..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++++.+|+++|++++|.++|+.|.+||.
T Consensus 325 -------------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 325 -------------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred -------------HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 4555556666667777777788888888888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
.+|++||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+.+|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999878999999999999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 522 LARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
|++.|++++|.+++++++..|+..+|+.++.+|..+|+++.|..+++++.+..|++...|..++.+|++.|++++|.+++
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcCCCCccEEEeCCeEeeeccCC
Q 036704 602 GSMKERGVRKVPGQSWIEIQTKIHASGNDI 631 (634)
Q Consensus 602 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 631 (634)
++|++.|+.+.||++|+++.+.+|.+..++
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999999999999987654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=611.43 Aligned_cols=563 Identities=26% Similarity=0.436 Sum_probs=513.6
Q ss_pred CCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhh
Q 036704 40 RRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHN 119 (634)
Q Consensus 40 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (634)
.+.+..++ .++.++++.|++++|+.+|+.|.+. +++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...++
T Consensus 48 ~~~~~~~n-~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSN-SQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHH-HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34455677 8999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchh
Q 036704 120 HILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGL 199 (634)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 199 (634)
.++.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhc---cchHHHHHhcCC----C
Q 036704 200 GRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK---LDFARTVFNEME----S 272 (634)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~---~~~a~~~~~~~~----~ 272 (634)
+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|.++||++|.+|.+ .++|..+|++|. .
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999976 456899999986 4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|+.|. .|+..+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 46788899888
Q ss_pred h-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChH
Q 036704 353 Q-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 353 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (634)
. +++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++++.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 4 38999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC
Q 036704 428 SARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG 507 (634)
Q Consensus 428 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 507 (634)
+|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+. |
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g 519 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-G 519 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999986 58999999999999999999999999999999876 8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhHHHHHH
Q 036704 508 IIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID-PTNSAALVLLCN 586 (634)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 586 (634)
+.++..++++|+++|+++|++++|.++|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.. .+|..+|..++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 8887777777777777777777777777776 5677777777777777777777777777776532 225556666667
Q ss_pred HHHhcCChHHHHHHHHHHH-hCCCcCC
Q 036704 587 IYASSGKWEEVARLMGSMK-ERGVRKV 612 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~-~~g~~~~ 612 (634)
+|++.|++++|.++|+.|. +.|+.|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 7777777777777777776 4566554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-66 Score=548.75 Aligned_cols=513 Identities=16% Similarity=0.233 Sum_probs=478.3
Q ss_pred CCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCC-CCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHH
Q 036704 75 NFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKC-QPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMI 153 (634)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 153 (634)
...++...|..++..+++.|+++.|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777899999999999999999999999999985 577888889999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--CCCCCCHh
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGD--RELIPDGL 311 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~ 311 (634)
+|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|.+|.. .|+.||..
T Consensus 525 eAl~lf~~M~~~Gv------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 525 KAFGAYGIMRSKNV------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 99999999987765 38999999999999999999999999999976 68999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
+|+.+|.+|++.|++++|.++|+.|.+.++.|+..+|+.++. +++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999993 389999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHH
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME----DPDVVSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 462 (634)
+.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 5999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----c-------------
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----A------------- 525 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------- 525 (634)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..+.+ +
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999987 999999999999876432 1
Q ss_pred ------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHhcCChH
Q 036704 526 ------GRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK-IDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 526 ------g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
+..++|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. ..+.+..+|+.++..+.+. .+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hH
Confidence 2346799999999 8999999999999888888899999998887654 4566888999999987432 36
Q ss_pred HHHHHHHHHHhCCCcCCCC
Q 036704 596 EVARLMGSMKERGVRKVPG 614 (634)
Q Consensus 596 ~A~~~~~~~~~~g~~~~~~ 614 (634)
+|..++++|.+.|+.|+..
T Consensus 898 ~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 8999999999999987763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-65 Score=541.36 Aligned_cols=490 Identities=20% Similarity=0.260 Sum_probs=364.4
Q ss_pred HHhhcCChHHHHHHhhcccCCCCccchH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCCh
Q 036704 21 AFELCMLLDQAGEVVDSFLRRFDDIWDF----DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSL 96 (634)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (634)
.+.+.|++++|.++|++|++++...|+. .++..|.+.|..++|+.+|+.|.. |+..+|+.++.+|++.|++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCH
Confidence 3444577777777777776665444431 234456666777777777666642 6666777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC----CCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 97 QLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP----QRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
+.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777765 366677777777777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHH--hcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchH
Q 036704 173 LQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK--SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSW 250 (634)
Q Consensus 173 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 250 (634)
.+.|+.||..||+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.+..
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-- 611 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-- 611 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--
Confidence 7777777777777777777777777777777777765 456677777777777777777777777777776665542
Q ss_pred HHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH
Q 036704 251 GSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM 330 (634)
Q Consensus 251 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 330 (634)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 612 ----------------------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee-- 667 (1060)
T PLN03218 612 ----------------------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK-- 667 (1060)
T ss_pred ----------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH--
Confidence 66677777777777777777777777777777777777777777777777665555
Q ss_pred HHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCch
Q 036704 331 QIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDV 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (634)
|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 668 ----------------------------A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 668 ----------------------------AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred ----------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 4555555566667888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFME----DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
.+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.+.|.+++++|.+.|+.||..+|+.++..|
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888886 3888888888888888888888888888888888888888888887654
Q ss_pred cc----c-------------------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 036704 487 SH----V-------------------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AF 540 (634)
Q Consensus 487 ~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 540 (634)
.+ . +..+.|..+|++|.+. |+.||..+|+.++.++.+.+..+.+..+++.| +.
T Consensus 800 ~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 800 LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 32 1 1246789999999987 99999999999998888889999999999888 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 541 DDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.|+..+|+.++.++.+. .++|..++++|.+
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 56788999999987432 3689999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=468.02 Aligned_cols=456 Identities=14% Similarity=0.170 Sum_probs=393.4
Q ss_pred cccchhhHHhhcCChHHHHHHhhcccC-----CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 14 WCCEYWDAFELCMLLDQAGEVVDSFLR-----RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 14 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
.++..+..|.+.|++++|.++|+.+.. ++...|+ .++.++.+.++.+.|.+++..|.+. |+.||..+|+.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~-~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYD-ALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHH
Confidence 345668889999999999999998863 3445677 8899999999999999999999998 99999999999999
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC----CCCccchHHHHHHHHhCCChhH
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP----QRNVVSWTAMIAGCSQNGQENA 164 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 164 (634)
.|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.++++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999995 5899999999999999999999999999996 4889999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCC
Q 036704 165 AIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIAR 244 (634)
Q Consensus 165 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 244 (634)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999885 57899999999999999999999999999987
Q ss_pred CCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCC
Q 036704 245 KDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPL 324 (634)
Q Consensus 245 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 324 (634)
.+. .||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 319 ~g~------------------------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 319 SGV------------------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred cCC------------------------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 765 38999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHH
Q 036704 325 SLYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHC 399 (634)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 399 (634)
++++|.++|+.|. .++..+|+.++. ++.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 375 ~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 375 RMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999998875 356667777773 2777777777777777777777777777777777777777777777
Q ss_pred HHHH-hCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 036704 400 YIMK-TGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NH 476 (634)
Q Consensus 400 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 476 (634)
.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++|+.+|..+|+++.|..+++++.+. .| +.
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~ 528 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKL 528 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCC
Confidence 7764 5777777777777777777777777777777775 577777777777777777777777777777644 34 35
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
.+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 67777777777777777777777777766 6543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=313.80 Aligned_cols=578 Identities=11% Similarity=0.003 Sum_probs=483.0
Q ss_pred cchhhHHhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 16 CEYWDAFELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
..++..+...|++++|.+.|++..+.+|.... ..+...+.+.|++++|+..++.+... .+.+...+..+...+.+.
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHC
Confidence 45678899999999999999988765444322 14566688999999999999999874 455677889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYV 170 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 170 (634)
|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+ .+...+..++..+.+.|++++|..+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998875 55677888888999999999999999988764 233466678889999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc---
Q 036704 171 QMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDI--- 247 (634)
Q Consensus 171 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 247 (634)
.+... .+++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.++
T Consensus 456 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 456 KLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 99875 35677889999999999999999999999998764 33456778899999999999999999998875433
Q ss_pred chHHHHHHHh---hccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhc
Q 036704 248 TSWGSMIDGF---SKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321 (634)
Q Consensus 248 ~~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 321 (634)
.++..+...+ ++.+.|...++++.. .+...+..++..+...|++++|..+++.+... .+.+..++..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 4455555544 445668888877643 45677888999999999999999999999765 3556788999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCChhHHhHHH-----hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHH
Q 036704 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-----QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQ 396 (634)
Q Consensus 322 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 396 (634)
..|++++|...++.+.+.... +...+..+. .+++++|...++++.+.. +.+..++..+...+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876432 222222211 349999999999998754 4557789999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 474 (634)
+++.+.+.+.. +...+..+...+.+.|++++|.+.|+.+. .|+..++..+...+...|++++|.+.++++.+.. +.
T Consensus 691 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 691 IAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 99999887643 77788888999999999999999999876 3666788889999999999999999999999874 44
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...|...|++++|.+.|+++.+. .+++...++.+...+...|+ .+|++.++++ ...| ++.++..++.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 6888889999999999999999999999864 35577888999999999999 8899999988 4444 5677888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+...|++++|.+.++++++..|.++.++..++.++.+.|++++|.+++++|++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=310.14 Aligned_cols=581 Identities=13% Similarity=0.019 Sum_probs=485.3
Q ss_pred cchhhHHhhcCChHHHHHHhhcccCCCCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 16 CEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDF--DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
...+..+...|++++|.+.|++..+.++..... .+...+...|++++|...|+.+.+. .+.+...+..+...+...
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHC
Confidence 345667788999999999999887666554331 2344578899999999999999875 455667788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYV 170 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 170 (634)
|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+ .+...+..+...+...|++++|.+.++
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999999998775 56778899999999999999999999998764 345577788888999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc--
Q 036704 171 QMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT-- 248 (634)
Q Consensus 171 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 248 (634)
.+.+... ........++..+.+.|++++|..+++.+... .+.+..++..+..++...|++++|...|+++.+.++.
T Consensus 422 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 499 (899)
T TIGR02917 422 TAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499 (899)
T ss_pred HHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Confidence 9987642 23345566778889999999999999998875 3456788999999999999999999999987654433
Q ss_pred -hHHHHHHHh---hccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhc
Q 036704 249 -SWGSMIDGF---SKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321 (634)
Q Consensus 249 -~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 321 (634)
.+..+...+ ++.+.|...++++.. .+..++..+...+.+.|+.++|..++.++...+ +.+...+..+...+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 333343333 456668888887753 467789999999999999999999999987653 345667788889999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCChhHHhHHH-----hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHH
Q 036704 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-----QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQ 396 (634)
Q Consensus 322 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 396 (634)
..|+++.|..+++.+.+... .+...+..+. .+++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999987543 2333333332 349999999999998764 4466788889999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR 473 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 473 (634)
+++++.+.... +...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...++++... .
T Consensus 657 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 657 SLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 99999987643 678889999999999999999999999874 45667888899999999999999999999987 4
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 036704 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLL 551 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~ 551 (634)
|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..++++.++..++
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56578888999999999999999999999864 4557888899999999999999999999998 3345788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
..+...|+ ++|+..++++++..|+++..+..++.++.+.|++++|.++++++.+.+..
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999 88999999999999999999999999999999999999999999987643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-25 Score=245.94 Aligned_cols=406 Identities=11% Similarity=0.029 Sum_probs=305.7
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc-----hHHHHHH-------
Q 036704 188 IRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT-----SWGSMID------- 255 (634)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~------- 255 (634)
...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|++..+.++. .|..++.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345668899999999999998864 336778888999999999999999999887754432 1222221
Q ss_pred --------HhhccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCC
Q 036704 256 --------GFSKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSP 323 (634)
Q Consensus 256 --------~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 323 (634)
..++.++|...|++... .+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-h
Confidence 11345567888776654 45667888899999999999999999998865 343 445555555553 4
Q ss_pred CChHHHHHHHHHHHHhCCC----------CCh--hHHhHHH-hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc
Q 036704 324 LSLYQGMQIHSYIIKKGFY----------SNV--PVCNAIL-QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS 390 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~----------~~~--~~~~~ll-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 390 (634)
++.++|...++.+...... .+. .....+. .+++++|.+.+++..+.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5778888877654332110 000 0111122 349999999999998864 3345677788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC----Ch---------hhHHHHHHHHHhcCCh
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP----DV---------VSWSSLIVGYAQFGCG 457 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 457 (634)
+++|...++++.+.... +...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999876543 4555555556677889999999999988632 11 1123456678899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
++|..+++. .+++...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 2445667788889999999999999999999964 233577888999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 538 M-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 538 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
. ...| +...+..+..++...|++++|.+++++++...|+++ .++..++.++...|++++|+..+++.+.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8 4444 566778888899999999999999999998776544 3666778999999999999999998863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-24 Score=239.87 Aligned_cols=580 Identities=12% Similarity=0.051 Sum_probs=405.8
Q ss_pred chhhHHhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccH-----------
Q 036704 17 EYWDAFELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTY----------- 83 (634)
Q Consensus 17 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 83 (634)
.-+..+...++.+.|.+.++++...+|+.-. ..++..+.+.|+.++|...++++.+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcC
Confidence 3477788899999999999998755544332 25566788999999999999999975 3333322
Q ss_pred ------HHHHHHhhccCChhHHHHHHHHHHHcCCCCCcch-hhHHHHHHHccCChHHHHHHhccCCC--C-CccchHHHH
Q 036704 84 ------ADLISACSSLRSLQLGRKVHDHILSSKCQPDAVL-HNHILNMYGKCGSLEDARMVFDEMPQ--R-NVVSWTAMI 153 (634)
Q Consensus 84 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 153 (634)
..+.+.+.+.|++++|.+.|+.+.+.+ +|+... ...........|+.++|.+.++++.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 333456788999999999999998765 444321 11112222346999999999999875 3 445777888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC----------------Chh---hHHHHHHHhhcCCCchhHhHHHHHHHHhcCCC
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMP----------------DQF---TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGS 214 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 214 (634)
..+...|+.++|+..++++....... +.. .+...+..+-.....+.+...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 89999999999999999987642100 000 11111111222222334444554443333333
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHh---hccchHHHHHhcCCC--CCh---hhHH----
Q 036704 215 HLISQNALIAMYTKFDRILDAWNVFSSIARKDI---TSWGSMIDGF---SKLDFARTVFNEMES--PNL---ASWN---- 279 (634)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~---~~~~~a~~~~~~~~~--~~~---~~~~---- 279 (634)
+.. .......+...|++++|+..|++..+.++ ..+..+-..+ ++.++|...|++..+ |+. ..|.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345677889999999999998876544 3444444444 445567777776553 322 1121
Q ss_pred --------HHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhH---H
Q 036704 280 --------TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPV---C 348 (634)
Q Consensus 280 --------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~ 348 (634)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+......... .
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22346678899999999999887752 23455666777888889999999999998887643322111 1
Q ss_pred hHHHhcCHhHHHHHHHHHHHCCCC--------CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036704 349 NAILQHQAGELFRLFSLMLASQTK--------PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMY 420 (634)
Q Consensus 349 ~~ll~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (634)
......+.++|...++.+...... .....+..+...+...|++++|...++++.+..+. +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 112233677888777664332100 01123455667788899999999999999987655 667778888999
Q ss_pred hhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHhcc
Q 036704 421 VKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV---------TLVGVLTACSH 488 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~ 488 (634)
.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++.. .+......+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998753 3 34445555556677899999999988865443222221 22345667888
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
.|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998771 2345566778999999999999999999998 4455 678999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
++++.+..|+++.++..++.++.+.|++++|.++++++.....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999987543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-23 Score=218.20 Aligned_cols=558 Identities=9% Similarity=-0.034 Sum_probs=364.1
Q ss_pred HhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLG 99 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (634)
+...|++++|...|+...+.+|.... +.+...|.+.|+.++|...+++..+. .|+...|..++..+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhH
Confidence 44459999999999998876665422 35677799999999999999999974 45555555544333 899999
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHH--------HHccCChHHHHHHhccCCCCC--ccchHHH-HHHHHhCCChhHHHHH
Q 036704 100 RKVHDHILSSKCQPDAVLHNHILNM--------YGKCGSLEDARMVFDEMPQRN--VVSWTAM-IAGCSQNGQENAAIEL 168 (634)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~~ 168 (634)
..+++++.+.. |-+..++..+... |.+.+...++++ .....|+ ....... ...|.+.|++++|+++
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999986 5566777777766 777766666666 3333343 4434444 8899999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhc-CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC--
Q 036704 169 YVQMLQSGLMPDQFTFGSIIRACSG-LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK-- 245 (634)
Q Consensus 169 ~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 245 (634)
++++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..+......+...|.+.|+.++|.+.++++...
T Consensus 205 L~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 999999863 344445556666666 366 667666442 34467889999999999999999999999988643
Q ss_pred ---CcchHHHHHHHhhcc------------------------------c---hHHHHHhcCCCCChhhHHHHHHHH--Hc
Q 036704 246 ---DITSWGSMIDGFSKL------------------------------D---FARTVFNEMESPNLASWNTIIAGV--AS 287 (634)
Q Consensus 246 ---~~~~~~~ll~~~~~~------------------------------~---~a~~~~~~~~~~~~~~~~~li~~~--~~ 287 (634)
+..+|--.+.-+... + .+.++ .... |.... ..++.. ..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~r~~~~~~ 354 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATL-PANEM--LEERYAVSVA 354 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCC-CcchH--HHHHHhhccc
Confidence 222332222222111 0 02222 1111 21111 122211 12
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHh-C-CCCChhHHhHHH-------------
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK-G-FYSNVPVCNAIL------------- 352 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll------------- 352 (634)
.+...++...+..|.+.. +-+....-.+.......|+.++|.+++...... + ...+......+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 244555555555554431 112333333333344566666666666655542 1 111111111111
Q ss_pred -----------------hcCH---hHHHHHHHHHHHCCCCC--CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCch
Q 036704 353 -----------------QHQA---GELFRLFSLMLASQTKP--DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDV 410 (634)
Q Consensus 353 -----------------~~~~---~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (634)
.++. ..+...+....... ++ +...+..+..++.. ++.++|...+.+..... |+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch
Confidence 1111 11222222222211 23 45566666666665 78888888777777655 344
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
.....+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+.. +++...+..+......
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 3333445555688889999888887653 444556667777888888888998888888764 2233333344444455
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
.|++++|...+++..+ ..|+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6889999988888874 4567778888888888899999999888887 5555 566777888888888899999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999989988888899999999999999999888888754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=189.38 Aligned_cols=381 Identities=14% Similarity=0.112 Sum_probs=267.0
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhH-HHHHHHHH
Q 036704 148 SWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLIS-QNALIAMY 226 (634)
Q Consensus 148 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~ 226 (634)
+|+.+...+-..|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+-..+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 45555555555555555555555555432 112344555555555555555555555554443 222221 12223333
Q ss_pred HhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 227 TKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
-..|++++|...+.+..+.++ -=...|+.|...+-..|+...|+..|++..+-
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp-------------------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQP-------------------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred HhhcccchhHHHHHHHHhhCC-------------------------ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 345666666666655444322 12345666777777777777777777766543
Q ss_pred CCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036704 307 IPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKP-DHITFNDVMGA 384 (634)
Q Consensus 307 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~ 384 (634)
.|+ ...|..|-..|...+.++.|...+...... .| ....+..+...
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------------------------------rpn~A~a~gNla~i 295 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------------------------------RPNHAVAHGNLACI 295 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------------------------------CCcchhhccceEEE
Confidence 343 233444444444444444444433333221 34 34567777778
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 461 (634)
|-..|.++.|+..+++.++..+. -+..|+.+..++-..|++.+|.+.|+.... ....+.+.|...|...|.++.|.
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 88899999999999998876544 467899999999999999999999998764 44568899999999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 462 KLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 462 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
.+|....+- .|. ....+.|...|-++|++++|+..|++.. .+.|+ ...++.+...|-..|+.+.|.+.+.+.
T Consensus 375 ~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 375 RLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 999998875 565 6778899999999999999999999998 67886 567899999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 539 AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 539 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
.+.|. ...++.|...|...|+..+|+..|+.++++.|+.+.++-.++.++--..+|.+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 77775 56889999999999999999999999999999999999999877654444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-19 Score=193.00 Aligned_cols=571 Identities=11% Similarity=-0.012 Sum_probs=390.7
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHH--
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISA-- 89 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~-- 89 (634)
|.++..++.+|...|++++|+..+++..+.+|....+..+.+ .-+++++|..+++++... .|-+..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La--~i~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA--AIPVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH--HhccChhHHHHHHHHHHh--CCCChhHHHHHHHHhh
Confidence 566778899999999999999999998877775433233223 228899999999999875 44445555555554
Q ss_pred ------hhccCChhHHHHHHHHHHHcCCCCCcchhhHH-HHHHHccCChHHHHHHhccCCCCC---ccchHHHHHHHHh-
Q 036704 90 ------CSSLRSLQLGRKVHDHILSSKCQPDAVLHNHI-LNMYGKCGSLEDARMVFDEMPQRN---VVSWTAMIAGCSQ- 158 (634)
Q Consensus 90 ------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~- 158 (634)
|.+. +.|.+.++ .......|.+.+.... .+.|.+.|++++|+.+++++.+.+ ......|-.+|..
T Consensus 154 ~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 154 GQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG 229 (987)
T ss_pred ccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 4443 55555555 3322223344444444 788888888888888888876532 2234455556666
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCC-CCh---------------------
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHG-SHL--------------------- 216 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--------------------- 216 (634)
.++ +++..+++. .++-+......+...+.+.|+.++|..+++++...... |+.
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 355 666666442 23356667777888888888888888777665432111 111
Q ss_pred ---------hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh-----hccchHHHHHhcCCC--C-ChhhHH
Q 036704 217 ---------ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF-----SKLDFARTVFNEMES--P-NLASWN 279 (634)
Q Consensus 217 ---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~-----~~~~~a~~~~~~~~~--~-~~~~~~ 279 (634)
.....++..+.+.++++.++++.. ....++ ...+... .+..++...++.|-+ | +....-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~ 380 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE---MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD 380 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch---HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence 122234677888888887776643 222222 1122221 223344444444443 2 444444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhC-C-CCCCHhHHHHHHHHhcCCCCh---HHHHHH----------------------
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDR-E-LIPDGLTVRSLLCACTSPLSL---YQGMQI---------------------- 332 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~g~~---~~a~~~---------------------- 332 (634)
.+.-...+.|+.++|.++|...... + ..++.....-++..+.+.+.+ ..+..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 4555667889999999999998662 1 333444555677777766552 222222
Q ss_pred HHHHHH-hCCCCC---hh----HHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh
Q 036704 333 HSYIIK-KGFYSN---VP----VCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT 404 (634)
Q Consensus 333 ~~~~~~-~~~~~~---~~----~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 404 (634)
...... .+..|+ .. ....+..++.++|...+.+.... .|+......+...+...|++++|...++++...
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 122233 11 22233345778899977777665 466555445556667899999999999997654
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS---LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVG 481 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 481 (634)
+|+...+..+..++.+.|+.++|...++...+.++..... +.......|++++|...+++..+. .|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3344455667788899999999999999887533333333 333344559999999999999987 567888999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
+..++.+.|++++|...+++... ..| +...+..+..++...|++++|++.+++. ...| +...+..+..++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999985 345 5667788888999999999999999998 5555 6789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++++|+..++++++..|++..+....+++..+..+++.|.+-+++.-..+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999888765543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-21 Score=179.67 Aligned_cols=423 Identities=12% Similarity=0.113 Sum_probs=337.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCCcc-c--hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcC
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEMPQRNVV-S--WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGL 194 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 194 (634)
...|..-..+.|++++|++....+-+.|.. + .-.+-..+.+..+++....--....+. .+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344555566788999998877766543222 1 111223455555555544433322222 244568899999999999
Q ss_pred CCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCC
Q 036704 195 CCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPN 274 (634)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 274 (634)
|+++.|..+++.+++... .....|..+..++...|+.+.|...|.+..+-++..
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l------------------------- 183 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL------------------------- 183 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-------------------------
Confidence 999999999999998642 246788899999999999999999999887766421
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
.-..+.+...+-..|+.++|...|-+..+. .|. ...|+.|...+-..|+...|++.|++.++.
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------------- 247 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------------- 247 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------------
Confidence 112233444455679999999999887765 454 355777878888889888888888877764
Q ss_pred cCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPD-HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
.|+ ...|-.|-..|...+.++.|...+.++....+. ....+..+...|...|.++.|++.
T Consensus 248 ------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 248 ------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred ------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHH
Confidence 343 347888888999999999999999888765533 566677788889999999999999
Q ss_pred HhcCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 433 FNFMED--PDV-VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 433 ~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
|++..+ |+. ..|+.|..++-..|++.+|...|.+.... .|+ ....+.|...+...|.++.|..+|..... +
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v 383 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---V 383 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence 999874 553 48999999999999999999999999886 455 78889999999999999999999999884 5
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 509 IPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 509 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.|. ....+.|...|..+|++++|+..+++. .++|+ ...++.+...|...|+.+.|++.+.+++..+|.-+.+++.|+
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 564 567889999999999999999999998 88896 569999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 036704 586 NIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+|-..|+..+|++-++..+.-
T Consensus 464 si~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999998763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=185.90 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=178.2
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC------hhhHHHHHH
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD------VVSWSSLIV 449 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~ 449 (634)
+..+...+...|+++.|..+++++.+... .+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 44445555555666666666666554322 2445556666666666666666666665542 11 113456677
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
.+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHH
Confidence 7888899999999999988763 224567777888899999999999999998854 22222456788899999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS---SGKWEEVARLMGSMK 605 (634)
Q Consensus 530 ~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 605 (634)
+|.+.++++ ...|+...+..++..+.+.|++++|..+++++++..|++... ..+...+.. .|+.++|..+++++.
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999998 556777777889999999999999999999999999987754 444444443 468999999999999
Q ss_pred hCCCcCCCCc----------cEEEeCCeEeeec
Q 036704 606 ERGVRKVPGQ----------SWIEIQTKIHASG 628 (634)
Q Consensus 606 ~~g~~~~~~~----------~~~~~~~~~~~~~ 628 (634)
++++.++|+. .|.-....|++++
T Consensus 346 ~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 346 GEQLKRKPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred HHHHhCCCCEECCCCCCCCccceeECcCCCCcc
Confidence 9999999863 4555666555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-18 Score=170.86 Aligned_cols=572 Identities=12% Similarity=0.067 Sum_probs=414.3
Q ss_pred hHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhc-CCCCCCcccHHHHHHHhhccCChhHHHHHHH
Q 036704 28 LDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNN-TNFRIRPSTYADLISACSSLRSLQLGRKVHD 104 (634)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (634)
++.|.+.|....+.+|+..-+-+.++ ....+++..|+.+|..+... +..+||+. ..+..++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 59999999999988888777444455 44678999999999987653 33445543 334455678899999999999
Q ss_pred HHHHcCCCCCcchhhHHHHHHHcc---CChHHHHHHhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 036704 105 HILSSKCQPDAVLHNHILNMYGKC---GSLEDARMVFDEMP---QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM 178 (634)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (634)
+..+.+ |-++.++-.|.-.-... ..+..+..++...- ..|++..+.|...|...|++..++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 999875 33444443333332222 23455555555443 367888999999999999999999999998875311
Q ss_pred --CChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHH---HH
Q 036704 179 --PDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWG---SM 253 (634)
Q Consensus 179 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l 253 (634)
.-...|-.+.+++-..|++++|...|.+..+....--...+-.|...|.+.|+++.+...|+.+....+..+- .+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 2234577888999999999999999988877643333445567889999999999999999998765443222 22
Q ss_pred HHHhh-------ccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHH----hhCCCCCCHhHHHHHHHH
Q 036704 254 IDGFS-------KLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEM----GDRELIPDGLTVRSLLCA 319 (634)
Q Consensus 254 l~~~~-------~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~ 319 (634)
-..|. +.+.|..+..+..+ .|...|-.+...+....-+.. +..|... ...+-.+.+...|.+...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 22222 23567777776665 456677777777666555444 6666543 455666888899999999
Q ss_pred hcCCCChHHHHHHHHHHHHh---CCCCChh-------HHhHHH--h--cCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 036704 320 CTSPLSLYQGMQIHSYIIKK---GFYSNVP-------VCNAIL--Q--HQAGELFRLFSLMLASQTKPDHI-TFNDVMGA 384 (634)
Q Consensus 320 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~-------~~~~ll--~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~ 384 (634)
....|+++.|...|...... ...++.. -||... . ++.+.|.+.|..+... .|+-+ .|..+...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHH
Confidence 99999999999999988775 2233331 233322 2 2788899999998876 46544 34444434
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHh------
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQ------ 453 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------ 453 (634)
....+...+|...++.+....-. ++..++.+...+.+...+..|.+-|+.+. .+|..+.-.|.+.|..
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 44557788899999988866533 66677777778888888888888666554 2455555556665442
Q ss_pred ------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 454 ------FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 454 ------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.+..++|+++|.+..+.. +-|...-+.+.-.++..|++..|..+|.++.+. ......+|-.+..+|..+|+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHH
Confidence 234578889998888774 336777788888899999999999999999975 33345567789999999999
Q ss_pred hHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-------------
Q 036704 528 VHEAEDFINQM----AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS------------- 590 (634)
Q Consensus 528 ~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------------- 590 (634)
+-.|++.|+.. ..+.+..+++.|.+++...|++.+|.+.+..+....|.++.....++.+..+
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999987 3345788999999999999999999999999999999999887777665432
Q ss_pred ------cCChHHHHHHHHHHHhCCC
Q 036704 591 ------SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 ------~g~~~~A~~~~~~~~~~g~ 609 (634)
.+..+.|.++|+.|...+-
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345677788887776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-18 Score=180.58 Aligned_cols=418 Identities=13% Similarity=0.049 Sum_probs=285.1
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036704 149 WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK 228 (634)
Q Consensus 149 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 228 (634)
+......+.+.|+++.|+..|++..+. .|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566788889999999999988764 5777888888888889999999999999888764 2345677888889999
Q ss_pred cCChhHHHHHHhccCCCCcchH---HHHHHH-hhc--cchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 036704 229 FDRILDAWNVFSSIARKDITSW---GSMIDG-FSK--LDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~---~~ll~~-~~~--~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
.|++++|..-|..+...+.... ..++.. +.+ ...+...++.-+ ++...+..+.. +...........-+.+-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 9999999887765432221100 000000 000 000111111110 11111111111 111000111100000000
Q ss_pred hCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH----HhcCHhHHHHHHHHHHHCC-CCC-CHh
Q 036704 303 DRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI----LQHQAGELFRLFSLMLASQ-TKP-DHI 376 (634)
Q Consensus 303 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~a~~~~~~~~~~~-~~~-~~~ 376 (634)
+ ..+.... .....+... ..+.+++|.+.|+...+.+ ..| ...
T Consensus 285 ~--~~~~~~~------------------------------~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~ 332 (615)
T TIGR00990 285 E--LDEETGN------------------------------GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332 (615)
T ss_pred c--ccccccc------------------------------chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH
Confidence 0 0000000 000000000 0126778888888887754 233 345
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHh
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQ 453 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 453 (634)
.+..+...+...|++++|...+++..+.... ....|..+...+...|++++|...|+...+ .+...|..+...+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6777888888999999999999999877543 466788888899999999999999998753 446788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.... .+.+...++.+..++...|++++|++
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999874 335677788888999999999999999999853 33457788889999999999999999
Q ss_pred HHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 534 FINQM-AFDDDI-------V-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 534 ~~~~~-~~~~~~-------~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.|++. ...|+. . .++.....+...|++++|.+.++++++.+|++..++..++.++.+.|++++|.+.+++.
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99987 433321 1 12222233445799999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 036704 605 KER 607 (634)
Q Consensus 605 ~~~ 607 (634)
.+.
T Consensus 569 ~~l 571 (615)
T TIGR00990 569 AEL 571 (615)
T ss_pred HHH
Confidence 764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=174.41 Aligned_cols=298 Identities=13% Similarity=0.025 Sum_probs=180.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCh
Q 036704 156 CSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH---LISQNALIAMYTKFDRI 232 (634)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 232 (634)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666543 22334555566666666666666666666655432211 23566677778888888
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH--
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG-- 310 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 310 (634)
++|..+|+++.+.++ ++..+++.++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 124 ~~A~~~~~~~l~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGD-------------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHcCCc-------------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 888888877765433 45667778888888888888888888887765432221
Q ss_pred --hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 036704 311 --LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAM 388 (634)
Q Consensus 311 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 388 (634)
..+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------------------p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD-------------------------------PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------------------------------cCCHHHHHHHHHHHHHC
Confidence 122334444455555555555444443321 22234555566666777
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
|++++|.++++++.+.+......+++.++.+|.+.|++++|...++.+. .|+...+..++..+.+.|++++|..++++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777777777665443334455666666777777777777666654 25555556666666677777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 467 MRSSGVRPNHVTLVGVLTACSH---VGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 467 m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
+.+. .|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 6654 4666666666555443 34666666666666655 5555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-17 Score=177.36 Aligned_cols=187 Identities=10% Similarity=0.057 Sum_probs=111.1
Q ss_pred hhcCChHHHHHHHhcCCCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhcccCCHH
Q 036704 421 VKCGSLGSARELFNFMEDPD--VV--SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP---NHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~ 493 (634)
...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34456666666666655311 11 11113445666666666666666655432110 1223444455556666666
Q ss_pred HHHHHHHHHHHHhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 494 EGLQLYRIMQNEYG----------IIPT---RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 494 ~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
+|.++++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..++..+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666666654210 0112 123345566667777777777777776 3233 5667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+.++|++.++++++..|++..++...+..+.+.|++++|+.+++++.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-17 Score=171.41 Aligned_cols=354 Identities=12% Similarity=0.021 Sum_probs=196.9
Q ss_pred ccCChHHHHHHhccCCC------CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhH
Q 036704 127 KCGSLEDARMVFDEMPQ------RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG 200 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 200 (634)
+..+|+..--.|...++ .+......++..+.+.|+++.|..+++........ +...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 44555555555554442 12223344556667777777777777777665322 223333444444556677777
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHH
Q 036704 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNT 280 (634)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (634)
...++.+.+..+ .+...+..+...+...|++++|...+++..+.++ .+...+..
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-------------------------~~~~a~~~ 149 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-------------------------GNSQIFAL 149 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CcHHHHHH
Confidence 766666665532 2334555566666666666666666666544332 34555666
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHH
Q 036704 281 IIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELF 360 (634)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~ 360 (634)
+...+...|++++|...++.+.... |+...
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~------------------------------------------------ 179 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEV--PPRGD------------------------------------------------ 179 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--CCCHH------------------------------------------------
Confidence 6666666666666666666554331 11111
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-- 438 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 438 (634)
.+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++...+
T Consensus 180 ----------------a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 180 ----------------MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred ----------------HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11111 12334455555555555544433222333333334455555666666655555442
Q ss_pred -CChhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-Ch
Q 036704 439 -PDVVSWSSLIVGYAQFGCGEE----ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TR 512 (634)
Q Consensus 439 -~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 512 (634)
.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...++++... .| +.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~ 318 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLP 318 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 223345555666666666654 666777766652 223556666677777777777777777776643 33 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
..+..+..++.+.|++++|.+.++++ ...|+.. .+..+..++...|+.++|...|+++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45556667777777777777777766 3445432 333345566777777777777777777777653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-17 Score=173.21 Aligned_cols=417 Identities=9% Similarity=-0.023 Sum_probs=250.2
Q ss_pred CCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHH
Q 036704 77 RIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMI 153 (634)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 153 (634)
+.++....-.+.+....|+.++|.+++.+..... +.+...+..+...+.+.|++++|..++++..+ .+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444444555555566666666666666655422 33344455666666666666666666665332 2334455555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
..+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 66666666666666666666542 22333 555555566666666666666666665422 3344455666777778888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHH-----cCCCh---hHHHHHHHHHhhC-
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVA-----SCSNA---NEAMSLFSEMGDR- 304 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~- 304 (634)
+|...++.... ++..... + .......++.... ..+++ ++|++.++.+.+.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~-l-------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRD-L-------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHHHHhCCC-CHHHHHH-H-------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 88888776654 2110000 0 0000111111111 11112 3444444444322
Q ss_pred CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 036704 305 ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMG 383 (634)
Q Consensus 305 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~ 383 (634)
...|+. .|... .....+.
T Consensus 227 ~~~p~~-------------------------------------------------------------~~~~~~a~~d~l~ 245 (765)
T PRK10049 227 HDNPDA-------------------------------------------------------------TADYQRARIDRLG 245 (765)
T ss_pred ccCCcc-------------------------------------------------------------chHHHHHHHHHHH
Confidence 111110 00000 0011122
Q ss_pred HhhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-----hhhHHHHHHHHHhcC
Q 036704 384 ACAAMASLEMGTQLHCYIMKTGLA-LDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-----VVSWSSLIVGYAQFG 455 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~ 455 (634)
.+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+ |. ......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 334557777777777777766532 221 222245677777888888888777643 21 123455566777888
Q ss_pred ChHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGV-----------RPNH---VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
++++|..+++.+.+... .|+. ..+..+...+...|++++|++.++++... .+.+...+..+...
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 88888888888776521 2332 34556777888999999999999999863 34467788899999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..|+++.+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999998 55664 667777788889999999999999999999999885444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-16 Score=158.14 Aligned_cols=516 Identities=15% Similarity=0.095 Sum_probs=310.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcC--CCCCcchhhHHHHHHHccCChHHHHH
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSK--CQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
+.+.|...|....++ .+++.-.+.--.......+++..|+.+|...+... .+||+.+ .+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 368999999999885 55554444444444556789999999999977654 3455443 34456679999999999
Q ss_pred HhccCCCCCccchHHHHHHHH---h---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 137 VFDEMPQRNVVSWTAMIAGCS---Q---NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 137 ~~~~~~~~~~~~~~~li~~~~---~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
.|+...+.|+..-++++.... . ...+..+..++...-..+ .-++...+.|-+.+.-.|++..+..+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999998877665555543321 1 234455666665554432 345667788888899999999999999988876
Q ss_pred cCCC--ChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 211 EHGS--HLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 211 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
-... -...|--+.++|-..|++++|...|.+..+.+... -+..+--+...+.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~------------------------~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN------------------------FVLPLVGLGQMYIKR 355 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC------------------------ccccccchhHHHHHh
Confidence 5221 23457778999999999999999998876654321 123334455566666
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCC----ChHHHHHHHHHHHHhCCCCChhHHh----HHHhcCHhHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPL----SLYQGMQIHSYIIKKGFYSNVPVCN----AILQHQAGELF 360 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~a~ 360 (634)
|+.+.+...|+...+. .+-+..|...+.+.|+..+ ..+.|..++....+.-. .+...|- .+.+.+.-.++
T Consensus 356 ~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~sL 433 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWASL 433 (1018)
T ss_pred chHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHHH
Confidence 6666666666665543 1222344444444444433 23333333333333221 1111111 11122222223
Q ss_pred HHHH----HHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh---CCCCch------hHHHHHHHHHhhcCChH
Q 036704 361 RLFS----LMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT---GLALDV------FVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 361 ~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~ 427 (634)
..|. .+...+-.+.+...|.+.......|+++.|...+...... ...++. .+--.+...+-..++++
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 3322 2233333455555555555555666666666555555433 111111 11111222333333444
Q ss_pred ----------------------------------HHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 428 ----------------------------------SARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 428 ----------------------------------~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
+|...++.+.+ .++..++.+...+.+...+..|.+-|....+.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 44444444332 34444544555555555566666555544432
Q ss_pred C-CCCCHHHHHHHHHHhccc------------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 471 G-VRPNHVTLVGVLTACSHV------------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 471 ~-~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
- ..+|..+...|.+.|... +..++|+++|.++.+ ..+.+...-|-+.-+++..|++.+|..+|.+
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 1 124555555555544321 345677777777774 2334667777788888889999999999988
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 538 M--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI-DP-TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 538 ~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
. .......+|-.++.+|...|++..|+++|+..++. .+ +++.+...|+.++.+.|.+.+|.+.+......
T Consensus 672 VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 8 22335568888889999999999999999988873 33 47778888999999999999998888777654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-17 Score=170.12 Aligned_cols=230 Identities=12% Similarity=-0.002 Sum_probs=188.0
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC----ChhhHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP----DVVSWSSLIV 449 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~ 449 (634)
+...+..+...+...|++++|...++.+......+.. .+..+ ..+.+.|++++|...++.+.+. +...+..+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4456677778888999999999999888776654333 33333 3478899999999999987642 2334455677
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH----HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE----GLQLYRIMQNEYGIIP-TRERRSCVVDLLAR 524 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 524 (634)
.+...|++++|...++++.+.. +.+...+..+...+...|++++ |...++++... .| +...+..+...+.+
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHH
Confidence 8899999999999999999874 3357778888999999999986 89999999853 44 56788899999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.++...|++++|...++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998 4455 566788889999999999999999999999999988777778889999999999999999
Q ss_pred HHHhCCC
Q 036704 603 SMKERGV 609 (634)
Q Consensus 603 ~~~~~g~ 609 (634)
++.+...
T Consensus 377 ~al~~~P 383 (656)
T PRK15174 377 HYIQARA 383 (656)
T ss_pred HHHHhCh
Confidence 9887543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-16 Score=163.91 Aligned_cols=256 Identities=12% Similarity=0.012 Sum_probs=196.6
Q ss_pred CCChhHHHHHHHHHhhCC-CCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRE-LIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSL 365 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~ 365 (634)
.+++++|.+.|+.....+ ..|+ ...+..+...+...|++++|...++..++..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~------------------------- 361 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD------------------------- 361 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 467889999998887764 2343 3456666666777887777777776666532
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-Chh
Q 036704 366 MLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVV 442 (634)
Q Consensus 366 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~ 442 (634)
+-....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|+...+ | +..
T Consensus 362 ------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 362 ------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred ------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 223457777888888999999999999999877543 677888889999999999999999998764 3 455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-h-------H
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-E-------R 514 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~ 514 (634)
.+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.|++.... .|+. . .
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 67778888999999999999999988763 334778888899999999999999999998753 3321 1 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
++.....+...|++++|.+++++. ...| +...+..++..+...|++++|++.|+++.++.+....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 222223344579999999999986 5556 4557888999999999999999999999998776443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-15 Score=160.39 Aligned_cols=443 Identities=9% Similarity=0.044 Sum_probs=261.4
Q ss_pred hhccCChhHHHHHHHHHHHcCCCCC-cchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHH---HHHHHhCCChhHH
Q 036704 90 CSSLRSLQLGRKVHDHILSSKCQPD-AVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAM---IAGCSQNGQENAA 165 (634)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a 165 (634)
..+.|+++.|...|++..+.. +-+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 445555555555555555443 111 1222 455555555555555555555554433322222 2244445666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC
Q 036704 166 IELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK 245 (634)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 245 (634)
+++|+++.+.. +-+...+..++..+...++.++|+..++.+.... |+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 66666655542 1223333344444455555555555555554432 22333333333333344444455555555544
Q ss_pred CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 246 DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 246 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
++ .+...+..++.++.+.|-...|.++..+-... + +......+-
T Consensus 199 ~P-------------------------~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~-------- 242 (822)
T PRK14574 199 AP-------------------------TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE-------- 242 (822)
T ss_pred CC-------------------------CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------
Confidence 33 24445555556666666666666555442110 0 011110000
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHC-CCCCC-Hh----HHHHHHHHhhccccHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLAS-QTKPD-HI----TFNDVMGACAAMASLEMGTQLHC 399 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~-~~~~~-~~----~~~~ll~~~~~~~~~~~a~~~~~ 399 (634)
.+.+ ...++....++..--.. -...+.|+.-++.+... +..|. .. ...-.+-++...++..++++.++
T Consensus 243 ~~~~----a~~vr~a~~~~~~~~~r--~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 243 RDAA----AEQVRMAVLPTRSETER--FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHH----HHHHhhcccccccchhh--HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000 00011110000000000 00234455555555441 11122 11 22234457788899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 400 YIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---------DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
.+...+.+....+-.++.++|...++.++|..++..+..+ +......|.-+|...+++++|..+++.+.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9998887777788889999999999999999999987532 2223467888999999999999999999873
Q ss_pred CC-----------CCC---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036704 471 GV-----------RPN---HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFIN 536 (634)
Q Consensus 471 ~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (634)
-. .|| ...+..++..+...|++.+|++.++++.. .-+-|..+...+.+.+...|++.+|++.++
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 21 132 23345567778899999999999999975 344588888999999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 537 QM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 537 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
.. ...| +..+....+.++...|++++|..+.+.+.+..|+++.+-
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 77 5556 456777888888999999999999999999999988543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-15 Score=137.66 Aligned_cols=424 Identities=16% Similarity=0.168 Sum_probs=290.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccC--C-hhHHHHHHHHHHHcCCCCCcchhhHHHHHHHc
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLR--S-LQLGRKVHDHILSSKCQPDAVLHNHILNMYGK 127 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (634)
+..+..++..+++.-+|+.|.+. +++.+...-..|++.-+-.+ + +-.-++.|-.|.+.| ..+..+| +
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------K 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------c
Confidence 44567788888999999999887 88877776666654433222 2 222334455565555 2333333 4
Q ss_pred cCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 128 CGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 128 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
.|.+.+ ++-+....+..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+.+- ....+++.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 455544 444455567789999999999999999999999999988889999999999987543 3348899999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc
Q 036704 208 IKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS 287 (634)
Q Consensus 208 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 287 (634)
....+.||..|+|+++++..+.|+++.|.
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar--------------------------------------------------- 293 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDAR--------------------------------------------------- 293 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------------------------------
Confidence 99999999999999999999999888764
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHH-HHHHHHHHHH----hCCCCChhHHhHHHhcCHhHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQ-GMQIHSYIIK----KGFYSNVPVCNAILQHQAGELFRL 362 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~a~~~ 362 (634)
..|.+++.+|++-|+.|...+|..+|..+++.++..+ +..++..+.. ..++|-
T Consensus 294 ----~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~------------------ 351 (625)
T KOG4422|consen 294 ----KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI------------------ 351 (625)
T ss_pred ----HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC------------------
Confidence 3567888899999999999999999988888776643 3333333332 112221
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----GLALD---VFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
.+.|...|...|..|.+..+.+.|.++..-.... -+.|+ ..-|..+..+.|.....+.-...|+.
T Consensus 352 --------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 352 --------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred --------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334556788888888888988888887766521 12222 22355677778888888888888888
Q ss_pred CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC-CH--------HH-----HHH
Q 036704 436 MED----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG-LV--------EE-----GLQ 497 (634)
Q Consensus 436 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~~-----a~~ 497 (634)
|.. |+..+...++++....|.++-.-++|..++..|...+.....-++..+++.. ++ .. |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 873 7888888888888888888888888888888875555544444444444433 11 00 111
Q ss_pred HH-------HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 498 LY-------RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 498 ~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
++ .++. ....+....+.+.-.+.+.|+.++|.+++.-. +..|....+-.++.......+...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1122 22334555666777777888888888877655 2223333444555556667777777
Q ss_pred HHHHHHHHhcCC
Q 036704 564 KRAAENILKIDP 575 (634)
Q Consensus 564 ~~~~~~~~~~~p 575 (634)
..+++-+...+-
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 777777766443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-14 Score=152.57 Aligned_cols=433 Identities=9% Similarity=0.033 Sum_probs=306.2
Q ss_pred HHHHccCChHHHHHHhccCCCCCcc---chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHhhcCCC
Q 036704 123 NMYGKCGSLEDARMVFDEMPQRNVV---SWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFT---FGSIIRACSGLCC 196 (634)
Q Consensus 123 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~ 196 (634)
-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... ...+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3456889999999999998753322 23388888889999999999999887 243322 2333456778899
Q ss_pred chhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChh
Q 036704 197 VGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLA 276 (634)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 276 (634)
+++|..+++++.+....- ...+..++..+...++.++|++.++++...++ +..
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--------------------------~~~ 170 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDP--------------------------TVQ 170 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--------------------------chH
Confidence 999999999999876443 56666888899999999999999999877654 444
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
.+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++...-.. ...-.....-..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~~~~l~~ 243 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEHYRQLER 243 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHHHHHHHH
Confidence 44444444444666666999999998873 33466677788888888888887766554221 110000000011
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc---HHHHHHHHHHHHHh-CCCCch-h----HHHHHHHHHhhcCChH
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAAMAS---LEMGTQLHCYIMKT-GLALDV-F----VMNGLMDMYVKCGSLG 427 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~ 427 (634)
+.+-+..+ .+..++. ....+ .+.|..-++.+... +..|.. . ...-.+-++...|+..
T Consensus 244 ~~~a~~vr----~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 244 DAAAEQVR----MAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred HHHHHHHh----hcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 11211111 1111110 01123 34444445554432 222321 1 2223456778899999
Q ss_pred HHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 428 SARELFNFMEDP----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-----RPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 428 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
++++.|+.+..+ ...+-..+..+|...+.+++|..+++.+..... .++......|..++..++++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999842 233556788999999999999999999876531 22344457889999999999999999
Q ss_pred HHHHHHHhCC----------CCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 499 YRIMQNEYGI----------IPT---RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 499 ~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
++.+.+.... .|+ ......++..+...|++.+|++.++++ ...| |...+..+...+...|...+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 9999863120 122 123445678889999999999999999 3344 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++.++.+....|++..+....+.++...|++.+|..+.+.+.+.
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-16 Score=142.63 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=170.8
Q ss_pred HhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHH
Q 036704 384 ACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 460 (634)
.....|++++|.+.+++............||. .-.+-..|++++|++.|-.+. ..+......+.+.|....+...|
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 34467899999999999987655544444543 334677899999999998765 46777777888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
++++...... ++.|+..+..|...|-+.|+-.+|.+.+-+--+ -++.+..+..-|..-|....-+++|+.+|++. -
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999877665 344688999999999999999999987655442 45558888888999999999999999999998 7
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 540 FDDDIVVWKSLLASC-KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 540 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
++|+..-|..++..| .+.|++.+|..+|+.+....|.+...+..|+.++...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 889999999888775 568999999999999999999999999999999888774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-13 Score=131.90 Aligned_cols=522 Identities=11% Similarity=0.055 Sum_probs=366.6
Q ss_pred hHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHH
Q 036704 28 LDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHIL 107 (634)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (634)
...=.+++.+..+..|.+.. +-.+-+.-.+.+.|.-+++++.+- .+.+.. |..++++..-++.|..+++...
T Consensus 362 ~~~K~RVlRKALe~iP~sv~--LWKaAVelE~~~darilL~rAvec--cp~s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHIPRSVR--LWKAAVELEEPEDARILLERAVEC--CPQSMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHHHhCCchHH--HHHHHHhccChHHHHHHHHHHHHh--ccchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455554444444433 555555666666677777777763 333332 3445566667777888888776
Q ss_pred HcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC--------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 036704 108 SSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP--------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMP 179 (634)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (634)
+. ++.+..+|..-...=-.+|+.+...+++++-. +-+...|-.=...|-..|..-.+..+......-|+.-
T Consensus 434 e~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 EI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 65 56677777766666667777777777766532 1334455555566666677777777777777666543
Q ss_pred C--hhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh
Q 036704 180 D--QFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF 257 (634)
Q Consensus 180 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 257 (634)
. ..||..--..|.+.+.++-+..+|...++. ++.+...|...+..--..|..+.-..+|++....-+
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p---------- 581 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP---------- 581 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------
Confidence 2 246777777777888888888888777664 234455666666666667888888888877655433
Q ss_pred hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036704 258 SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYII 337 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 337 (634)
.....|-....-+-..|+...|..++....+.... +...+...+..-.....++.|..++.+..
T Consensus 582 ---------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 582 ---------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred ---------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 24445656666677778888888888877665322 45566666666666666666666665554
Q ss_pred HhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036704 338 KKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (634)
.. .|+...|.--+..---.++.++|.+++++.++.=. --...|..+.
T Consensus 646 ~~--------------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlG 692 (913)
T KOG0495|consen 646 SI--------------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLG 692 (913)
T ss_pred cc--------------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHh
Confidence 32 34444554444455556777888888877776532 2345677778
Q ss_pred HHHhhcCChHHHHHHHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 418 DMYVKCGSLGSARELFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
+.+-+.++++.|...|..-.+ |+ +..|-.|...--+.|.+..|..++++.+-++ +-+...|...|+.-.+.|+.+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 888888999999998887764 44 4568888888888899999999999988875 3368889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
|..++.++.+ ..+.+...|..-|.+..+.++-..+...+++... |+.++..+...+....++++|.+.|.++++.+
T Consensus 772 a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 772 AELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999998886 4566777888888888888887777777777653 55667778888888899999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeCCeEe
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 625 (634)
|++..+|..+-..+.+.|.-++-.+++.+.... .|.-|-.|..+.+.+.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 999999999999999999999999999988764 3455667877666554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-14 Score=129.95 Aligned_cols=362 Identities=11% Similarity=0.088 Sum_probs=239.7
Q ss_pred CCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHH
Q 036704 77 RIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGC 156 (634)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 156 (634)
+.+..+|..+|.++++--..+.|.+++++..+...+.+..+||.+|.+-.-..+-+-.-++...-..||..|+|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 44667888888888888788888888888777766777788888877654333322222222222357888888888888
Q ss_pred HhCCChh----HHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhH-hHHHHHHHHh----cCCC----ChhHHHHHH
Q 036704 157 SQNGQEN----AAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG-RQLHAHVIKS----EHGS----HLISQNALI 223 (634)
Q Consensus 157 ~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~----~~~~----~~~~~~~li 223 (634)
.+.|+++ .|.+++.+|++-|+.|...+|..+|..+++.++..+. ..++.++... .+.| |...+..-+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 8888765 4567888999999999999999999999988888653 3333333321 2222 334555667
Q ss_pred HHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 224 AMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMES--PNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
..|.+..+.+-|..+-.-....+.- +.|+. ....-|..+....|+....+.-+..|+.|
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~-------------------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNW-------------------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCch-------------------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777888888888776555433210 01110 12233566777888888999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh---HH
Q 036704 302 GDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI---TF 378 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~---~~ 378 (634)
.-+-+-|+..+...++++....|.++-.-++|..++..|... +-+-..+++..|......|+.. -+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~-----------r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF-----------RSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 988888999999999999999999999999999998876422 2233344555555555555433 22
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CChhhHH---HHHHH
Q 036704 379 NDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PDVVSWS---SLIVG 450 (634)
Q Consensus 379 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~l~~~ 450 (634)
.....-|. ..-.+.....-.++.+..+ +....+.++..+.+.|+.++|.+++..+.+ |.....| -++..
T Consensus 494 ~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 22222211 1122223333344444444 455667777778899999999998887732 3334444 44555
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 451 YAQFGCGEEALKLFRRMRSSG 471 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~ 471 (634)
-.+.+++..|...++-|...+
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcC
Confidence 666777888888888886654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-13 Score=136.99 Aligned_cols=570 Identities=10% Similarity=0.015 Sum_probs=308.5
Q ss_pred hcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHH
Q 036704 24 LCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGR 100 (634)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (634)
..|+.++|.+++.++.+++|. .|. .+...|-..|+.++++..+-.+... .+-|...|..+......+|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~-tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYY-TLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHH
Confidence 346666666666666554433 233 4555566666666666555444332 3334445566666666666666666
Q ss_pred HHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCc----cchH----HHHHHHHhCCChhHHHHHHHHH
Q 036704 101 KVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNV----VSWT----AMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~----~li~~~~~~g~~~~a~~~~~~m 172 (634)
-+|.+.++.. |++....-.-+..|-+.|+...|..-|.++.+.++ .-.. ..+..+...++-+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666654 44444444455566666666666665555543221 1111 1233444455556666665555
Q ss_pred HHC-CCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCC-CCcchH
Q 036704 173 LQS-GLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIAR-KDITSW 250 (634)
Q Consensus 173 ~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 250 (634)
... +-..+...++.+...+.+...++.+......+.....++|..-+..- ..++ .-+.-... .+..+|
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCc
Confidence 441 11223334444455555555555555444444331111111100000 0000 00000000 000111
Q ss_pred HH----HHHHhhc---cchHHHHHhcC------CCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 036704 251 GS----MIDGFSK---LDFARTVFNEM------ESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLL 317 (634)
Q Consensus 251 ~~----ll~~~~~---~~~a~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 317 (634)
.. +.-++.+ .+....+...+ +..++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 10 0111111 11111111111 12466788899999999999999999999998775555677888999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhC-CCCChh-HHhHHHh--cCHhHHHHHHHHHH--------HCCCCCCHhHHHHHHHHh
Q 036704 318 CACTSPLSLYQGMQIHSYIIKKG-FYSNVP-VCNAILQ--HQAGELFRLFSLML--------ASQTKPDHITFNDVMGAC 385 (634)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~-~~~~ll~--~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~ 385 (634)
.++-..|..+.|.+.+..++... ...|+. +..++.+ ++.++|.++++.+. ..+..|+..........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999998753 233332 3444443 39999999999854 233455566666677788
Q ss_pred hccccHHHHHHHHHHHHHhCCC-----C-----------------chhHHHHHHHHHhhcCChHHHHHHHhcCC------
Q 036704 386 AAMASLEMGTQLHCYIMKTGLA-----L-----------------DVFVMNGLMDMYVKCGSLGSARELFNFME------ 437 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~-----~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 437 (634)
...|+.++-..+...|+..... | .......++.+-.+.++.....+-...-.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 8899998877777777642211 1 11112222222223332222211111110
Q ss_pred --CCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH---HH-HHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 438 --DPDVV----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHV---TL-VGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 438 --~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
..+.. .+.-++.++++.+++++|+.+...+......- +.. .+ ...+.+.+..+++..|...++.+...+
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01111 23445667788888888888888877654211 111 22 234455667788888888888877654
Q ss_pred CCCCCh---hHHHHHHHHH-----------------------------------HhcCChHHHHHHHHhC-CCCCC-HHH
Q 036704 507 GIIPTR---ERRSCVVDLL-----------------------------------ARAGRVHEAEDFINQM-AFDDD-IVV 546 (634)
Q Consensus 507 ~~~~~~---~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~-~~~~~-~~~ 546 (634)
+...++ ..|+...+.. ...+.+.-|+..+-+. ...|| +.+
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 433322 2233111111 2245566677666555 44454 222
Q ss_pred HHHHHHHHH----------hcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 547 WKSLLASCK----------THGNVDVGKRAAENILKIDPT--NSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 547 ~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
-..++.++. ++-..-++..++++..+..-. ...++++++.+|...|-..-|..++++.+.-
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 222222221 222345667777777664433 6678999999999999999999999999863
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-13 Score=136.66 Aligned_cols=589 Identities=11% Similarity=0.054 Sum_probs=377.2
Q ss_pred ccccccccchhhHHhhcCChHHHHHHhhcccC---CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHH
Q 036704 9 CHLPRWCCEYWDAFELCMLLDQAGEVVDSFLR---RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYAD 85 (634)
Q Consensus 9 ~~l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 85 (634)
|.-|.-|..|+.+|.++|+.+++...+-..-+ .+.+.|- .+..-..+.|++++|.-.|.++.+. -|++...+.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~-~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~e 246 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK-RLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYE 246 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 34456678899999999999999998865544 4445565 5666678889999999999999985 4556666666
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhH----HHHHHHccCChHHHHHHhccCCC-----CCccchHHHHHHH
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNH----ILNMYGKCGSLEDARMVFDEMPQ-----RNVVSWTAMIAGC 156 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~ 156 (634)
-...|-+.|+...|.+.|.++.....+.|-.-... .++.+...++-+.|.+.++.... -+...++.++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 77889999999999999999998864333332333 34556667777899988887653 3455788999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh----------------------hHH----HHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 157 SQNGQENAAIELYVQMLQSGLMPDQF----------------------TFG----SIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~----------------------~~~----~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
.+..+++.+......+......+|.. .|. -++-++.+....+....+.....+.
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 99999999999998887622222221 111 2223344555556666666666666
Q ss_pred c--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC----CcchHHHHHHHh---hccchHHHHHhcCCC---CChhhH
Q 036704 211 E--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARK----DITSWGSMIDGF---SKLDFARTVFNEMES---PNLASW 278 (634)
Q Consensus 211 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~ 278 (634)
. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+-.+| ...+.|.+.++.+.. .+...-
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 6 4445678999999999999999999999988754 333454444444 556778888888775 344455
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--------CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----CCCh
Q 036704 279 NTIIAGVASCSNANEAMSLFSEMGD--------RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGF-----YSNV 345 (634)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 345 (634)
-.|...+-+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+...++.... .|+.
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5677788999999999999998642 23445555555566667788888776666555544221 1100
Q ss_pred h---HHhHHH--hcCHhHHH-----------------------HHHHHHHHCCCCCCH--hHHHHHHHHhhccccHHHHH
Q 036704 346 P---VCNAIL--QHQAGELF-----------------------RLFSLMLASQTKPDH--ITFNDVMGACAAMASLEMGT 395 (634)
Q Consensus 346 ~---~~~~ll--~~~~~~a~-----------------------~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~ 395 (634)
. .....- +.....-. ..+......|+..+. ..+.-++.++++.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 000000 00000111 111111222222222 23556667888888888888
Q ss_pred HHHHHHHHhCC--CCch---hHHHHHHHHHhhcCChHHHHHHHhcCCCC-----Ch---hhHHHHHHHHHhcCChHHHHH
Q 036704 396 QLHCYIMKTGL--ALDV---FVMNGLMDMYVKCGSLGSARELFNFMEDP-----DV---VSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 396 ~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~~a~~ 462 (634)
.+...+..... .++. ..-...+.+.+..+++..|...+..+... ++ ..|+..++.+.+.++-.--.+
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887775432 1111 22344556667778888888888877532 22 256655566666655444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH-HHHH----------hcCChHHH
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV-DLLA----------RAGRVHEA 531 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----------~~g~~~~A 531 (634)
.+..+......-++........-....+.+..|...+-++... .|+....+.++ -++. +.-..-.+
T Consensus 727 ~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG 803 (895)
T KOG2076|consen 727 LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQG 803 (895)
T ss_pred HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444333321111222222223344567888898887777643 56644444332 2221 11224455
Q ss_pred HHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------------hHHHHHHHHHhcCChH
Q 036704 532 EDFINQM-A-FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA------------ALVLLCNIYASSGKWE 595 (634)
Q Consensus 532 ~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------------~~~~l~~~~~~~g~~~ 595 (634)
..++.+. . -.+ ...++-.++++|...|=..-|...|+++++..|.+.. +-.+|.-+|.+.|+..
T Consensus 804 ~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 804 FAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 6666555 1 112 4668888999999999999999999999998765332 3445666899999999
Q ss_pred HHHHHHHH
Q 036704 596 EVARLMGS 603 (634)
Q Consensus 596 ~A~~~~~~ 603 (634)
.|.+++++
T Consensus 884 lArqil~k 891 (895)
T KOG2076|consen 884 LARQILEK 891 (895)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-12 Score=130.73 Aligned_cols=520 Identities=10% Similarity=0.035 Sum_probs=317.0
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCC
Q 036704 66 AFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRN 145 (634)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 145 (634)
++-.+... |+.|+..||..++..|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+. +|.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45555565 99999999999999999999999998 9999998888899999999999999988877665 788
Q ss_pred ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh-cCCCChhHHHHHHH
Q 036704 146 VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS-EHGSHLISQNALIA 224 (634)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 224 (634)
..+|+.|..+|.++||...-..+=+.|. .+...+...|.-.....++..+.-. +.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999999876222222122 1222222333333333322221110 122222 22444
Q ss_pred HHHhcCChhHHHHHHhccCCCCcc-hHHHHHHHhhc-c---chHHHHHhcCC-CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 225 MYTKFDRILDAWNVFSSIARKDIT-SWGSMIDGFSK-L---DFARTVFNEME-SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~-~---~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.....|-++.+.+++..++...-. ..-.+++.... . +.-....+... .|+..+|..++.+-...|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 445566666677666655532110 00011222211 1 11122222222 389999999999999999999999999
Q ss_pred HHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCH---
Q 036704 299 SEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDH--- 375 (634)
Q Consensus 299 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~--- 375 (634)
.+|++.|++.+.+-|..++.+ .++...+..+..-|...|+.|+..++...+-...+... -...+.|.+.+.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~---t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ---TKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh---hhhcccccchhhhhh
Confidence 999999999999999888866 88888999999999999999998887665532111000 111112222211
Q ss_pred -hHHHHHHHHhhccccHHH-----HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------CChh
Q 036704 376 -ITFNDVMGACAAMASLEM-----GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------PDVV 442 (634)
Q Consensus 376 -~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~ 442 (634)
..+..+.++.....+.+. ....+.+..=.|+.....+|...+. ....|+-+..+++...+.. .++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 122233333222223322 2223333333455444444444333 2335666666666666542 2223
Q ss_pred hHHHHHHHHHhcC----------------------ChHHHHHHHHHHHhC----------------CCCC-------CHH
Q 036704 443 SWSSLIVGYAQFG----------------------CGEEALKLFRRMRSS----------------GVRP-------NHV 477 (634)
Q Consensus 443 ~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~----------------~~~p-------~~~ 477 (634)
.|..++.-|.+.- +..+..+.+...+.. -..| -..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 3444433333221 111111111111000 0001 112
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-----AFDDDIVVWKSLLA 552 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~ 552 (634)
.-+.++..|++.-+..++...-+..... -+ ...|..||+.+......+.|..+.++. .+.-|..-+..+..
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 2344445555555555555444444322 22 267889999999999999999999988 33346667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeC
Q 036704 553 SCKTHGNVDVGKRAAENILK---IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQ 621 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 621 (634)
...+.+....+..+++++.+ ..|........+.......|+.+.-.++.+-+...|+..+ +.-|.-.+
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et-gPl~~vhL 607 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET-GPLWMVHL 607 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc-ccceEEEe
Confidence 89999999999999998877 3344455566666677888999999999999999998773 55565443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-10 Score=109.86 Aligned_cols=500 Identities=11% Similarity=0.036 Sum_probs=295.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHh
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVF 138 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 138 (634)
+..+|..+++...+. -|.++..+..-.+.--..|++..|+.+...-.+. ++.+..+|..-+ +....+.|..+.
T Consensus 266 DikKaR~llKSvret--nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRET--NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 455666666666654 3344445555444445556666666555444333 233444443322 233444455444
Q ss_pred ccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhH
Q 036704 139 DEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLIS 218 (634)
Q Consensus 139 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (634)
-...+..+.+-..-+.+---..+...=.+++++..+. .|+... |-.+.......+.|..++....+-- +.+.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~-- 410 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSM-- 410 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchH--
Confidence 4433322222222222222222333344555555543 244332 2233334455555666666666532 2222
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 219 QNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
-|-.+|++..-++.|..+++...+.= ..+...|.+-...--.+|+.+...+++
T Consensus 411 --dLwlAlarLetYenAkkvLNkaRe~i-------------------------ptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 411 --DLWLALARLETYENAKKVLNKAREII-------------------------PTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhC-------------------------CCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 23345555566666776666544321 245566666666666677777777666
Q ss_pred HH----HhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh--HHhHHH----h-cCHhHHHHHHHHHH
Q 036704 299 SE----MGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP--VCNAIL----Q-HQAGELFRLFSLML 367 (634)
Q Consensus 299 ~~----m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll----~-~~~~~a~~~~~~~~ 367 (634)
.+ +...|+..+..-|..=..+|-..|.+-.+..+....+..|+..... ++..-- . +..+-+..+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 54 3456777777777777777777777777777777777666543321 222111 1 14444555555554
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhH
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSW 444 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 444 (634)
+- .+.+...|......=-..|..+....+++++...-.+ ....|-.....+...|++..|..++..+.+ | +...|
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 42 1334455555555555667777777777777766543 455555666667777888888888777653 2 33466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
-.-+........++.|..+|.+.... .|+...|.--+....-.++.++|.+++++..+. ++.-...|-.+...+-+
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 66677777777788888888777764 566666666666666677788888888777753 33334466667777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.++++.|.+.|..- ..-| .+..|..+...-.+.|+.-+|..++++..-.+|++...|...+..-.+.|+.+.|..++.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888887777665 3334 455677777777777788888888888888888888888888888888888888887777
Q ss_pred HHHh
Q 036704 603 SMKE 606 (634)
Q Consensus 603 ~~~~ 606 (634)
+.++
T Consensus 778 kALQ 781 (913)
T KOG0495|consen 778 KALQ 781 (913)
T ss_pred HHHH
Confidence 6665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-13 Score=122.27 Aligned_cols=426 Identities=13% Similarity=0.107 Sum_probs=275.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHhhcCCCchhHhHHHHHHHHhcCCCCh----hHHHHHHHHH
Q 036704 152 MIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGS-IIRACSGLCCVGLGRQLHAHVIKSEHGSHL----ISQNALIAMY 226 (634)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~ 226 (634)
|..-|..+....+|+..++-+.+....|+...... +-+.+.+...+.+|.++++.....-+..+. ...+.+-..+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 34455666778889999998888888888765432 334556778888899988887776443333 3444455567
Q ss_pred HhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 227 TKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
.+.|.+++|...|+...+.. ||..+--.|+-++..-|+.++..+.|.+|..--.
T Consensus 287 iq~gqy~dainsfdh~m~~~--------------------------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~ 340 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA--------------------------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG 340 (840)
T ss_pred EecccchhhHhhHHHHHHhC--------------------------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC
Confidence 88899999999888765543 4554444445555566777788888877765432
Q ss_pred CCC------------HhHHHHHH-----HHhcCCC--ChHHHHHHHHHHHHhCCCCChh---------------------
Q 036704 307 IPD------------GLTVRSLL-----CACTSPL--SLYQGMQIHSYIIKKGFYSNVP--------------------- 346 (634)
Q Consensus 307 ~p~------------~~~~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~--------------------- 346 (634)
.|| ....+..| .-..+.+ +.+.+.-.-..++.--+.|+-.
T Consensus 341 ~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 341 EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence 222 22222222 1111111 1111111111111111222211
Q ss_pred ----HHhHHHhc-CHhHHHHHHHHHHHCCCCCCHhHHHH--HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036704 347 ----VCNAILQH-QAGELFRLFSLMLASQTKPDHITFND--VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM 419 (634)
Q Consensus 347 ----~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (634)
-...++++ +++.|.++++-+.....+.-...-+. .+.-+....++-.|.++-+......- -+......-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCce
Confidence 11112233 77777777777766543332222222 22222234456666666555543221 122222222233
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLIV---GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
....|+++.|...|.+....|...-.+|.+ .+-..|+.++|+..|-++..- +.-+...+..+...|....++.+|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 446789999999999988777665555443 366789999999999887543 2346777888889999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+++-.... -++.|+.+.+.|.+.|-+.|+-..|.+..-+- . ++.+..+..-|..-|....-+++++..|+++.-+.
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99988763 35557889999999999999999999985544 4 44477777777777888888899999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|.....-..++.++.+.|++++|.++++...++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 987776677788888999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-12 Score=117.38 Aligned_cols=397 Identities=12% Similarity=0.055 Sum_probs=259.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC-hhHHHHHHHHHHh
Q 036704 151 AMIAGCSQNGQENAAIELYVQMLQSGLMPD-QFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH-LISQNALIAMYTK 228 (634)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 228 (634)
..-.-|.++|++++|++.|.+.++. .|| +..|...-.+|...|+|+++.+.-...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888999999999988874 577 666777777778888888887777666654 333 3355555666666
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChh--------HHHHHHHH
Q 036704 229 FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNAN--------EAMSLFSE 300 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~ 300 (634)
.|++++|+.=+ |-.++..++....-.- .|.+-.++
T Consensus 196 lg~~~eal~D~-------------------------------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e 238 (606)
T KOG0547|consen 196 LGKFDEALFDV-------------------------------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKE 238 (606)
T ss_pred hccHHHHHHhh-------------------------------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 77777765311 1112222222222111 22222222
Q ss_pred Hhh-C--CCCCCHhHHHHHHHHhcCCC------ChHHHHHHHHHHHHhCCCCChhHHhHHHhc---CHhHHHHHHHHHHH
Q 036704 301 MGD-R--ELIPDGLTVRSLLCACTSPL------SLYQGMQIHSYIIKKGFYSNVPVCNAILQH---QAGELFRLFSLMLA 368 (634)
Q Consensus 301 m~~-~--g~~p~~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~a~~~~~~~~~ 368 (634)
-.+ . -+-|+.....+....+...- ..+.+...... .+..+... .+..+.+.+.+-..
T Consensus 239 ~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~-----------~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 239 KLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE-----------ALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred hhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH-----------HHHHHHhhCchhHHHHHHHHHHHhh
Confidence 222 2 24466555555554443210 00001110000 01111111 33333333333211
Q ss_pred CC-CCCC-----------HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 369 SQ-TKPD-----------HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 369 ~~-~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
.. ..++ ..++.....-+.-.|+.-.+..-++..++....++. .|--+..+|....+.++....|+..
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHH
Confidence 10 0111 111111122233467888899999999887766433 3666777899999999999999987
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 437 ED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 437 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
.+ .++.+|..-...+.-.+++++|..=|++.+.. .| +...|..+..+..+.+.++++...|++.++ .++..+
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~ 462 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCP 462 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCc
Confidence 64 45667888888888889999999999999987 44 467777788888899999999999999997 566778
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDDD---------IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
..|+.....+...++++.|.+.|+.. ...|+ +.+.-.++. +.-.+++..|.++++++++.+|....++.
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~ 541 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYE 541 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHH
Confidence 88999999999999999999999987 33333 222233332 33459999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++....++|+.++|+++|++..
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=141.69 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=114.9
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHh
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQ 453 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~ 453 (634)
..+..+...+...++.+.|...++++...+.. ++..+..++.. ...+++++|.+++...- .+++..+..++..+..
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH
Confidence 34445556677789999999999999977655 66667777777 78899999999988764 3666778888899999
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 036704 454 FGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEA 531 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 531 (634)
.++++++..+++.+.... ..++...|..+...+.+.|++++|.+.+++..+. .| +......++..+...|+.+++
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999987643 3456778888899999999999999999999964 55 577888999999999999998
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 532 EDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 532 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.++++.. ..+.|+..+..+..+|...|+.++|...++++.+..|+|+.....++.++...|+.++|.++.+++.+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888887 22446668889999999999999999999999999999999999999999999999999999887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-11 Score=123.32 Aligned_cols=574 Identities=11% Similarity=0.033 Sum_probs=310.1
Q ss_pred ccchhhHHhhcCChHHHHHHhhcccCCCCc----cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh
Q 036704 15 CCEYWDAFELCMLLDQAGEVVDSFLRRFDD----IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC 90 (634)
Q Consensus 15 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (634)
|..++--|+..|+++.|- +|..|.-++-. .++ .++.+..++++.+.+. .|.+++|..|+.+|
T Consensus 28 yqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~-~lv~sh~~And~Enpk------------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 28 YQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFR-GLVASHKEANDAENPK------------EPLADTYTNLLKAY 93 (1088)
T ss_pred HHHHHHHHcccCCCcccc-chhhhhcccccccchhHH-HHHhcccccccccCCC------------CCchhHHHHHHHHH
Confidence 666677777777777776 66665544322 232 3344444445544442 57788999999999
Q ss_pred hccCChhHHHHHHHHHH-------HcCCCCCcch--------------hhHHHHHHHccCChHHHHHHhccCC-------
Q 036704 91 SSLRSLQLGRKVHDHIL-------SSKCQPDAVL--------------HNHILNMYGKCGSLEDARMVFDEMP------- 142 (634)
Q Consensus 91 ~~~~~~~~a~~~~~~~~-------~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~------- 142 (634)
...||+.....+=+.|. ..|+.....- -...+......|-++.+++++..++
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p 173 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAP 173 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccch
Confidence 99998665222222121 1221111000 0112222333455555555553333
Q ss_pred ---------------------------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC
Q 036704 143 ---------------------------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC 195 (634)
Q Consensus 143 ---------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 195 (634)
.+++.+|.+++.+-..+|+.+.|..++.+|++.|.+.+..-|..|+-+ .+
T Consensus 174 ~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~ 250 (1088)
T KOG4318|consen 174 FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cc
Confidence 156677888888888888999999999999988888888877777765 77
Q ss_pred CchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHh-------
Q 036704 196 CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFN------- 268 (634)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~------- 268 (634)
+...+..++.-|.+.|+.|+..|+...+-.+..+|....+... .+.+...-..+..+.++-..+.+.++
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7888888888888888889888888777766665553322221 11111111222222222222222222
Q ss_pred --cCCC-------CChhhHHHHHHHHHcCCChhHHHHHHHHHhhC--CCCC-CHhHHHHHHHHhcCCCChHHHHHHHH--
Q 036704 269 --EMES-------PNLASWNTIIAGVASCSNANEAMSLFSEMGDR--ELIP-DGLTVRSLLCACTSPLSLYQGMQIHS-- 334 (634)
Q Consensus 269 --~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~-- 334 (634)
..++ ....+|...+. ....|.-++..++...|..- .+.+ +...|..++.-|.+.-.......++.
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 11244443333 33478888888888777532 2233 23446655555543222111111111
Q ss_pred HHHHh---------------CCCCChhH-------HhHHH-------------------------hc-CHhHHHHHHHHH
Q 036704 335 YIIKK---------------GFYSNVPV-------CNAIL-------------------------QH-QAGELFRLFSLM 366 (634)
Q Consensus 335 ~~~~~---------------~~~~~~~~-------~~~ll-------------------------~~-~~~~a~~~~~~~ 366 (634)
..++. ...|+... .+.+. .. +..+++..-+..
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 00111110 00000 00 111111111111
Q ss_pred HHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHH--HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----C
Q 036704 367 LASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIM--KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----P 439 (634)
Q Consensus 367 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 439 (634)
... .-+ ..|..++.-++.....+.|..+.++.. ...+..|...+..+.+.+.+.+...++..++.++.+ +
T Consensus 486 e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 111 011 457778888888888888888888876 334455677788888888899999999998888874 2
Q ss_pred C-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------------------------------CCHHHHHHHHHHhc-
Q 036704 440 D-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR------------------------------PNHVTLVGVLTACS- 487 (634)
Q Consensus 440 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~l~~~~~- 487 (634)
. ..++-.+++.....|+.+...++.+-+...|+. |.+.....+.+.+.
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 223444555566667766666666665544432 22222222222221
Q ss_pred -ccCCHHHHHHHHHHHH---------------HHhCCC---------------C---------ChhHHHHHHHHHHhcCC
Q 036704 488 -HVGLVEEGLQLYRIMQ---------------NEYGII---------------P---------TRERRSCVVDLLARAGR 527 (634)
Q Consensus 488 -~~g~~~~a~~~~~~~~---------------~~~~~~---------------~---------~~~~~~~l~~~~~~~g~ 527 (634)
...+++.+..+-.... +..|+. | +......|+..|.+.|+
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~ 722 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGR 722 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhH
Confidence 1112222221111100 000100 0 11112236678888899
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCChHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTNSAA---LVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~ 601 (634)
++.|..+|.++.+.|...+...|+..+.+.. ++.++....+++.+..|..+++ +.-.+...++....+.|.+.+
T Consensus 723 ~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f 802 (1088)
T KOG4318|consen 723 IERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCF 802 (1088)
T ss_pred HHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHH
Confidence 9999999999988888888877777776543 5566666677777766554433 333333334444445788889
Q ss_pred HHHHhCCCcCCC
Q 036704 602 GSMKERGVRKVP 613 (634)
Q Consensus 602 ~~~~~~g~~~~~ 613 (634)
.+..++..+.+.
T Consensus 803 ~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 803 ERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHccCCCcH
Confidence 988888665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-10 Score=109.03 Aligned_cols=549 Identities=12% Similarity=0.124 Sum_probs=327.4
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccC-----CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHH
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLR-----RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADL 86 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 86 (634)
|+++-.|.++...+|++..-+..|++... ++...|. ..+.-....+-++-++.+|++-.+. ++..-+--
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~-lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWD-LYLKFVESHGLPETSIRVYRRYLKV-----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchH-HHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHH
Confidence 88888888888999999999999987542 3445677 5666666777788899999988753 44457777
Q ss_pred HHHhhccCChhHHHHHHHHHHHcC------CCCCcchhhHHHHHHHccCChH---HHHHHhccCCC--CC--ccchHHHH
Q 036704 87 ISACSSLRSLQLGRKVHDHILSSK------CQPDAVLHNHILNMYGKCGSLE---DARMVFDEMPQ--RN--VVSWTAMI 153 (634)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li 153 (634)
+..++..+++++|.+.+...+... -+.+-..|..+.+...+.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 888888999999988888776432 2455566777776666543322 22333444332 22 34788999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
..|.+.|.+++|.++|++-... ..+..-|..+.++|+.-.....+..+- ...+.+..+. ..-+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~ 320 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLE 320 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHH
Confidence 9999999999999999887764 244555666666654321111111100 0000010000 011233
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC----
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD---- 309 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 309 (634)
-...-|+.+..+.+...|.++-. -...++..|..-+. +..|+..+-...|.+..+. +.|.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLR-------------Qn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~G 384 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLR-------------QNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVG 384 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHh-------------cCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCC
Confidence 33344444443333222221110 00124444544333 3346666666677666543 2221
Q ss_pred -H-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH-------h-cCHhHHHHHHHHHHHCCCCC------
Q 036704 310 -G-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-------Q-HQAGELFRLFSLMLASQTKP------ 373 (634)
Q Consensus 310 -~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~-~~~~~a~~~~~~~~~~~~~~------ 373 (634)
. ..+..+.+.|-+.|+++.|..+|++..+.....-....+... . .+++.|++++++.....-.|
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 1 235566666777788888888887777665544322222222 2 26667777666554321111
Q ss_pred -----------CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC----
Q 036704 374 -----------DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---- 438 (634)
Q Consensus 374 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 438 (634)
+...|+..+..--..|-++....+++.+++..+- ++.+.......+-...-++++.+++++-..
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1123444445555667788888899999988765 555444444455566778999999997653
Q ss_pred CChh-hHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhcccCCHHHHHHHHHHHHHHhCCCCC-
Q 036704 439 PDVV-SWSSLIVGYAQF---GCGEEALKLFRRMRSSGVRPNHVTLVGVL--TACSHVGLVEEGLQLYRIMQNEYGIIPT- 511 (634)
Q Consensus 439 ~~~~-~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 511 (634)
|++. .|+..+.-+.++ ...+.|..+|++..+ |.+|...-+..|+ ..-..-|-...|..+++++.. ++.+.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~ 620 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQ 620 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHH
Confidence 5543 677776665542 468999999999999 6666543322222 222245888889999999765 55553
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHH
Q 036704 512 -RERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVV---WKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLL 584 (634)
Q Consensus 512 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l 584 (634)
..+|+..|.-....=-+....++|++. ..-|+... .......-.+.|..+.|..+|....++.|+ +...|...
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 346776665444433344455555555 33344332 223344456788899999999888885544 66677777
Q ss_pred HHHHHhcCChHHHHHHH
Q 036704 585 CNIYASSGKWEEVARLM 601 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~ 601 (634)
-.--.+.||-+.-.+.+
T Consensus 701 k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 701 KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 77777888855444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-10 Score=105.95 Aligned_cols=458 Identities=12% Similarity=0.104 Sum_probs=222.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccC
Q 036704 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG 129 (634)
Q Consensus 50 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 129 (634)
....-..++++..|..+|+++... -.-+...+.--+..-.+......|+.++++....=...| ..|--.+-+=-..|
T Consensus 79 YaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhc
Confidence 333344455555555555555542 112222333334444445555555555555554321111 12222222223345
Q ss_pred ChHHHHHHhccCC--CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 130 SLEDARMVFDEMP--QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 130 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
++..|.++|+... +|+..+|++.|..=.+....+.|..+++...- ++|+..+|.--.+.=-+.|....+..+++..
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5555555555443 35555555555555555555555555555554 3455555555555445555555555555555
Q ss_pred HHhc--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc-----chHHH---HHHHhhccch--------HHHHHhc
Q 036704 208 IKSE--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDI-----TSWGS---MIDGFSKLDF--------ARTVFNE 269 (634)
Q Consensus 208 ~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~---ll~~~~~~~~--------a~~~~~~ 269 (634)
++.- -..+...+.+....-.++..++.|.-+|+-..+.=+ ..|.. .=.-++.... -.--++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 4421 111223333344444444555555555543322111 11111 1111111100 0000111
Q ss_pred CCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH--hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCC
Q 036704 270 MES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG--LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSN 344 (634)
Q Consensus 270 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 344 (634)
+.+ -|-.+|-..++.-...|+.+...++|+..... ++|-. ..+.-.|..+.+
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin---------------------- 370 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN---------------------- 370 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH----------------------
Confidence 111 24556666666666777888888888777654 33311 011111100000
Q ss_pred hhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHH----HHHH
Q 036704 345 VPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGL----MDMY 420 (634)
Q Consensus 345 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~ 420 (634)
..+|++ ....+++.+.++++..++. ++....++..+ ...-
T Consensus 371 ---------------YalyeE--------------------le~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 371 ---------------YALYEE--------------------LEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred ---------------HHHHHH--------------------HHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 001111 1233444555555555441 22233333322 2223
Q ss_pred hhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 421 VKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
.++.++..|.+++..... |...+|...|..-.+.++++.+..++++..+-+ +-|..+|......-...|+.+.|..+
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 455666666666665542 556666666666666677777777777777654 22456666666656666777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHH
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCK-----THG-----------NVD 561 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~-----~~g-----------~~~ 561 (634)
|+-+..+....-....|.+.|+.-...|.++.|..+++++ ...+...+|-+++..-. ..| +..
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 7766654333334455566666666677777777777766 33334445555444322 222 556
Q ss_pred HHHHHHHHHHh
Q 036704 562 VGKRAAENILK 572 (634)
Q Consensus 562 ~a~~~~~~~~~ 572 (634)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 77888887765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-11 Score=111.36 Aligned_cols=321 Identities=12% Similarity=0.036 Sum_probs=232.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh-HHhHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP-VCNAI 351 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 351 (634)
.|...+......+.+.|....|.+.|...... .+..-..|..|...+. +.+.+. ... .+...+.. ....+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~~----~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEILS----ILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHHH----HHH-hcCcccchHHHHHH
Confidence 46666666666777888889999988876543 1222233333332222 222111 111 11221111 11111
Q ss_pred H----hc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhhc
Q 036704 352 L----QH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA--LDVFVMNGLMDMYVKC 423 (634)
Q Consensus 352 l----~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 423 (634)
+ +. +.+++..-.......|.+-+...-+....+.-...++++|+.+|+++.+..+- -|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 1 11 66777777777777787777666666667777888999999999999987431 1667777776443333
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 424 GSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 424 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
.++.---...-.+.+-.+.|..++.+-|.-.++.++|..+|++..+.+ +-....|+.+..-|....+...|.+-++.+.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 333322222233445556677888888999999999999999999874 2246678888889999999999999999998
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 036704 504 NEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 504 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 580 (634)
+ +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |+..|.+|+.+|.+.++.++|+..|+++......+..+
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 4 455 7888889999999999999999999998 6666 78999999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+..|+.+|-+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=114.62 Aligned_cols=357 Identities=10% Similarity=0.064 Sum_probs=189.8
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh---hccchHHHHHhcCCCCChhhH-HHHHHHHHc
Q 036704 212 HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF---SKLDFARTVFNEMESPNLASW-NTIIAGVAS 287 (634)
Q Consensus 212 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~ 287 (634)
...|...+-..-..+-+.|....|...|......-+..|.+.+... ...+.+..+--..+..+...- -.+..++-.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445554444555566778888888888887777666666555432 222222222222222111111 123345555
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLML 367 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 367 (634)
..+.+++..-.......|.+-+...-+....+.....++++|+.+|+.+.+....-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------------ 295 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------------ 295 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------------------------
Confidence 56777777777777777766655555555555566667777777777766653210
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHH-HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhh
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLE-MGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVS 443 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 443 (634)
--|..+|+.++-.-.....+. .|..+++ =-+-.+.|+..+.+.|+-.++.+.|...|++..+.| ...
T Consensus 296 ----l~dmdlySN~LYv~~~~skLs~LA~~v~~-----idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 296 ----LDDMDLYSNVLYVKNDKSKLSYLAQNVSN-----IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred ----chhHHHHhHHHHHHhhhHHHHHHHHHHHH-----hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 112334444443222211111 1111111 011233445555555666666666666666555322 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLL 522 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 522 (634)
|+.+..-|...++...|++.+++.++-. +.|-..|-.+.++|.-.+.+.-|+-.|++... .+| |..+|.+|.++|
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECY 442 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHH
Confidence 5555566666666666666666666553 23556666666666666666666666666552 333 555666666666
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCC
Q 036704 523 ARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK-------IDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~ 593 (634)
.+.++.++|++.|.+. ..+.+...+..+++.|.+.++..+|...|++-++ ..|.-..+...|+.-+.+.++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 6666666666666665 2223445666666666666666666666666554 222222233334555556666
Q ss_pred hHHHHHHHHHHH
Q 036704 594 WEEVARLMGSMK 605 (634)
Q Consensus 594 ~~~A~~~~~~~~ 605 (634)
+++|..+.....
T Consensus 523 ~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 523 FDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHh
Confidence 666655544443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-10 Score=104.03 Aligned_cols=470 Identities=11% Similarity=0.054 Sum_probs=331.5
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC--CCcc-chHHHHHH
Q 036704 79 RPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ--RNVV-SWTAMIAG 155 (634)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~ 155 (634)
+...+.--.+--..++++..|+.+|++.+... ..+...|...+.+=.++..+..|..+++.... |.+. .|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344444455567789999999999999876 66777888888888999999999999998653 3332 45555555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 036704 156 CSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDA 235 (634)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 235 (634)
=-..|+...|.++|+...+. .|+...|.+.|+.=.+-..++.|..+++..+- +.|+...|-.....-.+.|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 55679999999999998874 79999999999999999999999999998875 458999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC---HhH
Q 036704 236 WNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD---GLT 312 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~ 312 (634)
..+++...+. ++.- .-+...+.++...-.++..++.|.-+|.-.... -|. ...
T Consensus 227 R~VyerAie~-----------~~~d-----------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL 282 (677)
T KOG1915|consen 227 RSVYERAIEF-----------LGDD-----------EEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEEL 282 (677)
T ss_pred HHHHHHHHHH-----------hhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHH
Confidence 9998764321 0000 013344555555556667777777777766654 222 222
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHH
Q 036704 313 VRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLE 392 (634)
Q Consensus 313 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 392 (634)
|......--+-|+........-. +-.--++.+...+ +.|-.++--.++.-...|+.+
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~----------------------KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVG----------------------KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhh----------------------hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 33333222223332222211100 0001122333322 556677777788888889999
Q ss_pred HHHHHHHHHHHhCCCCch------hHHHHHHHH---HhhcCChHHHHHHHhcCCC--CC-hhhHHHH----HHHHHhcCC
Q 036704 393 MGTQLHCYIMKTGLALDV------FVMNGLMDM---YVKCGSLGSARELFNFMED--PD-VVSWSSL----IVGYAQFGC 456 (634)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~---~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----~~~~~~~~~ 456 (634)
...++++.++..-++.+. ++|--+--+ -....+.+.+.++|+.+.+ |. ..||.-+ ..--.++.+
T Consensus 340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc
Confidence 999999999865433221 122211111 1346788999999987765 33 3344443 334457789
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
...|.+++...+ |..|-..+|...|..-.+.++++.+..+|++... ..| +..+|......-...|+.+.|..+|
T Consensus 420 l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 420 LTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999998877 4588999999999999999999999999999984 455 6778888888888899999999999
Q ss_pred HhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-----hcC-----------ChH
Q 036704 536 NQMAFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-----SSG-----------KWE 595 (634)
Q Consensus 536 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~ 595 (634)
+-.-.+|. ...|.+.+..-...|.++.|..+|+++++..+... +|...+.--. +.| +..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 98854553 34666666666788999999999999999887544 6777665443 344 566
Q ss_pred HHHHHHHHHHh
Q 036704 596 EVARLMGSMKE 606 (634)
Q Consensus 596 ~A~~~~~~~~~ 606 (634)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 78888887754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=117.69 Aligned_cols=246 Identities=10% Similarity=0.036 Sum_probs=187.8
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
++.+.+++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.-+. .+.+|-++.-.|...|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 5555555555555443 555566666666777778777666666666665543 67788888888888899999999999
Q ss_pred cCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-
Q 036704 435 FMEDPD---VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP- 510 (634)
Q Consensus 435 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 510 (634)
....-| ...|-.+...|+-.|..++|+..+...-+.- +-....+.-+.--|.+.++.+.|.+.|.... ++-|
T Consensus 337 Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~ 412 (611)
T KOG1173|consen 337 KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPS 412 (611)
T ss_pred HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCC
Confidence 876533 3478889999999999999999988876652 1122223334445778899999999999887 5555
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM--------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
|+...+-+.-.....+.+.+|..+|+.. +.++ -..+++.|+-+|.+.+.+++|+..+++++...|.++.++
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 6667777777777788999999998876 1111 234688899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..++-+|...|+.+.|.+.|.+.+.
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-12 Score=123.51 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=194.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHH
Q 036704 287 SCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLM 366 (634)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~ 366 (634)
..|++++|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+..+.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--------------------------- 147 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--------------------------- 147 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------
Confidence 3689999998887755432111 222333344456777777777777666543
Q ss_pred HHCCCCCCHhHHH--HHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---Ch
Q 036704 367 LASQTKPDHITFN--DVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DV 441 (634)
Q Consensus 367 ~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 441 (634)
.|+..... .....+...|+++.|...++++.+..+. ++.....+...|.+.|++++|.+++..+.+. +.
T Consensus 148 -----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 148 -----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred -----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 34433222 2356777788888888888888877754 6677777888888888888888888877641 11
Q ss_pred h--------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 442 V--------SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 442 ~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
. .|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+..
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~ 297 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDER 297 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHH
Confidence 1 2333344444455566667777776543 2446778888889999999999999999888753 44543
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.. ++.+....++.+++.+..++. ...| |+..+..+...|...|++++|.+.|+++++..|++. .+..++.++.+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~ 374 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRL 374 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc
Confidence 32 233334568899999999888 4455 566788888999999999999999999999998654 466788899999
Q ss_pred CChHHHHHHHHHHHh
Q 036704 592 GKWEEVARLMGSMKE 606 (634)
Q Consensus 592 g~~~~A~~~~~~~~~ 606 (634)
|+.++|.+++++-..
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-11 Score=118.73 Aligned_cols=281 Identities=8% Similarity=-0.049 Sum_probs=212.7
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHH-HHHHHcCCChhHHHHHHHHHhhCCCC
Q 036704 229 FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTI-IAGVASCSNANEAMSLFSEMGDRELI 307 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~ 307 (634)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+. .
T Consensus 97 eGd~~~A~k~l~~~~~~~--------------------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~ 148 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--------------------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--A 148 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--------------------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 689999988777643321 123333333 45558999999999999999764 5
Q ss_pred CCHhHHH--HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 036704 308 PDGLTVR--SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGAC 385 (634)
Q Consensus 308 p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 385 (634)
|+..... .....+...|+++.|...++.+.+.. +-+......+...+
T Consensus 149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-------------------------------P~~~~al~ll~~~~ 197 (398)
T PRK10747 149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-------------------------------PRHPEVLRLAEQAY 197 (398)
T ss_pred CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------------CCCHHHHHHHHHHH
Confidence 6654333 22445666777666666666555432 44567788889999
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchh-------HHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 036704 386 AAMASLEMGTQLHCYIMKTGLALDVF-------VMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 455 (634)
.+.|++++|..++..+.+.+..++.. .|..++.......+.+...++++.+.+ .++.....+...+...|
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999887653332 233344444455667888888888863 56778888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
+.++|.+.+++..+. .|+.... ++.+....++++++.+..+...+. .+-|......+...+.+.|++++|.+.|
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999885 4555322 234445669999999999999864 4456677889999999999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 536 NQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 536 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+.. ...|+...+..+...+.+.|+.++|.+.+++.+...
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998 778999999999999999999999999999987743
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=124.65 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=205.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHC
Q 036704 290 NANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLAS 369 (634)
Q Consensus 290 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~ 369 (634)
+..+|+..|.....+ +.-+......+..+|...++++++..+|+.+.+....-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-------------------------- 386 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-------------------------- 386 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------------------
Confidence 467888888885443 33344667778888999999999988888887643210
Q ss_pred CCCCCHhHHHHHHHHhhccccHHHHHHHHHH-HHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHH
Q 036704 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCY-IMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWS 445 (634)
Q Consensus 370 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 445 (634)
.-+..+|++.+-.+-+. -+..++.+ +.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+. ...+|+
T Consensus 387 --v~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT 459 (638)
T KOG1126|consen 387 --VKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT 459 (638)
T ss_pred --ccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh
Confidence 11233444444333221 11222222 22222 336788888888888888888888888888753 345777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLA 523 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 523 (634)
.+..-+.....+|.|...|+..+.. .| +-..|..+...|.++++++.|+-.|+++. .+.| +..+...+...+-
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQH 534 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHH
Confidence 7777788888899999999887754 22 24455566778889999999999999887 5566 5666677788888
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 524 RAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+.|+.++|+.+++++ -..| |+..--..+..+...+++++|...++++.+..|++..++..++.+|.+.|+.+.|+.-|
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 999999999999988 3334 66666667777888999999999999999999999999999999999999999999988
Q ss_pred HHHHhC
Q 036704 602 GSMKER 607 (634)
Q Consensus 602 ~~~~~~ 607 (634)
.-+.+.
T Consensus 615 ~~A~~l 620 (638)
T KOG1126|consen 615 SWALDL 620 (638)
T ss_pred HHHhcC
Confidence 877653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-11 Score=118.42 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH--HHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER---RSCVVDLLARAGRVHEAEDFINQM-AFDD-DI--VVW 547 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~--~~~ 547 (634)
+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.+++. ...| |+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 3444444445555555555555555555432 222110 011111112234455555555544 2223 23 445
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 548 KSLLASCKTHGNVDVGKRAAE--NILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++.+.+.+.|++++|.+.|+ ...+..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666 34445554333 4466666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-12 Score=122.40 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=197.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCChH-HHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGL--ALDVFVMNGLMDMYVKCGSLG-SARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~~ 431 (634)
+..+|+..|..+. ..+.-+......+..+|...+++++|..+|+.+.+... --+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 7788999998844 43455557888889999999999999999999986542 126677777664432211111 1112
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 432 LFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
+.+ .....+.+|.++.++|.-+++.+.|++.|++.++. .| ...+|+.+-.-+.....+|.|...|+... ++.|
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 221 22356779999999999999999999999999986 55 57888888888889999999999999887 4444
Q ss_pred C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 511 T-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 511 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
. -..|--+.-.|.+.++++.|+-.|+++ .+.| +......+...+.+.|+.|+|+++++++..++|.++..-..-+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 2 334455678899999999999999998 7777 566778888889999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036704 588 YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~ 606 (634)
+...+++++|+..++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 9999999999999999987
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-11 Score=116.85 Aligned_cols=283 Identities=10% Similarity=-0.028 Sum_probs=207.6
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCHh-HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh--H--HhHHH-hcCHhH
Q 036704 285 VASCSNANEAMSLFSEMGDRELIPDGL-TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP--V--CNAIL-QHQAGE 358 (634)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~--~~~ll-~~~~~~ 358 (634)
....|+++.|.+.+....+. .|++. .+.....+....|+.+.+.+.+....+....+... . ....+ +++++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 35679999999999887664 45433 34445567778899999999999887655443321 1 12222 349999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------hhcCChHHHHH
Q 036704 359 LFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMY-------VKCGSLGSARE 431 (634)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~ 431 (634)
|...++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..++......-..++ ......+...+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 4466788899999999999999999999999987653332211111111 22233455566
Q ss_pred HHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 432 LFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT--L-VGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 432 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
.++...+ .++..+..+...+...|+.++|.+.+++..+. .|+... + ..........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 6666653 47788899999999999999999999999987 444332 1 11222234457889999999888864
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 506 YGIIPTRERRSCVVDLLARAGRVHEAEDFINQ--M-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
..-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333226677899999999999999999994 3 6789998899999999999999999999999765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=128.73 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=104.6
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcC
Q 036704 380 DVMGACAAMASLEMGTQLHCYIMKTG-LALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWSSLIVGYAQFG 455 (634)
Q Consensus 380 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 455 (634)
.+...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45778889999999999997665554 3446666777777888899999999999999852 34456666666 7889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887665 356777788888899999999999999998865345667888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 536 NQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 536 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++. ...| |......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|+..+++..+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 998 5556 57788999999999999999999999999988999999999999999999999999999998864
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-09 Score=102.83 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=146.5
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWSSLIVGYAQF 454 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 454 (634)
|--+...|....+.++....|++..+.+.. ++.+|..-..++.-.+++++|..-|+.....+ ...|-.+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 556666788888888888888888887765 67777777777888889999999999887533 34566666666678
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---------hhHHHHHHHHHHhc
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---------RERRSCVVDLLARA 525 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~ 525 (634)
+.+++++..|++.+++ ++-.+..|+.....+...+++++|.+.|+.... +.|+ +.+-..++- +.-.
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhh-hchh
Confidence 8999999999999887 333478888899999999999999999998874 3443 122222222 2234
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 526 GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 526 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+++..|++++++. ...| ....+..|...-.+.|+.++|+++|++...+-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999988 6666 455888899999999999999999999876443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=100.33 Aligned_cols=267 Identities=10% Similarity=0.043 Sum_probs=131.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
.|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+..........|+.+.|..-++.+.+.+
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~---------------- 183 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT---------------- 183 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----------------
Confidence 3444445555666666666666665543222222233333333444444444444333333321
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
+-++........+|.+.|++.....++..+.+.+.-.+...-.
T Consensus 184 ---------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------- 226 (400)
T COG3071 184 ---------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------- 226 (400)
T ss_pred ---------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------
Confidence 3344455556666666666666666666666665543322100
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH
Q 036704 437 EDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS 516 (634)
Q Consensus 437 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 516 (634)
-...+|+.+++-....+..+.-...|+...++ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+ ..
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~ 299 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC 299 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH
Confidence 01123444444444444444444445444333 2333444445555555566666666665555544 44444 11
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 517 CVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
.++ ...+-++.+.-++..+.. ..+.++..+.+|...|.+.+.+.+|...++.+++..| +...|..++.++.+.|+.
T Consensus 300 ~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEP 377 (400)
T ss_pred HHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCh
Confidence 111 223344444444433333 1112335555666666666666666666666666555 444566666666666666
Q ss_pred HHHHHHHHHHH
Q 036704 595 EEVARLMGSMK 605 (634)
Q Consensus 595 ~~A~~~~~~~~ 605 (634)
++|.+..++..
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-11 Score=109.00 Aligned_cols=197 Identities=18% Similarity=0.129 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA 485 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 485 (634)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788889999999999999987753 335577888889999999999999999998874 3356777888888
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864222234556777888999999999999999988 3344 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888888999999999999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-10 Score=101.37 Aligned_cols=282 Identities=11% Similarity=-0.016 Sum_probs=183.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
.|++..|+++..+-.+.+-.| ...|..-.++.-..|+.+.+-.++.++.+....++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888877665333 3446666677778888998888888888876667777777888888889999999888
Q ss_pred HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHh-------
Q 036704 239 FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGL------- 311 (634)
Q Consensus 239 ~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 311 (634)
+.++.+..+ .++.......++|.+.|++.....++..|.+.|+--|+.
T Consensus 176 v~~ll~~~p-------------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 176 VDQLLEMTP-------------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHhCc-------------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 877665544 577788889999999999999999999999988655442
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL 391 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 391 (634)
++..++.-+...+..+.-...|+...+. .+-++..-.+++.-+...|+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-------------------------------lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-------------------------------LRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-------------------------------hhcChhHHHHHHHHHHHcCCh
Confidence 4445554444444444444444433221 133444555566666677777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++|.++..+..+.+..|+... + -...+-++...-++..+.-. ..++..+.+|...|.+++.+.+|...|+...
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred HHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777666555111 1 12233333333333222211 2333556666666666666666666666555
Q ss_pred hCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
+. .|+..+|..+..++.+.|++.+|.+..++..
T Consensus 356 ~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 356 KL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 54 5666666666666666666666666666555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=104.71 Aligned_cols=281 Identities=10% Similarity=0.010 Sum_probs=194.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+=..+++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 33334444555666667777777776665441 333334444444555555444433333333322
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
.|-...+|-++.--|...|+.++|.+++.+....+.. =...|-.+...|+-.|.-++|...+
T Consensus 308 -----------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 308 -----------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred -----------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHH
Confidence 1344567777777777788888888888887755443 2346777888888888888888888
Q ss_pred hcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCC
Q 036704 434 NFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-GII 509 (634)
Q Consensus 434 ~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 509 (634)
....+ |. ...+--+.--|.+.++.+.|.+.|....... +-|+..++-+.-.....+.+.+|..+|+.....- .+.
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 76543 11 1122233445778889999999999887652 3357777777777777899999999998876321 111
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 510 ----PTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 510 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
....+++.|..+|.+.+.+++|+..+++. -.+.+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 14456888999999999999999999988 334488899999999999999999999999999999999776666
Q ss_pred HHHHH
Q 036704 584 LCNIY 588 (634)
Q Consensus 584 l~~~~ 588 (634)
|..+.
T Consensus 529 L~~ai 533 (611)
T KOG1173|consen 529 LKLAI 533 (611)
T ss_pred HHHHH
Confidence 65544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-08 Score=101.48 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=111.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
|......+.+.+..++|...+.+..+ -.......|......+...|.+++|.+.|... ...| ++....++...+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44555667778888888888777764 23345667777778888999999999999887 6666 57789999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEE
Q 036704 557 HGNVDVGKR--AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIE 619 (634)
Q Consensus 557 ~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~ 619 (634)
.|+-.-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+-.- ..|-.+|..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs~ 794 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFSN 794 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcccccc
Confidence 998877777 99999999999999999999999999999999999998876432 334445544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-09 Score=96.24 Aligned_cols=268 Identities=9% Similarity=0.029 Sum_probs=139.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHH
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH---LISQNALIAMYTKFDRILDA 235 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 235 (634)
+.+.++|.++|-+|.+.. +-+..+--+|-+.+.+.|..|.|.++++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457777777777777632 12223334555666677777777777777665431111 22344566778888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHh----
Q 036704 236 WNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGL---- 311 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 311 (634)
+.+|..+.+.+.. -....-.|+..|-...+|++|++.-+++.+.|-.+...
T Consensus 127 E~~f~~L~de~ef-------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 127 EDIFNQLVDEGEF-------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred HHHHHHHhcchhh-------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 8888877664432 23345567888888888888888888877665443322
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhcccc
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMAS 390 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~ 390 (634)
.|..+...+....+++.|...+.+..+. .|+.+ .--.+.+.....|+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa--------------------------------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQA--------------------------------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh--------------------------------CccceehhhhhhHHHHhccc
Confidence 1222222222233333333333322221 11111 11222344445555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+ ++...-..+...-....-.+.|..++.+-.
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 555555555555555444444555555555555555555555544432 333333333333333333444444444333
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 036704 469 SSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~ 486 (634)
.. +|+...+..++..-
T Consensus 310 ~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 310 RR--KPTMRGFHRLMDYH 325 (389)
T ss_pred hh--CCcHHHHHHHHHhh
Confidence 33 45555555555433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-10 Score=98.58 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=191.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLML 367 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 367 (634)
+.+.++|.++|-+|.+.. +-+..+-.+|-+.|.+.|.++.|+.++..+.++.--+...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q--------------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ--------------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH---------------------
Confidence 478899999999998631 2223344566777888999999999988887653211110
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-----
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV----- 442 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----- 442 (634)
-....-.|..-|...|-+|.|+.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+..
T Consensus 106 ------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 106 ------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred ------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 0112334455667777788888888777764432 3445566777787888888888777766542222
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 443 ---SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 443 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
.|.-|...+....+.+.|..++.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+...|.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 3444555556667788888888888776422 2333334556677788888888888888765 4444456677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HH--hcCChH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI-YA--SSGKWE 595 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~~ 595 (634)
.+|...|+.++...++.++ ...+.......+...-....-.+.|...+.+-+...|.--. +..++.. +. ..|...
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k 335 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchh
Confidence 8888888888888888777 44455555555555555555567777777777777775443 3334333 22 335577
Q ss_pred HHHHHHHHHHhCCCcCCC
Q 036704 596 EVARLMGSMKERGVRKVP 613 (634)
Q Consensus 596 ~A~~~~~~~~~~g~~~~~ 613 (634)
+.+..++.|....++..|
T Consensus 336 ~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 336 ESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred hhHHHHHHHHHHHHhhcC
Confidence 778888888876666555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=93.95 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=148.3
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 461 (634)
.-..++++.|..+-++.++.+.. +...+-.-..++...|+.++|.-.|..... .+...|.-|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 34566777777777777665543 444454445677788899998888886653 56778999999999999999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-HHhc-ccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 462 KLFRRMRSSGVRPNHVTLVGVL-TACS-HVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 462 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.+-++.... +.-+..+...+- ..+. ...--++|.+++++.. .+.|+ ....+.+.+.+...|..+.++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776654 234556655552 3333 3334578888988877 55675 445677889999999999999999988
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 539 -AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
...||....+.|...+...+.+.+|.+.|..++.++|++..+..-+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7789999999999999999999999999999999999887666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-08 Score=91.20 Aligned_cols=442 Identities=11% Similarity=0.106 Sum_probs=245.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCC
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGS 130 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 130 (634)
+.-+....++..|+.+++.-... +-.-...+-..+..++...|++++|...+..+.+.. .++...+-.|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566777888888888766543 222222344445566677888888888888777654 5555566666666666778
Q ss_pred hHHHHHHhccCCCCCccchHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHH
Q 036704 131 LEDARMVFDEMPQRNVVSWTAMI-AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK 209 (634)
Q Consensus 131 ~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (634)
+.+|..+-...++ ....+.|+ ..-.+.++-++-..+-+.+.+. .-|
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~Ed----------------------------- 153 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LED----------------------------- 153 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHH-----------------------------
Confidence 8888777665443 22233333 3333445544444443333321 011
Q ss_pred hcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHH-HHHHHHcC
Q 036704 210 SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNT-IIAGVASC 288 (634)
Q Consensus 210 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~ 288 (634)
..+|.+..--.-.+.+|.+++.++...++ +....|. +.-+|.+.
T Consensus 154 ---------qLSLAsvhYmR~HYQeAIdvYkrvL~dn~--------------------------ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 154 ---------QLSLASVHYMRMHYQEAIDVYKRVLQDNP--------------------------EYIALNVYMALCYYKL 198 (557)
T ss_pred ---------HHhHHHHHHHHHHHHHHHHHHHHHHhcCh--------------------------hhhhhHHHHHHHHHhc
Confidence 11222222223345556666655544332 2222222 23355566
Q ss_pred CChhHHHHHHHHHhhCCCCCCH-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc------CHhHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDG-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH------QAGELFR 361 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~------~~~~a~~ 361 (634)
.-++-+.++++--.+. -||+ ...+...+...+.-+-..|..-.+.+.+.+- ..-.....++++ ..+.|++
T Consensus 199 DYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-QEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred chhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-ccchhHHHHHHcCeEEEeCCccHHH
Confidence 6666666666655443 2332 2333333333332222233333333332221 111222222222 4456666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-------ChHHHHHHHh
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-------SLGSARELFN 434 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~ 434 (634)
++-.+... -| ..-..++--|.+.+++.+|..+.+++. ...|-..+...+ .++..| .+.-|.+.|+
T Consensus 276 VLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgv--v~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 276 VLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGV--VFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHH
Confidence 65554432 22 223345556788889988888766542 111222222222 222333 3555666666
Q ss_pred cCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 435 FMED-----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 435 ~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
-.-+ ..+..-.++.+.+.-..++++++.++..+..-- .-|...-..+..+.+..|++.+|+++|-.+... .+
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i- 424 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI- 424 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-
Confidence 5432 233345566777777778899998888887653 333333345788889999999999999887632 22
Q ss_pred CChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 510 PTRERR-SCVVDLLARAGRVHEAEDFINQMAFDDDIVVW-KSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 510 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.+..+| ..|..+|.+.++++-|++++-++..+.+..++ ..+...|.+.+.+=-|-+.|..+-..+|.
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 344555 45668999999999999999888655554444 44456688889888888888888777775
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-08 Score=93.75 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=121.0
Q ss_pred cCChHHHHHHHhcCCCCC-hhhHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 423 CGSLGSARELFNFMEDPD-VVSWSSLIVGYA--QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.+..+.+.++-..+.... ...+.+++.... +...+..+.+++...-+....-........+......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345667777777766422 234444444432 22347788888888776632222455666677788899999999999
Q ss_pred H--------HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHH
Q 036704 500 R--------IMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-----AFDDD----IVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 500 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~ 562 (634)
. .+. .+...+.+...++..+.+.++.+.|..++.+. ...+. ..++..++..-.+.|+.++
T Consensus 400 ~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 444 23344566677888898988877777777665 11222 2344444555567899999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
|..+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999998865 457777664433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-10 Score=110.77 Aligned_cols=232 Identities=19% Similarity=0.182 Sum_probs=180.0
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHh-----C-CCCchhH-HHHHHHHHhhcCChHHHHHHHhcCCC--------
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKT-----G-LALDVFV-MNGLMDMYVKCGSLGSARELFNFMED-------- 438 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 438 (634)
-..|+..+...|...|+++.|...++...+. | ..|.+.+ .+.+...|...+++++|..+|+.+..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3457777999999999999999999988854 2 1223333 34477889999999999999998762
Q ss_pred --CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-
Q 036704 439 --PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSS-----G-VRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG- 507 (634)
Q Consensus 439 --~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 507 (634)
|. ..+++.|...|.+.|++++|..++++..+- | ..|. ...++.+...+...+++++|..+++...+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 22 236778888899999999998888876432 1 1223 23466777888999999999999987765533
Q ss_pred -CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 508 -IIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 508 -~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
+.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 467889999999999999999999987 1122 356888999999999999999999988765
Q ss_pred ----cC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 573 ----ID---PTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 573 ----~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.. |+...+|..|+.+|.++|++|+|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 4455688899999999999999999998876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-12 Score=81.97 Aligned_cols=50 Identities=32% Similarity=0.574 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 322 (634)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-06 Score=87.33 Aligned_cols=465 Identities=12% Similarity=0.091 Sum_probs=269.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCC--CCccchH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEMPQ--RNVVSWT----AMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRAC 191 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 191 (634)
+..+.+.|.+.|-...|++.+..+.. +.++.-+ --+-.|.-.-.++.+.+.++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55677788888988889888877653 1111111 01223444457888999999999888888877766666666
Q ss_pred hcCCCchhHhHHHHHHHHh-----------cCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc------------
Q 036704 192 SGLCCVGLGRQLHAHVIKS-----------EHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT------------ 248 (634)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------ 248 (634)
...-..+...++|+..+.. ++..|+.+.-..|.+.++.|++.+.+++.++-.--|+.
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5555555566666665432 34567778888999999999999999988654311111
Q ss_pred -------------------h--HH----HHHHHhhc----------------cchHHHHHhcCCC--CChhhHHHHHHHH
Q 036704 249 -------------------S--WG----SMIDGFSK----------------LDFARTVFNEMES--PNLASWNTIIAGV 285 (634)
Q Consensus 249 -------------------~--~~----~ll~~~~~----------------~~~a~~~~~~~~~--~~~~~~~~li~~~ 285 (634)
. |. ..|..|.+ .+-.+.+.+.+.- .....-+-|+.-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 0 00 01111100 0001111111000 1111122233333
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH-H---HHHH------HHHhCC--------------
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM-Q---IHSY------IIKKGF-------------- 341 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~---~~~~------~~~~~~-------------- 341 (634)
-+.++..--..+++.....|. -|..+++++.+.|..+++-.+-. + .++. ..++..
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 444455555555666666653 36667777766665543321111 0 0000 000000
Q ss_pred ---------------------CCChhHHhHHHhcCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHhhccccHHHHHHHH
Q 036704 342 ---------------------YSNVPVCNAILQHQAGELFRLFSLMLASQTK--PDHITFNDVMGACAAMASLEMGTQLH 398 (634)
Q Consensus 342 ---------------------~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 398 (634)
..|...|+..+...-.--..+.++..+.+++ .|+...+..+.++...+-+.+-.+++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 1112222222211111111344444444432 34455556666777777777777777
Q ss_pred HHHHHhC--CCCchhHHHHHHH---------------------------HHhhcCChHHHHHHHhcCCC-----------
Q 036704 399 CYIMKTG--LALDVFVMNGLMD---------------------------MYVKCGSLGSARELFNFMED----------- 438 (634)
Q Consensus 399 ~~~~~~~--~~~~~~~~~~l~~---------------------------~~~~~g~~~~A~~~~~~~~~----------- 438 (634)
++++-.+ +.-+...-|.|+- .....+-+++|..+|+...-
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7665211 1111112222221 22233445666666664431
Q ss_pred --------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 439 --------------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 439 --------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
..+..|+.+..+-.+.|...+|++-|-+ ..|+..|.-+++...+.|.+++-.+.+..+++
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445788888888888888888877644 23788899999999999999999999988887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+ .-.|...+ .|+-+|++.+++.+-++++. .|+..-...+..-|...|.++.|.-+|.. .+-|..|
T Consensus 1162 k-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred h-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence 6 66666554 68899999999988877764 46666777788888888888888777764 3346667
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 036704 585 CNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~ 604 (634)
+..+...|+++.|...-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 77777777777776665544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=81.73 Aligned_cols=50 Identities=26% Similarity=0.608 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 036704 144 RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSG 193 (634)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 193 (634)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-06 Score=84.22 Aligned_cols=317 Identities=12% Similarity=0.071 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH 354 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (634)
...|++|.+.|.+.|.+++|.++|++.... ..+..-|..+..+|+.-.....+..+- ...+.+..+. -..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e-------d~~ 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE-------DDV 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh-------hhh
Confidence 457999999999999999999999997765 233344445544444322111111110 0000000000 000
Q ss_pred CHhHHHHHHHHHHHCC-----------CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCC----CchhHHHHHHH
Q 036704 355 QAGELFRLFSLMLASQ-----------TKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT-GLA----LDVFVMNGLMD 418 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~~l~~ 418 (634)
+.+-.+..|+.+...+ -+-+..++..-+ -...|+..+-...+.++++. ++. .-...|..+..
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 2222333333333221 112222332222 23345666667777777642 111 11235677788
Q ss_pred HHhhcCChHHHHHHHhcCCCCChhh-------HHHHHHHHHhcCChHHHHHHHHHHHhCCCC----------C-------
Q 036704 419 MYVKCGSLGSARELFNFMEDPDVVS-------WSSLIVGYAQFGCGEEALKLFRRMRSSGVR----------P------- 474 (634)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p------- 474 (634)
.|-..|+++.|..+|++..+.+..+ |..-...-.++.+++.|+++.++....--. |
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 8888888888888888887644433 444444445667778888877776532111 1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCC-CC-HHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFD-DD-IVVWKSL 550 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~-~~~~~~l 550 (634)
+...|...++.-...|-++....+|+++..- .+- ++.+.-.....+....-++++.+++++- -++ |. ...|+..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 1234555555555667788888888888764 322 2333333444555667788888888876 222 23 3366665
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 551 LASCKT---HGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 551 ~~~~~~---~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..+.+ ....+.|..+|+++++..|+. .+.|...+..-.+-|.-..|..+++++-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555432 236788999999998888752 2344444555556688888888888754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-08 Score=98.63 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc---
Q 036704 52 SSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC--- 128 (634)
Q Consensus 52 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 128 (634)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3366778888888888776543 44445566777788888888888888888888775 44444444555554222
Q ss_pred --CChHHHHHHhccCCC--CCccchHHHHHHHHhCCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHH
Q 036704 129 --GSLEDARMVFDEMPQ--RNVVSWTAMIAGCSQNGQE-NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQL 203 (634)
Q Consensus 129 --g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (634)
.+.+....+++++.. |...+...+.-.+.....+ ..+...+..+...|+|+ +|+.|-..|....+.+-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 245555666665543 2222222222222221122 24555666667777644 344444444433333333344
Q ss_pred HHH
Q 036704 204 HAH 206 (634)
Q Consensus 204 ~~~ 206 (634)
+..
T Consensus 166 ~~~ 168 (517)
T PF12569_consen 166 VEE 168 (517)
T ss_pred HHH
Confidence 333
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-09 Score=108.65 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=170.7
Q ss_pred CHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhh---------ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 036704 355 QAGELFRLFSLMLASQTKPD-HITFNDVMGACA---------AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (634)
..++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+.++. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 345666666666654 343 334444443332 345688999999999988755 6777888888899999
Q ss_pred ChHHHHHHHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 425 SLGSARELFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 425 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
++++|...|++..+ |+ ...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 43 4578888889999999999999999999874 43 2233334445666889999999999
Q ss_pred HHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC
Q 036704 501 IMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILK---ID 574 (634)
Q Consensus 501 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 574 (634)
++... ..| +...+..+..++...|++++|.+.++++ ...|+ ....+.+...|...| +.|...++++.+ ..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98754 234 4455677888889999999999999988 44554 344555556667766 477777777766 33
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.++.. ...+|.-.|+-+.+... +++.+.|
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444433 55567777887777666 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-09 Score=96.92 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
....+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++...+ .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3456777888999999999999999999877533 567788888999999999999999997763 445577888889
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
+...|++++|...+++..+....| ....+..+...+...|++++|...+++.... .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998753223 3556777888899999999999999998863 2334667888899999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 530 EAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 530 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+|.+.+++. .. +.+...+..++..+...|+.++|....+.+....|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999987 32 33566777788888899999999999888776544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-07 Score=88.98 Aligned_cols=447 Identities=11% Similarity=0.070 Sum_probs=260.7
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+.+..-....+.+.+..|.+-..-.+.+ +..-|+-++|.+....-.+. -.-+...|+.+.-.+....++++|.++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 35566666666777767777666222444 77788999998888877763 344555677777777777889999999
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCC-CC
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSG-LM 178 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~ 178 (634)
|....+.+ +.|...+.-+.-.-+..|+++..........+ .....|..+..+.--.|+...|..++++..+.. -.
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99988876 56667776665555666777776666555543 344578888888888899999999998887754 24
Q ss_pred CChhhHHHHHHH------hhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHH
Q 036704 179 PDQFTFGSIIRA------CSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGS 252 (634)
Q Consensus 179 p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 252 (634)
|+...|...... ....|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+..+++.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd---- 251 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD---- 251 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch----
Confidence 666665443332 24566666666655443322 1111222334556677888888888888887776542
Q ss_pred HHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH-HHHHHHhhC---CCCCCHhHHHHHHHHhcCCCChHH
Q 036704 253 MIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAM-SLFSEMGDR---ELIPDGLTVRSLLCACTSPLSLYQ 328 (634)
Q Consensus 253 ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~ 328 (634)
|...|-.+..++.+-.+.-+++ .+|....+. ...|-....+. .....-.+.
T Consensus 252 ---------------------n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~ 306 (700)
T KOG1156|consen 252 ---------------------NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEI 306 (700)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHH
Confidence 2222223333332222222222 344333221 11111111111 111111222
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhc--CHhHHHHHHHHHH----HCC----------CCCCHh--HHHHHHHHhhcccc
Q 036704 329 GMQIHSYIIKKGFYSNVPVCNAILQH--QAGELFRLFSLML----ASQ----------TKPDHI--TFNDVMGACAAMAS 390 (634)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~ll~~~~~~~~ 390 (634)
..+++....+.|+.+-.....++.+. ..+-..++...+. ..| -+|+.. |+-.+...+-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 23334444444444333333333322 1111111111111 111 144443 45567788889999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRM 467 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 467 (634)
++.|...++.++++.+. -+..|..-...+...|++++|..++++..+ +|...=+--..-..+.++.++|.++....
T Consensus 387 ~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 99999999988876432 344566667888999999999999998875 33333234455567788899999999888
Q ss_pred HhCCCCC--C----HHHHHHH--HHHhcccCCHHHHHHHHHHHHHH
Q 036704 468 RSSGVRP--N----HVTLVGV--LTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 468 ~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
.+.|... + .-.|..+ ..+|.+.|++..|.+-|..+.+.
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 8876410 1 1112222 34667778887777766665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-09 Score=110.27 Aligned_cols=212 Identities=14% Similarity=0.053 Sum_probs=166.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh---------hcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCC
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYV---------KCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGC 456 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 456 (634)
+++++|...+++..+..+. +...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4578999999999877654 4555655555443 23457899999998764 355678888888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
+++|...++++.+.+ +.+...+..+...+...|++++|...++++.+ ..|+. ..+..+...+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999874 22467788888899999999999999999985 45543 23334455567789999999999
Q ss_pred HhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 536 NQM--AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 536 ~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++. ...| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 987 2235 45567778888999999999999999998899988889999998889888 4888888877653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-08 Score=95.60 Aligned_cols=439 Identities=11% Similarity=0.064 Sum_probs=228.7
Q ss_pred hhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChh
Q 036704 18 YWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQ 97 (634)
Q Consensus 18 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (634)
-+.+|..++++++|+++.+..-.|.-.....+.++++...|.-++|-++-+ +.-.=.+.|+.|.+.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----------sdgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE----------SDGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----------ccCccHHHHHHHHHcCCch
Confidence 456777777777777776665555333333345556666666666543321 1112234566777777777
Q ss_pred HHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 036704 98 LGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGL 177 (634)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (634)
.|.+....-.+ +..|......+..++.+..-+++|-.+|+++..++. .+.+|-+..-+.+|.++-+-. .
T Consensus 633 ~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa----f 701 (1636)
T KOG3616|consen 633 KAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA----F 701 (1636)
T ss_pred HHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----C
Confidence 66655322211 234555566666666666666777777766543221 233332322233333332211 0
Q ss_pred CCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh
Q 036704 178 MPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF 257 (634)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 257 (634)
+....+. -+ .--..+...|+++.|...|-+..
T Consensus 702 p~evv~l-------------------ee---------------~wg~hl~~~~q~daainhfiea~-------------- 733 (1636)
T KOG3616|consen 702 PEEVVKL-------------------EE---------------AWGDHLEQIGQLDAAINHFIEAN-------------- 733 (1636)
T ss_pred cHHHhhH-------------------HH---------------HHhHHHHHHHhHHHHHHHHHHhh--------------
Confidence 0000110 00 00111222333333333332210
Q ss_pred hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036704 258 SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYII 337 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 337 (634)
..---+.+......|.+|+.+++.++... .-..-|..+...|+..|+++.|.++|.+.
T Consensus 734 -------------------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 734 -------------------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred -------------------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 00112334455566677777776665542 22334556666666667666666655322
Q ss_pred HhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036704 338 KKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (634)
..++-.+..|.+.|+++.|.++-.+. .|...+...|-+-.
T Consensus 792 --------------------------------------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 792 --------------------------------------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKA 831 (1636)
T ss_pred --------------------------------------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhH
Confidence 12334455677777777776665443 34444555666666
Q ss_pred HHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 036704 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.-+-..|++.+|.++|-.+..|+. -|..|-++|..++.+++.++-.... -..|-..+..-+...|+++.|..
T Consensus 832 edldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHH
Confidence 667778888888888888777774 3567778888888777766532111 13455556666777788877777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC---------------CCHH--H------HHHHHHHH
Q 036704 498 LYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFD---------------DDIV--V------WKSLLASC 554 (634)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~--~------~~~l~~~~ 554 (634)
.|-+... |.+-+++|...+.|++|.++-+.-+-. .+.. . +..-+...
T Consensus 904 ~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a 973 (1636)
T KOG3616|consen 904 HFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFA 973 (1636)
T ss_pred HHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhh
Confidence 7665542 455566666667777766665543110 0100 0 01111112
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+..+.++-|..+-+-..+ ..-+.....++.-+...|++++|-+.+-+..+.
T Consensus 974 ~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 233334444444333322 123345556666777888888887776655543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=90.46 Aligned_cols=161 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLL 522 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 522 (634)
...|.-+|...|+...|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|++..+ +.| +..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3345556666666666666666666653 22355666666666666777777666666663 333 445566666666
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 036704 523 ARAGRVHEAEDFINQMAFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 66667777777666662222 24466666666666777777777777777777776666666766677777777777
Q ss_pred HHHHHHHhCC
Q 036704 599 RLMGSMKERG 608 (634)
Q Consensus 599 ~~~~~~~~~g 608 (634)
.+++.....+
T Consensus 194 ~~~~~~~~~~ 203 (250)
T COG3063 194 LYLERYQQRG 203 (250)
T ss_pred HHHHHHHhcc
Confidence 6666665544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-07 Score=89.50 Aligned_cols=478 Identities=13% Similarity=0.080 Sum_probs=274.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh---hccCChhHH-------------------HH----HHHHHHHcC
Q 036704 57 QNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC---SSLRSLQLG-------------------RK----VHDHILSSK 110 (634)
Q Consensus 57 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~----~~~~~~~~~ 110 (634)
.++.+.++.-+...... +.+.++.++-.+...+ .-.++.+++ .- .+.++....
T Consensus 240 ~~~~~~~i~s~~~~l~~-~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLR-SWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCchHHHHhhhHHhhc-ccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45566677666666655 5555555554443332 223333333 11 122222233
Q ss_pred CCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HHH
Q 036704 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFT-FGS 186 (634)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ 186 (634)
+.-++.+|..+.-++.+.|+++.+.+.|++... .....|+.+-..+...|.-..|..+++.-....-.|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677777777777788888888888877654 3345677777777788887888887776554332243333 322
Q ss_pred HHHHhh-cCCCchhHhHHHHHHHHhc--C--CCChhHHHHHHHHHHhc----C-------ChhHHHHHHhccCCCCcchH
Q 036704 187 IIRACS-GLCCVGLGRQLHAHVIKSE--H--GSHLISQNALIAMYTKF----D-------RILDAWNVFSSIARKDITSW 250 (634)
Q Consensus 187 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~~~~~~ 250 (634)
.-..|. +.+..+++..+-.++.... . ...+..|..+.-+|... . ...++.+.+++..+.|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~--- 475 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP--- 475 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC---
Confidence 233333 4566666666665555521 1 11122233333232221 0 11122233333322222
Q ss_pred HHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH
Q 036704 251 GSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM 330 (634)
Q Consensus 251 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 330 (634)
.|+..-..+.--|+..++.+.|++...+..+-+-.-+...+..+.-.+...+++..|.
T Consensus 476 ----------------------~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 476 ----------------------TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred ----------------------CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 2333333344456777889999999999888766777888888888888888999999
Q ss_pred HHHHHHHH-hCCCCChhHHhHHH---hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc------ccHHHHHHHHHH
Q 036704 331 QIHSYIIK-KGFYSNVPVCNAIL---QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAM------ASLEMGTQLHCY 400 (634)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~~ll---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~ 400 (634)
.+.+.... .|..........=+ -++.++++.+...+.. .+-.. ++-....+....
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---------------~we~~~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---------------LWEAEYGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---------------HHHhhhhHhhhhhhhhhhhhhcc
Confidence 88887654 33211111111111 1133444433333322 11111 111111111111
Q ss_pred HHH--hCCCCchhHHHHHHHHHh-h--cCChHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 401 IMK--TGLALDVFVMNGLMDMYV-K--CGSLGSARELFNFMEDPDV------VSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 401 ~~~--~~~~~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
+.- ....-...++..+..... + .-..+.....+.....|+. ..|......+.+.+..++|...+.+...
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 110 011111223332222211 1 1111111122222222332 2455667778888999999888888776
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CH
Q 036704 470 SGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAED--FINQM-AFDD-DI 544 (634)
Q Consensus 470 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~-~~ 544 (634)
.. +-....|......+...|.+++|.+.|.... .+.|+ +.+..++..++.+.|+..-|.. ++.++ ...| +.
T Consensus 679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 53 3346667776677888899999999999887 56774 6678899999999998888887 88877 6666 68
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..|..++..+.+.|+.+.|.+.|..+.++.+.+|.
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 89999999999999999999999999998877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-07 Score=88.17 Aligned_cols=424 Identities=13% Similarity=0.084 Sum_probs=236.5
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHH
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
+-..+.+...+.+.+.+.+. ++-...+.....-.+...|+.++|..........+ ..+...|..+.-.+....++++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHH
Confidence 44566777777777777763 56666677666666777788888888877776644 4455666666666666677888
Q ss_pred HHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhcCCCchhHhHHHHHHHH
Q 036704 134 ARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ-FTFGSIIRACSGLCCVGLGRQLHAHVIK 209 (634)
Q Consensus 134 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (634)
|++.+..... .|...|.-+--.-++.|+++.....-..+.+. .|+. ..|.....+.--.|+...|..+++...+
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776542 34555655555555666777666666666553 2332 3344444455555555555555555554
Q ss_pred hcC-CCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 210 SEH-GSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 210 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
... .|+...+......+- -.......
T Consensus 172 t~~~~~s~~~~e~se~~Ly-----------------------------------------------------~n~i~~E~ 198 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLY-----------------------------------------------------QNQILIEA 198 (700)
T ss_pred hhccCCCHHHHHHHHHHHH-----------------------------------------------------HHHHHHHc
Confidence 431 233222221111100 11233445
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
|..+.|++.+..-... ..|...+
T Consensus 199 g~~q~ale~L~~~e~~--i~Dkla~------------------------------------------------------- 221 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQ--IVDKLAF------------------------------------------------------- 221 (700)
T ss_pred ccHHHHHHHHHhhhhH--HHHHHHH-------------------------------------------------------
Confidence 5566666555443221 0010000
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH-HHHhcCCC-------CC
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR-ELFNFMED-------PD 440 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~-------~~ 440 (634)
-..-...+.+.+++++|..++..++..++. +...|-.+..++.+-.+.-++. .+|....+ |-
T Consensus 222 ---------~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 222 ---------EETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred ---------hhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 001112334455555555555555554422 2333333344443222222222 44444332 11
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-C------------
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-G------------ 507 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~------------ 507 (634)
....+.+ .-..-.+..-+++..+.+.|+++-...+.++ |-.-...+-..++.-.+.... |
T Consensus 292 Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 1111111 1112234555667777788766543333333 222111111111111111100 1
Q ss_pred CCCChhHHH--HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 508 IIPTRERRS--CVVDLLARAGRVHEAEDFINQM-AFDDDIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 508 ~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
-+|+...|. .++..+-+.|+++.|..+++.. ...|+.. .|..=.+.+...|+.++|...++++.+++-.|..+...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 134444443 5667888999999999999988 7677644 55566677889999999999999999998888877778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
-+.-..++++.++|.++..+..+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 88888899999999999998887774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=96.26 Aligned_cols=227 Identities=16% Similarity=0.043 Sum_probs=193.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhH-HHHHHHHHh
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSW-SSLIVGYAQ 453 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~ 453 (634)
=-.-+.++|.+.|-+.+|...++...+.- |-+.+|-.|-.+|.+..+...|+.++.+-.+ |..+|| .-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 34567789999999999999999888764 4566778888999999999999999998875 555554 446777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
.++.++|.++|+...+.. ..+......+...|.-.++++-|...|+++.+- |+ .+...|+.+.-+|.-.+.++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999998874 335666777778888899999999999999975 65 467888999999999999999999
Q ss_pred HHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 534 FINQM---AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 534 ~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.|++. ...| -..+|-.+.......||+..|.+.|+-++..+|++..++++|+..-.+.|+.++|..++....+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99987 3334 366899999999999999999999999999999999999999999999999999999999888754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=102.18 Aligned_cols=214 Identities=11% Similarity=-0.010 Sum_probs=119.0
Q ss_pred CHhHHHHHHHHHHHCC-CCCC--HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHH
Q 036704 355 QAGELFRLFSLMLASQ-TKPD--HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (634)
..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 5566666666666432 1222 234555566667777777777777777766543 56667777777777777777777
Q ss_pred HHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 432 LFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 432 ~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.|+...+ |+ ...|..+...+...|++++|.+.+++..+. .|+..........+...+++++|...+.+... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 7776643 32 345666666667777777777777777665 33322111112223345667777777755443 22
Q ss_pred CCChhHHHHHHHHHHhcCChHHH--HHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 509 IPTRERRSCVVDLLARAGRVHEA--EDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.|+...+ .++. ...|+..++ .+.+.+. ...+ ....|..++..+...|++++|+..|+++++.+|.
T Consensus 196 ~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3332221 2222 223443332 2222211 1111 2345666777777777777777777777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-07 Score=82.22 Aligned_cols=288 Identities=11% Similarity=-0.003 Sum_probs=196.0
Q ss_pred HcCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHH
Q 036704 286 ASCSNANEAMSLFSEMGDR-ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFS 364 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~ 364 (634)
+..++...|..++-.+... -++-+...+..+.+.+...|+.+++...|+.....+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d------------------------ 262 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN------------------------ 262 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC------------------------
Confidence 3344444444444333332 244456667777777777887777777776655432
Q ss_pred HHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---
Q 036704 365 LMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD--- 440 (634)
Q Consensus 365 ~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 440 (634)
|+.. ......-.+.+.|+.+....+...+....-. +...|-.-.......++++.|+.+-+...+.+
T Consensus 263 --------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 263 --------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred --------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 1111 1111112234555666655555555433211 22233333444556678999999998877543
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH-
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV- 519 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~- 519 (634)
...+-.-...+...|++++|.-.|+...... +-+...|..|+.+|...|.+.+|..+-+...+ -+..+..+...+.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGT 410 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhcc
Confidence 3344444567888999999999999988762 23689999999999999999999998888775 3444555555442
Q ss_pred HHH-HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 520 DLL-ARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 520 ~~~-~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
..+ .....-++|.+++++. ...|+ ......+...|...|.++.++.++++.+...|+ ......|++.+...+.+++
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHH
Confidence 222 2334468899999987 77775 568888999999999999999999999999884 5588999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 036704 597 VARLMGSMKERGVR 610 (634)
Q Consensus 597 A~~~~~~~~~~g~~ 610 (634)
|.+.|...++.+..
T Consensus 490 am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 490 AMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999988875543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-07 Score=90.03 Aligned_cols=230 Identities=10% Similarity=0.048 Sum_probs=145.9
Q ss_pred HHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCC--------CCCcccHHHHHHHhhc
Q 036704 21 AFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNF--------RIRPSTYADLISACSS 92 (634)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~ll~~~~~ 92 (634)
.|.--|++|.|.+.++.+... ..|. .+.+-+.+.++.+-|.-.+..|....|. .++ .+=.-+.-....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~--~vW~-nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD--SVWD-NMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh--HHHH-HHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 455669999998888887766 6788 7888888888888777666655433211 121 222223333457
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCC-ccchHHHHHHHHhCCChhHHHHHHHH
Q 036704 93 LRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRN-VVSWTAMIAGCSQNGQENAAIELYVQ 171 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 171 (634)
.|.+++|+.+|.+-... ..|=..|-..|.|++|.++-+.-.+-. ..+|......+-..++.+.|++.|++
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 79999999999887654 345667788899999999887644322 23666666777778888888888875
Q ss_pred HH----------HCCC---------CCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 172 ML----------QSGL---------MPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 172 m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
-. .... ..|...|.-.-..+-..|+.+.|+.++..... |-++++..|-.|+.
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKT 954 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCc
Confidence 32 1110 01111222222222244555555555544332 34455555666666
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
++|-++-++- .|......+.+.|-..|++.+|..+|.+.+
T Consensus 955 ~kAa~iA~es------------------------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEES------------------------------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHhc------------------------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666665542 466777788899999999999999888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-08 Score=96.52 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=103.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhC-----C-CCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDR-----E-LIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
.+...|...+++++|..+|+++... | ..|. ..+++.|-.+|.+.|++++|...++.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A---------------- 309 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA---------------- 309 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH----------------
Confidence 3556677777777777777776432 1 1222 244566666777778777777765443
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhccccHHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHhhcC
Q 036704 353 QHQAGELFRLFSLMLASQTKPDH-ITFNDVMGACAAMASLEMGTQLHCYIMKT---GLAL----DVFVMNGLMDMYVKCG 424 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g 424 (634)
+++++..... ..|.. ..++.+...|+..+.+++|..++....+. -+.+ -..+++.+...|.+.|
T Consensus 310 -------l~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 310 -------LEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred -------HHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 3344441111 12222 24566667778888888888887765532 1111 1234555666666666
Q ss_pred ChHHHHHHHhcCCC----------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCC-HHHHHHHHHHhc
Q 036704 425 SLGSARELFNFMED----------PD-VVSWSSLIVGYAQFGCGEEALKLFRRMR----SSGV-RPN-HVTLVGVLTACS 487 (634)
Q Consensus 425 ~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~-~~~~~~l~~~~~ 487 (634)
++++|.++++.+.+ +. ...++.|...|.+.+.+.+|.++|.+.. ..|. .|+ ..+|..|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 66666666555431 00 1234444555555555555555544422 1111 112 344555555555
Q ss_pred ccCCHHHHHHHHHHH
Q 036704 488 HVGLVEEGLQLYRIM 502 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~ 502 (634)
..|+++.|.++.+.+
T Consensus 462 ~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKV 476 (508)
T ss_pred HcccHHHHHHHHHHH
Confidence 555555555554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-06 Score=79.15 Aligned_cols=446 Identities=13% Similarity=0.082 Sum_probs=234.6
Q ss_pred HhhcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQL 98 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (634)
+....++..|+.+++.-..-+.. +.+.=+.-.+.+-|++++|+..|..+.+. -.++......|.....-.|.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHH
Confidence 44556788888888754432211 22201223356789999999999999875 45666666777767777888888
Q ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 036704 99 GRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM 178 (634)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (634)
|..+-... +.++-.-..++..--+.++-++-..+-+.+... ..---+|.+.....-.+.+|+++++.....+
T Consensus 110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 88775433 333333344455555667766665555544332 2222334444444557899999999988753
Q ss_pred CChhhHHHHHHH-hhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh--cCChhHHHHHHhccCCCCcchHHHHHH
Q 036704 179 PDQFTFGSIIRA-CSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK--FDRILDAWNVFSSIARKDITSWGSMID 255 (634)
Q Consensus 179 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ll~ 255 (634)
|+-...+.-+.. |.+..-++.+.+++....+.- +.+....|.......+ .|+..+++ .+++-+.....|- .+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~-f~~ 257 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP-FIE 257 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-hHH
Confidence 555555555544 457777888888887776652 2233334433333333 34433322 2222111111111 111
Q ss_pred Hh--------hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChH
Q 036704 256 GF--------SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLY 327 (634)
Q Consensus 256 ~~--------~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 327 (634)
-+ ..-+.|++++..+.+--+..--.|+-.|.+.+++.+|..+.+++.- ..|-......+..+ ..|+--
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--alGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--ALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH--Hhhhhc
Confidence 11 1123355555544443333444555667788888888887776532 12333333333222 111100
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHHHHHhCC
Q 036704 328 QGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCYIMKTGL 406 (634)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 406 (634)
...+ ...-|...|.-.-.++...|.. .-.++...+.-...++++.-+++.+..-=.
T Consensus 334 gSre-----------------------HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 334 GSRE-----------------------HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred CcHH-----------------------HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 1222223333333333333222 233444455555666776666666654433
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHH
Q 036704 407 ALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWS-SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT-LVG 481 (634)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ 481 (634)
.-|...+ .+..+++..|.+.+|+++|-++..|+ ..+|. .|.++|.+.+.++.|+.++-++.. ..+..+ ...
T Consensus 391 NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQL 466 (557)
T ss_pred Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHH
Confidence 3233333 35666777777777777777666433 33443 345666677777766655444332 112222 333
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
+...|.+.+.+--|.+.|+.+. ...|+++-|
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 4455666666666666666665 456666555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-06 Score=82.01 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=134.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhH--HHHHHH--
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNH--ILNMYG-- 126 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~-- 126 (634)
+..+.+++++++|.....++... .+-+...+..-+-++...++++.|+.+.+.- +. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHH
Confidence 44466778899999999988874 4666677888888888888998888554332 11 111111 244444
Q ss_pred ccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHhhcCCCchhHhHHH
Q 036704 127 KCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF--TFGSIIRACSGLCCVGLGRQLH 204 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~ 204 (634)
+.+..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++. +|.. .-..++.+... .. -
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~-------l~-~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA-------LQ-V 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh-------hh-H
Confidence 778999999999866555655666667788899999999999999987764 3322 11222221111 00 1
Q ss_pred HHHHHhcCCCChhHHH---HHHHHHHhcCChhHHHHHHhccC--------CCCcchHHHHHHHhhccchHHHHHhcCCCC
Q 036704 205 AHVIKSEHGSHLISQN---ALIAMYTKFDRILDAWNVFSSIA--------RKDITSWGSMIDGFSKLDFARTVFNEMESP 273 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 273 (634)
+.+......| ..+|. ...-.++..|++.+|+++++... +.|... +.+ +.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e--------------Eei-----e~ 221 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE--------------EEI-----EE 221 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch--------------hhH-----HH
Confidence 1122222233 22333 33445667899999999987752 111100 000 00
Q ss_pred Ch-hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH
Q 036704 274 NL-ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG 310 (634)
Q Consensus 274 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 310 (634)
.. ..--.|.-.+-..|+.++|.+++...++.. .+|.
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 01 112234556778899999999999988774 3444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-05 Score=80.50 Aligned_cols=544 Identities=13% Similarity=0.102 Sum_probs=294.8
Q ss_pred hhHHhhcCChHHHHHHhhcccC--CCCcc---chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 19 WDAFELCMLLDQAGEVVDSFLR--RFDDI---WDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
++...+.|=.+.|++-+..+.. +...+ .+..-+..+...-.++.+++.++.|... +++.+..+...+..-|..+
T Consensus 613 AqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~-NirqNlQi~VQvatky~eq 691 (1666)
T KOG0985|consen 613 AQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA-NIRQNLQIVVQVATKYHEQ 691 (1666)
T ss_pred HHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHH
Confidence 5666677888888888876542 21111 1112344566677788888888888876 7777766666555555554
Q ss_pred CChhHHHHHHHHHHHc-----------CCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-------------------
Q 036704 94 RSLQLGRKVHDHILSS-----------KCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------------------- 143 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------- 143 (634)
=-.+...++|+....- ++.-|+.+.--.|.+-++.|++.+..++.++-.-
T Consensus 692 lg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~Dql 771 (1666)
T KOG0985|consen 692 LGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQL 771 (1666)
T ss_pred hCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccC
Confidence 4455555555554331 2456777778889999999999999888765430
Q ss_pred C-----Ccc-chH------------HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH------------HHHHHHhhc
Q 036704 144 R-----NVV-SWT------------AMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTF------------GSIIRACSG 193 (634)
Q Consensus 144 ~-----~~~-~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------------~~ll~~~~~ 193 (634)
| |.. .-+ ..|..|.+.-++.+.-.+.-.+.+-.+. ....- ..|+.-+-+
T Consensus 772 PLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEk 850 (1666)
T KOG0985|consen 772 PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEK 850 (1666)
T ss_pred ceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHh
Confidence 1 000 011 1344444443333333333333322211 11111 122223334
Q ss_pred CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhc------------cCCCCcc-------------
Q 036704 194 LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSS------------IARKDIT------------- 248 (634)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------~~~~~~~------------- 248 (634)
.+++..-...++.....|. .|..++|+|...|...++-.+- .+++ ..++|+.
T Consensus 851 RNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred hhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 5555555666666666664 4778999999998886553321 1111 1122321
Q ss_pred ------hHHHHHHHhhc-----cch-------------HHHHHhcCC------CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 249 ------SWGSMIDGFSK-----LDF-------------ARTVFNEME------SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 249 ------~~~~ll~~~~~-----~~~-------------a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.-|++.+...+ .+. -+++.+++. ..|+..-..-+.++...+-..+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 11222222111 000 122222211 134455555666666667777777777
Q ss_pred HHHhhCCCCC--CHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc-CHhHHHHHHHHHHHCCCCCCH
Q 036704 299 SEMGDRELIP--DGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH-QAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 299 ~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~ 375 (634)
++..-..-.. +...-+.++-...+. +....+++.+.+ .......+.+..+.+ -+++|+.+|+.. ..+.
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL---dnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~ 1078 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL---DNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNV 1078 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh---ccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccH
Confidence 6654322111 111222233222222 222233332222 212222333444444 677777777765 3344
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 455 (634)
.....++. ..++++.|.++-++. -.+..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-.+....+.|
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcC
Confidence 44444443 234555555544332 25678889999999999999998877655 45557888899999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
.+++-.+++...+++.-.|... +.++-+|++.++..+-+++ -..|+......+.+-|...|.++.|.-+|
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f--------i~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF--------IAGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH--------hcCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 9999999998888876666544 4577788888877665443 22355555555666666666666665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCC-CCchhHHHHHHHHHh
Q 036704 536 NQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENI------------------------LKIDP-TNSAALVLLCNIYAS 590 (634)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------------------~~~~p-~~~~~~~~l~~~~~~ 590 (634)
.... .|..+...+...|++..|....+++ ..++- -++.-+..++.-|-.
T Consensus 1218 ~~vS------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1218 SNVS------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHhh------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 4431 2333444444444444444433332 12111 133345566666777
Q ss_pred cCChHHHHHHHHH
Q 036704 591 SGKWEEVARLMGS 603 (634)
Q Consensus 591 ~g~~~~A~~~~~~ 603 (634)
.|-++|-..+++.
T Consensus 1292 rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1292 RGYFEELISLLEA 1304 (1666)
T ss_pred cCcHHHHHHHHHh
Confidence 7777777666653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-09 Score=93.95 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=174.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccC
Q 036704 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG 129 (634)
Q Consensus 50 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 129 (634)
+-+.|.+-|-+.+|...|+...++ .|.++||..|-++|.+..++..|+.++.+-++.- |-++.......+.+...+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 456688889999999998888764 6778889999999999999999999988877652 445555556777788888
Q ss_pred ChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 130 SLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 130 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
+.++|.++++...+ -++.+..++...|.-.++++-|+..++++.+-|+ -+...|+.+--+|.-.+.+|.++.-|+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 88999988887764 3555666667777788889999999999988886 4666777777777788888888888888
Q ss_pred HHHhcCCCC--hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHH
Q 036704 207 VIKSEHGSH--LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAG 284 (634)
Q Consensus 207 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 284 (634)
....--.|+ ..+|-.+-......|++.-|.+.|+-....|. .+...+|.|.-.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-------------------------~h~ealnNLavL 438 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-------------------------QHGEALNNLAVL 438 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-------------------------chHHHHHhHHHH
Confidence 777654443 45677777777778888888888887776665 467778888888
Q ss_pred HHcCCChhHHHHHHHHHhhC
Q 036704 285 VASCSNANEAMSLFSEMGDR 304 (634)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~ 304 (634)
-.+.|+.++|..++......
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88888888888888876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-07 Score=88.83 Aligned_cols=285 Identities=14% Similarity=0.078 Sum_probs=190.9
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 222 LIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
....+...|++++|++.++.-...-+ ............+.+.|+.++|..+|..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~-------------------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~L 64 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQIL-------------------------DKLAVLEKRAELLLKLGRKEEAEKIYREL 64 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCC-------------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556788999999998876433211 23445566788899999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCCChhHHhHHH--hc--CHhHHHHHHHHHHHCCC
Q 036704 302 GDRELIPDGLTVRSLLCACT------SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL--QH--QAGELFRLFSLMLASQT 371 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~--~~~~a~~~~~~~~~~~~ 371 (634)
.+. .|+...|-..+..+. ...+.+....+++.+.+.-...+..-.-.+. .+ --..+...+..+...|+
T Consensus 65 i~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 65 IDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 887 566666554444443 2235677778888776654332222111111 22 23345566777788886
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----C----------CCCch--hHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----G----------LALDV--FVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
++ +|+.+-..|....+..-..+++...... + -+|+. .++..+...|-..|++++|++.++.
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65 4555555666666666666666665432 1 12333 2445567778889999999999997
Q ss_pred CCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 436 MED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 436 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
..+ |. +..|..-...+-+.|++.+|.+.++..+.... -|...-+-.+..+.+.|+.++|.+++....+. +..|..
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~ 297 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLS 297 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCccc
Confidence 764 44 44677778889999999999999999988763 36666667777888999999999998888765 444432
Q ss_pred hHH--------HHHHHHHHhcCChHHHHHHHHhC
Q 036704 513 ERR--------SCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 513 ~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
... .....+|.+.|++..|++.|...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 34558888999988888877655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=89.37 Aligned_cols=217 Identities=16% Similarity=0.077 Sum_probs=158.6
Q ss_pred ccccHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 036704 387 AMASLEMGTQLHCYIMKTG-LAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 460 (634)
..+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777787777432 222 245677788889999999999999998763 3467899999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 461 LKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
...|++..+. .|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++.
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999986 454 677888888899999999999999999854 454332222233345678899999999765
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 539 -AFDDDIVVWKSLLASCKTHGNVDVGKRAAENIL-------KIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
...|+...+ .......|+...+ ..++.+. +..|+.+.+|..++.++.+.|++++|...|++..+.+..
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 323332222 2333345655443 2344433 455667789999999999999999999999999987654
Q ss_pred CC
Q 036704 611 KV 612 (634)
Q Consensus 611 ~~ 612 (634)
..
T Consensus 269 ~~ 270 (296)
T PRK11189 269 NF 270 (296)
T ss_pred hH
Confidence 33
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=89.63 Aligned_cols=163 Identities=11% Similarity=0.016 Sum_probs=111.5
Q ss_pred ccccccchhhHHhhcCChHHHHHHhhcccCCCCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 11 LPRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDF--DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 11 l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
+.+.++-|++.|....+.-.|.+.|++.-+-|+..+.. .....|++..+++.|..+.-...+......-...+..+.-
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 44566788888888888889999998877665544331 4566788999999998884443332111111122333444
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccc-hHHH--HHHHHhCCChhHH
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVS-WTAM--IAGCSQNGQENAA 165 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~a 165 (634)
.+...++...+..-|+...... |.|...|..+..+|.++|++..|.++|.+....++.+ |... .-.-+..|.+.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 5667788888888888887765 6677888999999999999999999998776544432 2222 1224567888888
Q ss_pred HHHHHHHHH
Q 036704 166 IELYVQMLQ 174 (634)
Q Consensus 166 ~~~~~~m~~ 174 (634)
++.+.....
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 888877653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-05 Score=76.10 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLAS-CKTHGNVDVGKRAAENILK-IDPTNSAALVLLC 585 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 585 (634)
+-++.+...++|++|++.-..-..+|-..-|-.+..+ +.+.|+..+++.++++--. .+|.+-.+|..+.
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ 1367 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIF 1367 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHH
Confidence 3567888888999988887777777755555555444 5677888888888876433 5566655555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=96.41 Aligned_cols=219 Identities=13% Similarity=0.073 Sum_probs=176.5
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 461 (634)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.++.+.| ....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45788899999999999988766 88899999999999999999999999887633 445666677788899999999
Q ss_pred HHHHHHHhCCCC-----C---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 462 KLFRRMRSSGVR-----P---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 462 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
..++.-....++ + +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887554211 0 0000000 12333344556667777777665766888888999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 534 FINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 534 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|+.+ ..+| |...|+.|...++...+.++|++.|.+++++.|.-..+.+.|+-.|...|.|+||.+.|=+++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 6677 6779999999999999999999999999999999999999999999999999999998876654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-07 Score=77.55 Aligned_cols=192 Identities=12% Similarity=0.022 Sum_probs=83.2
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCh
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 457 (634)
+.-.|...|+...|..-+++.++..+. +..++..+...|.+.|..+.|.+.|+...+ .+-...|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 334444555555555555555544433 334444444444445555444444444331 2222334444444444444
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++.... .| .......+.....+.|++..|..++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 444444444443321111 334444444444444444444444444421 22 1223334444444444444444444
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 536 NQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 536 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+.. ...++...+...++.-...||.+.+-+.=..+....|.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 444 22234444444444444444444444444444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-06 Score=84.17 Aligned_cols=408 Identities=14% Similarity=0.075 Sum_probs=232.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCCh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH-LISQNALIAMYTKFDRI 232 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 232 (634)
.+.+..|+++.|+.+|.+..... ++|..-|+.-..+++..|++++|.+=-.+-.+ +.|+ +.-|+..-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 34567889999999998887754 34777788888888888888888765555444 3444 35677788888888899
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHH-HHHHHHH-hhCCCCCCH
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEA-MSLFSEM-GDRELIPDG 310 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~ 310 (634)
++|...|.+-.+.++ .|...++.+..++ ..+.+ .+.|..- .-.++.-++
T Consensus 87 ~eA~~ay~~GL~~d~-------------------------~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p 137 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-------------------------SNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLP 137 (539)
T ss_pred HHHHHHHHHHhhcCC-------------------------chHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcCh
Confidence 999888888777665 4677777777776 11111 1111110 001122222
Q ss_pred hHHHHH--------HHHhcCC-------CChHHHHHHHHHHHHhCCC---CChhHHhHHHhcCHh----HHHHHHHHHHH
Q 036704 311 LTVRSL--------LCACTSP-------LSLYQGMQIHSYIIKKGFY---SNVPVCNAILQHQAG----ELFRLFSLMLA 368 (634)
Q Consensus 311 ~~~~~l--------l~~~~~~-------g~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~----~a~~~~~~~~~ 368 (634)
.|-..+ +...-+. ++....++....+...+.. +.......- ...+. .......++.+
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS-MAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC-CCCcccccCCCCCccchhHH
Confidence 221111 1111000 0011111111111100000 000000000 00000 00000000000
Q ss_pred -CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-----
Q 036704 369 -SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV----- 442 (634)
Q Consensus 369 -~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----- 442 (634)
.....-..-...+.++..+..+++.+.+-+....... -+..-++....+|...|.+.++...-+...+....
T Consensus 217 e~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 0000011224566777778888999999998888776 36666677777888888877766655554321111
Q ss_pred -----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-HHH
Q 036704 443 -----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRS 516 (634)
Q Consensus 443 -----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 516 (634)
.+..+..+|.+.++++.++.+|++.......|+.. .+....+++.+..+... -+.|... -..
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 22234456777788999999998877664444321 12233344444433333 3344321 112
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
.-...+.+.|++..|+..|.++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2356677788888888888877 3334 6777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCC
Q 036704 595 EEVARLMGSMKERG 608 (634)
Q Consensus 595 ~~A~~~~~~~~~~g 608 (634)
++|++.|++.++.+
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888887776544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-08 Score=92.62 Aligned_cols=217 Identities=17% Similarity=0.091 Sum_probs=126.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-CC---ChhhHHHH-HHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-DP---DVVSWSSL-IVGY 451 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~~l-~~~~ 451 (634)
....+.+++...|..+.+. .++.+.. .|.......+...+...++-+.+..-++... ++ +..++..+ ...+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666666655432 2332222 5555555555544444344555555554332 22 11222222 2335
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCCh
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR---SCVVDLLARAGRV 528 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~ 528 (634)
...|++++|++++..- .+.......+..+.+.++++.|.+.++.|. .+..|.... .+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhH
Confidence 5567777777776532 345566666777777888888888888776 344443322 1223333333467
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 036704 529 HEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW-EEVARLMGSMK 605 (634)
Q Consensus 529 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 605 (634)
++|.-+|+++ ...+++.+++.++.++...|++++|.++++++++.+|.++.++.+++.+....|+. +.+.+++..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888887 44467777777788888888888888888888888888888888887777777776 56667777766
Q ss_pred h
Q 036704 606 E 606 (634)
Q Consensus 606 ~ 606 (634)
+
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-08 Score=91.44 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=141.1
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVG 450 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 450 (634)
.|.......+...+...++-+.+..-++........ .+..........+...|++++|+++++.. .+.......+..
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi 140 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQI 140 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHH
Confidence 455555555555454434444554444443323322 23333344456678889999999999876 556677778899
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
|.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753 33444445554443 3469999999999876 55678889999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCch
Q 036704 527 RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV-DVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 579 (634)
++++|.+++++. ...| ++.++-.++.+....|+. +.+.+.+.++....|.++.
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999987 3344 677888888888888888 7788899999999998774
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-07 Score=82.16 Aligned_cols=417 Identities=12% Similarity=0.003 Sum_probs=214.8
Q ss_pred CCcchhhHHHHHHHccCChHHHHHHhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-H
Q 036704 113 PDAVLHNHILNMYGKCGSLEDARMVFDEMPQR---NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSI-I 188 (634)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l 188 (634)
....-+++.+..+.+..++++|++++..-.+. +....+.|..+|....++..|-..++++-.. .|...-|..- .
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33344566666667777777777777655442 3345566666777777777777777777653 4554444321 1
Q ss_pred HHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHH
Q 036704 189 RACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAM--YTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTV 266 (634)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~ 266 (634)
..+.+.+.+..|.++...|... +....-..-+.+ .-..+++.. +..+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g----------------------------~rsL 134 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPG----------------------------SRSL 134 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcc----------------------------hHHH
Confidence 2222334444444444333321 100000000111 112333444 4444
Q ss_pred HhcCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCCh
Q 036704 267 FNEME-SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNV 345 (634)
Q Consensus 267 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 345 (634)
.++.+ +.+..+.+.......+.|+++.|.+-|....+-|---....|+..+. ..+.++.+.|.+..++++++|++..+
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 44444 24455555566667789999999999998876543334556776664 44678889999999999888765433
Q ss_pred hHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC
Q 036704 346 PVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS 425 (634)
Q Consensus 346 ~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (634)
...-. |...| ||... .|+.- .|..++ -...+|.-...+.+.|+
T Consensus 214 ElgIG---------------m~teg--iDvrs----------vgNt~-------~lh~Sa---l~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 214 ELGIG---------------MTTEG--IDVRS----------VGNTL-------VLHQSA---LVEAFNLKAAIEYQLRN 256 (459)
T ss_pred ccCcc---------------ceecc--Cchhc----------ccchH-------HHHHHH---HHHHhhhhhhhhhhccc
Confidence 21111 00111 11100 00000 000000 12234444555667778
Q ss_pred hHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 426 LGSARELFNFMED-----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 426 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
++.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-++-+.+... -...||..++-.||+..-++.|-.++.
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 8888887777762 5566655443221 23445555555555655532 235677777777888777777777765
Q ss_pred HHHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCH----HHHHHHHHHHHhcC
Q 036704 501 IMQNEYGIIPTRERRSCVVDLLA-RAGRVHEAEDFINQMAFDDDIVVWKSLLASC-KTHGNV----DVGKRAAENILKID 574 (634)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~----~~a~~~~~~~~~~~ 574 (634)
+-....-.-.+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+- ..+++-|++.+++.
T Consensus 335 En~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y 413 (459)
T KOG4340|consen 335 ENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY 413 (459)
T ss_pred hCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4332101112344444 333333 3346667766666551111111111111111 111111 22333344444422
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..+....++.|.+..++..+++.|+.-.+
T Consensus 414 ---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 414 ---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12556667788888888888888886654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-06 Score=76.42 Aligned_cols=315 Identities=12% Similarity=0.066 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH
Q 036704 216 LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAM 295 (634)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 295 (634)
+.-...+-..+...|++.+|+.-|....+.|+..|-++.. -...|...|+..-|+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifr-------------------------RaT~yLAmGksk~al 92 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFR-------------------------RATVYLAMGKSKAAL 92 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHH-------------------------HHHHHhhhcCCccch
Confidence 3344456667778888899988888887777654443322 234566667777777
Q ss_pred HHHHHHhhCCCCCCHhHHHH-HHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCC
Q 036704 296 SLFSEMGDRELIPDGLTVRS-LLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPD 374 (634)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~ 374 (634)
.-+....+. +||-..-.. -...+.+.|.++.|..-|+.+++....... ..++.+-+.... .
T Consensus 93 ~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----------~~eaqskl~~~~------e 154 (504)
T KOG0624|consen 93 QDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----------VLEAQSKLALIQ------E 154 (504)
T ss_pred hhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----------hHHHHHHHHhHH------H
Confidence 767666553 565432211 122355778888888777777765432211 111111111110 1
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGY 451 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 451 (634)
.......+..+...|+...|+.....+++..+ .+...+..-..+|...|++..|+.-+.... ..+..++.-+-..+
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 12334455667788899999999999887653 588888888899999999999987766554 46666777777788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHH----HHH---------HHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hh
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTL----VGV---------LTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RE 513 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~ 513 (634)
...|+.+.++...++..+. .||.... ..| +......++|.++.+..+...+. .|. ..
T Consensus 234 Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~ 308 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYN 308 (504)
T ss_pred HhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeee
Confidence 8889999999888887765 5553221 111 01112233444444444443322 222 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+..+-.++...|++.+|+....+. .+.|| ..++..-..+|.-...++.|+.-|+++.+.+|++..
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 1222333444445555555544444 33342 444444444555555555555555555555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00016 Score=81.28 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=156.9
Q ss_pred CHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHhhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHhhcCC
Q 036704 355 QAGELFRLFSLMLASQTKPD----HITFNDVMGACAAMASLEMGTQLHCYIMKT----GLA-LDVFVMNGLMDMYVKCGS 425 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 425 (634)
++++|...+++..+.-...+ ....+.+...+...|+++.|...+.+.... |.. ........+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 55555555555443211111 123445556677889999998888887643 111 112344555667788899
Q ss_pred hHHHHHHHhcCCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHhcccC
Q 036704 426 LGSARELFNFMED-------PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSG--VRPN--HVTLVGVLTACSHVG 490 (634)
Q Consensus 426 ~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~~~g 490 (634)
+++|...+++..+ ++ ...+..+...+...|++++|...+++..... ..+. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999888776542 11 1234445566777799999988888765431 1122 334444566777889
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCC
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERR-----SCVVDLLARAGRVHEAEDFINQMAFD--DDI----VVWKSLLASCKTHGN 559 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~ 559 (634)
+++.|.+.++..............+ ...+..+...|+.+.|.+++...... ... ..+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999998888875431111111111 11224445678899999988776211 111 123456777888899
Q ss_pred HHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 560 VDVGKRAAENILKID------PTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+++|...++++.... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999887632 1233467778888999999999999988887643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-06 Score=78.40 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Q 036704 53 SLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLE 132 (634)
Q Consensus 53 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 132 (634)
+.+..|+++.|+..|...... -++|...|+.-..++.+.|+++.|++--.+-++.. |.=+..|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 356778888888888888764 34566678888888888888888877666655543 333567777777777788888
Q ss_pred HHHHHhccCCCC---CccchHHHHHHH
Q 036704 133 DARMVFDEMPQR---NVVSWTAMIAGC 156 (634)
Q Consensus 133 ~A~~~~~~~~~~---~~~~~~~li~~~ 156 (634)
+|+..|.+-.+. |...++-+..++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 888888776542 333455555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-05 Score=79.13 Aligned_cols=301 Identities=8% Similarity=-0.039 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCHhHHHH-HHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRE-LIPDGLTVRS-LLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
...|..+...+...|+.+.+.+.+....+.. ..++...... ....+...|+++.|.+.++.+.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------ 73 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------ 73 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence 4456666777777787777666665544321 1222211111 1223345566666666655555432
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHH---HHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFND---VMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 428 (634)
+.+...+.. ........+..+.+.+.+.. .....| .......+...+...|++++
T Consensus 74 -------------------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 74 -------------------PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred -------------------CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 222222221 11111223334444444433 111122 22333445566677777777
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHhcccCCHHHHHHHHHHH
Q 036704 429 ARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PNH--VTLVGVLTACSHVGLVEEGLQLYRIM 502 (634)
Q Consensus 429 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 502 (634)
|...+++..+ .+...+..+...+...|++++|..++++....... |+. ..|..+...+...|++++|..++++.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776653 33445666777777778888888877776654321 222 23445666777778888888888776
Q ss_pred HHHhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 503 QNEYGIIPTRERR-S--CVVDLLARAGRVHEAEDF--I-NQM-AF---DDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 503 ~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.......+..... + .++..+...|....+.++ + ... .. ............++...|+.++|...++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5321111111111 1 223333334433333322 1 111 11 11122223566667788889999988888765
Q ss_pred cC-C--------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 573 ID-P--------TNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 573 ~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.. . .........+.++...|++++|.+.+......+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 1 134455566777889999999999998887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-07 Score=79.76 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+..|...|+++.+....+.+... . ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 34567777777765444333221 1 012235666777777777664 234567788888888889999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASC-KTHGN--VDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 5555 667777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 036704 603 SMKERGV 609 (634)
Q Consensus 603 ~~~~~g~ 609 (634)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9887554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-05 Score=81.11 Aligned_cols=253 Identities=11% Similarity=0.086 Sum_probs=137.7
Q ss_pred CcchhhHHHH--HHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCChh
Q 036704 114 DAVLHNHILN--MYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS-G--------LMPDQF 182 (634)
Q Consensus 114 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~ 182 (634)
|+.|...+++ .|..-|+.+.|.+-.+.++ +...|..|.+.|.+.++++-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555554 3566788888877766554 3456888888888888877777666666432 1 1222 1
Q ss_pred hHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccch
Q 036704 183 TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDF 262 (634)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 262 (634)
+=.-+.......|.+++|+.++.+.++.+ .|-..|-..|++++|.++-+.- |-+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~---DRi-------------- 855 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETK---DRI-------------- 855 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhc---cce--------------
Confidence 11112222346788888888888877643 3455677788888888776531 111
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHH------HHHHhcCCCChHHHHHHHHHH
Q 036704 263 ARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRS------LLCACTSPLSLYQGMQIHSYI 336 (634)
Q Consensus 263 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~------ll~~~~~~g~~~~a~~~~~~~ 336 (634)
.=..||......+-..++.+.|++.|++.... --..+.. -|.-|.+..+-+.....|.+.
T Consensus 856 ----------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY 921 (1416)
T KOG3617|consen 856 ----------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY 921 (1416)
T ss_pred ----------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence 11234555566666667777777777654211 1111111 122222222222222222222
Q ss_pred HHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 036704 337 IKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGL 416 (634)
Q Consensus 337 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (634)
++. .+..+.|+..|....+ |-++++..|-.|+.++|.++-++- -|....-.+
T Consensus 922 lES-------------~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhl 973 (1416)
T KOG3617|consen 922 LES-------------VGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHL 973 (1416)
T ss_pred Hhc-------------ccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHH
Confidence 221 1255555555554432 345556666667777666664432 244555556
Q ss_pred HHHHhhcCChHHHHHHHhcCC
Q 036704 417 MDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~ 437 (634)
...|-..|++.+|..+|.+..
T Consensus 974 aR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHH
Confidence 667777777777777666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-06 Score=74.60 Aligned_cols=285 Identities=11% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIP-DGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
+++.+..+.+..+++.|++++..-.++ .| +...++.+..+|....++..|-..++++-...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---------------- 74 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---------------- 74 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------------
Confidence 566677778888999999998876655 44 66677888888888888888888888776542
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHH-HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH--HHHhhcCChHHHHHHH
Q 036704 357 GELFRLFSLMLASQTKPDHITFND-VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM--DMYVKCGSLGSARELF 433 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~ 433 (634)
|...-|.. -...+-+.+.+..|.++...|.+. +....-..-+ ......+++..+..++
T Consensus 75 ----------------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 75 ----------------PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ----------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 22221111 112333444445555555444331 1111100001 1122445666666666
Q ss_pred hcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC---
Q 036704 434 NFME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII--- 509 (634)
Q Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 509 (634)
++.. +.+..+.+.......+.|+++.|.+-|+...+-+---....|+..+. ..+.|+++.|.++..++..+ |++
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HP 213 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHP 213 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCC
Confidence 6665 34444444444455566666666666666555432222344444333 33446666666666666544 433
Q ss_pred ----------CCh---------------hHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCH
Q 036704 510 ----------PTR---------------ERRSCVVDLLARAGRVHEAEDFINQM----AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 510 ----------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
||+ ..+|.-...+.+.|+++.|.+.+.+| ....|+.|++.+.-.= ..++.
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 111 11222233445778888888888888 2334777777665432 23455
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
-...+-+.-+++.+|-.+.++..+.-+||+..-++-|..++-
T Consensus 293 ~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 556666667777788777788888888888888888777653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=81.10 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH--VTLV 480 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 480 (634)
....+..+...+...|++++|...|+++.+ |+. ..+..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566667777778888888888876653 321 35566677777888888888888887765321111 1344
Q ss_pred HHHHHhccc--------CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 481 GVLTACSHV--------GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLL 551 (634)
Q Consensus 481 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 551 (634)
.+..++... |++++|.+.++.+... .|+. .....+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 444444443 5677777777777653 3332 12211111100 00000 01122566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..+...|++++|+..++++++..|++ +.++..++.++.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999987764 478999999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=92.05 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV 480 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 480 (634)
+...|-..|.-....++.+.|.++.++... .-...|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 344566666666777777777777776652 122367777777777777777777777777642 1244566
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKT 556 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 556 (634)
.|...|.+.+..++|.++++.|.++++ .....|..+++.+.+..+-++|.+++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 777777777788888888888877655 55666777777777777777777777776 2222 34455555666667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRK 611 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 611 (634)
.||.+++..+|+..+...|.-...|+.+++.-.++|+.+.+..+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7888888888888888788777778888877778888888888888777776653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-05 Score=75.06 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=116.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C---Ch--hhHHHHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P---DV--VSWSSLIV 449 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~ 449 (634)
....+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+ | +. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 4445556677788888888888888876644 566677778888888888888888887653 1 21 23456777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHhcccCCHHHHHHH--HHHHHHHhCCCCChhHH--HHHHHH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGV-RPNHVTL-V--GVLTACSHVGLVEEGLQL--YRIMQNEYGIIPTRERR--SCVVDL 521 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~~~~~~~~~--~~l~~~ 521 (634)
.+...|++++|..++++...... .+..... . .++..+...|....+.+. +...... ........+ .....+
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHH
Confidence 78888999999988888764432 1122111 1 223333334433333222 1111111 111111112 245677
Q ss_pred HHhcCChHHHHHHHHhC---CCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 522 LARAGRVHEAEDFINQM---AFD----D----DIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~---~~~----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
+...|+.++|.+.++.+ ... . ..........++...|++++|.+.+..++..
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999998887 111 1 1122233334467889999999999987753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-05 Score=76.99 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=127.3
Q ss_pred CChHHHHHHHHHhhhcCCCCCC-cccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHH
Q 036704 58 NLYNEALVAFDFLQNNTNFRIR-PSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 58 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
++...|+..|=+..+. .++ ...|..|...|...-+...|.+.|+...+.+ +.+..........|++..+++.|..
T Consensus 472 K~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 3466666666555543 222 3478888888888888999999999988876 5677788889999999999999998
Q ss_pred HhccCCCCC-----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 137 VFDEMPQRN-----VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 137 ~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
+.-...+.+ ...|...--.|...++..++..-|+...+.. +-|...|..+..+|.+.|+...|.+.|.......
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 854433321 1123333344667888888888888877653 3566788889999999999999999998877643
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhHHHHHHhccC
Q 036704 212 HGSHL-ISQNALIAMYTKFDRILDAWNVFSSIA 243 (634)
Q Consensus 212 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 243 (634)
|+. ...--.....+..|.+.+|...+..+.
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 332 222233444667888888888877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-05 Score=68.47 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNH---VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 526 (634)
....+++.++++..+...+....... ..+..+-.++...+++.+|++...++. .+.|+ +.++.--.++|.-..
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhH
Confidence 45667888999998888877433222 334556667778899999999999988 56675 888888899999999
Q ss_pred ChHHHHHHHHhC-CCCC
Q 036704 527 RVHEAEDFINQM-AFDD 542 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~ 542 (634)
+++.|+.-|+.. ...+
T Consensus 356 ~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 999999999988 4444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-07 Score=75.39 Aligned_cols=89 Identities=7% Similarity=-0.097 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
+...+...|++++|...|+.. ...| +...+..++.++...|++++|+..|+++++.+|.++.++..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344444555555555555544 2222 34455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 036704 596 EVARLMGSMKE 606 (634)
Q Consensus 596 ~A~~~~~~~~~ 606 (634)
+|...+++..+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00037 Score=67.44 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=126.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
.+.....+.+++..-..--..+|...|+...+..-+..|..+|.++.+.+..+ ++.++++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666666666654333334577788888888888888999999988877766 77788888887765 67788888888
Q ss_pred cCCC--CChhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC--
Q 036704 435 FMED--PDVVSW-SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-- 507 (634)
Q Consensus 435 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 507 (634)
.-.+ +|...| ...+.-+...++-..+..+|++....++.|+ ...|..++..-..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6543 444433 4556667777888888889998888866665 46788888888888888888888887776543
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 508 IIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
..+....-..+++.|.-.+.+..-..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3333344445666666555544444433333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=71.76 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=100.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
..++++..+. .|+ .+......+...|++++|...|+.+... -+.+...+..+..++.+.|++++|...|++. .
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455666654 344 3555677788999999999999998842 2336778889999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 540 FDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 540 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
..| +...+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 78899999999999999999999999999999999999988876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0011 Score=68.33 Aligned_cols=543 Identities=13% Similarity=0.060 Sum_probs=277.7
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+++..|.+..+++.++.|..-.+.++.+ +.+.|+.++|..+++..... ...|..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 47788999999999988888766577777 67899999999988887754 223677888888899999999999999
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChH----HHHHHhccCCCCCccchHHHHHHHHhC-CC---------hhHHHHH
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLE----DARMVFDEMPQRNVVSWTAMIAGCSQN-GQ---------ENAAIEL 168 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~---------~~~a~~~ 168 (634)
|+..... .|+......+..+|.|.+++. .|.+++...++.--..|+. ++...+. .. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 9998866 466778888888898887765 4667777666544444543 3333322 11 2235556
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHhhcCCCchhHhHHHHH-HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCC
Q 036704 169 YVQMLQSGLMP-DQFTFGSIIRACSGLCCVGLGRQLHAH-VIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKD 246 (634)
Q Consensus 169 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 246 (634)
++.+.+.+-+. +..-...-+..+...|++++|..++.. ..+.-...+...-+.-+..+...+++.+-.++-.++..++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665543111 112122222334477888999888843 3333344445555666777888888888777766665544
Q ss_pred cchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH---hcCC
Q 036704 247 ITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCA---CTSP 323 (634)
Q Consensus 247 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~ 323 (634)
..-|...++.+ .++++..-.++... .+...+..+...+...+...... ...|.+-+.+ +-..
T Consensus 257 ~Ddy~~~~~sv------~klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 257 NDDYKIYTDSV------FKLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLI 321 (932)
T ss_pred CcchHHHHHHH------HHHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhccc
Confidence 32222222210 01111110011110 01111222222222222211100 0111111111 1223
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH-HhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc-cHHHHHHHHHHH
Q 036704 324 LSLYQGMQIHSYIIKKGFYSNVPV-CNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA-SLEMGTQLHCYI 401 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~ 401 (634)
|+.+++.-.+- .+.|..|-... .+..+. ..+......++..+.... +.....+++..-
T Consensus 322 gd~ee~~~~y~--~kfg~kpcc~~Dl~~yl~------------------~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 322 GDSEEMLSYYF--KKFGDKPCCAIDLNHYLG------------------HLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred CChHHHHHHHH--HHhCCCcHhHhhHHHhhc------------------cCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44443332211 11111111000 000000 111111122222222111 111111111110
Q ss_pred H-------HhC--CCCchhHHH----HHHHHHhhcCChHHHHHHHhcCCC----CC----hhhHHHHHHHHHhcCChH--
Q 036704 402 M-------KTG--LALDVFVMN----GLMDMYVKCGSLGSARELFNFMED----PD----VVSWSSLIVGYAQFGCGE-- 458 (634)
Q Consensus 402 ~-------~~~--~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~-- 458 (634)
. -.| ...+..... .++..|++. ..+=..+.. +. ..+-+.|+..+.+.++..
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 0 001 111111111 111112111 000000100 11 114567788888888766
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 459 -EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 459 -~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+|+-+++.-.... +-|..+-..+|+.|+-.|-...|.++|+.+.-+ .+..|..-+. +...+...|++.-+...+..
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHH
Confidence 3444555544442 335666778889999999999999999988766 6776655443 34556677888888888876
Q ss_pred C-CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 538 M-AFD-D-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP----TNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 538 ~-~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
. .+- . -..+-..+..+| +.|.+.+..++..--..+.- .-..+-+.+...++..++.++-...++.|. ++
T Consensus 533 ~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~ 608 (932)
T KOG2053|consen 533 HLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LP 608 (932)
T ss_pred HHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cC
Confidence 6 111 1 112333344444 66777766655432222211 122334455666777788877777776665 33
Q ss_pred C-CCCccEEEe
Q 036704 611 K-VPGQSWIEI 620 (634)
Q Consensus 611 ~-~~~~~~~~~ 620 (634)
+ +..+.|..+
T Consensus 609 ~~e~~I~w~~L 619 (932)
T KOG2053|consen 609 PSEDRIQWVSL 619 (932)
T ss_pred cchhhcccccc
Confidence 2 223466554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-05 Score=74.97 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=156.6
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCh-
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLIVGYAQFGCG- 457 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 457 (634)
..+...+..++|.....++++..+. +..+|+.-..++...| ++++++..++.+.+ .+...|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 3444566788888888888877654 4445555555666666 57899999888764 3444666555555556653
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CCh----H
Q 036704 458 -EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRV----H 529 (634)
Q Consensus 458 -~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 529 (634)
++++.+++++.+... -|..+|..-..++...|+++++++.++++.+. . .-+...|+.....+.+. |.. +
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 678888989888752 36788888888888889999999999999864 2 33455565555444443 222 4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTH----GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG----------- 592 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 592 (634)
+++++..++ ...| +...|+.+...+... +...+|.+.+.++....|.++.++..|+.+|++..
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 677777555 5555 677888888888773 45577999999999999999999999999998743
Q ss_pred -------ChHHHHHHHHHHH
Q 036704 593 -------KWEEVARLMGSMK 605 (634)
Q Consensus 593 -------~~~~A~~~~~~~~ 605 (634)
..++|.++++.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 3467888888874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-06 Score=86.90 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=167.5
Q ss_pred CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHH
Q 036704 371 TKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLI 448 (634)
Q Consensus 371 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~ 448 (634)
.+|-...-..+...+...|-...|..++++. ..+.-++.+|+..|+..+|..+..+.. +|++..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 3455555566667777888888888888754 456677888888888888888776554 47777888887
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 7777766777787777654332 11122222334688899988888776432 22456677777888889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|.+.|... ...| +...|+.+..+|.+.|+-.+|...++++++-+-.+..+|.+......+.|.+++|.+.++++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999887 5556 5679999999999999999999999999998888889999988888999999999999998886
Q ss_pred CCCc
Q 036704 607 RGVR 610 (634)
Q Consensus 607 ~g~~ 610 (634)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.9e-06 Score=72.80 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
..+-..+...|+-+....+........ .-+.......+....+.|++..|...+++... .-++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 556677778888888888877755432 23455566678888899999999999999885 567788899999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|+.++|..-|.+. ...| ++...+.+...+.-.|+.+.|..++.......+.++.+-..++.+...+|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988887 4444 577888888889999999999999999988888899999999999999999999988854
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-05 Score=69.92 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=115.3
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG 490 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 490 (634)
..+-..+...|+-+....+...... .+......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 5556667777777777777776542 334455557888888889999999888888764 667888888888888999
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA-FDD-DIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+.+.|..-|.+..+-. .-+....+.+.-.|.-.|+++.|..++.... ..+ |..+-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999988888887532 2245566777778888889999988888872 222 67788888888888888888888765
Q ss_pred H
Q 036704 569 N 569 (634)
Q Consensus 569 ~ 569 (634)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=55.48 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=24.8
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHhccC
Q 036704 211 EHGSHLISQNALIAMYTKFDRILDAWNVFSSIA 243 (634)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 243 (634)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-05 Score=67.10 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=141.5
Q ss_pred cccHHHHHHHHHHHH---HhC-CCCchh-HHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHH-HHHHHhcCChHH
Q 036704 388 MASLEMGTQLHCYIM---KTG-LALDVF-VMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSL-IVGYAQFGCGEE 459 (634)
Q Consensus 388 ~~~~~~a~~~~~~~~---~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~ 459 (634)
..+.++..+++.++. +.| ..++.. .|..++-+....|+.+.|...++.+.+ |.+.-...| ..-+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 345666777777666 233 444443 355666677788899999988888764 333222222 122445788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 460 ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 460 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
|+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+ .+..|...|.-+.+.|...|+++.|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999886 44567776666666677888899998888886 57789999999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 539 AFDD-DIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 539 ~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
-..| ++..+..+...+.-.| +...|.+.|.+++++.|.+...+.-+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 5556 5666677777754433 67889999999999999777666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00028 Score=79.43 Aligned_cols=299 Identities=10% Similarity=0.019 Sum_probs=142.2
Q ss_pred HhhcCCCchhHhHHHHHHHHhcCC------CC--hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccc
Q 036704 190 ACSGLCCVGLGRQLHAHVIKSEHG------SH--LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLD 261 (634)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 261 (634)
.+...|+++++...+......--. +. ......+...+...|++++|...+++..+..
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------- 482 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--------------- 482 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------------
Confidence 334566777777766665443111 11 1122223334556677777777666543210
Q ss_pred hHHHHHhcCCCCC----hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC---CC--CHhHHHHHHHHhcCCCChHHHHHH
Q 036704 262 FARTVFNEMESPN----LASWNTIIAGVASCSNANEAMSLFSEMGDREL---IP--DGLTVRSLLCACTSPLSLYQGMQI 332 (634)
Q Consensus 262 ~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~ 332 (634)
+..+ ....+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...
T Consensus 483 ---------~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 483 ---------PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111 12345566677788999999888887754211 11 122344455566778888888887
Q ss_pred HHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCC--C-CHhHHHHHHHHhhccccHHHHHHHHHHHHHhC--CC
Q 036704 333 HSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTK--P-DHITFNDVMGACAAMASLEMGTQLHCYIMKTG--LA 407 (634)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 407 (634)
+....... +. .+.. + ....+..+...+...|++++|...+.+..... ..
T Consensus 554 ~~~al~~~-----------------------~~---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 554 QEKAFQLI-----------------------EE---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHH-----------------------HH---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 76654421 00 1100 1 11223333444555566666666666654321 11
Q ss_pred C--chhHHHHHHHHHhhcCChHHHHHHHhcCCC----CC-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 408 L--DVFVMNGLMDMYVKCGSLGSARELFNFMED----PD-VVSW-----SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 408 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
+ ....+..+...+...|+.+.|.+.++.... .. ...+ ...+..+...|+.+.|..++...........
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 1 122233344455566666666665554421 10 0001 0011223345566666666555433211111
Q ss_pred H---HHHHHHHHHhcccCCHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 476 H---VTLVGVLTACSHVGLVEEGLQLYRIMQNE---YGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 476 ~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
. ..+..+..++...|++++|...+++.... .|..++ ..+...+..++.+.|+.++|.+.+.+.
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 11233444555566666666666655432 121111 223344455555666666666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=82.03 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
...+..|.....+.|.+++|..+++.+. .+.|+ ......++..+.+.+++++|+..+++. ...| +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444445555555555555555555544 22333 223334444555555555555555544 3333 2334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++...|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555455555555555555555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-06 Score=81.79 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=159.7
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT 484 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 484 (634)
+.+|-...-..+...+.+.|-...|..+++++ ..|...+.+|+..|+..+|..+..+..++ +|++..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 44555566677888999999999999999985 46777888999999999999999888874 789999999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 562 (634)
......-+++|.++.+....+ .-..+.....+.++++++.+.++.- ...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876542 1112223334579999999999876 5555 57789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.+.|.......|++..+|+++..+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999877
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-05 Score=69.21 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=117.0
Q ss_pred HHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 417 MDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
+..|...|+++.+....+.+..|.. .+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567778887776555443332210 1223566788888888887764 446888999999999999999999
Q ss_pred HHHHHHHHHhCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 497 QLYRIMQNEYGIIP-TRERRSCVVDLL-ARAGR--VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 497 ~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
..|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999885 344 677777788764 67777 59999999998 5555 6788899999999999999999999999
Q ss_pred HhcCCCCchhHH
Q 036704 571 LKIDPTNSAALV 582 (634)
Q Consensus 571 ~~~~p~~~~~~~ 582 (634)
++..|.+..-..
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.7e-05 Score=80.29 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=180.7
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHhhcCChHHHHHHHhcCCC-CC-hhhHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKT-GLAL---DVFVMNGLMDMYVKCGSLGSARELFNFMED-PD-VVSWSS 446 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 446 (634)
-+...|-..|.-....++.++|..+.+++... +++- -...|.++++.-..-|.-+...++|+++.+ .| ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34457888888899999999999999998842 3322 234677888877778888999999999876 44 346889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
|...|.+.+..++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.++.+...-..........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999987 3456788999999999999999999999999864222224566677778888999
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCch-hHHHHHHHHHhcCChHHHHHHH
Q 036704 527 RVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI--DPTNSA-ALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 527 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~-~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+.+++..+|+.. ..+.-...|+..+..-.++|+.+.+..+|++++.+ .|.... +|.-+...-.+.|+-+.++.+-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999988 33346789999999999999999999999999984 454444 4444444334457766555554
Q ss_pred HHHH
Q 036704 602 GSMK 605 (634)
Q Consensus 602 ~~~~ 605 (634)
.++.
T Consensus 1695 arA~ 1698 (1710)
T KOG1070|consen 1695 ARAK 1698 (1710)
T ss_pred HHHH
Confidence 4443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=54.13 Aligned_cols=32 Identities=44% Similarity=0.600 Sum_probs=18.6
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=70.05 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=82.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGR 527 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 527 (634)
.+...|+.+.|...++.+... .|+ +.........+...++.++|.+.++++.. ..|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344556666777776666655 444 33333444566666777777777666663 3444 3344456666667777
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 528 VHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 528 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+.+|+.++++. ..+.|+..|..|.++|...|+..++... .+..|.-.|++++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 77777766666 3333566677777777776666665554 3344555666666666666666
Q ss_pred hCC
Q 036704 606 ERG 608 (634)
Q Consensus 606 ~~g 608 (634)
++.
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=73.13 Aligned_cols=184 Identities=11% Similarity=0.009 Sum_probs=130.3
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----h
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----S 443 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 443 (634)
......+-.+...+...|+++.|...++++.+..... ....+..+..++...|++++|...++.+.+ |+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4456678888889999999999999999998765431 124667788899999999999999999863 3322 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 444 WSSLIVGYAQF--------GCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 444 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+..+..++... |+.++|.+.++++.+. .|+. .....+.... . ...... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---------~~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---------LRNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---------HHHHHH---------HH
Confidence 55555666554 7789999999999876 4543 2222221110 0 000010 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...+...|.+.|++++|...+++. +..| ....+..++.++...|++++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 124667788999999999999987 2223 3568889999999999999999998888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=78.14 Aligned_cols=221 Identities=11% Similarity=0.059 Sum_probs=157.2
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C----------Ch
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P----------DV 441 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----------~~ 441 (634)
+...|..|.......++-..|+..+.+..+..+. +......|.-.|...|.-.+|.+.++.-.. | +.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 3446666666666677777777777777776654 667777777788888888888887765321 0 00
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRR-MRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVV 519 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 519 (634)
.+-.. ..+..........++|-+ ....+..+|+.....|--.|--.|++++|...|+.+.. ++| |..+||.|.
T Consensus 397 ~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 397 DFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLG 471 (579)
T ss_pred cccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhh
Confidence 00000 111112223344455444 44555446777777777778889999999999999984 566 678999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-----chhHHHHHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT-----N-----SAALVLLCNI 587 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~ 587 (634)
..++...+.++|++.|.+. ..+|. +.++..|.-.|...|.+++|...|-.++.+.+. . ..+|..|-.+
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a 551 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA 551 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence 9999999999999999998 78885 568888999999999999999999998875544 1 2477777777
Q ss_pred HHhcCChHHHHHH
Q 036704 588 YASSGKWEEVARL 600 (634)
Q Consensus 588 ~~~~g~~~~A~~~ 600 (634)
+.-.++.+-+.+.
T Consensus 552 ls~~~~~D~l~~a 564 (579)
T KOG1125|consen 552 LSAMNRSDLLQEA 564 (579)
T ss_pred HHHcCCchHHHHh
Confidence 7777776655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=69.02 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
...-.+...+...|++++|.++|+-+ ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445666777899999999999988 4555 677899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 036704 591 SGKWEEVARLMGSMKERG 608 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~g 608 (634)
.|+.+.|.+.|+......
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999887643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-06 Score=68.87 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445566666777777777777766 3233 556666777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 036704 591 SGKWEEVARLMGSMKER 607 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~ 607 (634)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-05 Score=73.14 Aligned_cols=177 Identities=16% Similarity=0.101 Sum_probs=130.4
Q ss_pred ChHHHHHHHhcCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 425 SLGSARELFNFMED------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 425 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
++.++....+.++. |+...+...+.+.........+..++.+-.+. .-...-|..- -.+...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHH
Confidence 45555655566652 55555666665544443333333333322221 1122333333 345577999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+|+..+++....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9999863 4446667778889999999999999999998 66676 677888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..|..|+.+|..+|+..+|....-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999988776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-05 Score=66.01 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
.|..++-+....|+.+.|...++.+.+.- |.+ ..-..-..-+...|++++|.++++.+..+ -+.|..++..-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45666777788899999999999998873 543 22222233355679999999999999974 34467777777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---ChHH
Q 036704 522 LARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG---KWEE 596 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 596 (634)
.-..|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++-..|.++..+..++..+.-+| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888999888887 677799999999999999999999999999999999999999999999977665 6778
Q ss_pred HHHHHHHHHhCCC
Q 036704 597 VARLMGSMKERGV 609 (634)
Q Consensus 597 A~~~~~~~~~~g~ 609 (634)
|.+++.+..+-+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8999998877543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00022 Score=62.65 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH 476 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 476 (634)
+.+.+.......+......-...|++.|++++|++..+....-+.... =+..+.+..+.+.|.+.+++|.+-. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 344444444443333333445567788888888888877433333222 2344556667788888888887642 56
Q ss_pred HHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 036704 477 VTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSL 550 (634)
Q Consensus 477 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 550 (634)
.|.+-|..++.+ .+....|.-+|+++.. ...|+..+.+-...++...|++++|..+++.. ....++.++-.+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666665543 3457777778887774 46677777777777777777777777777776 434466666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 036704 551 LASCKTHGNV-DVGKRAAENILKIDPTNS 578 (634)
Q Consensus 551 ~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 578 (634)
+..-...|.. +...+.+.......|.++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6666666644 444556666666677655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-05 Score=81.07 Aligned_cols=196 Identities=12% Similarity=0.122 Sum_probs=144.6
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCC---------
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPD--------- 440 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--------- 440 (634)
.+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+. ..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 34567888899999999999999999977765543 334444444467777777766655 222 112
Q ss_pred ----------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 441 ----------VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 441 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
...+..+..+|-+.|+.+++..+|+++.+.. +-|+...+.+...|... ++++|.+++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 2456678888889999999999999999986 44688899999999988 999999998888753
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---------------------DIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---------------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+...+++.++.++|+++ ...| -..++..+-..|...+++++++.+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 33444555555555555 2122 23344445567778889999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHH
Q 036704 569 NILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 569 ~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999998876
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=64.08 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=118.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH----H
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL----A 523 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 523 (634)
...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.. +. +..+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhc
Confidence 445888999999999887621 223333334456677889999999999984 33 344555555554 4
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH-HHH
Q 036704 524 RAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV-ARL 600 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~ 600 (634)
-.+.+.+|.-+|+++ +..|++.+.+..+.++...|++++|..+++.++..+++++.++.+++.+-...|+-.++ .+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 466799999999999 47889999999999999999999999999999999999999999998887888876655 445
Q ss_pred HHHHHhCCCcCCCCccEE
Q 036704 601 MGSMKERGVRKVPGQSWI 618 (634)
Q Consensus 601 ~~~~~~~g~~~~~~~~~~ 618 (634)
+..++. ..|...|+
T Consensus 265 l~QLk~----~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKL----SHPEHPFV 278 (299)
T ss_pred HHHHHh----cCCcchHH
Confidence 555543 34454554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=69.77 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=137.3
Q ss_pred HhhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC--HH
Q 036704 420 YVKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFG-CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL--VE 493 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~ 493 (634)
+...++.++|+.+.+.+.+ | +...|+.....+...| ++++++..++++.+...+ +..+|+.-...+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 4445678888888887764 3 3345665556666666 579999999999987532 45566655444555555 36
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCH----HHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---GNV----DVGK 564 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~----~~a~ 564 (634)
++..+++++.+. -+-+...|+....++.+.|+++++++.++++ ...| +...|+....++.+. |.. ++.+
T Consensus 126 ~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 778888888853 3346788888888888999999999999998 4444 677888777776554 223 5788
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHhCCC
Q 036704 565 RAAENILKIDPTNSAALVLLCNIYASS----GKWEEVARLMGSMKERGV 609 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~ 609 (634)
....+++..+|++.++|+.+..++... ++..+|.+...+..+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 888899999999999999999999883 456778888888766443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=76.38 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=94.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
...++..+...++++.|..+++++.+. .|+. ...++..+...++-.+|.+++.+. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445556666677788888888887754 3443 334667777777777888887776 3333 66677777788889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++++.|+.+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998887664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-05 Score=63.47 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=91.2
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036704 463 LFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF 540 (634)
Q Consensus 463 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 540 (634)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 34 3455666777788899999999999998753 2446777888889999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 541 DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 541 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
.| +...+..+...+...|++++|...++++++..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 44 5778888889999999999999999999999998776443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.8e-05 Score=77.85 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=110.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHH
Q 036704 440 DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSC 517 (634)
Q Consensus 440 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 517 (634)
+...+..|.....+.|..++|..+++...+. .|+ ......++..+.+.+++++|...+++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 4667888888889999999999999999886 565 56667778888899999999999998884 344 4566677
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+..++.+.|++++|.++|+++ ...| +..++..+..++...|+.++|...|+++++..-+-...|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888889999999999999998 3344 47788888999999999999999999998855444444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-05 Score=63.47 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=74.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI----VVWKSLLA 552 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~ 552 (634)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|.+.|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 35666667666777765422221 1122233556666777777777777776 222332 24445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.+...|++++|+..++.. ...+-.+..+...+.+|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777888777777553 233335566777788888888888888777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-06 Score=63.03 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.|++++|+.+++++ ...| +...+..++.+|.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888887777 2222 455666678888888888888888888 777777777777778888888999998888
Q ss_pred HHH
Q 036704 601 MGS 603 (634)
Q Consensus 601 ~~~ 603 (634)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0085 Score=57.19 Aligned_cols=325 Identities=13% Similarity=0.120 Sum_probs=190.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCC----CCHhHHHHHHHHhcCC--------CC-------hHHHHHHHH
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELI----PDGLTVRSLLCACTSP--------LS-------LYQGMQIHS 334 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~--------g~-------~~~a~~~~~ 334 (634)
|...-+..+..+...|++.++..++++|...=++ .+..+|+.++-.+.++ .. ++.+.-..+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 4444566788899999999999999988765433 6778888754444331 11 122222222
Q ss_pred HHHH------hCCCCChhHHhHHHhc-------CHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHH
Q 036704 335 YIIK------KGFYSNVPVCNAILQH-------QAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 335 ~~~~------~~~~~~~~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
++.. ..+.|.......++++ ...--..+++.-...-+.|+.. ....+...+.. +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 2222 1344555555555533 2233344444445555667643 34444444444 56666666555
Q ss_pred HHHhCCCC----chhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhh-------HHHHHHHHH----hcCChHHHHHH
Q 036704 401 IMKTGLAL----DVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVS-------WSSLIVGYA----QFGCGEEALKL 463 (634)
Q Consensus 401 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~a~~~ 463 (634)
+....+.+ -..++..++....+.++...|.+.+.-+. +|+... -..+.+..+ ..-+..+=+.+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55433221 23456777777888899888888887655 344331 112222233 11223344566
Q ss_pred HHHHHhCCCCCCHHHHHHH---HHHhcccCC-HHHHHHHHHHHHHHhCCCC-ChhHHHHHH----HHHHh---cCChH--
Q 036704 464 FRRMRSSGVRPNHVTLVGV---LTACSHVGL-VEEGLQLYRIMQNEYGIIP-TRERRSCVV----DLLAR---AGRVH-- 529 (634)
Q Consensus 464 ~~~m~~~~~~p~~~~~~~l---~~~~~~~g~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~---~g~~~-- 529 (634)
|+.....++.- ......+ +.-+.+.|. -++|..+++.+.+ +.+ |...-|.+. ..|.. ...+.
T Consensus 365 we~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 365 WEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRL 440 (549)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66666654321 2222222 344556665 8889999998874 344 444333322 12211 11122
Q ss_pred -HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 530 -EAEDFINQMAFDD----DIVVWKSLLAS--CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 530 -~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.-..++++.++.| +...-+.+..+ +..+|++.++...-.-+.+..| ++.+|..++-.+....+++||.++++
T Consensus 441 lkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2233444556666 34466667666 5678999999999999999999 99999999999999999999999998
Q ss_pred HHH
Q 036704 603 SMK 605 (634)
Q Consensus 603 ~~~ 605 (634)
.+.
T Consensus 520 ~LP 522 (549)
T PF07079_consen 520 KLP 522 (549)
T ss_pred hCC
Confidence 763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00092 Score=71.16 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=126.0
Q ss_pred cccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhC
Q 036704 80 PSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQN 159 (634)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 159 (634)
...+..|+..+...+++++|.++.+...+.. |-....|-.+...+...++.+.+..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456666666667777777777776555542 22333333333345555554444433 233334444
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 036704 160 GQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVF 239 (634)
Q Consensus 160 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 239 (634)
.++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+.. ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44544444444555432 233455666666667777777777777777666 44566777777777777 777777776
Q ss_pred hccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhH-HHHHHH
Q 036704 240 SSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLT-VRSLLC 318 (634)
Q Consensus 240 ~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~ 318 (634)
.+. +..+...+++.++.++|.++... .|+... +..++.
T Consensus 173 ~KA---------------------------------------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ 211 (906)
T PRK14720 173 KKA---------------------------------------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER 211 (906)
T ss_pred HHH---------------------------------------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH
Confidence 542 33456666777777777777664 232221 111111
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 319 ACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH-QAGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 319 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
.....-....+..++ ..+|+..-.. ++++++.+++.+.+.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~-----------~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLL-----------EDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHH-----------HHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111110011111110 1112222222 7888888888888765 334555666666555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5e-06 Score=49.82 Aligned_cols=35 Identities=34% Similarity=0.724 Sum_probs=31.4
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ 181 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (634)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=57.47 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG-KWEEVARLMGSMKE 606 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 606 (634)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998876
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-05 Score=58.80 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888999999988887 4344 44677788888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 036704 593 KWEEVARLMGSMKER 607 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~ 607 (634)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999887653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00021 Score=59.71 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh--hHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR--ERRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 518 (634)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555555 37788888888888887632211 233444567778889999999999988865 322221 233456
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
...+...|++++|+..++... ....+..+...+..|...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888999999999988763 23356677778888999999999999988753
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-06 Score=49.42 Aligned_cols=35 Identities=37% Similarity=0.658 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG 310 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 310 (634)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.07 E-value=8e-05 Score=60.03 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNI 587 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 587 (634)
-.++..+.+.|++++|.+.++.+ ...|+ ...+..++.++...|+++.|...++.+....|.+ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444555555555555555555 11221 2344445555666666666666666666655543 3455556666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 036704 588 YASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~ 607 (634)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=8e-06 Score=48.48 Aligned_cols=33 Identities=27% Similarity=0.716 Sum_probs=28.4
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMP 179 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (634)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.1e-06 Score=48.23 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIP 308 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 308 (634)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=55.41 Aligned_cols=58 Identities=29% Similarity=0.341 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++..+...|++++|+..|+++++..|.++.++..++.++.++|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999999999999999999999988764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=58.15 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSL 550 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 550 (634)
.++..+...+...|++++|.+.++.+....+-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566667777888888888877775421111 1334556777788888888888888876 22232 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
..++...|+.++|...++++++..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888899999999999999888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=69.74 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+....-++++..| .-+.+.+++.+|+..|.+++ .+.| |...|..=..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555566554 34678899999999999998 4565 677788888999999999999998887
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 538 M-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 538 ~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
. .+.|. ..+|..|..+|...|++++|++.|+++++++|++......|-.+--+.+...
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7 77774 6699999999999999999999999999999999988888876655555444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0003 Score=68.18 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG 490 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 490 (634)
.....++..+...++++.|..+++++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566667777888888888888887666667778888888888888888888888652 235666666677788889
Q ss_pred CHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036704 491 LVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQMAF 540 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (634)
+++.|.++.+++.. ..| +..+|..|..+|...|++++|+-.++.++.
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999988884 455 566888899999999999999988888843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-05 Score=66.76 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=81.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 526 (634)
.+-+.+.+++.+|+..|.+.++.. +-|++.|..=..+|.+.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345778899999999999999873 2357778888899999999999998888777 45664 568999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036704 527 RVHEAEDFINQM-AFDDDIVVWKSLL 551 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~~~~~~~~l~ 551 (634)
++++|++.|++. .+.|+..+|..=+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999988 8888766554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=71.09 Aligned_cols=108 Identities=14% Similarity=0.012 Sum_probs=89.7
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN 559 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 559 (634)
-...+...|++++|+..|+++... .+.+...+..+..+|.+.|++++|+..++++ ...| +...+..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345666789999999999999863 2335677888889999999999999999998 5555 67788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 560 VDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+++|+..++++++++|.++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=62.38 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
...+..+...+...|++++|...+++. ...|+ ...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556667777778888888877776 22222 3577888888889999999999999999999998888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhCC
Q 036704 587 IYASSGK--------------WEEVARLMGSMKERG 608 (634)
Q Consensus 587 ~~~~~g~--------------~~~A~~~~~~~~~~g 608 (634)
++...|+ +++|.+++++..+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888776 466777776666533
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=64.16 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH-G--NVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+-|...|-.|...|...|+...|...|.+. ...| ++..+..+..++... | +..++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999988 4444 667777777775433 2 4679999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcCCCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERGVRKVPG 614 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 614 (634)
|+..+..+|++.+|...++.|++.....+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999877555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.041 Score=53.96 Aligned_cols=182 Identities=10% Similarity=0.135 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC---ChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG---SLGSARELFNFMED----PDVVSWSSLIVGYAQFGCGEEALKL 463 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 463 (634)
.+++..+++..++.-..-+..+|..+.+.--..- ..+.....++++.. .-..+|..+++.-.+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455666666554433334444444443211111 24555555555542 2234788888888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---C
Q 036704 464 FRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---A 539 (634)
Q Consensus 464 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 539 (634)
|.++.+.+..+ ....+.+++..+|. ++.+.|.++|+.-.+++| -+.......++-+...++-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999998777 67777888887765 889999999998887543 34455567888889999999999999998 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 540 FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 540 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..| ....|..++.--...|+...+.++-++.....|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 344 356999999999999999999999998887666
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.022 Score=57.32 Aligned_cols=191 Identities=10% Similarity=-0.010 Sum_probs=91.0
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHH------HHHhhccCChhH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADL------ISACSSLRSLQL 98 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~ 98 (634)
.-.+++|.+..+.-|+| ..|. .+...-...-.++-|...|-+...-.|++.-...-... ...-+--|++++
T Consensus 676 ~vgledA~qfiEdnPHp--rLWr-llAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 676 AVGLEDAIQFIEDNPHP--RLWR-LLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HhchHHHHHHHhcCCch--HHHH-HHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 33467777766654444 6676 44444455555666666665554433332111100000 011112355666
Q ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-----CCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 99 GRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-----RNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
|.++|-+|-.++ .-+..+.+.|+|-...++++.-.. .-..+|+.+-..++....+++|.+.|..-.
T Consensus 753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666665554433 234555566666666666654321 112245555555555556666665554322
Q ss_pred HCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 036704 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSS 241 (634)
Q Consensus 174 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (634)
. . ...+.++.+...+++.+.+-. .++.+....-.+..++...|.-++|.+.+-+
T Consensus 824 ~------~---e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 824 D------T---ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred c------h---HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1 0 112223333333332222221 2344455555666677777777777665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00027 Score=60.98 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
...+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..+++++...|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777778889999999988887 33232 3578889999999999999999999999999999888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 036704 587 IYA-------SSGKWEEVARLMGSM 604 (634)
Q Consensus 587 ~~~-------~~g~~~~A~~~~~~~ 604 (634)
++. +.|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.3e-05 Score=54.23 Aligned_cols=53 Identities=25% Similarity=0.454 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
...|++++|++.++++++..|+++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888877653
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.001 Score=62.43 Aligned_cols=135 Identities=12% Similarity=0.156 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367888888888888999999999998653 3345555554444 33357788899999999975 4557778889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 521 LLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+.+..+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998 33333 348999999999999999999999999998887544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.085 Score=55.12 Aligned_cols=488 Identities=11% Similarity=0.108 Sum_probs=255.6
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHH--hhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCCh
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISA--CSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSL 131 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 131 (634)
....+++.+|+.-...+.++ .|+. .|..++.+ +.+.|+.++|..+++.....+. .|..+...+..+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 45678899999999999876 2332 33444444 4689999999999998876663 3888999999999999999
Q ss_pred HHHHHHhccCCC--CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC-Cc---------hh
Q 036704 132 EDARMVFDEMPQ--RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC-CV---------GL 199 (634)
Q Consensus 132 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---------~~ 199 (634)
++|..+++...+ |+......+..+|++.+++.+-.+.--+|-+ ..+-+...|-++++...... .. ..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999876 5544445566677787776654444444433 34445666667776554221 11 12
Q ss_pred HhHHHHHHHHhc-CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhH
Q 036704 200 GRQLHAHVIKSE-HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASW 278 (634)
Q Consensus 200 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 278 (634)
|.+.++.+.+.+ .--+..-.......+...|++++|..++..- +.+....-+...-
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~-----------------------la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAIT-----------------------LAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHH-----------------------HHHhccccchHHH
Confidence 344444444433 1111111111223344556677777666221 1111112233444
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhH
Q 036704 279 NTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGE 358 (634)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (634)
+--+..+...++|.+..++-.++...|. |. |...+.. ..++++....+.......+.. ..+.
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~s-------------v~klLe~~~~~~a~~~~s~~~-~l~~ 291 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDS-------------VFKLLELLNKEPAEAAHSLSK-SLDE 291 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHH-------------HHHHHHhcccccchhhhhhhh-hHHH
Confidence 4556667777788887777777766642 21 2222211 111222111111111111100 1222
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhh---ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 359 LFRLFSLMLASQTKPDHITFNDVMGACA---AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
..+...+..... ....|-+-+.+.. .-|+.+++...|-+ +-|-.| .|..=+..|.-.=..+.-..++..
T Consensus 292 ~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~ 363 (932)
T KOG2053|consen 292 CIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSK 363 (932)
T ss_pred HHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHH
Confidence 222222222211 1112223233332 34555554433322 233222 222223334433444555556655
Q ss_pred CCC--CChh-----h--HHHHHHHHHhcC-----ChHHHHHHHHHHH---hCCCCC------CH---------HHHHHHH
Q 036704 436 MED--PDVV-----S--WSSLIVGYAQFG-----CGEEALKLFRRMR---SSGVRP------NH---------VTLVGVL 483 (634)
Q Consensus 436 ~~~--~~~~-----~--~~~l~~~~~~~~-----~~~~a~~~~~~m~---~~~~~p------~~---------~~~~~l~ 483 (634)
... ++.. . +...+..-...| +.+....++.+.. ++|... +. -+.+.++
T Consensus 364 l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Li 443 (932)
T KOG2053|consen 364 LVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLI 443 (932)
T ss_pred hhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHH
Confidence 542 2222 0 112222222223 2344455554433 445332 21 1345677
Q ss_pred HHhcccCCHH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHhc
Q 036704 484 TACSHVGLVE---EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAF---DDDIVVWKSLLASCKTH 557 (634)
Q Consensus 484 ~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~ 557 (634)
..+.+.++.. +|+-+++..... -+.+..+--.+|..|.--|-+..|.+.|+.+.+ +-|..-+ .+...+...
T Consensus 444 d~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~ 520 (932)
T KOG2053|consen 444 DLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETS 520 (932)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhc
Confidence 7888888765 455555555532 223445555788999999999999999999943 3333322 234446678
Q ss_pred CCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHH
Q 036704 558 GNVDVGKRAAENILKIDPTNSA-ALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 600 (634)
|++..+...+....+..-++.. +-..++.+ .+.|.+.+-.+.
T Consensus 521 g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em 563 (932)
T KOG2053|consen 521 GRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEM 563 (932)
T ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHH
Confidence 8999999999988875443222 22233333 345666655544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=52.61 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
...|.+.+++++|.+++++++..+|+++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998887543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0063 Score=50.60 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWK 548 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~ 548 (634)
.|+...-..|..+....|+..+|...|++.... -+-.|..+.-.+..+....+++.+|...++++ ...| ++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 567777777888888899999999999988763 34456777778888888889999999888887 2223 344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.+.+.+...|.+..|+..|+.++.-.|. +..-...+..+.++|+..+|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7788888999999999999999887774 444555566788888777765444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.3e-05 Score=43.70 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=50.98 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999998 5556 577899999999999999999999999999999875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00085 Score=65.42 Aligned_cols=101 Identities=9% Similarity=-0.082 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhc
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARA 525 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 525 (634)
....+...|++++|+..|+++++.. +-+...|..+..++...|++++|...++++... .| +...+..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999874 235777888888999999999999999999853 44 566788888999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036704 526 GRVHEAEDFINQM-AFDDDIVVWKSLL 551 (634)
Q Consensus 526 g~~~~A~~~~~~~-~~~~~~~~~~~l~ 551 (634)
|++++|+..|++. ...|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566544433333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.7e-05 Score=43.55 Aligned_cols=31 Identities=29% Similarity=0.622 Sum_probs=25.1
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGL 177 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (634)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00059 Score=52.10 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=54.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444455556666666666665532 1222244555556666666666666666655 2222 3346666666777777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 036704 559 NVDVGKRAAENILKIDP 575 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p 575 (634)
+++.|...++++.+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777766655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=54.14 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|.+++++....|. ......++.+|...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 455555555555554311111233333355555555555555555555322222 2333344555555666666666555
Q ss_pred H
Q 036704 569 N 569 (634)
Q Consensus 569 ~ 569 (634)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=60.95 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=118.8
Q ss_pred CChhhHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 439 PDVVSWSSL-IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT--ACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 439 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
|...+|..| ..++.-.|+.++|...--...+.. + ...+..+++ ++...++.+.|...|++.. ...|+....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~s 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKS 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhH
Confidence 333445444 345667788888888776666553 1 122333333 3345678888888888877 456654332
Q ss_pred HHH-------------HHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 516 SCV-------------VDLLARAGRVHEAEDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 516 ~~l-------------~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
... .+-..+.|++..|.+.|.+. .+.| +...|.....+..+.|+.++|+.--+.+++++|.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 221 23446789999999999987 4444 4556777778888999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
-..++..-+.++...++|++|.+-+++..+.--
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999998876433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.06 Score=51.52 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|..+++.-.+....+.|..+|-++.+.| +.++...+++++..++. |++..|..+|+.-... ++.+.......+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 457778888888888999999999999998 66778888888886654 8899999999987653 3333344456777
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 521 LLARAGRVHEAEDFINQM--AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+.+.++-+.|..+|+.. .+..+ ...|..++.--...|+...+..+-+++.+..|...
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 788899999999999966 33333 56889999988899999999999999999888753
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=65.91 Aligned_cols=139 Identities=10% Similarity=0.003 Sum_probs=78.7
Q ss_pred CChhhHHHHHHHHH--hc---CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhccc--------CCHHHHHHHHHHHHH
Q 036704 439 PDVVSWSSLIVGYA--QF---GCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHV--------GLVEEGLQLYRIMQN 504 (634)
Q Consensus 439 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 504 (634)
.+...|...+++.. .. ++...|..+|++..+. .|+ ...+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44455555555532 22 2356777778887776 455 33343333322211 112233333333222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
......+...+..+.-.....|++++|...+++. ...|+...|..++..+...|+.++|.+.++++..++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1012234455666655555667777777777777 55567677777777777777777777777777777777664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0027 Score=54.94 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVV 519 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 519 (634)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.... .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 445555555566666666666666554432221 234555555555666666666666655532 22 233334444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 520 DLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
.++...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 4444444444333221111 012677888888888888876 334444444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=53.03 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
--+...|++++|..+|.-+ - ...+..-|..|..++...+++++|+..|..+..++++|+......+.+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445678888888888876 2 2236667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 036704 598 ARLMGSMKE 606 (634)
Q Consensus 598 ~~~~~~~~~ 606 (634)
...|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=51.49 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=41.5
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...|++++|++.|+++ ...| +...+..++.+|.+.|++++|.++++++....|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3466777777777776 3333 5666667777777777777777777777777777655555443
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0052 Score=58.02 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=76.2
Q ss_pred HHHHHHHhccc-CCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCHH
Q 036704 479 LVGVLTACSHV-GLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQMA---F-----DDDIV 545 (634)
Q Consensus 479 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~~~~~ 545 (634)
+..+...|... |++++|.+.|++...-+..... ..++..+...+.+.|++++|.++|++.. . +.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455567777 8888888888887754332222 3345667788889999999999998871 1 11121
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHhc--CChHHHHHHHHHH
Q 036704 546 -VWKSLLASCKTHGNVDVGKRAAENILKIDPTN-----SAALVLLCNIYASS--GKWEEVARLMGSM 604 (634)
Q Consensus 546 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 604 (634)
.+...+-++...||...|.+.+++....+|.- ..+...|+.++-.. ..+++|..-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23344456667889999999999998887752 23445555555432 3455555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=50.86 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM---AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLCNIYA 589 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 589 (634)
+..++-..|+.++|+.+|++. +..+. ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666665 22221 235556666677777777777777777776666 5555556666677
Q ss_pred hcCChHHHHHHHHHH
Q 036704 590 SSGKWEEVARLMGSM 604 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~ 604 (634)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777665443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=49.13 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCC-CCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcC
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDREL-IPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQ 355 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (634)
+-...|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++..--..+ +.++
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~----------------------ie~k 84 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED----------------------IENK 84 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh----------------------HHHH
Confidence 344566777777999999999999999999 99999999999887654321111 1113
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
.-..+..++.|...+++|+..||+.++..+.
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 4455666666666667777777776666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.02 Score=52.41 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=100.2
Q ss_pred HHHHHhhcCChHHHHHHHhcCCC--CChhh----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-
Q 036704 416 LMDMYVKCGSLGSARELFNFMED--PDVVS----WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH- 488 (634)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 488 (634)
....+...|++++|.+.|+.+.. |+... .-.+..++.+.+++++|...+++..+....-....+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777777753 33321 133456677778888888888887776322112222222222221
Q ss_pred -c---------------CC---HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 036704 489 -V---------------GL---VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS 549 (634)
Q Consensus 489 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 549 (634)
. .| ...|...|+.+.+. |-...-..+|...+..+...--... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 12344444444432 2222223344433333311100111 14
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..-|.+.|.+..|+.-++.+++..|+. ..++..++.+|.+.|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5666889999999999999999977764 4567778889999999999999877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0031 Score=61.57 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC----CChhh
Q 036704 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT--GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED----PDVVS 443 (634)
Q Consensus 370 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 443 (634)
+.+.+...+..+++.+....+++.+..++.+.+.. ....-..+..++++.|...|..+.+..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34666777777788888888888888887777744 3333345556788888888888888888776553 78888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
++.|+..+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777776666666666555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0074 Score=61.67 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 036704 471 GVRPNHVTLVGVLTACSHV-----GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARA--------GRVHEAEDFIN 536 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 536 (634)
+.+.+...|...+++.... ++...|..+|+++.+ ..|+- ..+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456788888888775432 347789999999984 46763 3444443333322 12344455554
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 537 QM----AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 537 ~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+. ....++..+..+...+...|++++|...++++++++| +..+|..++.++...|+.++|.+.+++..+.+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 2334667888887777788999999999999999999 67899999999999999999999999987754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0085 Score=49.24 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...-.+...+...|++++|.++|+-+.. +.| +..-|-.|.-++...|++++|+..|... ...| |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3344445556678888888888888773 344 4555667888888888888888888887 3334 67788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 036704 554 CKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 889999999999888888755
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=63.77 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=87.2
Q ss_pred CCCCcchhhHHHHHHHccCChHHHHHHhccCCC-C-----CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 036704 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-R-----NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTF 184 (634)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (634)
.+.+......+++.+....+++.+..++-+... | -..+.+++|+.|.+.|..+.++.+++.=...|+-||..||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 355555666677777777777777777666553 1 2335568888888888888888888888888888888888
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 036704 185 GSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKF 229 (634)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 229 (634)
+.||..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666666555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.029 Score=56.02 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=146.0
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
+-...+.+=+..|...|.+++|..+- --|+. ..-|..+......+-+++.|.+.+..+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgVv--~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGVT--DTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----cccee--cchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 34445555566677788887776431 11222 222333333333344455555444443322
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
.+-+...-++++++.|-.|+... +...|+-.|++.+|.++|.+ .|.. +..+.+|.....++.|.++
T Consensus 615 --~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~ 680 (1081)
T KOG1538|consen 615 --RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEF 680 (1081)
T ss_pred --HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHH
Confidence 34455566777788887777653 34566777888888877754 3322 2334445445555555555
Q ss_pred HhcCCC--------------CChhhHHHHHHHHHhcCChHHHHHHHH------HHHhCCC---CCCHHHHHHHHHHhccc
Q 036704 433 FNFMED--------------PDVVSWSSLIVGYAQFGCGEEALKLFR------RMRSSGV---RPNHVTLVGVLTACSHV 489 (634)
Q Consensus 433 ~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~~~---~p~~~~~~~l~~~~~~~ 489 (634)
...... .+..--.+-...+...|+.++|..+.- -+.+-+. ..+..+...+...+.+.
T Consensus 681 ~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKL 760 (1081)
T ss_pred hhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhc
Confidence 443321 111111223344556676666654421 1222221 22456666666667777
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-----------HHHHHHHHHHHhc
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI-----------VVWKSLLASCKTH 557 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----------~~~~~l~~~~~~~ 557 (634)
..+.-|.++|.+|-. ..+++......++|.+|..+-++. ...||. .-+...-++|.+.
T Consensus 761 ~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 788888888888753 346788888999999999999888 444442 2233445667777
Q ss_pred CCHHHHHHHHHHHHh
Q 036704 558 GNVDVGKRAAENILK 572 (634)
Q Consensus 558 g~~~~a~~~~~~~~~ 572 (634)
|+..+|.++++++..
T Consensus 831 Gr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 831 GRQREAVQVLEQLTN 845 (1081)
T ss_pred cchHHHHHHHHHhhh
Confidence 777777777777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=42.05 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=59.59 Aligned_cols=100 Identities=8% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLA 552 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~ 552 (634)
|...+..+.+.|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+ ...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44433333445666666666666665421111 0123344555556666666666666555 1111 2334444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+...|+.++|...|+++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555666666666666666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0028 Score=59.57 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR-AGRVHEAEDFINQM--AFDDDIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 553 (634)
.+|..+++..-+.+..+.|..+|.++.+. -..+..+|......-.+ .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999853 23345555555555334 56777799999998 555678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999776644 68899998888999999999999988763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=64.10 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+..+..+|...|++++|+..|+++++++|++.. +|++++.+|..+|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666666553 3666666666666666666666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0029 Score=59.29 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHH---HHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRI---MQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFD-DDI 544 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 544 (634)
..|..|-..|.-.|+++.|+...+. +.+++|-.. ....+..+.+++.-.|+++.|.+.|+.. +.. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4466666667777889988876553 333344433 2345667888888889999999988765 211 133
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKI----D--PTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
-...+|...|.-..++++|+.+..+=+.+ . .-...++.+|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567788888888899999888775542 1 22566888899999999999999988776654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0035 Score=47.57 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcccC--------CHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGV-RPNHVTLVGVLTACSHVG--------LVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3345566666889999999999999998 889999999988877643 244567788888876 899999999
Q ss_pred HHHHHHHHh
Q 036704 516 SCVVDLLAR 524 (634)
Q Consensus 516 ~~l~~~~~~ 524 (634)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00068 Score=48.12 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG-NVDVGKRAAENILKIDP 575 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 575 (634)
++..|..+...+...|++++|+..|++. ...| +...+..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566778888888999999999999887 4445 5678888999999999 79999999999999887
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0093 Score=49.65 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+++..+....-|+...--.|..++.+.|+..||...|++. ....|...+..+.++....++...|...++++.+..|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3444444466788777778999999999999999999998 4455888999999999999999999999999999888
Q ss_pred C--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 576 T--NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 576 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
. ++.....++..|..+|++++|+..|+-..+.-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 6 67778888999999999999999999887754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0061 Score=52.49 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=47.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCK 555 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 555 (634)
+..+...+...|++++|...+++......-.+ ...++..+..++...|++++|+..+++. ...| ....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444444455555555555555543211000 1224445555555555555555555554 2222 2333444444444
Q ss_pred -------hcCCHH-------HHHHHHHHHHhcCCCC
Q 036704 556 -------THGNVD-------VGKRAAENILKIDPTN 577 (634)
Q Consensus 556 -------~~g~~~-------~a~~~~~~~~~~~p~~ 577 (634)
..|+++ +|..+++++++..|.+
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 556655 5555556666666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.1 Score=50.17 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCCC-C------hhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMEDP-D------VVSWSSLIVGYAQ---FGCGEEALKLFRRMRSSGVRPNHVTL 479 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 479 (634)
..+...++-+|....+++...++++.+..+ + ...-....-++.+ .|+.++|+.++..+....-.+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445555677777777777777777642 1 1111223344555 67888888888776555556777777
Q ss_pred HHHHHHhcc---------cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC-----
Q 036704 480 VGVLTACSH---------VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH----EAEDFI---NQM----- 538 (634)
Q Consensus 480 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----- 538 (634)
..+.+.|-. ....++|...|.+.- .+.|+...--.++..+.-.|... +..++- ..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 776665532 123667777776655 44565444333333444444322 222222 111
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 539 --AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 539 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
....+-..+-.++.++.-.|++++|.+.++++.+..|+.-
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1223555667788888899999999999999999877644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.012 Score=50.78 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=79.6
Q ss_pred CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh
Q 036704 272 SPNLASWNTIIAGVASC-----SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP 346 (634)
Q Consensus 272 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 346 (634)
..|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 46778888888887654 6777778888999999999999999999987765 221 1211
Q ss_pred HHhHHHhc---CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH-HHHHHHHHHH
Q 036704 347 VCNAILQH---QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL-EMGTQLHCYI 401 (634)
Q Consensus 347 ~~~~ll~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 401 (634)
.+.+...+ +-+-|++++++|...|+-||..|+..++..+.+.+.. .+..++.-.|
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22222222 6677888888888888888888888888888876653 3334443333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00056 Score=43.14 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
.++..+..+|...|++++|+++++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988864
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.24 Score=46.75 Aligned_cols=281 Identities=9% Similarity=-0.052 Sum_probs=172.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh--hccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHH
Q 036704 56 KQNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC--SSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 56 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
..|+-..|.++-.+..+. +..|..-+..|+.+- .-.|+++.|++-|+.|.... ....--...|.-.-.+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHH
Confidence 456777777766665543 445556666666544 34689999999999997421 1111112223223346788888
Q ss_pred HHHHhccCCC--C-CccchHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhh--HHHHHHHhh---cCCCchhHhHHH
Q 036704 134 ARMVFDEMPQ--R-NVVSWTAMIAGCSQNGQENAAIELYVQMLQSG-LMPDQFT--FGSIIRACS---GLCCVGLGRQLH 204 (634)
Q Consensus 134 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~ 204 (634)
|...-+..-. | -...+.+.+...+..|+++.|+++++.-+... +.++..- -..|+.+-+ -..+...|...-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8877766543 2 33478888999999999999999998776543 3444322 223333221 112333444443
Q ss_pred HHHHHhcCCCChh-HHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccch-------HHHHHhcCCCCChh
Q 036704 205 AHVIKSEHGSHLI-SQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDF-------ARTVFNEMESPNLA 276 (634)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~-------a~~~~~~~~~~~~~ 276 (634)
.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+..++.--..+....+.++ -.+-++.|.+.|..
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchH
Confidence 33333 445432 222345678889999999999998887766654445555544443 12234556667777
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCC
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC-TSPLSLYQGMQIHSYIIKKGFYS 343 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~ 343 (634)
+--.+..+....|++..|..--+.... ..|....|..+...- ...|+-.++.+.+.+.++..-.|
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 777888888888888777665554433 367777777776554 34588888888887777755444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00088 Score=48.93 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKI----DPT---NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.+...|...|++++|+..++++++. .++ -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888888752 222 255788888889999999999998887654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0095 Score=54.90 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCN 586 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 586 (634)
|..-+..+.+.|++++|...|+.+ ...|+ +..+..++..|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567788888777776 33332 3466677777778888888888888888766664 445555677
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 036704 587 IYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888888888777653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=45.99 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=53.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
..|.+.+++++|.++++.+ ...| ++..+...+..+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678889999999999988 4445 566788888889999999999999999999999877665443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.045 Score=48.47 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH-----H
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS-----C 517 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 517 (634)
..+.++..+.-.|.+.-.+.++.+.++...+-++.....+.+.-.+.||.+.|...|++..+. .-..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345566777777888888999999998765667888888999999999999999999988765 3333333333 3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 518 VVDLLARAGRVHEAEDFINQMA--FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
....|.-.+++.+|...+.++. ...++...|.-.-+..-.|+...|++.++.+.+..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 3355667788999999998882 2235555555555556678999999999999999997543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=54.44 Aligned_cols=94 Identities=7% Similarity=0.023 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHhC------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------
Q 036704 514 RRSCVVDLLARA-GRVHEAEDFINQM------AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------ 578 (634)
Q Consensus 514 ~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------ 578 (634)
.+..+...|... |++++|++.|++. ...+ -...+..++..+.+.|++++|.++|+++.....+++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344556677777 8999999999887 1122 134677888889999999999999999887433221
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 -AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..+...+-++...|+...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12334455677889999999999998764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.28 Score=46.34 Aligned_cols=229 Identities=15% Similarity=0.153 Sum_probs=151.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChh--hHHHHHHH
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVV--SWSSLIVG 450 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~ 450 (634)
+..|.-...+.|+.+.|.++-...-..-.. -.....+.+...+..|+++.|+++++.-. +++.. .--.|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 444555556788888888888877765543 35567788899999999999999998654 23332 12223322
Q ss_pred HH---hcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 451 YA---QFGCGEEALKLFRRMRSSGVRPNHVT-LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~---~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
-. -.-+...|...-.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+ ..|.+.+....+ +.+.|
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~g 308 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSG 308 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCC
Confidence 11 12345555555544444 4677433 33345788899999999999999985 466666654332 34555
Q ss_pred ChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHH
Q 036704 527 RVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS-GKWEEVARL 600 (634)
Q Consensus 527 ~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~ 600 (634)
+ .+..-+++. ..+| +......+..+....|++..|..--+.+....|... +|..++.+-... |+-.++...
T Consensus 309 d--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred C--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHH
Confidence 4 333333333 4455 456777788888899999999999999999999654 677777776544 999999988
Q ss_pred HHHHHhCCCcCCCCccEEEeC
Q 036704 601 MGSMKERGVRKVPGQSWIEIQ 621 (634)
Q Consensus 601 ~~~~~~~g~~~~~~~~~~~~~ 621 (634)
+-+..+. ..+..|...+
T Consensus 386 lAqav~A----PrdPaW~adg 402 (531)
T COG3898 386 LAQAVKA----PRDPAWTADG 402 (531)
T ss_pred HHHHhcC----CCCCcccccC
Confidence 8766543 2333565543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.027 Score=50.10 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 599 (634)
++..|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 566688999999999999999999888554 56677888999998885543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.06 Score=47.71 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--------AFDDDIVVWKS 549 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~ 549 (634)
....++..+.-.|.+.-....++++++. ..+.++.....|...-...|+.+.|...|++. +.+....+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666677778888889999999875 55667888889999999999999999999965 34445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
....|.-.+++..|...+.++...+|.++.+.+.-+-++.=.|+..+|.+.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66677788899999999999999999999999988777777899999999999998754
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.41 Score=45.63 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-.++-.. +-++.-|..+++++.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 444455555555555544432 35555566666666666666554443211 1123445556666666666
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
..+|..++.+++. ..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666655321 2234445555666555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.45 Score=45.40 Aligned_cols=87 Identities=9% Similarity=-0.066 Sum_probs=57.2
Q ss_pred hhccccHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHhcCChH
Q 036704 385 CAAMASLEMGTQLHCYIMKT---GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS---LIVGYAQFGCGE 458 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 458 (634)
..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--+...+.|..-.-. -..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776643 344556666666777778888888888777777655543222 234455667788
Q ss_pred HHHHHHHHHHhCC
Q 036704 459 EALKLFRRMRSSG 471 (634)
Q Consensus 459 ~a~~~~~~m~~~~ 471 (634)
+|.+-+++..+..
T Consensus 339 ~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 339 EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHhhc
Confidence 8888887776653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.032 Score=44.16 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHH
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLA 523 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 523 (634)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877775544 34555666777777888888888877775421111 2222233445666
Q ss_pred hcCChHHHHHHHHhC
Q 036704 524 RAGRVHEAEDFINQM 538 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~ 538 (634)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0043 Score=52.01 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCcCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK-----ERGVRKVP 613 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~ 613 (634)
.+..++..+...|++++|...+++++..+|-+..++..++.+|...|+..+|.++|+++. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 566777788899999999999999999999999999999999999999999999998875 35765554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=44.61 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhc
Q 036704 520 DLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASS 591 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 591 (634)
....+.|++++|.+.|+.+ +..| ....-..++.+|.+.|++++|...+++.++++|.++. ++...+-++.++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3445678888888888887 3333 3456667888889999999999999999998888654 444445455555
Q ss_pred CC---------------hHHHHHHHHHHHhC
Q 036704 592 GK---------------WEEVARLMGSMKER 607 (634)
Q Consensus 592 g~---------------~~~A~~~~~~~~~~ 607 (634)
.. ..+|..-|+.+++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 44 66777777777653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.14 Score=46.96 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=101.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCccc---HHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHH
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPST---YADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMY 125 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (634)
.....+...|++++|++.|+.+... .|-++.. ...+..++.+.++++.|...+++.++........-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4556678899999999999999875 3322222 2456788899999999999999999885333333444444443
Q ss_pred HccCChHHHHHHhccCCC--CCc-------cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCC
Q 036704 126 GKCGSLEDARMVFDEMPQ--RNV-------VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCC 196 (634)
Q Consensus 126 ~~~g~~~~A~~~~~~~~~--~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 196 (634)
+....-.....-+..+.. .|. ..+..++.-|=...-..+|...+..+... .-...+ .+.+.|.+.|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~ 190 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGA 190 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCc
Confidence 311000000000111110 000 12233344443333444444433333321 001111 34444566677
Q ss_pred chhHhHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 036704 197 VGLGRQLHAHVIKSE--HGSHLISQNALIAMYTKFDRILDAWNVFSS 241 (634)
Q Consensus 197 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (634)
+..|..-++.+++.- .+........++.+|...|..++|..+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 777777777776653 222344555677778888888887776543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.024 Score=53.68 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
.++..+.-++.+.+++.+|++..++. .. +++...+-.=..+|...|+++.|+..|+++++..|.|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667888999999999999998887 33 45778888889999999999999999999999999999999999887777
Q ss_pred cCChHH-HHHHHHHHHh
Q 036704 591 SGKWEE-VARLMGSMKE 606 (634)
Q Consensus 591 ~g~~~~-A~~~~~~~~~ 606 (634)
...+++ ..++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 766555 4788888864
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=49.55 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----------------CHHHHH
Q 036704 438 DPDVVSWSSLIVGYAQ-----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG----------------LVEEGL 496 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~ 496 (634)
..+-.+|..++..|.+ +|..+-....+..|.+-|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4556666666666654 3666777778888888898888999999988876532 346688
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+++++|... |+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 899999876 999999999999998877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.21 Score=39.33 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=89.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
+...|..++..++..+..... +..-++-+|.-...+-+-+-..+.++.+-+-+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 445688889999998887652 55556666666666666667777777765433322 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 531 AEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 531 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
....+-.++ .+....+..+......|+-+.-.+++..+.+....+|..+..++.+|.+.|+..+|.++++++=+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444443332 234455666777888999999999999988766668899999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0036 Score=45.65 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-------A-FDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
.+++.+...|...|++++|++.+++. + ..|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556666666777777776666665 1 1122 457778888888888888888888887653
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0099 Score=55.89 Aligned_cols=222 Identities=15% Similarity=0.086 Sum_probs=134.1
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHhhcCChHHHHHHHhcCC-------C--CChhhHHHHHH
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDV----FVMNGLMDMYVKCGSLGSARELFNFME-------D--PDVVSWSSLIV 449 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~ 449 (634)
.-+|+.|+......+|+.+++.|.. |. .+|..|..+|.-.+++++|+++-..=. . -...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888889999988887754 43 456667788888888888887654211 0 11122233444
Q ss_pred HHHhcCChHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHhcccCC--------------------HHHHHHHHHHHH-
Q 036704 450 GYAQFGCGEEALKLFRR----MRSSGVR-PNHVTLVGVLTACSHVGL--------------------VEEGLQLYRIMQ- 503 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~----m~~~~~~-p~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~- 503 (634)
.+--.|.+++|+-.-.+ ..+.|-+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44455666665432221 2222211 122334444444543332 334444444221
Q ss_pred --HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 504 --NEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 504 --~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.+.|-.. --..|..|.+.|.-.|+++.|+..-+.- +... ....+..+..++.-.|+++.|.+.|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111111 1234556666666778899998765432 2221 345778899999999999999999998764
Q ss_pred ----cCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 573 ----IDP--TNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 573 ----~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+.- ..+...++|+..|.-..++++|+.++.+=+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 322 256778889999999999999999877543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.2 Score=46.12 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL 491 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 491 (634)
+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-.++-+.++ .+.-|.-.+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334444445555666666666666666666666666666666666665554443322 13444445566666666
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 492 VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
.++|.+.+.+.. |.. -.+.+|.+.|++.+|.++
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 666665554442 111 344555566666555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.47 Score=47.87 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh---------
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV--------- 442 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--------- 442 (634)
+..+...+...+.+...+..|.++|..|-+. ..+++.....+++++|.++-++.++ +++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3345555555666677778888888877532 3567788889999999999998875 3332
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 443 --SWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 443 --~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
-|.---.+|.+.|+..+|..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334456788889999999998887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=45.57 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCC-CHHHH
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRVHEAEDFINQM-AFDD-DIVVW 547 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~ 547 (634)
+-|...|..|..+|...|+.+.|..-|....+- ..++...+..+..++... ....++.++|+++ ..+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 336788888888888899999988888888753 233455555666555433 3567788888888 4445 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..+...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 78888889999999999999999998876554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.07 Score=52.05 Aligned_cols=141 Identities=10% Similarity=0.153 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 036704 457 GEEALKLFRRMRS-SGVRPN-HVTLVGVLTACSHV---------GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLAR 524 (634)
Q Consensus 457 ~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 524 (634)
.+.|+.+|.+... ..+.|+ ...|..+..++... .+..+|.++-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4567777777772 123555 45555555544322 123344444444442 222 44444455555555
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS--AALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.++++.|...|++. ...|+ ..+|......+...|+.++|.+.++++++++|.-. .+....+..|+..+ .++|..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 56666666666666 44453 34555555555566666666666666666666532 23333343455444 3444444
Q ss_pred H
Q 036704 601 M 601 (634)
Q Consensus 601 ~ 601 (634)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 3
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.17 Score=45.00 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=67.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA 525 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (634)
...+...|++.+|...|+.+........ ......++.++.+.|+++.|...+++..+.++-.|... +...+.+.+.-
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH
Confidence 3445555666666666666655421111 23344455555566666666666666555433333221 11111111100
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----------------HHHHHHHH
Q 036704 526 GRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA-----------------LVLLCNIY 588 (634)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~ 588 (634)
+..... + ......+...+|...++.+++..|+++.+ -..++..|
T Consensus 91 ~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00112234456777777777777776542 22467789
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036704 589 ASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~ 607 (634)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=55.04 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++..+..+|.+.+++..|++...++++.+|+|.-+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467788889999999999999999999999999999999999999999999999999999863
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.062 Score=43.03 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 471 GVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888777877887777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.6 Score=41.24 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=111.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHhc
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD--VVSWSSLIVGYAQF 454 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~ 454 (634)
.|.-...+|...+++++|...+.+..+.- ..+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35555667888889999888877776321 112222211 123344444444444322 22455566778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCChHH
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI----IPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
|.++.|-..+++.-+. ....++++|+++|++...-... .--...+......+.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8877777766664331 1223444555555444321100 0112334445566677777777
Q ss_pred HHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHhcCChHHHH
Q 036704 531 AEDFINQM-------AFDDDI-VVWKSLLASCKTHGNVDVGKRAAENILK----IDPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 531 A~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
|-..+.+- ..-|+. ..+-..+-.+.-..|+..|...++.-.+ ..|++..+...|+.+| ..|+.|++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 76666554 112222 2345555666677788888888887554 4466777788887765 457777766
Q ss_pred HHH
Q 036704 599 RLM 601 (634)
Q Consensus 599 ~~~ 601 (634)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.6 Score=44.20 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDV---VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL-T 484 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~ 484 (634)
+...|+..+.--.+.|+.+.+.-+|+++.-|-. ..|-..+.-....|+.+.|..++....+-..+ .......+- .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 456788888888899999999999999875433 24555555555558888888888776655333 322222222 2
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHH----HHH-H
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRSCVVDLLARAGRVHEAE---DFINQM-AFDDDIVVWKSL----LAS-C 554 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l----~~~-~ 554 (634)
-.-..|+...|..+++.+... . |+.. .-..-+....+.|+.+.+. +++... ..+.+..+...+ .+. +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 234578999999999999975 3 5432 3334456667888888888 555544 222232222222 222 4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
.-.++.+.|..++.++.+..|++...|..+......++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45689999999999999999999999999988876665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.3 Score=42.95 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHh----hcCChHHHHHHHhcCCCCChh---h
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFV-----MNGLMDMYV----KCGSLGSARELFNFMEDPDVV---S 443 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~---~ 443 (634)
.+|..++....+.++...|.+.+.-+....+..+... -..+.+..+ ...+...-+.+|+.+...|+. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4677777788888888888888877764433221110 011112222 112233444555555433332 1
Q ss_pred HHHHHHH---HHhcCC-hHHHHHHHHHHHhCCCCC-CHH----HHHHHHHHhccc---CCHHHHHHHHHHHHHHhCCCC-
Q 036704 444 WSSLIVG---YAQFGC-GEEALKLFRRMRSSGVRP-NHV----TLVGVLTACSHV---GLVEEGLQLYRIMQNEYGIIP- 510 (634)
Q Consensus 444 ~~~l~~~---~~~~~~-~~~a~~~~~~m~~~~~~p-~~~----~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~- 510 (634)
-.-|+.+ +-+.|. -++|+.+++...+- .| |.. ++..+=.+|.+. ..+.+-..+-+-+ +..|+.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~~i 455 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCcc
Confidence 1222222 344454 77888888887764 33 222 222222333221 2233333333333 3337777
Q ss_pred ---ChhHHHHHHHH--HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 511 ---TRERRSCVVDL--LARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 511 ---~~~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
+...-|.|.++ +...|++.++.-.-.-+ .+.|++.++..++-+.....++++|...+..+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444555433 45678888887666655 77888889998888888888999998887764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.2 Score=44.83 Aligned_cols=170 Identities=10% Similarity=0.045 Sum_probs=101.6
Q ss_pred hhHHhhcCChHHHHHHhhcccCCCCccchHHHHHH----HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccC
Q 036704 19 WDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSS----LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLR 94 (634)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (634)
+.+..+..-+.-|..+.+.-.-. ++... .+.+. +-+.|++++|...|-+.... +.|. .+++-+....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d-~d~~~-~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLD-EDTLA-EIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCC-HHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcCHH
Confidence 45555666667777766543322 11111 33332 56788999988887766542 3332 4666677777
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCcc-chHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 95 SLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVV-SWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
+....-.+++.+.+.|. .+...-+.|+.+|.+.++.++..+..+...+-... -....+..+.+.+-.++|..+-....
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 77778888888888884 44455567888999999888888877766521111 23455666666666666655544332
Q ss_pred HCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 174 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
. +......++. ..+++++|.+.+..
T Consensus 491 ~-----he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 491 K-----HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred c-----CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 2 2233333333 45566666665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.41 Score=43.75 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS---LLASCKTHGNVDV 562 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 562 (634)
....|+..+|..+|+..... ..-+....-.++.+|...|+.+.|..++..++..-....+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44556666666666666643 222344445566677777777777777776643332222222 2223333333332
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
... +++-...+|+|...-..++..+...|+.++|++.+=.++++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 22333456767777777777777777777777666655554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2.2 Score=43.79 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH-----
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS----- 446 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 446 (634)
+-+....-.+...+.+.|.-++|.+.+-+ .+.+ .+.+..+...+++.+|.++-++..-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34444555566666777766666655432 2211 234556666677777777777665444433211
Q ss_pred ---------HHHHHHhcCChHHHHHHHHHHHh
Q 036704 447 ---------LIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 447 ---------l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
-|..+.+.|++-+|.+++.+|.+
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 13345556666666666666643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.1 Score=40.26 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKERGVRKV 612 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 612 (634)
.+.+-|.+.|.+..|..-++++++.-|+.+ .++..+..+|.+.|..++|...-+- +..+.+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCC
Confidence 355668899999999999999999766644 4566677889999999999887554 44444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.042 Score=42.88 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=75.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHhcC
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID-PTN---SAALVLLCNIYASSG 592 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g 592 (634)
.-++...|+++.|++.|.+. ..-| ....|+.-.+++.-.|+.++|+.-+++++++. |.. -.+|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35667899999999999987 4444 67899999999999999999999999999854 442 235666777899999
Q ss_pred ChHHHHHHHHHHHhCCCc
Q 036704 593 KWEEVARLMGSMKERGVR 610 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~g~~ 610 (634)
+-+.|..-|+...+.|-+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 999999999998887743
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.093 Score=47.32 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLL 551 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 551 (634)
.|+.-+.. .+.|++..|...|....+.+.-.+ ....+--|.+++...|++++|..+|..+ +..| -+..+..+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 355667777777777776432111 1222334667777777777777777766 2223 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
....+.|+.++|...|+++.+..|..+.+-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777888888888888888888887665443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.27 Score=39.83 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 036704 560 VDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~ 580 (634)
...|..-|+++++..|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 568888888999999987643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.27 Score=40.82 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=69.9
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
..-+...|++++|..+|+-+..- + .-+..-+..|..++...+++++|+..|... -...|+...-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44456789999999999988753 2 224556778889999999999999999877 2234556677788999999999
Q ss_pred HHHHHHHHHHHh
Q 036704 561 DVGKRAAENILK 572 (634)
Q Consensus 561 ~~a~~~~~~~~~ 572 (634)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999888
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.074 Score=47.94 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM--AFD---DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLC 585 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 585 (634)
.|+.-++. .+.|++.+|...|... +.+ -.+..+--|..++...|+++.|...|..+.+..|+ -|.++.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 4678899999999887 211 13445566889999999999999999999986665 556788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 036704 586 NIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+..+.|+.++|-..|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.47 Score=48.29 Aligned_cols=161 Identities=16% Similarity=0.055 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSG-VRPN-----HVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
.+..+++...-.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ..+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 44455555666677777777776655432 2211 1223444443333 45678888888888854 4565
Q ss_pred hHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH-
Q 036704 513 ERRSC-VVDLLARAGRVHEAEDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL- 584 (634)
Q Consensus 513 ~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l- 584 (634)
..|.. -...+...|++++|++.|++. ..+. ....+..++..+....++++|...+.++.+.+.-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 55543 336667788999999999876 1111 234566677778888999999999999988666555544443
Q ss_pred HHHHHhcCCh-------HHHHHHHHHHHh
Q 036704 585 CNIYASSGKW-------EEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~-------~~A~~~~~~~~~ 606 (634)
+.++...|+. ++|.++++++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4456677888 888888887753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.077 Score=41.46 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=68.8
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH--HHHHHHHHHHHhc
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM----AFDDDI--VVWKSLLASCKTH 557 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~--~~~~~l~~~~~~~ 557 (634)
-+....|+.+.|++.|.+...- .+.....||.-..++.-.|+.++|++-+++. +.+... ..|-.-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567889999999999988852 3346778898899999999999999888876 222111 1334444557888
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 036704 558 GNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~ 578 (634)
|+.+.|..-|+.+-++..+-.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 999999999999888775433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=40.13 Aligned_cols=215 Identities=21% Similarity=0.158 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 036704 390 SLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQFGCGEEALKL 463 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 463 (634)
....+...+.......... ...........+...+++..+...+.... ......+......+...++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444333221 24455555666666666666666666543 23333455555566666667777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 464 FRRMRSSGVRPNHVTLVGVLT-ACSHVGLVEEGLQLYRIMQNEYGI--IPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 464 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
+.........+. ........ .+...|+++.|...+.+.... .. ......+......+...++.++|...+... .
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666533321 11122222 566777777777777776421 11 112233333334455667777777777776 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 540 FDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 540 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..++ ...+..+...+...++++.|...+.......|.....+..+...+...|+.+++...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333 556667777777777777777777777777776555566666666666667777777766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.059 Score=52.51 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI----VVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
+...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777765 555543 34777777777777777777777777775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.84 Score=44.06 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSG---VRPNHVTLVGVLTACSH---VGLVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
-.++-+|....+++..+++.+.+.... +.-....-...+.++.+ .|+.++|.+++..+... .-.+++.++..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 345557999999999999999998752 11122333344556666 89999999999995544 666788888877
Q ss_pred HHHHH----h-----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HHHH-h---c-CCC
Q 036704 519 VDLLA----R-----AGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVD----VGKRAA---ENIL-K---I-DPT 576 (634)
Q Consensus 519 ~~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~---~-~p~ 576 (634)
...|- . ....++|++.|.+. ...|+...--.++..+...|... +..++- .... + . .-.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76653 2 23478899999887 66676544444444444444322 222222 1111 1 1 123
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+-..+..++.+..-.|++++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5556778888899999999999999999865
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.8 Score=43.52 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (634)
-+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..++|++-+++-+.... +.-|.-...+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 344444555666777777777655443 46777777777778888888777777666531 3345556677778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.|+.++|..++-+.-... ..+.+|.+.|++.+|.+.
T Consensus 757 ~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 888888877765532211 456677777777777655
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.71 E-value=2 Score=41.02 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=63.5
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 415 GLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
..+.-+...|+...|.++..+..=|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344445556666666666666666666677777777777776665554321 1134566666666777777666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 666655421 133456666677777666654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.14 Score=47.11 Aligned_cols=160 Identities=11% Similarity=-0.059 Sum_probs=118.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCC
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS----CVVDLLARAGR 527 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 527 (634)
--+|+..+|...|+++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3468888888899999887 355778888888899999999988888888875 4466664444 33445568999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHH
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+++|++.-++. .+.| |....++..-.+...|+++++.++..+-...-.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988 5544 6778888888899999999999998875542221 1223334555677889999999999
Q ss_pred HHHHhCCCcCCCC
Q 036704 602 GSMKERGVRKVPG 614 (634)
Q Consensus 602 ~~~~~~g~~~~~~ 614 (634)
+.=.-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9665444554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.2 Score=40.84 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
......|+..+|...|+...... .-+...-..++.+|...|+.+.|..++..+-.+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888887763 224566677788888889999888888876532 1111222233455666777777
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 529 HEAEDFINQMAFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI--DPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 529 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++. .-.+..+-..++.++.-.|.-+.+...
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 77777777775555 6777778888888999999999888887774 345777888888888877755544333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=36.94 Aligned_cols=127 Identities=11% Similarity=0.032 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
....++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556677777777888888888887776 356667777777777643 3333344332 12223344566777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTH-GNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.+.+-++++.-++.+++.. ...+..+... ++.+.|++.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777777888887777532 2223333333 777777777665 235556666665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.37 Score=44.57 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=113.4
Q ss_pred hhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHhcccCCHH
Q 036704 421 VKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTL----VGVLTACSHVGLVE 493 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~ 493 (634)
.-.|+..+|-..++++.+ .|...+.---.+|.-.|+...-...++++... ..|+...| ..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345778888888888774 45667777778899999999999999888765 24444332 34445666889999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDD------IVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
+|++.-++..+- .+.|.....++...+...|++.++.++..+-....+ ...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887742 233666777888889999999999999987732221 223445556677789999999999
Q ss_pred HHHHh--cCCCCchhHH
Q 036704 568 ENILK--IDPTNSAALV 582 (634)
Q Consensus 568 ~~~~~--~~p~~~~~~~ 582 (634)
++-+- ...++..+..
T Consensus 271 D~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARD 287 (491)
T ss_pred HHHHHHHhhccchhhhh
Confidence 87543 5555664433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.23 Score=44.70 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHc-----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhH
Q 036704 273 PNLASWNTIIAGVAS-----CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPV 347 (634)
Q Consensus 273 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 347 (634)
.|-.+|-+.+..+.. .++++=....++.|.+-|+.-|..+|..||..+-+.. +.|...+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHH
Confidence 566677777766644 3667777778889999999999999999987665432 2333333
Q ss_pred HhHHHhc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH-HHHHHHHHHH
Q 036704 348 CNAILQH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL-EMGTQLHCYI 401 (634)
Q Consensus 348 ~~~ll~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 401 (634)
-..++.- +-+-+++++++|...|+.||..+-..+++++.+.+-. .+..+.+-.|
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3333322 5566888999999999999999999999999887753 3344444444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.17 Score=40.48 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHH--------------HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQ--------------NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--- 538 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 538 (634)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555666666555555554332 11133344444555555555555555555544443
Q ss_pred -CCCCCHHHHHHHHHH
Q 036704 539 -AFDDDIVVWKSLLAS 553 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~ 553 (634)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334444444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.044 Score=31.94 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
.+..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.8 Score=40.76 Aligned_cols=126 Identities=12% Similarity=0.060 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-IIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 553 (634)
..|...+.+..+..-++.|..+|-++.+. + +.+++.+++++++-++ .|+...|..+|+-- .++.++......+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777888899999999999987 6 6788999999998665 68899999999865 333345555667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
+...++-+.|..+|+..++.-.++ ..+|..++.--+.-|+...|..+=+++
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 788999999999999776533222 457777777666778776665544444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.5 Score=39.83 Aligned_cols=128 Identities=12% Similarity=0.007 Sum_probs=61.8
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHh-------cCCC-ChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHh
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC-------TSPL-SLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAG 357 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-------~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (634)
.+.|+.+.|..++.+....-...++.....+...| .+.+ +++.|...++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a--------------------- 62 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA--------------------- 62 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH---------------------
Confidence 46789999999998876543122222222222222 2233 555555554433
Q ss_pred HHHHHHHH-HHHCCCCCCH-----hHHHHHHHHhhccccHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHH
Q 036704 358 ELFRLFSL-MLASQTKPDH-----ITFNDVMGACAAMASLE---MGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 358 ~a~~~~~~-~~~~~~~~~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (634)
.++++. -......|+. .++..++.++...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.
T Consensus 63 --~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 63 --YDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred --HHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhH
Confidence 333322 1111122322 34556666666655544 344444444333222 23333344455555666666
Q ss_pred HHHHHhcCC
Q 036704 429 ARELFNFME 437 (634)
Q Consensus 429 A~~~~~~~~ 437 (634)
+.+.+.+|.
T Consensus 140 ~~~~L~~mi 148 (278)
T PF08631_consen 140 YEEILMRMI 148 (278)
T ss_pred HHHHHHHHH
Confidence 666666654
|
It is also involved in sporulation []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.18 Score=42.17 Aligned_cols=72 Identities=26% Similarity=0.319 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCCChhHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIPTRERR 515 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 515 (634)
....++..+...|+++.|..+.+++.... +-+...+..++.++...|+...|.+.|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666777888888888888888764 33677888888888888888888888876643 35777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.042 Score=32.07 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.+|..++..|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666667777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.8 Score=41.52 Aligned_cols=103 Identities=10% Similarity=0.211 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA-F-DDD--IVVWKSLL 551 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~--~~~~~~l~ 551 (634)
..+=..+..++.+.|+.++|++.++++.+.+.......+...|++++...+.+.++..++.+.. + -|. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3334556677778899999999999988653332345566788899999999999999888873 1 233 33555554
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHhcCCCCc
Q 036704 552 ASCKTHGN---------------VDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 552 ~~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 578 (634)
-.+...++ -..|.+.+.++.+.+|..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44444443 1346678888888887654
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=5.4 Score=42.20 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
-++..+....+++++..+.+..+.. ++..|..++..+.+.+..+.-.+...+++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3455666777788888887777533 67778888888877776655555555444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.11 Score=44.06 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKT 556 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 556 (634)
.-+...|++++|..-|..+... .++. ...|..-..++.+.+.++.|++-..+. .+.|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3477889999999999988853 3332 234444456777888999988877766 55553 3455555667888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH--HHHHHHHHhCC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV--ARLMGSMKERG 608 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~g 608 (634)
...+++|++-|+++++.+|....+-...+.+=-......++ .+++.+++..|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999998777666666554444433333 35566777766
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.63 Score=43.62 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=97.1
Q ss_pred CHhHHHHHHHHHHHCC--CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHH--hCCCCc---hhHHHHHHHHHhhcCChH
Q 036704 355 QAGELFRLFSLMLASQ--TKPDHITFNDVMGACAAMASLEMGTQLHCYIMK--TGLALD---VFVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~ 427 (634)
+.++++..+.....+- ..--..++..+..+.+..|.++++...--.-++ ....-+ ...|..+..++.+.-++.
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~ 100 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFH 100 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666766666655421 111224566666666777766665443211111 001101 122333333343333444
Q ss_pred HHHHHHhcCCC-----C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHhcccCCHHH
Q 036704 428 SARELFNFMED-----P---DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV---RP--NHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 428 ~A~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~ 494 (634)
+++.+-..-.. + .-....++..++...+.++++++.|+...+--- .| ....+..+-..|.+..|+++
T Consensus 101 kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 101 KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEK 180 (518)
T ss_pred hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhH
Confidence 44443332211 1 001223344455555566666666666543210 11 13445555566666666666
Q ss_pred HHHHHHHHHH---HhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQN---EYGIIPTRERRS-----CVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 495 a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g 558 (634)
|.-+..+..+ .+++..-..-|. .+.-++...|++-.|.+.-++. +..+ .......+...|...|
T Consensus 181 al~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 181 ALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG 260 (518)
T ss_pred HhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc
Confidence 6655444322 112221111122 1223444555555555555443 2222 2334455556666666
Q ss_pred CHHHHHHHHHHHHh
Q 036704 559 NVDVGKRAAENILK 572 (634)
Q Consensus 559 ~~~~a~~~~~~~~~ 572 (634)
+.+.|..-|+.+..
T Consensus 261 d~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 261 DLERAFRRYEQAMG 274 (518)
T ss_pred cHhHHHHHHHHHHH
Confidence 66666666665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.67 E-value=2.1 Score=40.37 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=62.4
Q ss_pred HHHHHhhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHH---
Q 036704 416 LMDMYVKCGSLGSARELFNFMED-------P--DVVSWSSLIVGYAQFGCGEEALKLFRRMRS----SGVRPNHVTL--- 479 (634)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~--- 479 (634)
+..++.-.+.++++++.|+...+ | ....+-.|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444455555666655554331 1 223566666666777777776655554432 1222111112
Q ss_pred --HHHHHHhcccCCHHHHHHHHHHHHHH---hCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 480 --VGVLTACSHVGLVEEGLQLYRIMQNE---YGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 480 --~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
-.+.-++...|....|.+.-++..+- .|-.+ .......+.+.|...|+.+.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22333455556665555555544322 13222 2334456667777777777777766654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.3 Score=35.13 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
....-+..+..+|+-+.-.+++..+...+ .|++...-.+..+|.+.|+..++.+++.++-++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34445566666666666666666665432 556666666667777777777777766666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.6 Score=47.55 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHH----hcCCh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-----RRSCVVDLLA----RAGRV 528 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~ 528 (634)
.-...+|.-+... ++ ..+..++....-.||-+.+++.+.+..+..++.-... .|..++..+. ...+.
T Consensus 174 ~~G~G~f~L~lSl-LP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3345556666554 23 3456677777888999999999998876434433222 2233332222 35678
Q ss_pred HHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC----CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 529 HEAEDFINQM-AFDDDIVVWKS-LLASCKTHGNVDVGKRAAENILKID----PTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+.|.++++.+ ..-|+...|.- -.+.+...|+.++|++.++++.... +-....+..+++.+.-+++|++|.+.+.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 8999999999 44566655543 3455778999999999999877522 2255678889999999999999999999
Q ss_pred HHHhCC
Q 036704 603 SMKERG 608 (634)
Q Consensus 603 ~~~~~g 608 (634)
++.+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 998754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.082 Score=31.37 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++..|+.+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988854
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4 Score=36.91 Aligned_cols=200 Identities=20% Similarity=0.127 Sum_probs=146.4
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh-hhHHHHHH-
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKT-GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDV-VSWSSLIV- 449 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 449 (634)
...+......+...+++..+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 466677777888888888888888777753 3334556666777777888888999999887764 222 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGV--RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAG 526 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 526 (634)
.+...|+++.+...+++...... ......+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 78899999999999999866321 123344444455567788999999999999853 333 3677788888999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 527 RVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+++.|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999988 44454 555666666666777899999999999998887
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.7 Score=41.49 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=97.6
Q ss_pred ChHHHHHHHhcCC---CCC---hhhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 425 SLGSARELFNFME---DPD---VVSWSSLIVGYAQF---------GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 425 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
..+.|..+|.+.. +.| ...|..+..++... .+..+|.++.++.++.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4677888898877 433 34555555444322 23456778888888876 45788888888888888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI---VVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~a~ 564 (634)
++++.|...|++.. .+.|+. ..+........-.|+.++|.+.+++. ...|.. ......+..|... ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999988 456653 34545555566789999999999994 666642 3333344455444 577788
Q ss_pred HHHHHHHh
Q 036704 565 RAAENILK 572 (634)
Q Consensus 565 ~~~~~~~~ 572 (634)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87766444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.5 Score=37.28 Aligned_cols=63 Identities=6% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHhc-CChHHHHHHHHhC-----CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 517 CVVDLLARA-GRVHEAEDFINQM-----AFDDDIV---VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 517 ~l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+.+.|... .+++.|+..|+.. +.+.+.. .+......-...+++.+|+.+|+++....-+++.
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 344455444 5677777777766 2222222 3333344446788999999999999886655543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.10 E-value=13 Score=44.57 Aligned_cols=313 Identities=9% Similarity=0.013 Sum_probs=177.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCC--CCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH----h
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDREL--IPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL----Q 353 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~ 353 (634)
.+..+-.+++.+.+|+..++.-..... .-...-|-.+...|...++++...-+... ...+..+++.++ .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-----r~a~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-----RFADPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-----hhcCccHHHHHHHHHhh
Confidence 566677888999999999988311111 11223344445588888888877766543 122333444444 2
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
+++..|..-|+++.+.+ ++...+++-++......+.++.+.-..+-......+-....++.=+.+-.+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 38889999999998875 44467788888888888888877765555443332222233344456667888888877776
Q ss_pred hcCCCCChhhHHHH-H-HHHHhc--CChHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 434 NFMEDPDVVSWSSL-I-VGYAQF--GCGEEALKLFRRMRSSGVRPN---------HVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 434 ~~~~~~~~~~~~~l-~-~~~~~~--~~~~~a~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
. +.+..+|... + ..+.+. .|.-.-....+.+++.-+.|- ...|..++....- .++-.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~ 1611 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELEN 1611 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHH
Confidence 6 4555566555 2 222222 222222234444433322220 1222222222111 11111
Q ss_pred HHHHHhCCCCChhHHH-H--HHHHHHhcCChHHHHH---HHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 036704 501 IMQNEYGIIPTRERRS-C--VVDLLARAGRVHEAED---FINQM----AFDD-----DIVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 501 ~~~~~~~~~~~~~~~~-~--l~~~~~~~g~~~~A~~---~~~~~----~~~~-----~~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
......++.++..+.+ . ...-+.+.+....+.+ .+++. ...| -..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111113333222111 1 1111112222222222 22222 1122 35689999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 566 AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
.+-.+.+.. -+.++...+..+.+.|+...|+.++++..+.+.+
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 998888877 4667888899999999999999999998866543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.2 Score=44.77 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=103.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCC
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGS 130 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 130 (634)
.....-+++++++.++.+.-.-.+.+| ....+.+++-+-+.|.++.|+++..+-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 455677888888777775221111233 4457888888888999998888754322 23455668899
Q ss_pred hHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 131 LEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 131 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.+.-.|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888765 556899999999999999999998887654 455666666778877777777666665
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 036704 211 EHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 242 (634)
|- ++.-..++.-.|++++..+++.+.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 42 345555666678888877777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.9 Score=34.45 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
.++..+...+.......+++.+... + ..++..++.++..+++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 4555666666666666666666654 2 24555566666666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.4 Score=44.19 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred HHHhhcCChHHHHHHHh--cCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 418 DMYVKCGSLGSARELFN--FME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
....-.++++++.++.. ++. .-+....+.++.-+.+.|..+.|+.+.. |+.+- .....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHH
Confidence 34455678888655554 222 2224446777777778888888887632 33222 233456788888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
|.++.++ .++...|..|.+...+.|+++-|++.|++.+ -+..|.-.|...|+.+.-.++.+.+....
T Consensus 337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7766332 3366788889999999999999999998886 35567777888888877777776665544
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
- ++....++.-.|+.++-.+++.+.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3 333444455568888888887643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.98 E-value=10 Score=40.50 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhcCCCCCCcc--cHHHHHHHhh-ccCChhHHHHHHHHHHHcCCCCCcc-----hhhHHHHHHHccCChHH
Q 036704 62 EALVAFDFLQNNTNFRIRPS--TYADLISACS-SLRSLQLGRKVHDHILSSKCQPDAV-----LHNHILNMYGKCGSLED 133 (634)
Q Consensus 62 ~A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 133 (634)
-|+..++.+.+....+|... ++..+...+. ...+++.|+..+++.....-.++-. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45566666664323333333 3444555554 5567888888887665443222211 1224455555555444
Q ss_pred HHHHhccCCC----CCccc----hHHH-HHHHHhCCChhHHHHHHHHHHHCC---CCCChhhHHHHHHHhh--cCCCchh
Q 036704 134 ARMVFDEMPQ----RNVVS----WTAM-IAGCSQNGQENAAIELYVQMLQSG---LMPDQFTFGSIIRACS--GLCCVGL 199 (634)
Q Consensus 134 A~~~~~~~~~----~~~~~----~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~ 199 (634)
|...+++..+ ..... +..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7666665432 11111 2222 222223378888888887776432 2344444555555543 4455566
Q ss_pred HhHHHHHHHHhcC---------CCChhHHHHHHHHH--HhcCChhHHHHHHhccC
Q 036704 200 GRQLHAHVIKSEH---------GSHLISQNALIAMY--TKFDRILDAWNVFSSIA 243 (634)
Q Consensus 200 a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~ 243 (634)
+.+..+.+..... .|...++..+++.+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666665543221 23445666666554 45677777776665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=4 Score=35.02 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH--HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChHHHH
Q 036704 459 EALKLFRRMRSSGVRPNHVTLV--GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE----RRSCVVDLLARAGRVHEAE 532 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 532 (634)
+.....+++.....+....++. .+...+...+++++|...++.... .+.|.. +--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455555555543222222222 234556677777777777776653 222221 1123446666777777887
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 533 DFINQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 533 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..++... ..........-...+...|+-++|+..|+++++..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 7777763 222344455556667777888888888887777664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.86 Score=41.20 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=76.1
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----------
Q 036704 428 SARELFNFME--DPDVVSWSSLIVGYAQF-----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG---------- 490 (634)
Q Consensus 428 ~A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------- 490 (634)
..++.|..+. +.|-.+|-..+..+..+ +.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455566665 56777787777776643 456667777888999999999999999998876543
Q ss_pred ------CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 491 ------LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 491 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
+-+=+++++++|... |+.||..+-..|++++.+.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 123477899999866 9999999999999999887753
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=12 Score=39.83 Aligned_cols=260 Identities=8% Similarity=-0.033 Sum_probs=117.2
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
+..+.+.+++...+..+.. .+.+...-.....+....|+.+.|......+-..|.. ..+..-.
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~------------~p~~cd~ 168 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS------------LPNACDK 168 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------CChHHHH
Confidence 3445566777766653211 1334444556667777778776665555554433311 2334445
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHhhcCChHHHHHHHhcCCCCC
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD-VFVMNGLMDMYVKCGSLGSARELFNFMEDPD 440 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 440 (634)
+|....+.|...+...+.. +......|+...|..+...+ .++ ......++..+.. ...+...+.... ++
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~ 238 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQND---PNTVETFARTTG-PT 238 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CC
Confidence 5555555553333333333 33344555555555555443 111 1122233333322 223333322221 11
Q ss_pred hhhHHHHHHH--HHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 441 VVSWSSLIVG--YAQFGCGEEALKLFRRMRSSG-VRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 441 ~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
...-..++-+ -....+.+.|..++....... +.+. ......+.......+...++...++.... ...+....
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~ 315 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLL 315 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHH
Confidence 1111111111 112345567777777654432 2222 12233333333333224445555444331 11233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQMA--FDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
..-+....+.++++.+...+..|+ .+-...-.-=+.+++...|+.++|...|+++.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444445556677777777777762 11122222234455455677777777777763
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.38 E-value=8.6 Score=37.72 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=87.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC--hh
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT--RE 513 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 513 (634)
....+|..+...+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445578888999999999999999999988754222 3344444566677889999999988887762 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFI-NQMAFDDDIVVWKSLLASCKTH------GNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
....+...+.. ..+.....- .......-...+..+..-+... ++.+++...|+.+.+..|....+|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 0000000112333333333344 78899999999999999998888888887
Q ss_pred HHHhc
Q 036704 587 IYASS 591 (634)
Q Consensus 587 ~~~~~ 591 (634)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.9 Score=41.42 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchhHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKI-DPTNSAALVL 583 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~ 583 (634)
..+..++.+.|+.++|++.++++ +..| ...+...|+.++...+.+.++..++.+.-+. -|+++...+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 34555666666777776666666 2222 2335566666666666666666666665443 3444444333
|
The molecular function of this protein is uncertain. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.17 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+|..+...|...|++++|...|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666677777777777777666663
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.16 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
++..|...|...|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888999999999999998554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.55 Score=43.25 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.++..+++.+...|+.+.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455566666666666666666665 3333 555666666666666666666666665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.6 Score=34.44 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-HHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT-LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRSCV 518 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 518 (634)
...|..-+. +.+.+..++|+.-|..+.+.|...-+.. ...........|+...|...|+++... ...|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHH
Confidence 334444443 4566788999999999998875533222 223344566788999999999998865 3333221 11111
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 519 --VDLLARAGRVHEAEDFINQMAFD--D-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 519 --~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.-.+...|.++....-.+.+... | -...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788888888888887322 2 234556777777889999999999988876
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=6.7 Score=35.45 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+..-|.+.|.+..|..-++++ ..-| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3557888999999999988888 2122 234666778889999999999887666655666665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=11 Score=37.66 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
|.....+++..+...-+..-++.+-.+|.. .+-..|..++.+|... ..++-..+|+++++..+. |...-..|+.-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 444455556666655555555555555542 4444566666666666 446666666666665322 233333333333
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPT------RERRSCVVDLLARAGRVHEAEDFINQM----AFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 556 (634)
.+ ++.+.+..+|.++... +.|. ...|..++... ..+.+.-..+..++ +...-...+..+..-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 6666666666666542 2231 12233333211 23444444444444 333334455555566666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--------------------cCChHHHHHHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS--------------------SGKWEEVARLMGSMK 605 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 605 (634)
..++++|++++..+++.+..+..+-..++.-+.. ..++-++..-|++.+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 6777777777777777666666665555554443 446667777777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.88 E-value=18 Score=40.26 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=54.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
...-+.....+++|.-.|+..-+. .--+.+|...|+|.+|..+..++.. +-..-..+-..|+.-+...+
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcc
Confidence 333344455666666655553221 1234566667777777776665532 11111222245666777777
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036704 527 RVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 569 (634)
++-+|-++..+....|.. .+..+++...+++|.++...
T Consensus 1014 kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 777777777776433321 12223344445555554443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.1 Score=41.87 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=40.5
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...|+++.+.+.+..... -+.....+...++....+.|++++|...-+.| + ...++.+...........|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3445555555555554442 22233334444555555555555555555544 1 112333333333333444445555
Q ss_pred HHHHHHHHhcCCC
Q 036704 564 KRAAENILKIDPT 576 (634)
Q Consensus 564 ~~~~~~~~~~~p~ 576 (634)
.-.++++..++|+
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 5555555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.5 Score=45.36 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHhcccCCHHHHHHH
Q 036704 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV----GVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~ 498 (634)
.++++.|+.-+..+. ...|.-.++.--++|-+.+|+.++ .|+...+. .....+.....+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 356777777666654 223444445555667777777664 55655544 444555567788888887
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVV--WKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
|+..-+ ...-+.+|..+|+|.+|+.+-.++....+... -..|..-+...++.-+|-++..+.... |
T Consensus 962 Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~- 1029 (1265)
T KOG1920|consen 962 YERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P- 1029 (1265)
T ss_pred HHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H-
Confidence 776642 23456788899999999999998854444433 366777788888888888877765431 1
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
...+..|+++..|++|+.+-.
T Consensus 1030 -----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 -----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred -----HHHHHHHhhHhHHHHHHHHHH
Confidence 123334556666666665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.66 E-value=5.8 Score=38.96 Aligned_cols=68 Identities=12% Similarity=0.278 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 542 DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 542 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
....+|..++..+.+.|.++.|...+.++....+. .+.+...-+..+...|+.++|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 35668999999999999999999999999885522 466777778899999999999999998887333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.54 E-value=3.8 Score=38.73 Aligned_cols=127 Identities=11% Similarity=0.185 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh--cC----ChHHHHHHHhcCCC-------CChhhHHHHHHHHHhcCC-
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK--CG----SLGSARELFNFMED-------PDVVSWSSLIVGYAQFGC- 456 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~- 456 (634)
++....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++ ++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666666666665555443222222 11 24456777777763 344455555443 2222
Q ss_pred ---hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCC--HHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 457 ---GEEALKLFRRMRSSGVRPNH--VTLVGVLTACSHVGL--VEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 457 ---~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
.+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+. |+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 25567788888888877642 334444443333322 34777888888877 88887777765543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.28 Score=45.39 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=67.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGN 559 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~ 559 (634)
..-|.++|.+++|+..|.... ...| +..++..-..+|.+..++..|+.-.+.. ... .-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 556788899999999988877 4455 6777777778888888888777655544 211 123345555555556778
Q ss_pred HHHHHHHHHHHHhcCCCCchhH
Q 036704 560 VDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
..+|.+-++.++++.|.+...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 8888888888889999855433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.1 Score=37.17 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 513 ERRSCVVDLL---ARAGRVHEAEDFINQM-AFDDDIVVWK-SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 513 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
.+.+.|++.+ .+.++.+++..++..+ -..|...... .-...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444454433 4677888888888887 4445433222 233446688888888888888888888777777777777
Q ss_pred HHhcCC
Q 036704 588 YASSGK 593 (634)
Q Consensus 588 ~~~~g~ 593 (634)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 766665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=7.3 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+|..+++-+...|+.++|..+|+....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 445555555555555555555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.1 Score=36.45 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 524 RAGRVHEAEDFINQM-AFDDDIVVW-KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
..++++++..+++.+ -..|+.... ..-...+...|++++|.++++.+.+..|..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666776666666 233322211 1122335566777777777777666666555555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=2 Score=36.73 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDD-D----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+...+..+|++++|+.-++..-..| | ..+-..+.+.....|.+|+|...++...+..- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34577889999999999999773233 3 22334566677889999999999887654322 233456679999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036704 592 GKWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~g 608 (634)
|+-++|..-|++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.28 Score=30.70 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=16.1
Q ss_pred cHHHHHHHhhccCChhHHHHHHHHHHHcC
Q 036704 82 TYADLISACSSLRSLQLGRKVHDHILSSK 110 (634)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (634)
++..+..++...|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555666666655555553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.6 Score=36.17 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLL 522 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 522 (634)
+-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..+... +.|+- .....-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 34666677777777777766652 222 22344444455666666666665555542 33321 1222224566
Q ss_pred HhcCChHHHHHHHHhC-CCCCC
Q 036704 523 ARAGRVHEAEDFINQM-AFDDD 543 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~~ 543 (634)
.+...+++|++=|+++ ...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6666777777666666 33443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.87 E-value=7.1 Score=33.02 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHhcCCCCh
Q 036704 296 SLFSEMGDRELIPDGLTVRSLLCACTSPLSL 326 (634)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 326 (634)
++++.+.+.|++|+...+..++..+.+.|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 4444445555666666666666555555543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.34 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.++.++.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.37 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.42 Score=27.68 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+|..++.+|...|++++|+..+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.6 Score=35.02 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=63.2
Q ss_pred HhhcCChHHHHHHhhccc--CCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChh
Q 036704 22 FELCMLLDQAGEVVDSFL--RRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQ 97 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (634)
-.+.++.+++..+++.+. +|...... ++.+ +...|++.+|+++|+.+... .|....-..|+..|.....=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~--~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELD--LFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHH--HHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCCh
Confidence 344678888888888765 44333333 4444 77888888998888888754 344444455555555554444
Q ss_pred HHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHH
Q 036704 98 LGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
.-+..-+++.+.+..|+.. .++..+....+...|..
T Consensus 95 ~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 4555556666665333322 35555555555544444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.58 E-value=27 Score=37.31 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCC
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSP 323 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 323 (634)
+...| .+|-.+.++|++++|.++..+... +.......+...+..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 33444 566778899999999999865543 3455566777778888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.13 E-value=2 Score=39.73 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMS 296 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 296 (634)
.++..++..+...|+.+.+...++++...++ -+...|..+|.+|.+.|+...|+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-------------------------~~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-------------------------YDEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-------------------------cchHHHHHHHHHHHHcCCchHHHH
Confidence 4667889999999999999999999888776 488899999999999999999999
Q ss_pred HHHHHhh-----CCCCCCHhHHHHHHHH
Q 036704 297 LFSEMGD-----RELIPDGLTVRSLLCA 319 (634)
Q Consensus 297 ~~~~m~~-----~g~~p~~~~~~~ll~~ 319 (634)
.|+.+.+ .|+.|...+.......
T Consensus 209 ~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 209 AYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 9998865 4888887776655544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.54 Score=28.75 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.++.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888999999999988888764
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.08 E-value=3.4 Score=36.71 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+....+++...|++-++++.-..++...|.+..+|..-+.+.+..=+.++|..-|.++++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3444556667778888888888888888888888888888888877788888877777765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.96 E-value=5.4 Score=30.07 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+..+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+.....+....|..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 334444443 677999999999999999999999999999998877665556776653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.94 E-value=3.3 Score=35.75 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHH---
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQMA---FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKID--PTNSAALV--- 582 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~--- 582 (634)
..+..+.+.|.+.|+.++|.+.|.++. ..+ -...+..++......+++..+...+.++.... +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345567777777777777777777771 112 23456667777777778877777777766522 22221111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHH
Q 036704 583 -LLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 583 -~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1122345677888887776433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.80 E-value=16 Score=33.64 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++......|...|.+.+|.++-++++..+|-+.+.+..+...|...|+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566778999999999999999999999999999999999999999888888877765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.53 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 036704 579 AALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.56 E-value=11 Score=33.68 Aligned_cols=171 Identities=6% Similarity=-0.052 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
.|.....+|....++++|...+....+ .+...|. ..+-++.|.-+.++|... .--...|+--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 445555566666666666665544331 2211111 122244555555555542 1113445555666667
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--------AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
.|.++.|-..+++..+. .+.-++++|+++|++. ..+--...+......+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77776666666654431 1234455555555554 1111223445555667777788
Q ss_pred HHHHHHHHHHHh------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 561 DVGKRAAENILK------IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 561 ~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++|-..+.+-.. ..|..-..+...+-++....++..|...++.--+.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 777766665432 223334456677777778889999999987665544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.52 E-value=5 Score=34.59 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
.+..+..-|++.|+.+.|.+.|.++.+....|. ...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666544443 33455566666666777776666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=23 Score=35.03 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHH
Q 036704 91 SSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIE 167 (634)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 167 (634)
...|++-.|-+-+...+..- +-++.........+...|+++.+...+..... ....+-.++++...+.|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34566555544443333331 22222222233334566778877777655442 445566777777777788888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC
Q 036704 168 LYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH 215 (634)
Q Consensus 168 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 215 (634)
+-+.|....+. +...........-..|-++++...|+++...+.+.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77777765542 222222222222345566677777776665544433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=12 Score=31.47 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=73.8
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHhcccCC
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLI-----VGYAQFGCGEEALKLFRRMRSSGVRPNHV-TLVGV--LTACSHVGL 491 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~g~ 491 (634)
+.+.+..++|+.-|..+.+.+...|..|. ......|+...|...|+++-.-...|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667788888888888776666665543 23566788888888888876654334322 11122 223456777
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 492 VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
++......+-+... +.+-....-..|.-+-.+.|++..|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77777776666533 33333444456666667888888888888877
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.2 Score=37.60 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 560 VDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456666677777788888888888888877654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.98 Score=27.54 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888775
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.88 E-value=21 Score=33.63 Aligned_cols=98 Identities=7% Similarity=-0.038 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHcCCChh---HHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh-----
Q 036704 276 ASWNTIIAGVASCSNAN---EAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP----- 346 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 346 (634)
.+...++.+|...+..+ +|.++++.+... -|+ +..+..-+..+.+.++.+.+.+++..|+..-..++..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45677888888887754 466666666544 233 3445455666666888888888888887754322221
Q ss_pred -HHhHHHhcCHhHHHHHHHHHHHCCCCCCH
Q 036704 347 -VCNAILQHQAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 347 -~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 375 (634)
.+..+.......+...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 11222233445555555555544444433
|
It is also involved in sporulation []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.67 E-value=17 Score=32.36 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=27.5
Q ss_pred HhcCChHHHHHHHHhC---CCCCCHHHH---HHHHH--HH-HhcCCHHHHHHHHHHHHhcCCC
Q 036704 523 ARAGRVHEAEDFINQM---AFDDDIVVW---KSLLA--SC-KTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~---~~~~~~~~~---~~l~~--~~-~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...+++.+|+++|++. ....+..-| ..++. .| .-..|.-.+...+++..+.+|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3456677777777766 111111111 11111 12 2235666667777777777776
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.1 Score=25.90 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998876
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.19 E-value=3.1 Score=30.92 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
++.+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+......+...|..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 344444444 67799999999999999999999999999988866654555566554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.11 E-value=2.3 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+-.+.-++.+.|++++|.+..+.+++..|++..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34566778899999999999999999999988765543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.92 E-value=25 Score=33.36 Aligned_cols=146 Identities=10% Similarity=0.161 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--ccC----CHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCh
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACS--HVG----LVEEGLQLYRIMQNEYGIIPT--RERRSCVVDLLARAGRV 528 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g----~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 528 (634)
+++.+.+++.|.+.|++-+..+|.+...... ... ...+|..+|+.|++++.+-.. -..+..++. ...++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA--~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA--MTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh--cccccH
Confidence 3456778888999998877766654322222 222 356788899999987655433 333444432 244444
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHh-cCC--HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHH
Q 036704 529 HE----AEDFINQM---AFDD-DIVVWKSLLASCKT-HGN--VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 529 ~~----A~~~~~~~---~~~~-~~~~~~~l~~~~~~-~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~ 596 (634)
++ ++.+|+.+ ++.. +..-+.+-+-++.. ..+ ..++.++++.+.+..-+ ....|..++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 33 44444444 4443 33333333333322 222 34677777777764433 23335555433323333324
Q ss_pred HHHHHHHH
Q 036704 597 VARLMGSM 604 (634)
Q Consensus 597 A~~~~~~~ 604 (634)
..+-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.91 E-value=2.3 Score=37.03 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLC 585 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~ 585 (634)
+.+.-+..+.+.+.+.+|+...+.- +.+| |...-..+++.++-.|++++|..-++-+-++.|.... .|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 3445567778888999999887755 6666 5667778888899999999999999998888887543 444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=18 Score=31.75 Aligned_cols=179 Identities=11% Similarity=-0.001 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-hHHHHHHH--HHhcCChHHHHHHH
Q 036704 388 MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV-SWSSLIVG--YAQFGCGEEALKLF 464 (634)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~a~~~~ 464 (634)
.|-+..|.-=|.+.....+. -+.+||-+.-.+...|+++.|.+.|+...+.|+. -|..+=++ +--.|++..|.+=+
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444433322 3567888888888999999999999998875543 33333222 33458888888877
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCCCCC
Q 036704 465 RRMRSSGVR-PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC-VVDLLARAGRVHEAEDFINQMAFDD 542 (634)
Q Consensus 465 ~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 542 (634)
...-+.+.. |-...|..+. ...-++.+|..-+.+-.+ +. |..-|.. ++..|.-.=..+.+.+-...-....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 776665322 2222233322 233467777654433222 33 3333332 3333332222233332222221111
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 543 ------DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 543 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
-..++--+.+-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 13477788888999999999999999988754
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.1 Score=27.91 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..++.+|.+.|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888888888888888888888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.78 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999864
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.5 Score=37.39 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDDDI-VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
..++..|+..|.+. .+.|+. ..|+.=+..+.+..+++.+..--.+++++.|+.......++..+.....+.+|...+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34555566555554 455554 3445555556666777777777777777777777777777777777777777777766
Q ss_pred HH
Q 036704 603 SM 604 (634)
Q Consensus 603 ~~ 604 (634)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 66
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.27 E-value=2.2 Score=35.36 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 036704 189 RACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFS 240 (634)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 240 (634)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444444433444444555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.12 E-value=45 Score=35.48 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCC----CChhhHHHHHHHHHc
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMES----PNLASWNTIIAGVAS 287 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~ 287 (634)
.+...+|..+...|++++|-...-.|...+..-|-..+..+...+.-..++.-+|. .+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 34566778888888899988888888888877777777777777777777777774 245678877777776
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.70 E-value=2.7 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCNIYASSGK 593 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 593 (634)
|......+...+...|++++|++.+-.+++.+|. +..+-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555566666666666666666666655443 34555555555555554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.60 E-value=5.8 Score=35.44 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHhc--CCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 544 IVVWKSLLASCKTHGNVD-------VGKRAAENILKI--DPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
...+..+.+.|...|+.+ .|.+.|+++.+. .|. ...+...++.+..+.|++++|.+.|.++...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 346666777777777754 444455555442 222 3467778888889999999999999999876544
Q ss_pred CC
Q 036704 611 KV 612 (634)
Q Consensus 611 ~~ 612 (634)
..
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 33
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.12 E-value=20 Score=30.39 Aligned_cols=132 Identities=10% Similarity=0.059 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--ChHHHHHHHhcCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG--SLGSARELFNFME 437 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 437 (634)
.+.++.+.+.+++|+...+..++..+.+.|.+....+ +...++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666667777777778888888877777654433 334444444443333322221111 1233444444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 438 DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23445566677777777777776664322 11122334555555555544444444333
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.11 E-value=36 Score=33.41 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=120.3
Q ss_pred cCChHHHHHHHhcCCC----CChhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCCHH
Q 036704 423 CGSLGSARELFNFMED----PDVVSWSSLIVG-YAQFGCGEEALKLFRRMRSSGVRPN----HVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~ 493 (634)
.|+..+|.+.+..+.. +....|-.|+.+ .....++..|+++|+..+-. -|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999998873 455567777766 44567899999999987654 342 345555666678899999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRS-CVVDLLARAG---RVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 569 (634)
++..+-......+...|-..-|. .++..+.+.+ ..+.-.+++..|.-.--...|..+.+.-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99988888887766666444333 2333343333 3444445555554333456888899999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHhC
Q 036704 570 ILKIDPTNSAALVLLCNIY-----ASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 570 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 607 (634)
+..+... ...-...+..| .-..++++|.+.++.+-..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9886533 22222222233 2345577777766655443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.04 E-value=4.3 Score=37.64 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.+-.+|.+.++++.|....+.++...|+++.-+...+-+|.+.|-+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.00 E-value=5.2 Score=34.74 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHH
Q 036704 528 VHEAEDFINQMAFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 597 (634)
-++|.+.|-.+...| ++.....++. |....|.++++.++-++++..+. |+.++..|+.++.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355666666662222 3333334443 33456777888888877774322 577788888888888887776
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.86 Score=37.81 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhH
Q 036704 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENA 164 (634)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 164 (634)
.+++.+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888776566678888888888888777888887774332 333455666666666666
Q ss_pred HHHHHHHH
Q 036704 165 AIELYVQM 172 (634)
Q Consensus 165 a~~~~~~m 172 (634)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.84 E-value=6.9 Score=36.28 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=74.8
Q ss_pred HcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-CCc-----cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 036704 108 SSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-RNV-----VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ 181 (634)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (634)
..|.+.+..+...++..-....+++.+...+-++.. |+. .+-.+.++.+.+ -++++++.++..=++.|+.||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 345556666666667666667788888877766553 211 122233444433 4677999999988999999999
Q ss_pred hhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 182 FTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
.+++.+|+.+.+.++...|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=3 Score=38.94 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
.+.|.++|.+++|+..|.+-... .| |++++..-..+|.+...+..|..-....... -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 45699999999999999988775 56 8889988889999988888777766655532 224556666554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHH
Q 036704 527 -------RVHEAEDFINQM-AFDDDIV 545 (634)
Q Consensus 527 -------~~~~A~~~~~~~-~~~~~~~ 545 (634)
+..+|.+-++.. ...|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 555555555554 6667643
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=13 Score=32.67 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
..+.+.+...+++...+.-.+. -+.+...-..++..|+-.|+|++|..-++-
T Consensus 9 seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3344444444444444443321 122333344444555555555555444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.7 Score=24.00 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444445555555555444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.15 E-value=19 Score=29.56 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=26.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC
Q 036704 92 SLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ 143 (634)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 143 (634)
...+++.+..+++.|.-.. |-....-..-...+...|+|.+|.++|+++.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3556666666666665442 11222222233345566666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.97 E-value=13 Score=34.65 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=75.3
Q ss_pred CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhC---CCCCh--hHHhHHH-hcCHhHHHHHHHHHHHCCCCCCHhH
Q 036704 304 RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKG---FYSNV--PVCNAIL-QHQAGELFRLFSLMLASQTKPDHIT 377 (634)
Q Consensus 304 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~ll-~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (634)
.|......+...++..-.....++.+...+-.+.... ..++. .++-.++ +-++.+++.++..=.+-|+-||..+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 4555566667777766666777787777665554322 22222 2333333 4488999999999999999999999
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhC
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTG 405 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 405 (634)
++.+|..+.+.+++.+|.++...|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.47 E-value=66 Score=34.96 Aligned_cols=51 Identities=25% Similarity=0.134 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 453 QFGCGEEALKLFRRMRSSG----VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..|+++.|.++.+.....= ..+....+..+..+..-.|++++|..+.....
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 3456666666655544331 12233444455555555666666666655544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.44 E-value=0.95 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=17.3
Q ss_pred HHHHHcCCCCCcchhhHHHHHHHccCChHHHH
Q 036704 104 DHILSSKCQPDAVLHNHILNMYGKCGSLEDAR 135 (634)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 135 (634)
++.++.. |-++..|..+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 445566666666666666666654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.42 E-value=12 Score=28.16 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 036704 95 SLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQ 174 (634)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 174 (634)
..++|..+-+.+...+. ....+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.++...-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35667777776665442 133333344556788999999999999988899888877654 366777777777777777
Q ss_pred CCCCCChhhHH
Q 036704 175 SGLMPDQFTFG 185 (634)
Q Consensus 175 ~g~~p~~~~~~ 185 (634)
+| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 76 35555553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.27 E-value=10 Score=34.99 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=83.3
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhc--cCChhHHHHHHHHHHHc-CCCCCcchhhHHHHHHHccCChHH
Q 036704 57 QNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSS--LRSLQLGRKVHDHILSS-KCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 57 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
+.-..+|+.+|+.......+-.|..+...+++.... ........++.+-+... +-.++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 445678888888544322466788888888877765 22344455555555543 347788888899999999999999
Q ss_pred HHHHhccCC-----CCCccchHHHHHHHHhCCChhHHHHHHHH
Q 036704 134 ARMVFDEMP-----QRNVVSWTAMIAGCSQNGQENAAIELYVQ 171 (634)
Q Consensus 134 A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 171 (634)
-.++++... ..|...|..+|......|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999998754 35778999999999999998766655543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.54 E-value=17 Score=27.51 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 448 IVGYAQFGCGE--EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 448 ~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
-..|....+.+ +..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+-+ +....|..++.
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 33444433333 5666677777778889999999999999999999999999998887533 33336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.09 E-value=29 Score=35.62 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 036704 422 KCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRI 501 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 501 (634)
..|+++.|..++..+.++ .-+.++.-+.+.|-.++|+++ .+|+.--. ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 345565555555554422 222333344445555555443 23322211 112345666666655444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 502 MQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.. +..-|..|.++....|++..|.+.|.+.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 32 2334666666666666666666666655
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.74 E-value=1.1 Score=24.10 Aligned_cols=21 Identities=14% Similarity=-0.084 Sum_probs=14.2
Q ss_pred cchhhHHhhcCChHHHHHHhh
Q 036704 16 CEYWDAFELCMLLDQAGEVVD 36 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~ 36 (634)
..++.++...|++++|.+.++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 456667777777777777654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.63 E-value=69 Score=33.79 Aligned_cols=15 Identities=20% Similarity=0.045 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhC
Q 036704 391 LEMGTQLHCYIMKTG 405 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~ 405 (634)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 455666666666655
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.34 E-value=43 Score=31.19 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=77.1
Q ss_pred HhHHHh-c-CHhHHHHHHHHHHH-CCCCCCHhHHHHHHHHhhc-cc-cHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHh
Q 036704 348 CNAILQ-H-QAGELFRLFSLMLA-SQTKPDHITFNDVMGACAA-MA-SLEMGTQLHCYIM-KTGLALDVFVMNGLMDMYV 421 (634)
Q Consensus 348 ~~~ll~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 421 (634)
|..+++ + ...+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+. ..+-.++..+...++..++
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 444442 2 66777777774433 3355667777777776655 22 3333444444444 3345667777788888888
Q ss_pred hcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 422 KCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
..+++..-.++++... ..|...|..++......||..-...+.++
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888888888888654 35677888888888888886655544443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.88 E-value=12 Score=31.87 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=33.1
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 539 AFDDD-IVVWKSLLASCKTHG-----------NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 539 ~~~~~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+.|+ ..++..+..+|...+ -+++|.+.|+++...+|.+......|-.+ .+|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 44454 345555555554333 25566666777777888776555555322 245555555555
Q ss_pred CCC
Q 036704 607 RGV 609 (634)
Q Consensus 607 ~g~ 609 (634)
++.
T Consensus 136 ~~~ 138 (186)
T PF06552_consen 136 QGL 138 (186)
T ss_dssp SSS
T ss_pred HHh
Confidence 443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.69 E-value=6.2 Score=39.92 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=70.2
Q ss_pred ccCCHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 488 HVGLVEEGLQLYRIMQNEYGIIP--TRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
..|+...|.+.+..+.. ..| .......|...+.+.|....|-.++.+. . ....+.++..+.+++....+.++|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35788888888777663 333 2233445667777777777888877665 2 233566777888888888899999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
++.++.+++..|+++..-+.|..+-|
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999998888887777655544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.68 E-value=68 Score=33.08 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHH-ccCChHHHHHH
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYG-KCGSLEDARMV 137 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~ 137 (634)
..+.+...+..+... +|.----|......=.+.|..+.+..+|++-+. +++.+...|...+..+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 345555566666643 222222334444445667778888888888765 45667777766665554 34666666777
Q ss_pred hccCCC------CCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 036704 138 FDEMPQ------RNVVSWTAMIAGCSQNGQENAAIELYVQMLQ 174 (634)
Q Consensus 138 ~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 174 (634)
|+.... .....|...|.--...+++.....++++..+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 766542 3455677777777778888888888888876
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.98 E-value=66 Score=32.50 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=121.2
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
..|.....+++..+.....+.-++.+..+|...|- +...+..++..|... .-++-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 55667777888888888888888888888887663 566777788888877 56677778886654 3444444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPN------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.-|-+ ++.+.+..+|.++...- -|. ...|.-+... -..+.+....+..++.+..|...-...+..+..-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555 77888888888877653 221 1234444432 13577788888888888777777777777788888
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQM--AFDDDIVVWKSLLASC 554 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 554 (634)
....++.+|++++..+ -...|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 8999999999999876 2223444444555444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.62 E-value=23 Score=28.53 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 509 IPTRERRSCVVDLLARAGR---VHEAEDFINQM-A-FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
.++..+--.+..++.+..+ ..+.+.+++++ + ..| .......|.-++.+.++++.++++.+..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5556666667777776654 45566677776 3 344 234556677778899999999999999988888877543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.56 E-value=22 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
|.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+-+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445666677777778889999999999999999999999999988875423 2444565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.36 E-value=12 Score=38.11 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHhcc
Q 036704 225 MYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~ 242 (634)
+|...|+++++.+++.+-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 444556666666665543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=12 Score=34.65 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+.+-.+|.+.++++.|+.+.+.+ ...| ++.-+..-+-.|.+.|.+..|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34667888999999999999988 5555 56678878888999999999999999999999998865443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 6e-15
Identities = 93/624 (14%), Positives = 173/624 (27%), Gaps = 224/624 (35%)
Query: 26 MLLDQAGEVVDSFLRRFDDI---WDFDLFSSLCKQ-----NLYNEALVAFDFLQNNTN-- 75
LL + E+V F+ I + + +Q +Y E D L N+
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVF 126
Query: 76 ---FRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG--- 129
R Y L A L L+ + V ++ + G G
Sbjct: 127 AKYNVSRLQPYLKLRQA---LLELRPAKNV-------------LID----GVLG-SGKTW 165
Query: 130 ----SLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS---GLMPDQF 182
+ V +M + W + N+ E ++MLQ + P+
Sbjct: 166 VALDVCLSYK-VQCKMD--FKIFWLNL-------KNCNSP-ETVLEMLQKLLYQIDPNWT 214
Query: 183 TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQ---NALIAMYTKFDRILD----- 234
+ +L H I++E L S+ N L+ +L
Sbjct: 215 SRSDHSSNI----------KLRIHSIQAELRRLLKSKPYENCLL--------VLLNVQNA 256
Query: 235 -AWNVFSSIARKDI-------TSWGSMIDGFS-------KLDFARTVFNEMESPNL-ASW 278
AWN F ++ T + + D S LD E +L +
Sbjct: 257 KAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 279 -NTIIAGVAS--CSNANEAMSLFSEMGDRELIPDGL------------TVRSLLCACTSP 323
+ + + +S+ +E I DGL + +++ + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 324 LS------LYQGMQIHSYIIKKGFYSNVPVCNAIL------------QHQAGELFRLFSL 365
L ++ + + F + + +L +L +
Sbjct: 366 LEPAEYRKMFDRLSV--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YS 415
Query: 366 MLASQTKPDHITFNDVMGACAAMASLEMGTQLH-----CYIMKTGLALDVFVMNGLMDMY 420
++ Q K I+ + LE LH Y + D + L D Y
Sbjct: 416 LVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQY 472
Query: 421 VKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG-EEALKLFRRM-----------R 468
++ +G+ E + LFR + R
Sbjct: 473 F-----------YSH-------------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQ---LYR--IMQNEYGIIPTRERRSC-VVDLL 522
TA + G + LQ Y+ I N+ P ER ++D L
Sbjct: 509 HDS------------TAWNASGSILNTLQQLKFYKPYICDND----PKYERLVNAILDFL 552
Query: 523 ARAGRV---HEAEDFINQMAFDDD 543
+ + D + ++A +
Sbjct: 553 PKIEENLICSKYTDLL-RIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 40/135 (29%)
Query: 10 HLPRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDF 69
L W + W + D+ +++S L + + + ++ + L F
Sbjct: 340 GLATW--DNWKH----VNCDKLTTIIESSLNVLEP----AEY-----RKMF-DRLSVF-- 381
Query: 70 LQNNTNFRIRPSTYA------------DLISACSSLRSLQLGRK-----VHDHILSSKCQ 112
+ + I + +++ ++ K + L K +
Sbjct: 382 -PPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 113 PD--AVLHNHILNMY 125
+ LH I++ Y
Sbjct: 439 LENEYALHRSIVDHY 453
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 55/390 (14%), Positives = 93/390 (23%), Gaps = 166/390 (42%)
Query: 7 FICHLPR---W-----CCEYWDAFE----LCMLLDQAG--------------EVVDSFLR 40
C + W C E L +D + + LR
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 41 RF-------------DDIWD---FDLFSSLCKQNLYNEALV------AFDFLQNNTNFRI 78
R ++ + ++ F+ CK L+ DFL T I
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK------ILLTTRFKQVTDFLSAATTTHI 289
Query: 79 R---------PSTYADLISACSSLRSLQL---------------GRKVHDHILSSKCQPD 114
P L+ R L + D + D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL----ATWD 345
Query: 115 AVLH------NHILNMYGKCGSLE-----DARMVFDEM----------PQRNVVSWTAMI 153
H I+ SL + R +FD + + W +I
Sbjct: 346 NWKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 154 AGCSQNGQENAAIELYVQMLQSGLM---PDQFTFG------SIIRACSGLCCVGLGRQLH 204
+ ++ + L+ P + T + LH
Sbjct: 401 KSDVM--------VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE------YALH 446
Query: 205 AHVIKS----------------------EH-GSHLISQNALIAMYTKFDRI-LDAWNVFS 240
++ H G HL T F + LD F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLD----FR 501
Query: 241 SIARK---DITSW---GSMIDGFSKLDFAR 264
+ +K D T+W GS+++ +L F +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.7 bits (166), Expect = 4e-12
Identities = 18/187 (9%), Positives = 56/187 (29%), Gaps = 7/187 (3%)
Query: 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYV 421
L + P ++ SL++ + L+ + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 422 KCGSLGSARELFNFMED-------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474
L A L + ++++++G+A+ G +E + + ++ +G+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534
+ ++ L ++ ++ G+ + ++ RA +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 535 INQMAFD 541
+
Sbjct: 259 KPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 31 AGEVVDSFLRRFDDIWDFDLFSSL--CKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88
AG + D + + W+ L L L + A + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 89 ACSSL----RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR 144
C + L H + ++N ++ + + G+ ++ V +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQR-QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 145 ----NVVSWTAMIAGCSQNGQENAAIELYV-QMLQSGLMPDQFTFGSIIRAC 191
+++S+ A + + Q+ IE + QM Q GL ++
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 4e-04
Identities = 16/170 (9%), Positives = 44/170 (25%), Gaps = 7/170 (4%)
Query: 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPS--TYADLISACSSLRSLQLGRKVHDHIL 107
F + A R + Y ++ + + + V +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 108 SSKCQPDAVLHNHILNMYGKCG-SLEDARMVFDEMPQRNV----VSWTAMIAGCSQNGQE 162
+ PD + + L G+ ++M Q + + +++ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 163 NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEH 212
A ++ +P ++R +LH + +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 27/212 (12%), Positives = 57/212 (26%), Gaps = 32/212 (15%)
Query: 420 YVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTL 479
Y+ G + P++ + A + + R S V + T
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 480 VGVL-TACSHVGLVEEGLQLYRIMQN-----EYGIIPTRERR------------------ 515
+ + + + + L+ + I + R
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163
Query: 516 ------SCVVDLLARAGRVHEAEDFINQMA--FDDDIVVWKSLLASCKTHGNVDVGKRAA 567
+ V L A ++ +A +MA +++ A G + +
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223
Query: 568 ENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599
+ L D + L+ L + GK EV
Sbjct: 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.41 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.14 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.49 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.36 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.1 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.07 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.7 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.52 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.89 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.41 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.29 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.61 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.56 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.48 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.07 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.03 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.21 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 86.81 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.31 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.64 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.45 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.22 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.53 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.39 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.75 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.37 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 82.13 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.11 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.67 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.66 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=352.47 Aligned_cols=499 Identities=9% Similarity=-0.074 Sum_probs=334.8
Q ss_pred HhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRK 101 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (634)
+...|....+...++..+.+++..|+ .++..+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLR-LWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHH-HHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 44567777888888888777777887 899999999999999999999985 35677889999999999999999999
Q ss_pred HHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCC-------------------CccchHHHHHHHHhCCCh
Q 036704 102 VHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR-------------------NVVSWTAMIAGCSQNGQE 162 (634)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~ 162 (634)
+|+.+... ++++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 788899999999999999999999999965433 367899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhcCCCchhHh--HH-HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 163 NAAIELYVQMLQSGLMPD-QFTFGSIIRACSGLCCVGLGR--QL-HAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
++|.++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 44 344544544433332222111 11 34444444555566777778888888999999999
Q ss_pred HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 036704 239 FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLC 318 (634)
Q Consensus 239 ~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 318 (634)
|+++.+. + ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.
T Consensus 295 ~~~~~~~-~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 347 (597)
T 2xpi_A 295 LSSINGL-E-------------------------KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLA 347 (597)
T ss_dssp HHTSTTG-G-------------------------GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHH
T ss_pred HHHhhcC-C-------------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHH
Confidence 8887664 1 578889999999999999999999999987654 225556666666
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHH
Q 036704 319 ACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLH 398 (634)
Q Consensus 319 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 398 (634)
++.+.|+.++|.++++.+.+.. +.+..++..+...|.+.|++++|.++|
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-------------------------------PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-------------------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6666666666655555554331 344556666666677777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 399 CYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
+++.+.... +..+|+.++.+|.+.|++++|.++|+++. ..+..+|..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 397 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 666655432 45566666666666666666666666553 2345566666666666666666666666666543 234
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIPT--RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWK 548 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 548 (634)
..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 5666666666666666666666666665432 33454 456666666666666666666666665 2223 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
.++.+|...|++++|.+.++++++.+|+++.++..++.+|
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 6666666666666666666666666666666666665554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=335.59 Aligned_cols=484 Identities=7% Similarity=-0.026 Sum_probs=375.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHH
Q 036704 56 KQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDAR 135 (634)
Q Consensus 56 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 135 (634)
..+....+...+..+ ..++...|+.++..+.+.|+++.|..+|+++.+. .|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD-----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccc-----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344444444444422 2256778999999999999999999999999854 567788899999999999999999
Q ss_pred HHhccCC--CCCccchHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhhcCCCch
Q 036704 136 MVFDEMP--QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS---------------GLMPDQFTFGSIIRACSGLCCVG 198 (634)
Q Consensus 136 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~ 198 (634)
.+|+.+. .++..+++.++.+|.+.|++++|.++|+++... |.+++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9999984 578889999999999999999999999853221 11223455555555555555555
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH---HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCCh
Q 036704 199 LGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV---FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNL 275 (634)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 275 (634)
+|...|+++.+.+.. +...+..+...+...+..+.+... +..+...+ +.+..
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~ 272 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED------------------------AAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG------------------------HHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccch------------------------HHHHH
Confidence 555555555554311 223333333322222111111000 01100000 01234
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQ 355 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (634)
.+|+.++..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|.++++.+.+.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 335 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------------- 335 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---------------
Confidence 56777788899999999999999998765 5889999999999999998888888877776553
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
+.+..++..++.++.+.|++++|..+++++.+... .+..+++.++.+|.+.|++++|.++|++
T Consensus 336 ----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 336 ----------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp ----------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44667899999999999999999999999997654 4788999999999999999999999998
Q ss_pred CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 436 ME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 436 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
+. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDP 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 75 3457799999999999999999999999999875 457899999999999999999999999999864 34478
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-------AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.++..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|++.++++++..|+++.+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999999999999998 44676 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++.+|.+.|++++|.+.++++.+..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-26 Score=228.26 Aligned_cols=377 Identities=12% Similarity=0.045 Sum_probs=293.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 153 IAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344566777777777777776542 2233444555556667777777777777766643 34566777777788888888
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH-h
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG-L 311 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 311 (634)
++|...|+++.+.++ .+..+|..+..++.+.|++++|.+.|.++.+. .|+. .
T Consensus 84 ~~A~~~~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 136 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYC 136 (388)
T ss_dssp HHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHHHHHHcCc-------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence 888887777654332 34556777888888888888888888887664 3443 3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL 391 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 391 (634)
.+..+...+...|++++|.+.+..+.+.. +.+..++..+...+...|++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-------------------------------PNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 45556666677777777777666665542 34567788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++|...++++.+.++. +...+..+...+...|++++|...+++..+ | +..++..+..++...|++++|...++++.
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999987654 677888889999999999999999987652 3 46788899999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 036704 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVV 546 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 546 (634)
+.+ +.+..++..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..+
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 874 235778999999999999999999999999864 4557788999999999999999999999998 4445 5788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
+..++..+...|++++|+..++++++..|+++.++..++.++.+.|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=250.00 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=182.9
Q ss_pred HHHHHHHhhhcCCCCCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccC
Q 036704 63 ALVAFDFLQNNTNFRIRPS-TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141 (634)
Q Consensus 63 A~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 141 (634)
+..+.+.+.+. +....+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 34444555554 5555544 58889999999999999999999999999999999999999999887654332
Q ss_pred CCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHH
Q 036704 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNA 221 (634)
Q Consensus 142 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (634)
.+.++++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 222 LIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
+|.+|++.|++++|.++|++|.+.+.. ||..+|++||.+|++.|++++|.++|++|
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~------------------------Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVV------------------------PEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCC------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 999999999999999999999888764 99999999999999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhcCC
Q 036704 302 GDRELIPDGLTVRSLLCACTSP 323 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~ 323 (634)
++.|..|+..||+.++..++..
T Consensus 202 r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 202 RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=239.31 Aligned_cols=202 Identities=11% Similarity=0.176 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhCCCCCCH-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCC
Q 036704 292 NEAMSLFSEMGDRELIPDG-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQ 370 (634)
Q Consensus 292 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~ 370 (634)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------------------------------ 56 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------------------------------ 56 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------------------------------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------------------------
Confidence 3456667778878776654 458889999999998777766666665555
Q ss_pred CCCCHhHHHHHHHHhhccc---------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC----
Q 036704 371 TKPDHITFNDVMGACAAMA---------SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---- 437 (634)
Q Consensus 371 ~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 437 (634)
+.||..||+++|.+|++.+ .++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 57 v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 57 VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 5666666666666665433 356666677777766777777777777777777777777777776664
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH
Q 036704 438 DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 517 (634)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+. +..|+..||+.
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~ 215 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDM 215 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHH
Confidence 36666777777777777777777777777777777777777777777777777777777777777665 77777777777
Q ss_pred HHHHHHh
Q 036704 518 VVDLLAR 524 (634)
Q Consensus 518 l~~~~~~ 524 (634)
++..|..
T Consensus 216 l~~~F~s 222 (501)
T 4g26_A 216 IEEWFKS 222 (501)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 6666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-25 Score=220.84 Aligned_cols=357 Identities=13% Similarity=0.035 Sum_probs=304.7
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHH
Q 036704 188 IRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVF 267 (634)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~ 267 (634)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+.++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-------------------- 64 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-------------------- 64 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------
Confidence 345567899999999999888764 33456677788889999999999999887655443
Q ss_pred hcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh
Q 036704 268 NEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP 346 (634)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 346 (634)
.+..+|..+...+.+.|++++|.+.|+++.+. .|+ ..++..+..++...|++++|.+.+..+.+..
T Consensus 65 -----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 131 (388)
T 1w3b_A 65 -----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------ 131 (388)
T ss_dssp -----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------
T ss_pred -----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 57788999999999999999999999998764 454 4568888888999998888888877776642
Q ss_pred HHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCh
Q 036704 347 VCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSL 426 (634)
Q Consensus 347 ~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (634)
+.+...+..+...+...|++++|...++++.+..+. +..++..+...+.+.|++
T Consensus 132 -------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 132 -------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp -------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCH
T ss_pred -------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 233456777788889999999999999999987654 678899999999999999
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 427 GSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 427 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++++.
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 345678889999999999999999999998863 2257889999999999999999999999998
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 504 NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+. .+.+..++..+..++.+.|++++|.+.++++ ..+++..++..++..+...|++++|+..++++++..|+++.++
T Consensus 265 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 265 EL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 63 2335778899999999999999999999998 3345788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++.+|.+.|++++|.+.++++.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-23 Score=212.84 Aligned_cols=430 Identities=10% Similarity=-0.039 Sum_probs=282.6
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036704 149 WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK 228 (634)
Q Consensus 149 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 228 (634)
|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445556666777777777777776643 566667777777777777777777777776654 2344566667777777
Q ss_pred cCChhHHHHHHhccCCCCcch---HHHHHHHhhccchHHHHHhcC---C----CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 229 FDRILDAWNVFSSIARKDITS---WGSMIDGFSKLDFARTVFNEM---E----SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~a~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.|++++|...|+++...++.. ....+..+.+........+.+ . .|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 777777777776654433211 111111111100000000000 0 011111100000001111111111111
Q ss_pred HHHhhCCCC--------CC-HhHHHHHHHHhc---CCCChHHHHHHHHHHHH-----hCCCCChhHHhHHHhcCHhHHHH
Q 036704 299 SEMGDRELI--------PD-GLTVRSLLCACT---SPLSLYQGMQIHSYIIK-----KGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 299 ~~m~~~g~~--------p~-~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
..+...... |+ ...+......+. +.|+++.|...++.+.+ ....|+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------- 232 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL------------- 232 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH-------------
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc-------------
Confidence 111111100 11 222222222222 36666666666655554 2111110000
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--- 438 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 438 (634)
.+.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+.+
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 301 (514)
T 2gw1_A 233 ---------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301 (514)
T ss_dssp ---------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT
T ss_pred ---------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc
Confidence 0223456778888999999999999999999988765 78888899999999999999999998753
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 378 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFF 378 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHH
Confidence 456688889999999999999999999999874 335778889999999999999999999999864 33456788889
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKT---HGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
...+.+.|++++|.+.++++ +..++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999987 22222 4488899999999 9999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 588 YASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.+.|++++|.+.++++.+.+
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999998754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=214.56 Aligned_cols=283 Identities=10% Similarity=-0.063 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHh---cCChhHHHHHHhccCC-----C--CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHH
Q 036704 216 LISQNALIAMYTK---FDRILDAWNVFSSIAR-----K--DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGV 285 (634)
Q Consensus 216 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 285 (634)
...+..+...+.. .|++++|...|+++.+ . ++..-. ....+..+|..+...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK------------------LKEKLAISLEHTGIFK 247 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc------------------cChHHHHHHHHHHHHH
Confidence 3344444444444 7888888888877544 1 110000 0002456788888899
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHH
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSL 365 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~ 365 (634)
...|++++|...++++.+.. |+...+..+...+...|+++.|...++.+.+
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------- 298 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALK--------------------------- 298 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT---------------------------
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh---------------------------
Confidence 99999999999999887653 3355555555556666655555555544433
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChh
Q 036704 366 MLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVV 442 (634)
Q Consensus 366 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 442 (634)
.... +...+..+...+...|++++|...++.+. ..+..
T Consensus 299 --------------------------------------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 299 --------------------------------------LDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp --------------------------------------TCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred --------------------------------------cCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH
Confidence 2211 33445555555555666666666555543 23345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 518 (634)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.....-.++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 66667777777777888888887777653 235677778888888888888888888888764332333 3377888
Q ss_pred HHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 519 VDLLAR---AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 519 ~~~~~~---~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...+.. .|++++|.+.++++ ...| +..++..++..+...|++++|...++++++..|.++..+..+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 888888 89999999999887 3333 6778889999999999999999999999999999888777663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=203.61 Aligned_cols=436 Identities=11% Similarity=-0.009 Sum_probs=243.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC 128 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (634)
.....+.+.|++++|+..|+.+.+. .+.++..+..+..++...|+++.|.+.++++.+.+ +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 4455678888888888888888875 34566778888888888888888888888888775 55667777788888888
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHH
Q 036704 129 GSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVI 208 (634)
Q Consensus 129 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (634)
|++++|...|+.+. .++...+..+..+...+....|...++++.... |+..
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~-------------------------- 157 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG-------------------------- 157 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----------------------------------
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc--------------------------
Confidence 88888888776332 222222223334444455566777776665421 1000
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc-
Q 036704 209 KSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS- 287 (634)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~- 287 (634)
....|+ ...+..+....+.+.+...+......+.. .......+...+..
T Consensus 158 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 158 -SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTA-------------------------YALLSDALQRLYSAT 207 (537)
T ss_dssp --CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSS-------------------------HHHHHHHHHHHHTCS
T ss_pred -ccccch----HhHHHHHHHhcChHHHHHHHhhccccccH-------------------------HHHHHHHHHHHHHhh
Confidence 001111 11223344445555555554444333221 01122222222222
Q ss_pred -------CCChhHHHHHHHHHhhCCCCCC-HhH-------HHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 288 -------CSNANEAMSLFSEMGDRELIPD-GLT-------VRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 288 -------~g~~~~A~~~~~~m~~~g~~p~-~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
.|++++|..+++++.+. .|+ ... +..+...+...|
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~---------------------------- 257 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN---------------------------- 257 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc----------------------------
Confidence 24678888888887654 233 221 222222222222
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
++++|...+++.... .|+...+..+...+...|+++.|...++++.+.... +..++..+...+...|++++|...
T Consensus 258 --~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 258 --NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp --CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 444444555555443 344566666666777777777777777776665543 455666666666677777777776
Q ss_pred HhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 433 FNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 433 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
++.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 666542 334566666666667777777777776666653 2235566666666666677777777766665432111
Q ss_pred CC----hhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 510 PT----RERRSCVVDLLARA----------GRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 510 ~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
++ ...+..+..++.+. |++++|.+.++++ ... .+...+..++..|...|++++|.+.++++++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 11233334555555 6666776666665 222 24556666666666667777777777777666
Q ss_pred CCCCchhHH
Q 036704 574 DPTNSAALV 582 (634)
Q Consensus 574 ~p~~~~~~~ 582 (634)
.|.+.....
T Consensus 492 ~~~~~~~~~ 500 (537)
T 3fp2_A 492 ARTMDEKLQ 500 (537)
T ss_dssp C--CHHHHH
T ss_pred CCCcHHHHH
Confidence 666555433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=198.46 Aligned_cols=338 Identities=10% Similarity=0.035 Sum_probs=246.4
Q ss_pred CChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhh
Q 036704 179 PDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFS 258 (634)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 258 (634)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------- 91 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----------- 91 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------
Confidence 344555666666666666666666666666542 23455666666666666666666666665544332
Q ss_pred ccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH----hHHHHHHHHhcCCCChHHHHHHHH
Q 036704 259 KLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG----LTVRSLLCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~ 334 (634)
.+...|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+...+.
T Consensus 92 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------- 142 (450)
T 2y4t_A 92 --------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE------------- 142 (450)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------
T ss_pred --------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-------------
Confidence 34555666666666666666666666666543 2222 22222211100
Q ss_pred HHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 036704 335 YIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMN 414 (634)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 414 (634)
...+..+...+...|++++|...++++.+.... +...+.
T Consensus 143 ----------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 181 (450)
T 2y4t_A 143 ----------------------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRE 181 (450)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 012333455677889999999999999887654 778889
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH--------
Q 036704 415 GLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGV-------- 482 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l-------- 482 (634)
.+..+|.+.|++++|...|+.+.+ .+..+|..+...|...|++++|...++++.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998763 56778999999999999999999999999876 444 4444444
Q ss_pred ----HHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036704 483 ----LTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLL 551 (634)
Q Consensus 483 ----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 551 (634)
...+...|++++|...|+++... .|+ ...+..+..++.+.|++++|++.++++ ...| +...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999864 444 447888999999999999999999997 4344 688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI------------YASSG-----KWEEVARLMGS 603 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 603 (634)
.+|...|++++|...++++++..|+++.++..++.+ |...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999844 44455 56677777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=192.14 Aligned_cols=367 Identities=9% Similarity=-0.033 Sum_probs=280.1
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHH
Q 036704 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIA 224 (634)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 224 (634)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45578889999999999999999999998753 4567889999999999999999999999999876 335778899999
Q ss_pred HHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 225 MYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNL---ASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
+|.+.|++++|...|+++.+.++ .+. ..+..++..+...+.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~-------- 149 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-------------------------SENEEKEAQSQLIKSDEMQRLRSQ-------- 149 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-------------------------CChhhHHHHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999877654 344 667766655322222211
Q ss_pred hhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036704 302 GDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDV 381 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (634)
...+...|+++.|...++.+.+.. +.+...+..+
T Consensus 150 ---------------a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l 183 (450)
T 2y4t_A 150 ---------------ALNAFGSGDYTAAIAFLDKILEVC-------------------------------VWDAELRELR 183 (450)
T ss_dssp ---------------HHHHHHHTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHH
T ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHhC-------------------------------CCChHHHHHH
Confidence 222333444444444444443321 4567788889
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-hhhHHHH-----------
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-VVSWSSL----------- 447 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----------- 447 (634)
..++...|++++|...++++.+.... +..++..+..+|...|++++|...|+.+.+ |+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543 678899999999999999999999998763 43 3344444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 448 -IVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 448 -~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++... .+.+...+..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 78899999999999999999886 454 347888899999999999999999999864 23467889999999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCCch--
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS------------CKTHG-----NVDVGKRAAEN-ILKIDPTNSA-- 579 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~-- 579 (634)
|...|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ +++..|++..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~ 418 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE 418 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999998 6666 46666666633 33344 66788888886 6777776432
Q ss_pred --------hHHHHHHHHHhcCChHHH
Q 036704 580 --------ALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 580 --------~~~~l~~~~~~~g~~~~A 597 (634)
.+..+..+|...|+.+++
T Consensus 419 ~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 419 EEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-20 Score=192.90 Aligned_cols=442 Identities=9% Similarity=-0.055 Sum_probs=311.9
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
+..+..++..+.+.|++++|.+.|++....+|. .+. .+...+.+.|++++|++.|+++.+. .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS-NISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 345567799999999999999999997754433 343 5677799999999999999999986 4556778999999
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC------CCccchHHHHHHHHhCCCh
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------RNVVSWTAMIAGCSQNGQE 162 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~ 162 (634)
++...|++++|...|+ ..... |+. ....+..+...+....|...++.+.. +........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 33322 221 12234455556667788888887653 2223345556666666666
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 036704 163 NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 242 (634)
+.+...+..... ..+....+...+...... + .-......|++++|..+++++
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--------------------~------~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSA--------------------T------DEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC--------------------S------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHh--------------------h------hhhhHHHHHHHHHHHHHHHHH
Confidence 665544433221 112211111111111000 0 001111235667777777766
Q ss_pred CCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC
Q 036704 243 ARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322 (634)
Q Consensus 243 ~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 322 (634)
.+.++....... .-..+|..+...+...|++++|...+..+... .|+...+..+...+..
T Consensus 229 l~~~p~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 229 LSANTVDDPLRE------------------NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLAD 288 (537)
T ss_dssp HC--CCCHHHHH------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCC
T ss_pred HHHCCCcchhhH------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH
Confidence 554431100000 00234667778889999999999999999875 5667888889999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHH
Q 036704 323 PLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIM 402 (634)
Q Consensus 323 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 402 (634)
.|+++.|...+..+.+.. +.+..++..+...+...|++++|...++++.
T Consensus 289 ~~~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-------------------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999988888877653 4467789999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----C
Q 036704 403 KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-----P 474 (634)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p 474 (634)
+.... +...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.... .
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 88754 667888999999999999999999998763 45668899999999999999999999998765311 1
Q ss_pred CHHHHHHHHHHhccc----------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036704 475 NHVTLVGVLTACSHV----------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD 543 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 543 (634)
....+......+... |++++|...++++.+. .+.+...+..+..+|.+.|++++|.+.|++. ...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 223345556677777 9999999999999864 2346778899999999999999999999998 44443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=171.02 Aligned_cols=325 Identities=10% Similarity=0.007 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMS 296 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 296 (634)
..+..+...+...|++++|...|+++.+.++ .+..+|..+...+...|++++|..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 58 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-------------------------DNYIAYYRRATVFLAMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------------------------ccHHHHHHHHHHHHHccCHHHHHH
Confidence 3444555556666666666666655544332 345556666666666666666666
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCC-ChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCH
Q 036704 297 LFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYS-NVPVCNAILQHQAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 297 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 375 (634)
.++++.+.. +.+...+..+...+...|++++|...++.+.+..... +.. .+...+..+. ..
T Consensus 59 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~------~~ 120 (359)
T 3ieg_A 59 DLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-----------EAESQLVKAD------EM 120 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-----------HHHHHHHHHH------HH
T ss_pred HHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-----------HHHHHHHHHH------HH
Confidence 666665431 1234555555566666666666666555554432100 000 0000000000 00
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYA 452 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 452 (634)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+...+.
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11223356677778888888888887776543 566777777777777787777777776543 34556777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-h----hHH
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLV------------GVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-R----ERR 515 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~ 515 (634)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...++++... .|+ . ..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 275 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSK 275 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHH
Confidence 7777777777777777653 11222222 2244466667777777777766653 222 1 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
..+..++...|++++|.+.+++. ...| +..++..++..+...|++++|...++++++..|+++.++..+..+..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34556666666666666666666 2223 55666666666666667777777777666666666666666655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-18 Score=165.91 Aligned_cols=299 Identities=11% Similarity=0.006 Sum_probs=245.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
|+..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.|...++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 45567888899999999999999999987752 3356778888888888888888888877776642
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC--CchhHHHHH------------HHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA--LDVFVMNGL------------MDM 419 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~ 419 (634)
+.+...+..+...+...|++++|...++++.+.... .+...+..+ ...
T Consensus 68 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 68 ------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577888888999999999999999999876541 134444444 578
Q ss_pred HhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 420 YVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
+...|++++|...++.+. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999876 3566788899999999999999999999999874 446888999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhc
Q 036704 497 QLYRIMQNEYGIIPT-RERRS------------CVVDLLARAGRVHEAEDFINQM-AFDDD-I----VVWKSLLASCKTH 557 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~ 557 (634)
..++++.+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...
T Consensus 209 ~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 209 SEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 999999864 333 33322 2367789999999999999998 33343 3 2355678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 558 GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|++++|...++++++..|+++.++..++.++.+.|++++|.+.++++.+..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-18 Score=165.05 Aligned_cols=220 Identities=9% Similarity=-0.018 Sum_probs=166.3
Q ss_pred CHhHHHHHHHHhhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 374 DHITFNDVMGACAAMA-SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
+...+..+...+...| ++++|...++++.+.... +...+..+...+...|++++|...++++.+ .+...+..+..
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3445566666666777 777777777777665433 456677777777888888888888777652 33456777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI-------IPTRERRSCVVDLL 522 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 522 (634)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.....- +....++..+..+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 8888888888888888888764 335777888888888889999999988888764211 33456788888899
Q ss_pred HhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCChH
Q 036704 523 ARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY-ASSGKWE 595 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 595 (634)
...|++++|.+.+++. ... .+...+..+...+...|++++|...++++++..|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999887 323 36778888899999999999999999999999999999999998888 4555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-15 Score=157.22 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=180.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCC--CCHhHHHHHHHH---------------------------hcCCCChH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELI--PDGLTVRSLLCA---------------------------CTSPLSLY 327 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~---------------------------~~~~g~~~ 327 (634)
--...+++|...|.+.+|++++++....+-. -+...-+.++.+ +...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 3355667788889999999999888743210 111222223322 33344455
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhC
Q 036704 328 QGMQIHSYIIKKGFYSNVPVCNAILQH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTG 405 (634)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 405 (634)
+|..++++.. -.....+.+++. ++++|.++.++. -+..+|..+..++...|++++|...|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 5555554431 111112233322 555555555543 23556667777777777777777776543
Q ss_pred CCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 406 LALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL 483 (634)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 483 (634)
-+...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++...+ .. .|+...|..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHH
Confidence 2556666677777777777777777765432 3333333466666766666643322 11 34556667778
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------------------
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAF----------------------- 540 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 540 (634)
..|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++...
T Consensus 1203 d~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888888888888888875 2578888888888999999888887721
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChHHHHHHHH
Q 036704 541 ----DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS--GKWEEVARLMG 602 (634)
Q Consensus 541 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 602 (634)
..++..+..++..|.+.|.+++|+++++.++.++|.+...|..++.+|++. ++..++.++|.
T Consensus 1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 113334556666777778888888888888887777777777777777654 35555655555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=161.78 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=200.1
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
.+...+..++.++...|++++|..+++++.+.... +...+..+...+...| ++++|...|+...+ .+...|..+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 132 (330)
T 3hym_B 54 FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132 (330)
T ss_dssp TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHH
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 34455666777888999999999999999987654 6778888999999999 99999999998763 4466899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccH
Confidence 99999999999999999999874 334677777899999999999999999999853 344678888999999999999
Q ss_pred HHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 529 HEAEDFINQM-AF----------DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 529 ~~A~~~~~~~-~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
++|.+.++++ .. +....++..++..+...|++++|+..++++++..|.++.++..++.++.+.|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 9999999987 11 334678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
.+.++++.+.
T Consensus 290 ~~~~~~al~~ 299 (330)
T 3hym_B 290 VDYFHTALGL 299 (330)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHcc
Confidence 9999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-14 Score=155.28 Aligned_cols=442 Identities=10% Similarity=0.067 Sum_probs=241.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHH
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAA 165 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 165 (634)
+...+...|.+++|..+|++.. -.....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 4445555555555555555531 0111111111 14455555555555442 234455566666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC
Q 036704 166 IELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK 245 (634)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 245 (634)
++.|.+. -|...|..++.++.+.|++++|.+++....+....| ...+.++.+|++.+++++...+.
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI------ 1190 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI------ 1190 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH------
Confidence 6665332 344455556666666666666666665555443222 22223555566665555433332
Q ss_pred CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 246 DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 246 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+
T Consensus 1191 -------------------------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1191 -------------------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred -------------------------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 1255566666777777777777777777763 367777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHh----HHHh-cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCN----AILQ-HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~----~ll~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
++.|.+.+++... ..+|. +.+. +.+..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA~n------~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKANS------TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhCC------HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766521 12221 1221 133333332221 344556677888888888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHHhh--cCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHH------
Q 036704 401 IMKTGLALDVFVMNGLMDMYVK--CGSLGSARELFNFMED--------PDVVSWSSLIVGYAQFGCGEEALKLF------ 464 (634)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~------ 464 (634)
..... +-....|+-+..+|++ -++..++.+.|..-.. .+...|.-++-.|.+.|+++.|....
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 76544 3345566555555554 3456666666664332 34456888888888888888887322
Q ss_pred -------HHHHhCCCCCCHHHHHHHHHHhcccC---------------CHHHHHHHHHHHH-----HHh----CCCCChh
Q 036704 465 -------RRMRSSGVRPNHVTLVGVLTACSHVG---------------LVEEGLQLYRIMQ-----NEY----GIIPTRE 513 (634)
Q Consensus 465 -------~~m~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~-----~~~----~~~~~~~ 513 (634)
.....+ ..|+..|...+.-|.... +++++.+++.+.- +.+ ...-+..
T Consensus 1385 a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~ 1462 (1630)
T 1xi4_A 1385 AWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKS 1462 (1630)
T ss_pred hhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchh
Confidence 111111 335555655555555444 5666666555211 000 0112333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C---------CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-A---------FDD-DIVVWKSLLAS-CKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+-.++.+.|...++++.-.+.++.. . ... +..-+..+... |.+.|+++.|.+++++. ..|
T Consensus 1463 Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d--------~l~ 1534 (1630)
T 1xi4_A 1463 VNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD--------SLY 1534 (1630)
T ss_pred hhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhc--------cCH
Confidence 3445666666666655444433333 1 011 22223344333 45558888888887762 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.-.+....+.|+.+.+.+++.-..+.
T Consensus 1535 ~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1535 KDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55667777778888887777766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=163.07 Aligned_cols=308 Identities=8% Similarity=-0.083 Sum_probs=209.2
Q ss_pred HHhcCChhHHHH-HHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhC
Q 036704 226 YTKFDRILDAWN-VFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDR 304 (634)
Q Consensus 226 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (634)
+...|++++|.. .|++.....+.. +..+...+..+...+.+.|++++|...|+++.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 93 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN---------------------PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ 93 (368)
T ss_dssp -----------CHHHHCCCCCCSSC---------------------TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC---------------------cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344577888887 777655432210 0124667888899999999999999999998875
Q ss_pred CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036704 305 ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGA 384 (634)
Q Consensus 305 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 384 (634)
. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 94 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~l~~~ 141 (368)
T 1fch_A 94 D-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------------------------------PDNQTALMALAVS 141 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------------------------CCCHHHHHHHHHH
Confidence 3 2344556666666666666666666555554432 3345566666666
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLF 464 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 464 (634)
+...|++++|...++++.+..... ...+..+.. ... ...+ ...+.. +..+...|++++|...+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~-------~~~-------~~~~-~~~~~~-~~~~~~~~~~~~A~~~~ 204 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAY-AHLVTPAEE-------GAG-------GAGL-GPSKRI-LGSLLSDSLFLEVKELF 204 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-GGGCC------------------------------CT-THHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH-------Hhh-------hhcc-cHHHHH-HHHHhhcccHHHHHHHH
Confidence 666666666666666666544321 111110000 000 0000 001112 23333889999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036704 465 RRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD 542 (634)
Q Consensus 465 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 542 (634)
+++.+..... +..++..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.++++ ...|
T Consensus 205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9998874221 4788899999999999999999999999864 2345778899999999999999999999998 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 543 -DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-----------SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 543 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+...+..++.+|...|++++|...++++++..|++ ..+|..++.+|...|++++|..++++..
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 67899999999999999999999999999988887 7899999999999999999999877443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-15 Score=155.68 Aligned_cols=205 Identities=9% Similarity=-0.015 Sum_probs=158.8
Q ss_pred hHHHHHHHHhhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHH
Q 036704 376 ITFNDVMGACAA----MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSS 446 (634)
Q Consensus 376 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 446 (634)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .++.++|...|+...+ .+...+..
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~ 296 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYY 296 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445555543 678888888888887765 44566666667766 7889999999987764 45667777
Q ss_pred HHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 447 LIVGYAQF-----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG---LVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 447 l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
|...|... +++++|..+|++..+.| +...+..+...|...| ++++|.+.|++..+. .+...+..+
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~L 369 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHH
Confidence 88888877 89999999999998875 4556666776676655 789999999998864 356778888
Q ss_pred HHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHH
Q 036704 519 VDLLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPT---NSAALVLLCNI 587 (634)
Q Consensus 519 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 587 (634)
...|.. .+++++|.++|++.....++..+..+...|.. .++.++|...|+++.+..|+ ++.+...++.+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 888888 89999999999998334568888899999988 89999999999999998854 77777777766
Q ss_pred HHh
Q 036704 588 YAS 590 (634)
Q Consensus 588 ~~~ 590 (634)
+.+
T Consensus 450 ~~~ 452 (490)
T 2xm6_A 450 TAK 452 (490)
T ss_dssp CHH
T ss_pred CHh
Confidence 554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-15 Score=154.12 Aligned_cols=210 Identities=5% Similarity=-0.066 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-------cCChH-------HHHHHHhcCCC---C-ChhhHHHHHHHHHh
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVK-------CGSLG-------SARELFNFMED---P-DVVSWSSLIVGYAQ 453 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 453 (634)
..+..+|++++...+. +...|..++..+.+ .|+++ +|..++++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4677888888876433 67788888887775 68987 89999998763 4 46688889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCChH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPN-H-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDL-LARAGRVH 529 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~ 529 (634)
.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .|+ ...+...+.. +...|+++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 99999999999999986 454 3 47888888888999999999999999853 332 3333322222 34689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA----ALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++. +|...+....+.|+.+.+..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 3334 6789999999999999999999999999998776655 788888888889999999999998
Q ss_pred HHhC
Q 036704 604 MKER 607 (634)
Q Consensus 604 ~~~~ 607 (634)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=152.41 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred hhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 23 ELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+.|++++|.+.++++..| ..|. .+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs-~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWS-QLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHH-HHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3568899999999999655 6898 8899999999999999999643 4677999999999999999999998
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF 182 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 182 (634)
++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8877764 45578888999999999999998887753 66678888888888888888888888755 2
Q ss_pred hHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 183 TFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
.|..+..++.+.|++++|.+.+..+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 3444555444444444444444433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-15 Score=150.12 Aligned_cols=352 Identities=12% Similarity=0.009 Sum_probs=257.4
Q ss_pred ChhhHHHHHHHhhc----CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHhccCCCCcchHH
Q 036704 180 DQFTFGSIIRACSG----LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK----FDRILDAWNVFSSIARKDITSWG 251 (634)
Q Consensus 180 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 251 (634)
+...+..+-..+.. .+++++|...++...+.| +...+..|...|.. .+++++|...|++..+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------ 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------
Confidence 34444444444444 566666666666666543 34455566666666 66777777776654332
Q ss_pred HHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC----C
Q 036704 252 SMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS----CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS----P 323 (634)
Q Consensus 252 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 323 (634)
.++..+..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .
T Consensus 109 ---------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 109 ---------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ---------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 244555666666666 677777777777776654 23333333333332 3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cccHHHHHHHHH
Q 036704 324 LSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAA----MASLEMGTQLHC 399 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 399 (634)
++ .++|.+.|++..+.| +...+..+...+.. .++.++|...++
T Consensus 165 ~d------------------------------~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 165 RD------------------------------YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp CC------------------------------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CC------------------------------HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 33 444444554444432 45566666666666 789999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 036704 400 YIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLIVGYAQ----FGCGEEALKLFRRMRSS 470 (634)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~ 470 (634)
+..+.+ +...+..+...|.. .+++++|...|+...+ .+...+..+...|.. .++.++|..+|++..+.
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 999876 56677778888876 7899999999998764 566677888888888 89999999999999887
Q ss_pred CCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCC
Q 036704 471 GVRPNHVTLVGVLTACSHV-----GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG---RVHEAEDFINQMAFDD 542 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 542 (634)
| +...+..+...+... +++++|...+++..+. + +...+..+...|...| ++++|+++|++.....
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 5 556677777777776 8999999999999864 3 4566777888887766 8899999999983346
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036704 543 DIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS----SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 543 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 609 (634)
++..+..+...|.. .+++++|...++++.+.. ++.++..++.+|.+ .+++++|...+++..+.+.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 78899999999988 899999999999998864 68899999999998 8999999999999998774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-17 Score=155.14 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=30.9
Q ss_pred ccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 127 KCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
+.|++++|.+.++++..| .+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667888888888888555 4888899999999999999988864 25777888888888888899988887776
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHH
Q 036704 207 VIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVA 286 (634)
Q Consensus 207 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 286 (634)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------pn~~a~~~IGd~~~ 133 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------PNNAHIQQVGDRCY 133 (449)
T ss_dssp ------------------------CHHHHTTTTTC-------------------------------C-------------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------------------------------CcHHHHHHHHHHHH
Confidence 6663 44467788888899999999888877753 67778888999999
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHH
Q 036704 287 SCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIH 333 (634)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 333 (634)
..|.+++|..+|..+ ..|..+..++.+.|++++|.+.+
T Consensus 134 ~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 134 DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999866 24555555555555544444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=159.87 Aligned_cols=261 Identities=9% Similarity=-0.063 Sum_probs=187.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
+...|..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~------------------------------------------ 100 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAE------------------------------------------ 100 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH------------------------------------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHH------------------------------------------
Confidence 45668888888999999999999998887642 12233
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
++..+...+...|++++|...++++.+.... +...+..+..+|...|++++|...+
T Consensus 101 -----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 101 -----------------------AWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccccHHHHHHHH
Confidence 3444444455555555555555555544322 3445555555555555555555555
Q ss_pred hcCCC--C-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 434 NFMED--P-----------DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 434 ~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
+++.+ | ....+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...+
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55432 1 1223445677888999999999999999887422 15788999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT- 576 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~- 576 (634)
+++.+. .+.+..++..+..+|.+.|++++|++.++++ ...| +..++..++.+|...|++++|...++++++..|+
T Consensus 237 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 237 NAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999864 3446788999999999999999999999988 4444 5889999999999999999999999999998776
Q ss_pred -----------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 577 -----------NSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 577 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+..+|..++.++...|+.+.|..+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 477899999999999999999888764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-15 Score=153.53 Aligned_cols=215 Identities=8% Similarity=0.062 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-------cccHH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAA-------MASLE-------MGTQLHCYIMKTGLALDVFVMNGLMDMYVKC 423 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (634)
++..+|++..... +-+...|......+.+ .|+++ +|..++++..+.-.+-+...+..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4445555555431 4456667777766664 68876 8999999988632334688899999999999
Q ss_pred CChHHHHHHHhcCCC--CC-h-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCCHHHHHHH
Q 036704 424 GSLGSARELFNFMED--PD-V-VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHVGLVEEGLQL 498 (634)
Q Consensus 424 g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~ 498 (634)
|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..+|++..+.. +.+...|...+.. +...|++++|..+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999998763 43 2 478888888999999999999999999863 2233333332222 3358999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM----AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
|++..+.. +.+...+..++..+.+.|+.++|..+|++. +..| ....|...+......|+.+.+..+.+++.+
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998752 335788899999999999999999999998 2233 245888888888899999999999999999
Q ss_pred cCCC
Q 036704 573 IDPT 576 (634)
Q Consensus 573 ~~p~ 576 (634)
..|+
T Consensus 492 ~~p~ 495 (530)
T 2ooe_A 492 AFRE 495 (530)
T ss_dssp HTHH
T ss_pred HCch
Confidence 8884
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=156.07 Aligned_cols=387 Identities=10% Similarity=-0.064 Sum_probs=214.3
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCC-ChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc------CC
Q 036704 148 SWTAMIAGCSQNGQENAAIELYVQMLQS-------GLMP-DQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE------HG 213 (634)
Q Consensus 148 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 213 (634)
.||.|...+...|++++|++.|++..+. ...| ...+|+.+...+...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4555555555556666665555544321 1112 23456666666666777777766666655431 01
Q ss_pred C-ChhHHHHHHHHHHh--cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHH---HHc
Q 036704 214 S-HLISQNALIAMYTK--FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAG---VAS 287 (634)
Q Consensus 214 ~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~---~~~ 287 (634)
+ ...++..+..++.. .+++++|...|++..+.++ .++..+..+..+ +..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-------------------------~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-------------------------KNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHhcC
Confidence 1 22344444444444 3457778877776554333 234444444433 345
Q ss_pred CCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHh----cCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIP-DGLTVRSLLCAC----TSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRL 362 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~ 362 (634)
.++.++|++.+++..+. .| +...+..+...+ ...++.+.|.+.++......
T Consensus 188 ~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------------------- 243 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------------------- 243 (472)
T ss_dssp SCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----------------------
T ss_pred chHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----------------------
Confidence 57777788887776653 33 233333333222 22344445555444443321
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV 442 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 442 (634)
+.+...+..+...+...|++++|...+.++.+..+. +..++..+..+|...+....+ ... .
T Consensus 244 ---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~-----~~~-~--- 304 (472)
T 4g1t_A 244 ---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMN-----LRE-N--- 304 (472)
T ss_dssp ---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHH-----C-------
T ss_pred ---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhh-----HHH-H---
Confidence 445667788888888999999999999988877654 556666666555432111111 000 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh----HHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE----RRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l 518 (634)
.........+..+.|...+++..+.. +.+..++..+...+...|++++|...|+++... .|+.. .+..+
T Consensus 305 ---~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 305 ---GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRY 377 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHH
Confidence 00111112234577888888887764 334667788888999999999999999988753 33322 22233
Q ss_pred HH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 519 VD-LLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 519 ~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
.. .+...|++++|++.|++. .+.|+...... ....+..++++.++.+|.++.+|..++.+|...|++++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 32 234678999999999887 66665433222 23455677888889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcCCCCccEE
Q 036704 597 VARLMGSMKERGVRKVPGQSWI 618 (634)
Q Consensus 597 A~~~~~~~~~~g~~~~~~~~~~ 618 (634)
|++.+++.++.|-..+...+|+
T Consensus 449 A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 449 ADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999998775544344554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=156.85 Aligned_cols=301 Identities=9% Similarity=-0.061 Sum_probs=169.9
Q ss_pred hcCChHHHHH-HHHHhhhcCCCCC--CcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Q 036704 56 KQNLYNEALV-AFDFLQNNTNFRI--RPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLE 132 (634)
Q Consensus 56 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 132 (634)
-.|++++|++ .|+.........| +...+..+...+...|+++.|...++++.+.. +.+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3477888888 8876664311122 34568888888888999999999999988775 556778888888888888888
Q ss_pred HHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhcCCCchhHhHHHHHHH
Q 036704 133 DARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF-TFGSIIRACSGLCCVGLGRQLHAHVI 208 (634)
Q Consensus 133 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (634)
+|...|++..+ .+..++..+...+...|++++|...++++.... |+.. .+..+... ..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh---------
Confidence 88888887652 456678888888888899999999998888754 3322 11111000 00
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 209 KSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
...+. ..+..+...+ ..|++++|...|+++.+.++. .++..++..+...+...
T Consensus 178 --~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~-----------------------~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 178 --GAGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPT-----------------------SIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT-----------------------SCCHHHHHHHHHHHHHT
T ss_pred --hhccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC-----------------------cccHHHHHHHHHHHHHc
Confidence 00000 0001111122 455555555555555433220 01345555666666666
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------- 281 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---------------------------- 281 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------
Confidence 66666666666654431 1123344444444444444444444444433321
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL----------DVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
+.+...+..+..++...|++++|...++++.+..... ...++..+..++...|+.++|..++.
T Consensus 282 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 282 ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 2344556666667777777777777777666443221 14566666666666777766666655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=154.74 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=195.6
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
+...+..+...+.+.|++++|...++++.+..+. +...+..+..++.+.|++++|...|+++.+ .+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456888889999999999999999999988754 788899999999999999999999998763 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPN-----------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.......++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998763 32 22233457788999999999999999997633223688899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
..|...|++++|++.++++ ... .+..+|..++.+|...|++++|+..++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 333 46889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=144.47 Aligned_cols=273 Identities=8% Similarity=0.013 Sum_probs=210.0
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCH--hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDG--LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGEL 359 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a 359 (634)
|+-....|++..|+..++..... .|+. .....+..++...|+++.|...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------------------------ 59 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------------------------ 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------------------------
Confidence 34456678999999988776443 4443 3445566778888877766653321
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED 438 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (634)
.-+|+..++..+...+...++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ .
T Consensus 60 ----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~ 127 (291)
T 3mkr_A 60 ----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--G 127 (291)
T ss_dssp ----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--C
T ss_pred ----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--C
Confidence 125667788889999999999999999999999877544 556677778899999999999999998 5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTL---VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
.+...+..++..+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...+
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~ 203 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLL 203 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 667788999999999999999999999999874 553211 22334444568999999999999975 45578889
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV-GKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+.+..++.+.|++++|.+.+++. ...| ++.++..++..+...|+.++ +.++++++++..|+++.+.. ...+.+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~ 279 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKEN 279 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHH
Confidence 99999999999999999999997 4444 78889999999999999875 67899999999999987554 344555
Q ss_pred ChHHHHHH
Q 036704 593 KWEEVARL 600 (634)
Q Consensus 593 ~~~~A~~~ 600 (634)
.++++..-
T Consensus 280 ~fd~~~~~ 287 (291)
T 3mkr_A 280 DFDRLVLQ 287 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=151.24 Aligned_cols=230 Identities=10% Similarity=-0.072 Sum_probs=187.8
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-hhhHHHH-
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-VVSWSSL- 447 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l- 447 (634)
+.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.+.++.+.+ |+ ...+..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence 345567777788888888888888888888877543 677788888888888999988888887653 22 2223222
Q ss_pred -------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 448 -------------IV-GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 448 -------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
.. .+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 207 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQ 207 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 22 3777889999999999998874 336888999999999999999999999999864 234577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------Cch
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------------NSA 579 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~ 579 (634)
.+..+...+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++++..|. ++.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 8889999999999999999999998 3334 6889999999999999999999999999999998 788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++..++.++.+.|++++|..++++..
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999987554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-16 Score=145.16 Aligned_cols=242 Identities=11% Similarity=0.045 Sum_probs=195.2
Q ss_pred HHhcCHhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHH
Q 036704 351 ILQHQAGELFRLFSLMLASQTKPDH--ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 351 ll~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (634)
+..+++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 334566667666655432 23433 3456678899999999999986654 245577788889999999999999
Q ss_pred HHHHHhcCC----CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 429 ARELFNFME----DPD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 429 A~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
|.+.++.+. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999863 244 45667777899999999999999987 4578889999999999999999999999998
Q ss_pred HHhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 504 NEYGIIPTRERR---SCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 504 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+. .|+.... ..++..+...|++++|..+|+++ ..+.++..++.++.++...|++++|+..++++++.+|+++
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 65 3554322 23445555679999999999998 4445788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEE-VARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 607 (634)
.++..++.++...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999976 57899988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=146.38 Aligned_cols=384 Identities=11% Similarity=-0.034 Sum_probs=186.8
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHc-----C---CCCCcchhhHHHHHHHccCChHHHHHHhccCCC-------
Q 036704 79 RPSTYADLISACSSLRSLQLGRKVHDHILSS-----K---CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------- 143 (634)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 143 (634)
....|+.+..++...|++++|.+.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445677777777777777777777765542 1 112234566666677777777777666654321
Q ss_pred ---C-CccchHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---hhcCCCchhHhHHHHHHHHhcCC
Q 036704 144 ---R-NVVSWTAMIAGCSQ--NGQENAAIELYVQMLQSGLMPDQ-FTFGSIIRA---CSGLCCVGLGRQLHAHVIKSEHG 213 (634)
Q Consensus 144 ---~-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 213 (634)
+ ...+++.+..++.. .+++++|+..|++..+.. |+. ..+..+..+ +...++.++|...+++..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11233333333333 346778888887776642 433 233333222 3345666677777776666532
Q ss_pred CChhHHHHHHHHHH----hcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCC
Q 036704 214 SHLISQNALIAMYT----KFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCS 289 (634)
Q Consensus 214 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 289 (634)
.+..++..+...+. ..|++++|.+.+++....++ .+...+..+...|...|
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-------------------------~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-------------------------GVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-------------------------SCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-------------------------cHHHHHHHHHHHHHHcC
Confidence 22333433333333 33556666666665443332 35566677777777777
Q ss_pred ChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 290 NANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 290 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
++++|...+.+..+. .|+ ..++..+.
T Consensus 262 ~~~~A~~~~~~al~~--~p~~~~~~~~lg--------------------------------------------------- 288 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--IPNNAYLHCQIG--------------------------------------------------- 288 (472)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHH---------------------------------------------------
T ss_pred chHHHHHHHHHHHHh--CCChHHHHHHHH---------------------------------------------------
Confidence 777777777776543 232 22222221
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHH
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWS 445 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 445 (634)
.++...+....+. . ...........+..+.|...++... ..+...+.
T Consensus 289 --------------~~y~~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 289 --------------CCYRAKVFQVMNL---------R-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp --------------HHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred --------------HHHHHHHHHhhhH---------H-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 1111100000000 0 0000000001112334444444432 23345677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV--TLVGVLT-ACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.+...|...|++++|...|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH----
Confidence 77777888888888888888877764333211 1222222 23467888888888888773 45554332222
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 523 ARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...+.+++++. . .+.++.+|..++.+|...|++++|++.|+++++..|.+|.+...++
T Consensus 412 -----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 -----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22334444443 2 2336778999999999999999999999999999998887776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-14 Score=134.85 Aligned_cols=221 Identities=9% Similarity=0.014 Sum_probs=192.6
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C----C----hhhH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P----D----VVSW 444 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~ 444 (634)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...++...+ | + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778889999999999999999999888 6888999999999999999999999998763 2 2 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
..+...+...|++++|...++++.+. .|+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88999999999999999999999986 4553 3456678899999999998852 23356678889999999
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|++++|.+.++++ . .+.+..++..++..+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998 3 334688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036704 603 SMKERG 608 (634)
Q Consensus 603 ~~~~~g 608 (634)
++.+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 987643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=132.19 Aligned_cols=195 Identities=17% Similarity=0.073 Sum_probs=152.7
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 407 ALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL 483 (634)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 483 (634)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34666777788888888888888888887653 345678888888889999999999999988874 22567788888
Q ss_pred HHhccc-----------CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036704 484 TACSHV-----------GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSL 550 (634)
Q Consensus 484 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 550 (634)
..+... |++++|...+++..+. .| +...+..+..+|...|++++|++.|++. ....++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999864 44 5678888999999999999999999988 211788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..++...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=139.19 Aligned_cols=230 Identities=13% Similarity=0.023 Sum_probs=195.5
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
+...+..+...+...|++++|..+++++.+.... +...+..+..++...|++++|...++++.+ .+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 3345677788899999999999999999987654 778888899999999999999999998763 456788899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH--------------HH-HhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGV--------------LT-ACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|...++++.+. .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 999999999999999999874 33 3333332 22 377889999999999999864 2346788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+.+.|++++|.+.++++ ... .+...+..++..+...|++++|...++++++..|.++.++..++.++.+.|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999998 333 468899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 036704 593 KWEEVARLMGSMKERG 608 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~g 608 (634)
++++|.+.++++.+..
T Consensus 255 ~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999988643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=165.54 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=111.4
Q ss_pred CcchhhHHHHHHHccCChHHHHHHhccCC-------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 036704 114 DAVLHNHILNMYGKCGSLEDARMVFDEMP-------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGS 186 (634)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 186 (634)
-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCc-hhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 187 IIRACSGLCCV-GLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 187 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998877665444444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-16 Score=161.39 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh---CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGD---RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI 351 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (634)
..+||+||.+|++.|++++|.++|.+|.+ .|+.||..||+++|.+|++.|++++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~e----------------------- 183 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE----------------------- 183 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHH-----------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHH-----------------------
Confidence 46899999999999999999999988764 5899999999999999999996555
Q ss_pred HhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH
Q 036704 352 LQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS-LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 352 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
|.++|++|.+.|+.||..||+++|.++++.|+ .+.|.+++++|.+.|+.||..+|++++....+.+-++.+.
T Consensus 184 -------A~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 184 -------LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp -------HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred -------HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 55556666667789999999999999999997 5789999999999999999999999998777765555444
Q ss_pred HHHhcCCC-----CChhhHHHHHHHHHhcC
Q 036704 431 ELFNFMED-----PDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 431 ~~~~~~~~-----~~~~~~~~l~~~~~~~~ 455 (634)
++...+.- +...+...|.+.|.+.+
T Consensus 257 kv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 44333331 12334455566666544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-13 Score=127.46 Aligned_cols=238 Identities=9% Similarity=-0.071 Sum_probs=189.1
Q ss_pred CHhHHHHHHHHHHHCCC---CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHH
Q 036704 355 QAGELFRLFSLMLASQT---KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (634)
++++|+..++++.+... +.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence 55666666666665432 124567888899999999999999999999988754 78889999999999999999999
Q ss_pred HHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 432 LFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 432 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.|+.+.+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++.... .
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 9998763 45778999999999999999999999999986 455545455555667789999999999888864 3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..|...|++++|...++++++..|.+...+
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 252 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH- 252 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH-
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH-
Confidence 3444444 4777888889999999999987 33332 57888999999999999999999999999999876544
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~ 601 (634)
+.++...|++++|++.+
T Consensus 253 --~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 --RYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHhhHHHH
Confidence 55788889999998876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=122.71 Aligned_cols=224 Identities=7% Similarity=-0.062 Sum_probs=194.5
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLI 448 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 448 (634)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45677778888899999999999999999833 56777888888999 9999999999998763 4677888899
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 449 VGYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 449 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77888888888888 99999999999999864 3 5667778888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--
Q 036704 521 LLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS-- 590 (634)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 590 (634)
.|.. .+++++|.+.+++.-...++..+..+...|.. .+++++|+..++++.+..| +.++..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999988323467888899999999 9999999999999999876 7789999999999
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 036704 591 --SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 --~g~~~~A~~~~~~~~~~g~ 609 (634)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=125.56 Aligned_cols=239 Identities=10% Similarity=-0.050 Sum_probs=174.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH 354 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (634)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------ 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------
Confidence 4567888999999999999999999998876 77888999999999999999999888877653210
Q ss_pred CHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPD----HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
..++ ..++..+...+...|++++|...++++.+....
T Consensus 71 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------- 111 (258)
T 3uq3_A 71 ----------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------- 111 (258)
T ss_dssp ----------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------
T ss_pred ----------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------------
Confidence 0111 345666666667777777777777766654322
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 431 ELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
...+...|++++|...++++.... +.+...+..+...+...|++++|...++++... .+.
T Consensus 112 -----------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 171 (258)
T 3uq3_A 112 -----------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE 171 (258)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -----------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Ccc
Confidence 123444566677777777776652 223556677777777888888888888887754 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID------PTNSAALV 582 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~ 582 (634)
+...+..+..++.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++++.. |.+..++.
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 251 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHH
Confidence 5667777888888888888888888877 3333 57788888999999999999999999999887 77776666
Q ss_pred HHHH
Q 036704 583 LLCN 586 (634)
Q Consensus 583 ~l~~ 586 (634)
.+..
T Consensus 252 ~l~~ 255 (258)
T 3uq3_A 252 LYYK 255 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=128.85 Aligned_cols=378 Identities=8% Similarity=-0.031 Sum_probs=189.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCCh---HHHHHHhccCCCCCccchHHHHHHHHhCC--
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSL---EDARMVFDEMPQRNVVSWTAMIAGCSQNG-- 160 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 160 (634)
+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677788888888888887776 334445555666667777 78888888777666667777766555554
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHh---HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 036704 161 ---QENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR---QLHAHVIKSEHGSHLISQNALIAMYTKFDRILD 234 (634)
Q Consensus 161 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 234 (634)
++++|...|++..+.|. |+ .+..|...+...+..+.+. ..+......|
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----------------------- 139 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----------------------- 139 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----------------------
T ss_pred CCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----------------------
Confidence 67788888888887663 22 3444444444333332222 2222222222
Q ss_pred HHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHH
Q 036704 235 AWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR 314 (634)
Q Consensus 235 A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 314 (634)
++..+..|...|...+.++++........+.-.
T Consensus 140 ---------------------------------------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-------- 172 (452)
T 3e4b_A 140 ---------------------------------------YPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-------- 172 (452)
T ss_dssp ---------------------------------------CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--------
T ss_pred ---------------------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--------
Confidence 222233333333333333322222111111000
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc---cH
Q 036704 315 SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA---SL 391 (634)
Q Consensus 315 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~ 391 (634)
..++..+..+...+...| +.
T Consensus 173 ---------------------------------------------------------~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 173 ---------------------------------------------------------NTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp ---------------------------------------------------------TTCTTHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------cCCHHHHHHHHHHHHHcCCcccH
Confidence 001112333333333344 45
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc----CChHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCChHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKC----GSLGSARELFNFMEDPDVVSWSSLIVG-Y--AQFGCGEEALKLF 464 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~ 464 (634)
++|...+++..+.|.. +...+..+...|... ++.++|...|+.....++..+..|... + ...+++++|..+|
T Consensus 196 ~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 5555555555554432 333333444444333 456666666665552333445555554 3 3467777788887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHH
Q 036704 465 RRMRSSGVRPNHVTLVGVLTACSHVG-----LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVHEAEDFI 535 (634)
Q Consensus 465 ~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 535 (634)
++..+.| +...+..+...|. .| ++++|.+.|++.. .-+......|...|.. ..++++|.++|
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 7777765 4555555555555 44 7788887777664 2345556666666655 34788888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 536 NQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++.....++.....+...|.. ..|.++|...++++.+..+.........+......++.++|..+.++.++
T Consensus 346 ~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 346 LTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 877333445556666666653 35788888888888876654333222222222333466777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=126.63 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33334444444444444444443321 223344445555555555555555555555442 22345555555555555
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+...+..++..+...|++++|+..+
T Consensus 105 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566665555555543 1223445555555555666666666665555 21 224555555666666666666666666
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 568 ENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 568 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++++..|.++.++..++.+|.+.|++++|.+.++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=126.45 Aligned_cols=216 Identities=13% Similarity=0.047 Sum_probs=166.3
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
.....+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 44567778888999999999999999999986544 678888899999999999999999998763 46678889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998874 346788889999999999999999999999864 3346778889999999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 530 EAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 530 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+|.+.++++ .. +.+..++..++..|...|++++|...++++++..|+++.++..+..+....|
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999988 33 3468899999999999999999999999999999999998888766544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-13 Score=124.55 Aligned_cols=215 Identities=11% Similarity=-0.032 Sum_probs=138.7
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD--VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
+...+..+..++...|++++|...++++.+.+..++ ...+..+...+...|++++|...|+...+ .+...|..+.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334666677777777788888877777776332222 23366777777777777777777776652 3445677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR- 527 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 527 (634)
..|...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++++.+. .+.+...+..+..++...|+
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcc
Confidence 77777788888887777777652 224555555552333345788888887777753 22235556666666666666
Q ss_pred --hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 528 --VHEAEDFINQM----AFDDD------IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 528 --~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+++|...+++. ...|+ ..++..+...|...|++++|.+.++++++.+|+++.++..+.......
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 66677776665 22233 246667777777888888888888888888888887777776654433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-13 Score=123.00 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455555666666666666666665542 344566666677777777777777777776653 22456666677777
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
...|++++|.+.++++... +..| +...+..+...+...|++++|.+.++++ ...| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776641 2344 3455666677777777777777777776 2223 466777777777777888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
...++++++..|.+...+..++.++.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888877777777777777777777778888888877777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=119.15 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444455555555555555555554431 234456666666666677777777777666653 22456666667777
Q ss_pred ccc-CCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036704 487 SHV-GLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 487 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 562 (634)
... |++++|...++++... +..|+ ...+..+..++...|++++|.+.++++ ...| +...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777641 23332 455666677777777777777777766 2223 46677777777777888888
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDP-TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888877777 77777777777777778888887777777643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=115.03 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=145.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 440 DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 440 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678889999999999999999999998874 225788889999999999999999999998864 334566777788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
..+...++++.|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999987 3334 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=119.67 Aligned_cols=207 Identities=7% Similarity=-0.066 Sum_probs=177.9
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGY 451 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 451 (634)
...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+ .+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 456778888999999999999999999987644 678888999999999999999999998753 4667888999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
...|++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988434554 677888889999999999999999999865 23457788899999999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 531 AEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 531 A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
|.+.++++ ... .+...+..+...+...|++++|.+.++++.+..|+++.....+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999998 434 4677888899999999999999999999999999988765543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-13 Score=124.39 Aligned_cols=228 Identities=5% Similarity=-0.079 Sum_probs=187.5
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----hHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----SWSSLIV 449 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~ 449 (634)
..+......+...|++++|...++++.+..+. +...+..+..++...|++++|...++...+ ++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556677888999999999999999987654 566788888899999999999999998754 2322 3888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCh
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRV 528 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 528 (634)
.+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+ ..| +...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 33578899999999999999999999999874 344 566677777344455699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCChH
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKID---PTN-----SAALVLLCNIYASSGKWE 595 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 595 (634)
++|.+.++++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|.+.|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 4444 57788888999988888 888999999998865 442 258888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 036704 596 EVARLMGSMKERG 608 (634)
Q Consensus 596 ~A~~~~~~~~~~g 608 (634)
+|.+.++++.+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-12 Score=115.62 Aligned_cols=209 Identities=9% Similarity=-0.052 Sum_probs=178.2
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34567888889999999999999999999987654 677888999999999999999999998753 45678889999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 450 GYAQF-GCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 450 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 99999 999999999999998433444 677888899999999999999999999864 23357788899999999999
Q ss_pred hHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 528 VHEAEDFINQM-AF-D-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 528 ~~~A~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..|+++.+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999988 22 3 4677788888888999999999999999999999988776554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-13 Score=129.65 Aligned_cols=226 Identities=11% Similarity=0.060 Sum_probs=194.5
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC-hHHHHHHHhcCCC---CChhhHHHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS-LGSARELFNFMED---PDVVSWSSLIVGY 451 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 451 (634)
..+..+...+...|++++|...++++++.... +...|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46777778888999999999999999998765 78889999999999997 9999999998863 4567899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR-AGRVHE 530 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 530 (634)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999874 336888999999999999999999999999964 23367788899999999 666588
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC--------C
Q 036704 531 A-----EDFINQM-AFDD-DIVVWKSLLASCKTHG--NVDVGKRAAENILKIDPTNSAALVLLCNIYASSG--------K 593 (634)
Q Consensus 531 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 593 (634)
| ++.+++. ...| +...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 8 4778777 4455 6789999999998888 689999999998 999999999999999999875 2
Q ss_pred -hHHHHHHHHHH-Hh
Q 036704 594 -WEEVARLMGSM-KE 606 (634)
Q Consensus 594 -~~~A~~~~~~~-~~ 606 (634)
.++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 58999999998 54
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-13 Score=119.07 Aligned_cols=195 Identities=16% Similarity=0.082 Sum_probs=155.5
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 448 (634)
+++...+..+...+...|++++|...++++++..+. +...+..+..++.+.|++++|...+++..+ | +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 566677888888999999999999999999987655 778888999999999999999999998763 4 456788899
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH
Q 036704 449 VGYAQF-----------GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517 (634)
Q Consensus 449 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 517 (634)
..+... |++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 999999 99999999999999873 225778888999999999999999999999976 4 77888999
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
+..+|...|++++|+..+++. ...| +...+..+...+...|++++|+..++++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998 4444 67889999999999999999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-13 Score=124.23 Aligned_cols=219 Identities=12% Similarity=-0.024 Sum_probs=181.0
Q ss_pred hhccccHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLA---LDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGE 458 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 458 (634)
....|++++|...++++.+.... .+..++..+...+...|++++|...|+.+.+ .+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 45678999999999999976432 2466788899999999999999999998763 45778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999874 335788999999999999999999999999864 455545555556667789999999999776
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 539 --AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 539 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+++... ..++..+...++.++|...++++++..|. ++.++..++.+|.+.|++++|...++++.+.+
T Consensus 171 ~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 22333333 34777788889999999999999887664 37889999999999999999999999998754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-12 Score=124.61 Aligned_cols=215 Identities=9% Similarity=0.028 Sum_probs=181.1
Q ss_pred CCCHhHHHHHHHHhhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHH
Q 036704 372 KPDHITFNDVMGACAAMAS-LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSL 447 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 447 (634)
+-+...|..+..++...|+ +++|...++++++.... +...|..+..++...|++++|+..|+++.+ .+...|..+
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 4456788888899999996 99999999999998866 788899999999999999999999998873 566789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCCHHHH-----HHHHHHHHHHhCCCC-ChhHHHHHHH
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VGLVEEG-----LQLYRIMQNEYGIIP-TRERRSCVVD 520 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~ 520 (634)
..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++| +..++++... .| +...|..+..
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKG 282 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 999999999999999999999974 2367888888888888 5665777 4788888753 44 5678888888
Q ss_pred HHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhcCCCCchhHHHHHHH
Q 036704 521 LLARAG--RVHEAEDFINQMAFDD-DIVVWKSLLASCKTHG--------N-VDVGKRAAENI-LKIDPTNSAALVLLCNI 587 (634)
Q Consensus 521 ~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~ 587 (634)
++...| ++++|++.++++...| +...+..++..|...| + +++|+++++++ .+.+|.....|..++..
T Consensus 283 ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 899888 6999999999884445 5778889999998874 3 59999999999 89999999999999887
Q ss_pred HHhc
Q 036704 588 YASS 591 (634)
Q Consensus 588 ~~~~ 591 (634)
+..+
T Consensus 363 l~~~ 366 (382)
T 2h6f_A 363 LQSK 366 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-11 Score=121.63 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=164.0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC---ChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG---SLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
....+...+...+.++.+......+.+.-...++..+..+...|...| +.++|.+.|+...+ ++...+..|...
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455555555533333333222222222234448888888999999 89999999987753 344444667777
Q ss_pred HHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 451 YAQF----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-C--SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 451 ~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
|... +++++|..+|++.. .| ++..+..+... + ...+++++|.+.|++..+. | +......|...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH
Confidence 7655 79999999999988 43 45555556555 3 5689999999999999864 4 5667777887777
Q ss_pred hcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----
Q 036704 524 RAG-----RVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS---- 590 (634)
Q Consensus 524 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 590 (634)
.| ++++|.++|++.. ..++.....+...|.. ..++++|...|+++.+. .++.+...|+.+|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTB
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCC
Confidence 55 9999999999998 7788899999988876 34999999999998874 467788999999885
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 036704 591 SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~g~ 609 (634)
..+.++|...+++..+.|.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 3589999999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-13 Score=134.24 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCh-HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSL-GSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
++.+...++...... +.+...+..+...+...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544333 23677778888888888888 888888887652 3466888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CChH
Q 036704 467 MRSSGVRPNHVTLVGVLTACSHV---------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA--------GRVH 529 (634)
Q Consensus 467 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 529 (634)
..+. .|+...+..+...+... |++++|...++++.+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 57778888999999999 9999999999999864 233577888899999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 530 ~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+|++.|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4344 7889999999999999999999999999999999999999999999999999999975543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=128.67 Aligned_cols=298 Identities=12% Similarity=0.011 Sum_probs=181.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC----HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD----GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVC 348 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 348 (634)
+....+......+...|++++|...|++..+.+. .+ ...+..+...+...|+++.|...++.+.+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------- 75 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT---------- 75 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------
Confidence 3445566777888889999999999988877532 12 24566666677777777777666554432
Q ss_pred hHHHhcCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHhh
Q 036704 349 NAILQHQAGELFRLFSLMLASQTKPD-HITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-----LDVFVMNGLMDMYVK 422 (634)
Q Consensus 349 ~~ll~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~ 422 (634)
+... .+-.|. ..++..+...+...|++++|...+.++.+.... ....++..+...|..
T Consensus 76 -------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 76 -------------LART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp -------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 2211 121222 345666777777888888888888777643111 113356666777777
Q ss_pred cCC--------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-
Q 036704 423 CGS--------------------LGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV- 472 (634)
Q Consensus 423 ~g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~- 472 (634)
.|+ +++|...++...+ ++ ...+..+...|...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 777 7777776665431 11 22566666777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 036704 473 RPN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AF 540 (634)
Q Consensus 473 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 540 (634)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. ..
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 235666667777777777777777766543111111 345566667777777777777777665 11
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHH
Q 036704 541 DDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 541 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A 597 (634)
.++ ..++..+...|...|++++|...++++++..+... .++..++.++...|+...+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 111 44666667777777777777777777777766652 2445555555555554433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-13 Score=132.02 Aligned_cols=231 Identities=11% Similarity=-0.006 Sum_probs=176.6
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----C----Ch
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT----GL-ALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----P----DV 441 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~ 441 (634)
..+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...+++..+ . ..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 35677778888889999999988887743 11 22345677788888999999999998887653 1 23
Q ss_pred hhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGC-----------------GEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
..+..+...|...|+ +++|...+++..+. +-.| ...++..+...+...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 367778888999999 89998888886542 1112 2357778888899999999999999
Q ss_pred HHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 500 RIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDD----DIVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 500 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
++......-.++ ...+..+...|...|++++|.+.+++. .... ...++..+...+...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754221122 236778889999999999999999887 1111 2567888999999999999999999
Q ss_pred HHHHhcCCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 568 ENILKIDPT------NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 568 ~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++++..+. ...++..++.+|.+.|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999886443 245888999999999999999999998864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-11 Score=113.56 Aligned_cols=191 Identities=9% Similarity=-0.081 Sum_probs=146.8
Q ss_pred HHHHHHHhhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHH
Q 036704 378 FNDVMGACAA----MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLI 448 (634)
Q Consensus 378 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 448 (634)
+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3334444555 677777777777777665 56666777777777 7888888888776653 4566777788
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 449 VGYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 449 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|.. .+++++|+.+|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+..
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 190 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGN 190 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHH
Confidence 88888 889999999999988875 56667777777777 88999999999988864 2 4567778888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 036704 521 LLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.|.. .+++++|++.+++.-...+...+..+...|.. .+++++|.+.++++.+..|+++
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888 99999999999987222347788888899988 8999999999999999888644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-12 Score=123.71 Aligned_cols=232 Identities=14% Similarity=0.044 Sum_probs=177.2
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----h
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----V 441 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~ 441 (634)
..+..+...+...|+++.|...++++.+. +..+ ...++..+...+...|++++|...+++..+ ++ .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 45677778888889999998888887633 2222 245677788888999999999988887652 22 2
Q ss_pred hhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHH
Q 036704 442 VSWSSLIVGYAQFGC--------------------GEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
.++..+...+...|+ +++|...+++..+. +-.| ...++..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 367778888888898 89998888876542 1111 1456778888899999999999
Q ss_pred HHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 036704 497 QLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~ 564 (634)
..+++......-.++ ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999988754211122 336778889999999999999999887 11122 557788899999999999999
Q ss_pred HHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 565 RAAENILKIDPTN------SAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 565 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++++++..|.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999998865432 458889999999999999999999998864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-09 Score=113.66 Aligned_cols=218 Identities=6% Similarity=-0.029 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGT-QLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
++..+|++.... ++-+...|-..+.-+...|+.+.|. .++++.....+ .+...+-..+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556666554 2446667777777777788888886 99999987543 46677778888888999999999999987
Q ss_pred CC-------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cC
Q 036704 437 ED-------------PD------------VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VG 490 (634)
Q Consensus 437 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g 490 (634)
.+ |+ ...|...+....+.|+.+.|..+|++..+....+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 53 31 235777788888889999999999999876112233444433332223 35
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
+.+.|.++|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999999863 345666778888888999999999999998 3333 34578888888889999999999
Q ss_pred HHHHHHhcCCCCch
Q 036704 566 AAENILKIDPTNSA 579 (634)
Q Consensus 566 ~~~~~~~~~p~~~~ 579 (634)
+.+++.+..|+++.
T Consensus 563 v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 563 LEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHSTTCCH
T ss_pred HHHHHHHhCCCCcH
Confidence 99999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-12 Score=128.06 Aligned_cols=256 Identities=8% Similarity=-0.043 Sum_probs=141.5
Q ss_pred hccchHHHHHhcCCC--CC-----hhhHHHHHHHHHcCCChhHHHHHHHHHhhCC--CCCCH---hHHHHHHHHhcCCCC
Q 036704 258 SKLDFARTVFNEMES--PN-----LASWNTIIAGVASCSNANEAMSLFSEMGDRE--LIPDG---LTVRSLLCACTSPLS 325 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~---~~~~~ll~~~~~~g~ 325 (634)
++.+.|...|++..+ |+ ...|..+...+...|++++|...+++..... ...+. ..+..+...+...|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 334456555554432 22 2456666777777777777777777654321 11111 234444555556666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc---------------
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS--------------- 390 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------- 390 (634)
++.|...+....+. ..... .......++..+...+...|+
T Consensus 103 ~~~A~~~~~~al~~-----------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 103 FDEAIVCCQRHLDI-----------------------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHHHHHH-----------------------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HHHHHHHHHHHHHH-----------------------HHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 66666555444332 11110 001113356666667777777
Q ss_pred -----HHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHH
Q 036704 391 -----LEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIVGY 451 (634)
Q Consensus 391 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~ 451 (634)
++.|...+.+..+. +..+ ...++..+...+...|++++|...+++..+ ++ ..++..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 77777777666532 1111 123556666677777777777777766542 22 12566666677
Q ss_pred HhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLL 522 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 522 (634)
...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..++..+...|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 7777777777777766543100 11 345666666777777777777777766543211112 34555666777
Q ss_pred HhcCChHHHHHHHHhC
Q 036704 523 ARAGRVHEAEDFINQM 538 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~ 538 (634)
...|++++|.+.+++.
T Consensus 318 ~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7777777777776665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=122.68 Aligned_cols=225 Identities=7% Similarity=0.008 Sum_probs=171.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD-----VVSWS 445 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 445 (634)
....+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677889999999999998853 2111 345788888999999999999988887652 22 23678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CC-CCChhHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GI-IPTRERRS 516 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 516 (634)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999987754211 12 3478888899999999999999999887521 22 22356678
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM----AF--DD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
.+...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|+..+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 11 12 22345677888888898 78888888776 334445668889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 036704 587 IYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~ 606 (634)
+|.+.|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=105.53 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555566666666665555432 224555556666666666666666666666543 2234555666666677
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 524 RAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
..|++++|.+.++++ ..+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777666 223356777888888888889999999999988888888888888998899999999999988
Q ss_pred HHHHhCC
Q 036704 602 GSMKERG 608 (634)
Q Consensus 602 ~~~~~~g 608 (634)
+++.+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-09 Score=110.21 Aligned_cols=216 Identities=9% Similarity=-0.086 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH-HHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR-ELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
.+.+..+|++++..... ....|-..+..+...|+.++|. ++|++... | +...|-..+....+.|+++.|..+|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566778888876543 7788888888888899999996 99988763 3 444577788888899999999999999
Q ss_pred HHhCCC---------CCC------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 036704 467 MRSSGV---------RPN------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA 525 (634)
Q Consensus 467 m~~~~~---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (634)
+..... .|+ ...|...+....+.|+.+.|..+|.++.+.. ......+|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHh
Confidence 886410 132 2357777777778899999999999998641 122334444333333444
Q ss_pred -CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCChHHHHH
Q 036704 526 -GRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 526 -g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
++.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4599999999988 33346777788888888899999999999999998873 55678888888889999999999
Q ss_pred HHHHHHhCC
Q 036704 600 LMGSMKERG 608 (634)
Q Consensus 600 ~~~~~~~~g 608 (634)
+.+++.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=106.79 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=135.0
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA 485 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 485 (634)
+..+|..+...|.+.|++++|++.|++..+ .+...+..+..+|...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677777777888888888888877652 345577888888888899999999988887764 3356677777788
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...++++.|...+.+.... .+.+...+..+..+|.+.|++++|++.|++. ...| +..++..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988864 3345777888899999999999999999988 4444 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 036704 564 KRAAENILKIDPTNS 578 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~ 578 (634)
++.++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=125.24 Aligned_cols=233 Identities=18% Similarity=0.152 Sum_probs=167.8
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKT-------GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------P 439 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 439 (634)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+ +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888888999999999999999998864 3333566788888999999999999999987652 1
Q ss_pred ----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--
Q 036704 440 ----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-- 506 (634)
Q Consensus 440 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 506 (634)
....+..+...|...|++++|...++++.+. +-.| ....+..+...+...|++++|...++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2346788888999999999999999998764 2223 25667888889999999999999999887531
Q ss_pred ---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 036704 507 ---GIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-A---------FDDD-------IVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 507 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~~-------~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
+..| ...++..+..+|...|++++|.+.++++ . ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778889999999999999999877 1 1111 1223333344455667777778
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 566 AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=129.89 Aligned_cols=161 Identities=18% Similarity=0.175 Sum_probs=143.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCV 518 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 518 (634)
...|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|.+.|+++.+. .| +...+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457888889999999999999999998886 45 4788889999999999999999999998854 45 57788899
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
..+|.+.|++++|++.|++. ...| +...+..++.+|...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 5555 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036704 597 VARLMGSMKE 606 (634)
Q Consensus 597 A~~~~~~~~~ 606 (634)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=124.49 Aligned_cols=273 Identities=11% Similarity=0.005 Sum_probs=204.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-H----hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhH
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-G----LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNA 350 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (634)
..+..+...+...|++++|...|+++.+.+ |+ . ..+..+...+...|+++.|...++...+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 115 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------- 115 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 345566778999999999999999988763 33 2 46777778888899999998887766542
Q ss_pred HHhcCHhHHHHHHHHHHHCCC-CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHhhcC
Q 036704 351 ILQHQAGELFRLFSLMLASQT-KPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----GL-ALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 351 ll~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 424 (634)
.+. .+. +.....+..+...+...|++++|...+.++.+. +- +....++..+...|...|
T Consensus 116 ------------~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 ------------AKS---MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHH---ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 111 111 123356777888889999999999999888744 21 123456778888899999
Q ss_pred C-----------------hHHHHHHHhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--
Q 036704 425 S-----------------LGSARELFNFMED-----P----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN-- 475 (634)
Q Consensus 425 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-- 475 (634)
+ +++|...+++..+ . ....+..+...|...|++++|...+++..+.... ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 8999888877542 1 1236778888999999999999999998764211 12
Q ss_pred --HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC
Q 036704 476 --HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-------AFDD 542 (634)
Q Consensus 476 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~ 542 (634)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|.+.+++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 237788889999999999999999988754221111 456778899999999999999999987 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 543 -DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 543 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...++..+...|...|++++|...++++++..+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2457888999999999999999999999987763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-10 Score=109.74 Aligned_cols=217 Identities=8% Similarity=0.045 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-------cccH-------HHHHHHHHHHHHh-CCCCchhHHHHHHHHHh
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAA-------MASL-------EMGTQLHCYIMKT-GLALDVFVMNGLMDMYV 421 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 421 (634)
++|...|++..... +-+...|..+...+.. .|++ ++|..++++.++. .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45555665555532 3334444444444432 2443 5555555555542 22 13445555555555
Q ss_pred hcCChHHHHHHHhcCCC--CC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCCHHHHH
Q 036704 422 KCGSLGSARELFNFMED--PD-VV-SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACS-HVGLVEEGL 496 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~ 496 (634)
+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555442 22 22 45555555555555555555555555542 122333332222211 245555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A---FDD--DIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
++|++..+.. +.+...+..++..+.+.|++++|..+|++. . ..| ....|..++..+...|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555431 123445555555555555555555555555 1 132 2345555555555555555555555555
Q ss_pred HhcCCCCc
Q 036704 571 LKIDPTNS 578 (634)
Q Consensus 571 ~~~~p~~~ 578 (634)
++..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 55555533
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=118.36 Aligned_cols=272 Identities=12% Similarity=0.020 Sum_probs=200.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-----HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-----GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI 351 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (634)
.+......+...|++++|...|+++.+.. |+ ...+..+...+...|+++.|.+.+....+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 72 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 72 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 44556778899999999999999988753 33 356777788888999999998887766542
Q ss_pred HhcCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHhhcCC
Q 036704 352 LQHQAGELFRLFSLMLASQTK-PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LD----VFVMNGLMDMYVKCGS 425 (634)
Q Consensus 352 l~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 425 (634)
.... +.. ....++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|+
T Consensus 73 -----------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 73 -----------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -----------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 1111 111 12356777888889999999999999888743211 11 3467778888889999
Q ss_pred --------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 036704 426 --------------------LGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPN 475 (634)
Q Consensus 426 --------------------~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~ 475 (634)
+++|...+++..+ ++ ...+..+...+...|++++|...+++..+... .++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 8888888876542 22 23677788889999999999999998765311 112
Q ss_pred ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 036704 476 ----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD 543 (634)
Q Consensus 476 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~ 543 (634)
..++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++. +..++
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 347788888999999999999999988754221222 456778889999999999999999887 11112
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 544 ----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 544 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
..++..+...|...|++++|...++++++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999987664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-10 Score=108.94 Aligned_cols=211 Identities=5% Similarity=-0.069 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHh-------hcCCh-------HHHHHHHhcCCC---C-ChhhHHHHHHHHHhcC
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYV-------KCGSL-------GSARELFNFMED---P-DVVSWSSLIVGYAQFG 455 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~ 455 (634)
|..+|+++++..+. ++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+.|
T Consensus 35 a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 35 VMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 45566666655433 6677777776665 35776 899999997653 3 3457888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPN-HV-TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA-RAGRVHEAE 532 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 532 (634)
++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++|.
T Consensus 114 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 114 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp CHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999985 454 43 7888888889999999999999999853 2234445544433322 369999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 533 DFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKI---DPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 533 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ +..+|..++..+.+.|+.++|..+++++.+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988 223 36788899999999999999999999999985 443 677888899999999999999999999887
Q ss_pred CCC
Q 036704 607 RGV 609 (634)
Q Consensus 607 ~g~ 609 (634)
...
T Consensus 270 ~~p 272 (308)
T 2ond_A 270 AFR 272 (308)
T ss_dssp HTT
T ss_pred Hcc
Confidence 543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=106.46 Aligned_cols=164 Identities=8% Similarity=-0.002 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 520 (634)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+ ..| +...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 334444444444555555555555544443223444444444444455555555555554442 122 2334444445
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHH
Q 036704 521 LLARAGRVHEAEDFINQM-AFDD-DI-------VVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCNIYA 589 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~-~~~~-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 589 (634)
+|...|++++|++.+++. ...| +. ..+..+...+...|++++|++.++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555444 2122 22 23444444455555555555555555555555 5555555555555
Q ss_pred hcCCh---------------------------HHHHHHHHHHHhCC
Q 036704 590 SSGKW---------------------------EEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~---------------------------~~A~~~~~~~~~~g 608 (634)
..|+. ++|+..+++..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55544 99999999998743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-11 Score=120.34 Aligned_cols=178 Identities=9% Similarity=-0.069 Sum_probs=156.7
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 036704 426 LGSARELFNFME---DPDVVSWSSLIVGYAQFGCG-EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRI 501 (634)
Q Consensus 426 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 501 (634)
++++...++... ..+...+..+...+...|++ ++|+..|++..+.. +-+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666665543 24667888899999999999 99999999999874 23588999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 036704 502 MQNEYGIIPTRERRSCVVDLLARA---------GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH--------GNVDV 562 (634)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------g~~~~ 562 (634)
+. ...|+...+..+..+|... |++++|++.+++. ...| +...|..+..+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 4568888899999999999 9999999999998 4444 688999999999998 99999
Q ss_pred HHHHHHHHHhcCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDP---TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|+..|+++++.+| .++.++..++.+|...|++++|.+.++++.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-10 Score=98.80 Aligned_cols=169 Identities=17% Similarity=0.066 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998874 456678888999999999999999999998873 34678888899999
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 564 (634)
...|++++|.+.++++... .+.+...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999864 3446778888999999999999999999988 3 2346789999999999999999999
Q ss_pred HHHHHHHhcCCCCchhH
Q 036704 565 RAAENILKIDPTNSAAL 581 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~ 581 (634)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999888876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=114.52 Aligned_cols=200 Identities=8% Similarity=-0.041 Sum_probs=157.9
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CCh--
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL------DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PDV-- 441 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-- 441 (634)
..++..+...+...|+++.|...+.+..+..... ...+++.+...|...|++++|...+++..+ ++.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3567888889999999999999999988542111 235678888999999999999999987752 222
Q ss_pred --hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC---CCCC
Q 036704 442 --VSWSSLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG---IIPT 511 (634)
Q Consensus 442 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 511 (634)
.++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...+++...... .+..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 36888999999999999999999998772 2223 367788999999999999999999998775421 1112
Q ss_pred hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 512 RERRSCVVDLLARAGR---VHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
...+..+...|...|+ +++|+.++++.+..|+ ...+..+...|...|++++|...++++++..
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2335678888899999 9999999999865553 4477789999999999999999999988743
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=103.44 Aligned_cols=206 Identities=8% Similarity=0.040 Sum_probs=151.8
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 448 (634)
+.|+..+......+...|++++|...+++..+...+++...+..+..++...|++++|...++...+ | +...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4466788888888999999999999999999887656777777788888999999999999887753 3 345778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---hhHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNH-------VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---RERRSCV 518 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 518 (634)
..|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++. ...|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 88999999999999999888763 2234 456777777888889999999988887 34554 4566667
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
..+|...|+ ..++++ .. ..+...+.... ....+.+++|+..++++++..|+++.+...+..+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777765443 333333 11 12333333332 33456789999999999999999998888776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-09 Score=104.28 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=161.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C---C-
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LD----VFVMNGLMDMYVKCGSLGSARELFNFMED-------P---D- 440 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~---~- 440 (634)
.+..+...+...|+++.|...+.+....... .+ ..++..+...+...|++++|...+++..+ + .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 4556667778889999999988887743211 11 23356677788889999999888886642 1 1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR--P--NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS 516 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 516 (634)
...+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++.............+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 234566777888999999999999887764322 1 234677778888899999999999998875422211111121
Q ss_pred -----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cch
Q 036704 517 -----CVVDLLARAGRVHEAEDFINQM-AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------NSA 579 (634)
Q Consensus 517 -----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 579 (634)
..+..+...|++++|...+++. ...|. ...+..+...+...|++++|...++++....+. ...
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2334577899999999999988 22221 335667788888999999999999988774332 123
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..++.++...|++++|...+++..+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677788889999999999999888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=113.04 Aligned_cols=225 Identities=12% Similarity=-0.020 Sum_probs=167.7
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGL--A---LDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD-----VVSWS 445 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 445 (634)
....+...|++++|...++++.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999875321 1 1245677888899999999999888877642 22 33677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCCChhHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIPTRERRSC 517 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 517 (634)
.+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999887653 1111 13567788889999999999999999887521 22223567788
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM----AF--DD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
+...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|+..+++. ...|.....+..++.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 899999999999999999987 11 22 23455666667777888 77888877762 2334455677889999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036704 588 YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~ 606 (634)
|.+.|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=113.42 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=132.4
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C--
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT------GL-ALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------P-- 439 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 439 (634)
..+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...+++..+ +
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666667777778888888887777654 22 22355677778888888888888888876642 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh----
Q 036704 440 --DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---- 506 (634)
Q Consensus 440 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 506 (634)
....+..+...+...|++++|..+++++.+. +-.|+ ..++..+...+...|++++|...++++....
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1235777888899999999999999888764 21332 4567888889999999999999999887531
Q ss_pred --CCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 507 --GIIPTR-------ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 507 --~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
...+.. ..+..+...+...+.+.+|...++.. ...| ...++..++.+|...|++++|...+++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 111211 11222333444555666666677666 2333 466889999999999999999999999998776
Q ss_pred C
Q 036704 576 T 576 (634)
Q Consensus 576 ~ 576 (634)
.
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-09 Score=103.12 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=153.0
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCC-----CC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGL-----AL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD---- 440 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 440 (634)
.++..+...+...|+++.|...+.+..+... .+ ...+++.+...|...|++++|...+++..+ ++
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4677788888899999999999988874311 11 245677888899999999999998887653 22
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---h
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRS-----SGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---R 512 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 512 (634)
..++..+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++......-..+ .
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23677888999999999999999999877 42 223677888999999999999999999998865322222 3
Q ss_pred hHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 513 ERRSCVVDLLARAGR---VHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
..+..+...+...++ +.+|+.++++.+..|+ ...+..++..|...|++++|...++++++.
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345666777778888 9999999998754443 346778899999999999999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-10 Score=105.07 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=151.8
Q ss_pred hccccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----------CChhhHHHH
Q 036704 386 AAMASLEMGTQLHCYIMKT-------GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----------PDVVSWSSL 447 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 447 (634)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++..+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666677766666532 2233466788889999999999999999887652 123467888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh----C-CCC-ChhH
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY----G-IIP-TRER 514 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~ 514 (634)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++.... + ..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1123 35678888889999999999999999887531 1 122 3556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM----------AFDD-DIVVWKSLLASCKTHG------NVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~-~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~ 577 (634)
+..+..+|...|++++|.+.+++. ...+ ....+..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778889999999999999999876 1122 2223444443333322 2334444444444455667
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 578 SAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.++..++.+|.+.|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=100.65 Aligned_cols=194 Identities=9% Similarity=-0.065 Sum_probs=87.2
Q ss_pred HhhccccHHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHH
Q 036704 384 ACAAMASLEMGTQLHCYIMKT----GLALD-VFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIV 449 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 449 (634)
.+...|++++|...+.+..+. |-+++ ..+++.+..+|.+.|++++|+..+++..+ .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 11111 33455555555555555555555554431 11 124445555
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-----hHHHHH
Q 036704 450 GYAQF-GCGEEALKLFRRMRSSGVRP-N----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-----ERRSCV 518 (634)
Q Consensus 450 ~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l 518 (634)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|...|+++.....-.+.. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555554321000 0 2334455555555555555555555555321111111 023444
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDDDI------VVWKSLLASCK--THGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
..++...|++++|...+++. ...|+. ..+..++.++. ..+++++|+..|+++...+|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 45555555555555555554 323321 12223333332 2344555555555555544433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-09 Score=87.20 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=89.0
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 556 (634)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555666666666666666543 1224445555666666666666666666665 222356677777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888887764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-09 Score=101.77 Aligned_cols=201 Identities=12% Similarity=0.028 Sum_probs=149.0
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 036704 390 SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 460 (634)
++++|...+.++ ...|...|++++|...|.+..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 588888887776 3467788999999998887642 11 45788999999999999999
Q ss_pred HHHHHHHHhCCCC-CC----HHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036704 461 LKLFRRMRSSGVR-PN----HVTLVGVLTACSHV-GLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 461 ~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 530 (634)
+..+++..+.... .+ ..++..+...|... |++++|...|++......-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998754211 11 45788888999996 9999999999998864221111 3567888999999999999
Q ss_pred HHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCh
Q 036704 531 AEDFINQM-AFDD---DI-----VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA-----LVLLCNIYA--SSGKW 594 (634)
Q Consensus 531 A~~~~~~~-~~~~---~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 594 (634)
|++.+++. ...| .. ..+..++.++...|++++|+..+++++++.|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 2222 21 257788888999999999999999999999985543 445566664 45678
Q ss_pred HHHHHHHHHHH
Q 036704 595 EEVARLMGSMK 605 (634)
Q Consensus 595 ~~A~~~~~~~~ 605 (634)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 89988887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=92.73 Aligned_cols=181 Identities=12% Similarity=-0.010 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED--PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH----VTL 479 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~ 479 (634)
...+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 33444455566666777777777776652 322 345556666777777777777777766652 321 133
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H------------
Q 036704 480 VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI-V------------ 545 (634)
Q Consensus 480 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~------------ 545 (634)
..+..++...+.. .+ ..+..+...+...|++++|...|+++ ...|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 3333333321100 00 00000111111234444444444444 222211 1
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 546 -----VWKSLLASCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 546 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
....++..|...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456778899999999999999999999876 57899999999999999999999999876543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=96.72 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=107.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|+++.+. -+-+...+..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34455667788888888877654 333 455667778888888888888888888753 2235677888888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 527 RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA-AENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
++++|+..|++. ...| +...+..+...|...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888887 4455 577888888888889988766554 588999999999999888888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-08 Score=94.01 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=111.8
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 429 ARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 429 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
|...|++.. .++..++..+..++...|++++|++++.+.+..+..+ +...+...+..+.+.|+++.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555565544 2444455566777777788888888887776654322 355666777777788888888888887764
Q ss_pred HhCCCC-----ChhHHHHHHHH--HHh--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 036704 505 EYGIIP-----TRERRSCVVDL--LAR--AGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI- 573 (634)
Q Consensus 505 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 573 (634)
. .| +..+...|+.+ ... .+++++|..+|+++ ...|+..+-..+..++...|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 222 33788888888877 33454233333333677778888888888776664
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 574 ---------DPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 574 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+|+++.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777666666666676 777777777763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-08 Score=98.98 Aligned_cols=227 Identities=10% Similarity=-0.010 Sum_probs=167.8
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHhCCCCchh----HHHHHHHHHhhcCChHHHHHHHhcCCC-----CCh----hhHHH
Q 036704 380 DVMGACAAMASLEMGTQLHCYIMKTGLALDVF----VMNGLMDMYVKCGSLGSARELFNFMED-----PDV----VSWSS 446 (634)
Q Consensus 380 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 446 (634)
.....+...|++++|...+++........+.. .++.+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999999988765433322 456677888899999999999987653 222 23566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC-CC--ChhHHH
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSS----GVR--PN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI-IP--TRERRS 516 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~ 516 (634)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++......- .+ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 778899999999999999987653 222 32 345667788889999999999999998764211 11 234567
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM----AFDDDIVVWK-----SLLASCKTHGNVDVGKRAAENILKIDPTNS----AALVL 583 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~ 583 (634)
.+...+...|++++|...+++. ........+. ..+..+...|++++|...++++....|.+. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7888999999999999999886 2112211222 233447789999999999999988766532 24678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036704 584 LCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++.++...|++++|...++++.+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-09 Score=97.39 Aligned_cols=180 Identities=10% Similarity=0.015 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED--PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPN-HVTLVG 481 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 481 (634)
...+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444455555555555555555442 22 23444455555555555555555555554421 111 233444
Q ss_pred HHHHhcc--------cCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036704 482 VLTACSH--------VGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLA 552 (634)
Q Consensus 482 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 552 (634)
+..++.. .|++++|...|+++... .|+ ......+.......+.. ...+..++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444444 55555555555555543 121 11111111000000000 011366788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASS----------GKWEEVARLMGSMKER 607 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 607 (634)
.|...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999854 5888999999877 8999999999999874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=114.93 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=120.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLT 484 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 484 (634)
+...++.+...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345566666777777777777777766542 33556777777788888888888888887776 34 4677888888
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVD 561 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 561 (634)
++...|++++|.+.|+++.+. .| +...+..+..+|.+.|++++|++.|++. ...| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888753 34 4667788888888888888888888887 4455 5678888888888888888
Q ss_pred HHHHHHHHHHhcCC
Q 036704 562 VGKRAAENILKIDP 575 (634)
Q Consensus 562 ~a~~~~~~~~~~~p 575 (634)
+|.+.++++++..|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 88888888776443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-09 Score=96.70 Aligned_cols=204 Identities=11% Similarity=-0.017 Sum_probs=147.6
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC----hhh
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PD----VVS 443 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 443 (634)
+.+...+-.....+...|++++|...|+++.+..+.. ....+..+..+|.+.|++++|...|+...+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4456777788889999999999999999999876442 166788889999999999999999998863 32 235
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 444 WSSLIVGYAQ--------FGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 444 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 6777888888 99999999999999987 3442 222111 111111111 0112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTH----------GNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
+..+...|.+.|++++|+..|+++ ...| ....+..++.+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456778888999999999999887 2223 345777888888766 8999999999999999999864
Q ss_pred ---hHHHHHHHHHhcCChHH
Q 036704 580 ---ALVLLCNIYASSGKWEE 596 (634)
Q Consensus 580 ---~~~~l~~~~~~~g~~~~ 596 (634)
+...+..++.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=88.42 Aligned_cols=162 Identities=10% Similarity=-0.003 Sum_probs=134.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHhCCCCChhH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG----LVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
.++..+..|...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|.+.|++..+. + +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 566677778888888899999999999988876 56777777777877 6 899999999998753 3 5667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 515 RSCVVDLLAR----AGRVHEAEDFINQM-AFDDD---IVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 515 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+..|...|.. .+++++|+++|++. ...|+ +..+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888877 88999999999998 43443 7889999999988 88999999999999988 66788999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 036704 583 LLCNIYASS-G-----KWEEVARLMGSMKERGV 609 (634)
Q Consensus 583 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 609 (634)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999865 3 89999999999988775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-09 Score=98.04 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=135.9
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 430 RELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333333333344566677778888999999999999988873 225777888888999999999999999988743 4
Q ss_pred CChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHH
Q 036704 510 PTRERRSC-VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN--SAALVLL 584 (634)
Q Consensus 510 ~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l 584 (634)
|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 55443332 233466778888899888887 3344 68899999999999999999999999999999987 8899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036704 585 CNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.+|...|+.++|...+++...
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=82.77 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888889999999999999988764 335777888888889999999999999998864 234566778888999
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 523 ARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999987 3 23467788889999999999999999999999988853
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-09 Score=97.81 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHhhcCChHHHH
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT------GLA-LDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
+|++++.+......+....++..+...+...|++++|...++++.+. +-. ....++..+...|...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455555543332334567888999999999999999999998855 222 24567888999999999999999
Q ss_pred HHHhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCH
Q 036704 431 ELFNFMED-------P----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLV 492 (634)
Q Consensus 431 ~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~ 492 (634)
..+++..+ + ....+..+...|...|++++|..+++++.+. +-.| ...++..+...+...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 99987752 2 1346788889999999999999999998765 1123 256788889999999999
Q ss_pred HHHHHHHHHHHHHh------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 036704 493 EEGLQLYRIMQNEY------GIIP-TRERRSCVVDLLARAG------RVHEAEDFINQMA-FDD-DIVVWKSLLASCKTH 557 (634)
Q Consensus 493 ~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 557 (634)
++|...++++.+.. ...+ ....+..+...+...+ .+.++...++... ..| ...++..++..|...
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999887531 1122 2333433444443333 3444444555543 223 355788899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 036704 558 GNVDVGKRAAENILKI 573 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~ 573 (634)
|++++|...++++++.
T Consensus 266 g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 266 GKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=113.18 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=107.5
Q ss_pred hhcCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 421 VKCGSLGSARELFNFME-----------DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..++++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 55566666666666543 1334456666666777777777777777766653 22456666666667777
Q ss_pred CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
|++++|.+.|+++.+. .| +...+..+..+|.+.|++++ ++.|++. ...| +...+..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776643 23 45566666777777777777 7777666 3333 456677777777777777777777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
|+++++.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777655444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-08 Score=91.49 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP-----DVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
+...+++..+.+ .++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 345555567788889999999999999887432 44567778889999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--hcccC--CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 469 SSGVRP-----NHVTLVGVLTA--CSHVG--LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 469 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
+. .| +..+...++.+ ....| ++++|..+|+++... .|+......++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 56 35666666655 33334 899999999998743 455333344555889999999999999875
Q ss_pred CC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 539 AF-----------DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 539 ~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.. +.++.++-.++......|+ +|.++++++.+..|+++.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 21 3366777677777777787 8899999999999999865543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-09 Score=90.96 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHh
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL-LAR 524 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 524 (634)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++... .|+......+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 34444555555555555555554431 113445555555555556666666555555432 2222222211111 112
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.+...+|++.+++. ...| +...+..+...+...|++++|+..++++++.+|.. +.++..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22233466667666 3345 57888899999999999999999999999999875 56899999999999999999999
Q ss_pred HHHHHh
Q 036704 601 MGSMKE 606 (634)
Q Consensus 601 ~~~~~~ 606 (634)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=106.13 Aligned_cols=160 Identities=11% Similarity=-0.014 Sum_probs=123.1
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 423 CGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.|++++|.+.+++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 346678889999999999999999999999874 335788888999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---GNVDVGKRAAENILKID 574 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 574 (634)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2335778888999999999999999999988 3334 677888999999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 036704 575 PTNSAALVLLC 585 (634)
Q Consensus 575 p~~~~~~~~l~ 585 (634)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=90.63 Aligned_cols=123 Identities=11% Similarity=0.049 Sum_probs=102.5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
|...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3455677889999999988876 33443 445667889999999999999999998 5555 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL-MGSMKER 607 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 607 (634)
++++|+..|+++++.+|+++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876665 5877663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=84.62 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|++.|++. ...| ++..|..+..+|...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445667778888889999999999888 4444 68889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 036704 590 SSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~g 608 (634)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988743
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=87.40 Aligned_cols=161 Identities=9% Similarity=-0.040 Sum_probs=123.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGV-RPNH----VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRS 516 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 516 (634)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887531 2221 12334666777888999999999999863122223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-----AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN------SAAL 581 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 581 (634)
.+...|...|++++|.+.++++ ..+.+ ..++..++..|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999887 11112 3478899999999999999999999999855432 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGK-WEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 606 (634)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.4e-08 Score=90.99 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=149.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAA-MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
++++|.+++++..+... .. +.+ .++++.|...+..+ ...|...|++++|...|
T Consensus 6 ~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 56677777766554211 10 111 35666666665543 45677788888888887
Q ss_pred hcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhcccCCHHHHHHHH
Q 036704 434 NFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV---RPN--HVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 434 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.+..+ .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|...|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 76542 11 33678888889999999999999988764311 122 4567788888888 9999999999
Q ss_pred HHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 500 RIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-A---FDDD----IVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 500 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
++......-..+ ..++..+...|.+.|++++|++.|++. . ..++ ...+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754211111 456778899999999999999999987 1 1122 236667777788889999999999
Q ss_pred HHHHhcCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 036704 568 ENILKIDPTNSAA-----LVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 568 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 600 (634)
++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999 88875432 44455545 56777666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-08 Score=86.69 Aligned_cols=179 Identities=7% Similarity=-0.021 Sum_probs=118.2
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 036704 379 NDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGE 458 (634)
Q Consensus 379 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 458 (634)
......+...|++++|...+++..+..+. +...+... ...... .........+..+|...|+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~~----------~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKNS----------EISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTTS----------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcchh----------hhhHHHHHHHHHHHHHCCCHH
Confidence 33444556677777777777777665422 11111110 000000 011122344788899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCC--hHHHHHHH
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGR--VHEAEDFI 535 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~ 535 (634)
+|+..|++..+.. +-+...+..+...+...|++++|...|+++.+. .| +...+..+..+|...|+ .+.+...+
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999998874 235788888999999999999999999999864 44 56777788887766553 44556666
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 536 NQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 536 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
+... ..|....+.....++...|++++|+..|+++++..|++
T Consensus 148 ~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6653 22233345556777778899999999999999999963
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.4e-08 Score=85.47 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=81.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHG 558 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 558 (634)
.+...+...|++++|...+++. +.|+...+..+..+|.+.|++++|++.+++. .. +.+...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444555566666666665544 2345556666666666666666666666665 22 235566777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 559 NVDVGKRAAENILKIDPTNS----------------AALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++++|+..++++++..|.+. .++..++.+|.+.|++++|.+.++++.+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777776666 777777777788888888887777776543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-08 Score=78.93 Aligned_cols=92 Identities=9% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+......|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 344455555555666665555554 2222 45555555666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHh
Q 036704 593 KWEEVARLMGSMKE 606 (634)
Q Consensus 593 ~~~~A~~~~~~~~~ 606 (634)
++++|.+.+++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-08 Score=78.93 Aligned_cols=113 Identities=17% Similarity=0.053 Sum_probs=94.0
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 473 RPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 473 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
.|+ ...+......+.+.|++++|++.|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444 355666777888889999999999988854 2346778888889999999999999999887 4444 6789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
++.++...|++++|++.|+++++++|+++.++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999998888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=84.31 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445556666666666666666665 2223 56666666666777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 036704 590 SSGKWEEVARLMGSMKE 606 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~ 606 (634)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766655
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-07 Score=88.93 Aligned_cols=163 Identities=7% Similarity=-0.091 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC--CCC--hh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI--IPT--RE 513 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 513 (634)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888888887776532211 122334555667778888888888887743111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM----AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------NS 578 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 578 (634)
+++.+...|...|++++|.+.+++. ...|+ ..++..++..|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888899999998888876 11222 257888899999999999999999998875432 25
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036704 579 AALVLLCNIYASSGKWEEV-ARLMGSMK 605 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 605 (634)
.++..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788899999999999999 77777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-08 Score=100.05 Aligned_cols=146 Identities=10% Similarity=-0.075 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFR 465 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 465 (634)
|++++|...++++.+.... +...+..+...+...|++++|.+.+++..+ .+...+..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555555544443322 334444444555555555555555544332 223344444455555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036704 466 RMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRVHEAEDFINQM 538 (634)
Q Consensus 466 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 538 (634)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 544432 112444444445555555555555555554432 112233444444455444 5555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-07 Score=83.11 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=159.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--ChHHHHHHHhcCCC---CChhhHHHHHHHH----Hhc---CC
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG--SLGSARELFNFMED---PDVVSWSSLIVGY----AQF---GC 456 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 456 (634)
...++|....+.++..++. +...|+.--..+...| +++++++.++.+.. .+...|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446788888888887755 5556676667777777 88999998888763 3344565544444 444 78
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHH--HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC------h
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVE--EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR------V 528 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 528 (634)
+++++.+++++.+.. +-|..+|..-...+.+.|.++ ++.+.++++.+. -.-+...|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999998874 336777776666667777777 888999988864 23466667666666666666 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV-DVGKRAAENILKID---PTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888877 3344 788898888888888874 44666777777765 8888999999999999999999999999
Q ss_pred HHHh
Q 036704 603 SMKE 606 (634)
Q Consensus 603 ~~~~ 606 (634)
++.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=100.17 Aligned_cols=189 Identities=9% Similarity=-0.032 Sum_probs=146.1
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhc
Q 036704 386 AAMASLEMGTQLHCYIM--------KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQF 454 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 454 (634)
...|++++|.+.++++. +.. +.+...+..+..++...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 433 23667888889999999999999999998873 4567888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
|++++|+..|++..+.. +-+...+..+..++...|++++ .+.|+++.+. -+.+...+..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874 2257888889999999999999 9999999864 233567888899999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCch
Q 036704 535 INQM-AFDDD-IVVWKSLLASCKTHGN-----VDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 535 ~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 579 (634)
|++. ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 66775 5677778888766554 23333444444444444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=80.73 Aligned_cols=128 Identities=12% Similarity=-0.007 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASC 554 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 554 (634)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. .. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44566667777888888888888887754 2335667777888888888888888888877 33 33677888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNI--YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 606 (634)
...|++++|...++++++..|.+..++..+..+ +.+.|++++|.+.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555544 8888999999999987653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=8.8e-06 Score=82.38 Aligned_cols=202 Identities=8% Similarity=-0.018 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHH-HHHHhcC
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSA-RELFNFM 436 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 436 (634)
.+..+|++..... +.+...|...+.-+...|+++.|..++++.... +.+...+... +...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHH
Confidence 3445666655532 445667777777778889999999999999988 3344333322 221111111 1222211
Q ss_pred C--C----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCCHHHHHHHHHHHH
Q 036704 437 E--D----------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VGLVEEGLQLYRIMQ 503 (634)
Q Consensus 437 ~--~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 503 (634)
. + .....|...+....+.++.+.|..+|++. .. ..++...|...+..-.. .++++.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 0 11234666666666778889999999988 32 12244444332222222 336899999999888
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 504 NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
+.++ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7632 234456667777788899999999999983 2567788888777788999988888888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-07 Score=86.06 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=109.6
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHH-H
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSL-I 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~ 448 (634)
+.+...+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344456666777778888888888888888877654 566777778888888888888888888764 544322222 2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
..+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556666777777777777663 23466777777777777888888887777775411111245566667777777777
Q ss_pred HHHHHHHHh
Q 036704 529 HEAEDFINQ 537 (634)
Q Consensus 529 ~~A~~~~~~ 537 (634)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-07 Score=81.93 Aligned_cols=185 Identities=10% Similarity=-0.056 Sum_probs=125.6
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----hHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----SWS 445 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 445 (634)
+...+-.+...+...|++++|...|+++.+..+.. ....+..+..+|.+.|++++|...|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999875432 245777888999999999999999998763 4332 344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 446 SLIVGYAQ------------------FGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 446 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
.+..++.. .|+.++|...|+++.+. .|+. ........ ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555544 34556666666666554 2332 11111000 000000000
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.....+...|.+.|++++|+..|+++ ...|+ ...+..++.++.+.|+.++|++.++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01124567888999999999999988 33343 357888999999999999999999999998887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-07 Score=83.02 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=115.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVG----------------VLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 344556667777777777776665 333 344444 888899999999999999999864 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN--VDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.+...+..+..+|...|++++|++.|++. ...| +...+..+...|...|+ .+.+...++++....| ....+...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 36778889999999999999999999998 4445 67889999988866654 4556666666654333 223566678
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 036704 586 NIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.++...|++++|...|++..+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888999999999999997643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-07 Score=80.37 Aligned_cols=172 Identities=10% Similarity=-0.074 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-PDVVSWSSLIVGYAQFG----CGEEALKLFRRMR 468 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 468 (634)
|...|++..+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 555666666666667777777777776543 445566666666666 5 7888888888887
Q ss_pred hCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 036704 469 SSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPT---RERRSCVVDLLAR----AGRVHEAEDFINQ 537 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 537 (634)
+.| ++..+..+...|.. .+++++|.+.|++..+ ..|+ ...+..|...|.. .+++++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56667777777776 7788888888888774 3342 5667778888877 7788999998888
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 036704 538 M-AFDDDIVVWKSLLASCKTH-G-----NVDVGKRAAENILKIDP 575 (634)
Q Consensus 538 ~-~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 575 (634)
. ...+++..+..+...|... | +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3335666777788777653 3 88999999988877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=74.14 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++++|..+++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666777777778888888888777754 2335566777777888888888888888776 2 23366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+...|++++|...++++++..|.++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988988888888887776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=75.85 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|.+.+++. ... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666666666677777777777766632 2224556666666777777777777777666 222 356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
+...|++++|+..++++++..|.+..++..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888887776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=75.59 Aligned_cols=117 Identities=10% Similarity=-0.059 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++. ...| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455666777777888888888888887754 2335667777888888888888888888877 3333 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
+...|++++|...++++++..|.++.++..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998888875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=79.58 Aligned_cols=154 Identities=11% Similarity=-0.032 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hccc
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHV 489 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~ 489 (634)
......+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... |++......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3445556666777777777776663 344566666777777777777777777765542 333322221111 1122
Q ss_pred CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD---IVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~ 564 (634)
+....|...+++..+. .| +...+..+..++...|++++|.+.++++ ...|+ ...+..++..+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223456667776643 33 4666777777788888888888888776 44443 457777777888888888888
Q ss_pred HHHHHHHh
Q 036704 565 RAAENILK 572 (634)
Q Consensus 565 ~~~~~~~~ 572 (634)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=8e-08 Score=83.06 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=55.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCCh--H
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL-LARAGRV--H 529 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 529 (634)
..|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3444555555555554432 2234445555555555555555555555554321 1133344444444 4444554 5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+|.+.+++. ...| +...+..+...+...|++++|...++++++..|.++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 555555544 2222 344444455555555555555555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-05 Score=75.17 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=170.9
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----hhc---CC
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA--SLEMGTQLHCYIMKTGLALDVFVMNGLMDMY----VKC---GS 425 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 425 (634)
..++|+++.+.++... +-+...++.--..+...+ ++++++..++.+....++ +..+|+.-...+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3345666666665542 334456677777777777 999999999999988766 455555443333 444 78
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC------HHH
Q 036704 426 LGSARELFNFMED---PDVVSWSSLIVGYAQFGCGE--EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL------VEE 494 (634)
Q Consensus 426 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 494 (634)
+++++.+++.+.+ .+...|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999998874 56667777777788888888 999999999988633 67777766666666665 889
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE-AEDFINQM-AF----DDDIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+++.++++... .+-|...|+.+...+.+.|+..+ +.++.+++ .. ..++..+..++.+|.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988864 34477888888888888888555 55677776 22 3478899999999999999999999999
Q ss_pred HHHh-cCCCCchhHHHHHH
Q 036704 569 NILK-IDPTNSAALVLLCN 586 (634)
Q Consensus 569 ~~~~-~~p~~~~~~~~l~~ 586 (634)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 79998888877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=77.45 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555555555555 2222 455555556666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHh
Q 036704 594 WEEVARLMGSMKE 606 (634)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (634)
+++|.+.+++..+
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=90.36 Aligned_cols=196 Identities=8% Similarity=-0.038 Sum_probs=150.9
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK-CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFR 465 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 465 (634)
..|++++|.+++++..+.... + +.+ .++++.|...|+. ....|...|++++|...+.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 467889999999988765322 1 122 5788888887664 4667889999999999999
Q ss_pred HHHhCCC---CC--CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q 036704 466 RMRSSGV---RP--NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFIN 536 (634)
Q Consensus 466 ~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (634)
+..+... .+ -..+|..+...|...|++++|...+++....+.-..+ ..++..+..+|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8765421 11 1457888889999999999999999987754211111 3567788889988 99999999999
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHH
Q 036704 537 QM----AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 537 ~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+. +...+ ..++..+...|...|++++|+..++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 11111 45788899999999999999999999999766543 366777888889999999999999
Q ss_pred HHH
Q 036704 603 SMK 605 (634)
Q Consensus 603 ~~~ 605 (634)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-05 Score=80.59 Aligned_cols=202 Identities=10% Similarity=-0.018 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-PDVVSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
.+.+..+|++++...+. +...|...+..+.+.|+.+.|..++++... |+...... .|....+.++. ++.+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 45677889888876543 577888888888899999999999987643 33322211 23222221221 222222
Q ss_pred CC---------CCC---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CChHHHHHHHH
Q 036704 470 SG---------VRP---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA-GRVHEAEDFIN 536 (634)
Q Consensus 470 ~~---------~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 536 (634)
.- ..+ ....|...+....+.++.+.|..+|+++ .. . ..+...|...+..-... ++.+.|.++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 011 1245666666666788899999999998 32 1 23444554333333333 36999999999
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 537 QM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 537 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.. ..+.++..|...+......|+.+.|..+|+++ +.+...|...+..-...|+.+.+..++++..+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87 33234556677777778899999999999998 34667888888877788999999998887774
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=75.24 Aligned_cols=94 Identities=7% Similarity=-0.002 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++.+|.++.++..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666667777777777777766 3233 5667777777777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 036704 592 GKWEEVARLMGSMKER 607 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~ 607 (634)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 7777777777777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=78.62 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCH
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLV 492 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 492 (634)
+..+...+...|++++|...|+...+++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566666777777777776666666666666666777777777777776666553 22455666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 493 EEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD-DIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 493 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
++|.+.++++.+. .|+..... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666642 11110000 00000 01222 23567777778888888888888888888
Q ss_pred hcCCCC
Q 036704 572 KIDPTN 577 (634)
Q Consensus 572 ~~~p~~ 577 (634)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=89.88 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|+++++..|.++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356778888899999999999999887 3344 68899999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 036704 590 SSGKWEEV-ARLMGSMK 605 (634)
Q Consensus 590 ~~g~~~~A-~~~~~~~~ 605 (634)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44556553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-07 Score=72.68 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCN 586 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 586 (634)
+...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455667778888888888888888877 22 336778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 036704 587 IYASS-GKWEEVARLMGSMKERGV 609 (634)
Q Consensus 587 ~~~~~-g~~~~A~~~~~~~~~~g~ 609 (634)
++.+. |++++|.+.++++.+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999987554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=74.76 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445677888999999999999988 4444 7889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036704 592 GKWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~g 608 (634)
|++++|...++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-06 Score=78.98 Aligned_cols=201 Identities=8% Similarity=-0.064 Sum_probs=138.4
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHhhcCChHHHHHHHhcCCC-
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFV---MNGLMDMYVKCGSLGSARELFNFMED- 438 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~- 438 (634)
+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|...++...+
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444444456777777666665543321 1122222222222 23346778889999999999987653
Q ss_pred ----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 439 ----PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 439 ----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 12334666677788999999999999874322 22 236888999999999999999999998853
Q ss_pred hC----CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 036704 506 YG----IIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDD-IVVWKSLLASCKTHGN-VDVGKRAAENIL 571 (634)
Q Consensus 506 ~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 571 (634)
.. ..+ ...++..+...|.+.|++++|.+.+++. +..+. ..++..++.+|...|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 21 111 1346778899999999999999999877 22222 6789999999999995 699999999987
Q ss_pred h
Q 036704 572 K 572 (634)
Q Consensus 572 ~ 572 (634)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=88.68 Aligned_cols=192 Identities=9% Similarity=-0.021 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFME--DP-DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455556666667777777777776654 23 45567777777778888888888888877653 22466777777788
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
...|++++|...|+++.+...-.+. .+...+....+....... .........++......+... ..|++++|++.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 8888888888888777653111110 111111111111111111 112222333344444444332 36889999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASS-GKWEEVARLMGSMKER 607 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 607 (634)
++++++.+|.+......+...+.+. +.+++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998888888887777766 7789999999988753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=73.62 Aligned_cols=96 Identities=9% Similarity=0.018 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555556666666666666666655 2222 4556666666666666666666666666666666666666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036704 589 ASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~ 606 (634)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=74.62 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=89.0
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 473 RPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 473 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
.|+ ...+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|++.|++. ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 343 556777888899999999999999999864 2336778889999999999999999999998 4444 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+..+|...|++++|+..|+++++..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-07 Score=77.32 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4667888888999999999999999999864 2336778889999999999999999999988 4444 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+|...|++++|+..++++++..|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-07 Score=75.39 Aligned_cols=93 Identities=9% Similarity=0.066 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA-------ALVLL 584 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 584 (634)
.+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.+++++++.|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777788888888888888876 4344 5777888888888888888888888888887776543 56677
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036704 585 CNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.++...|++++|++.+++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888888765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-07 Score=76.34 Aligned_cols=117 Identities=7% Similarity=-0.107 Sum_probs=92.5
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036704 463 LFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF 540 (634)
Q Consensus 463 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 540 (634)
.++++... .| +...+..+...+...|++++|...|+.+... -+.+...+..+..+|...|++++|++.|++. ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 34 3556677778888999999999999998864 2336777888889999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 541 DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 541 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.| ++..+..+..+|...|++++|+..|+++++..|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 67788899999999999999999999999999988765433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-06 Score=79.21 Aligned_cols=161 Identities=7% Similarity=-0.072 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--HH
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMED--P-DV------VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR---PN--HV 477 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 477 (634)
.+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556777888899998888875431 1 11 12344556677888999999999998764221 22 45
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DI 544 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~ 544 (634)
+++.+...|...|++++|...++++.......|+ ..++..+...|.+.|++++|.+.+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988732211222 257788899999999999999999886 1111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVG-KRAAENILK 572 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 572 (634)
.++..++.+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6888999999999999999 787888775
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.2e-07 Score=69.96 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+...|++++|.+.+++. ... .+...+..++..+...|++++|...++++++..|.++.++..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444555555555555544 111 234455555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 036704 593 KWEEVARLMGSMKE 606 (634)
Q Consensus 593 ~~~~A~~~~~~~~~ 606 (634)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-07 Score=72.04 Aligned_cols=98 Identities=7% Similarity=0.033 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++..|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999998 5455 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036704 589 ASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~g 608 (634)
.+.|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999988753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=7.6e-07 Score=78.44 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677888888899999999988887 3333 678899999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 036704 591 SGKWEEVA-RLMGSMKERG 608 (634)
Q Consensus 591 ~g~~~~A~-~~~~~~~~~g 608 (634)
.|+.+++. ..++.+...|
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5566665444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.3e-07 Score=82.19 Aligned_cols=191 Identities=10% Similarity=-0.047 Sum_probs=114.6
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHhhcCChHHHHHHHhcCCCCCh------------------
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGL-------MDMYVKCGSLGSARELFNFMEDPDV------------------ 441 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 441 (634)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..-.+..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578888888888888887755 45556555 3444444444444444443332000
Q ss_pred ------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---h
Q 036704 442 ------VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---R 512 (634)
Q Consensus 442 ------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 512 (634)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... ..++ .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence 112334556677777777777777766543 4433444455566677777777777764432 1111 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM--AFD-DD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
..+..+..++...|++++|++.|++. +.. |. ...+.....++.+.|+.++|...|+++...+|. +.+...|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 24556667777777777777777776 111 32 335666666777777777777777777777776 5544444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=75.30 Aligned_cols=153 Identities=10% Similarity=-0.035 Sum_probs=83.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC---CCC-ChhHHHHHHHHHHhcCCh
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG---IIP-TRERRSCVVDLLARAGRV 528 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~ 528 (634)
..|++++|.+.++.+... ......++..+...+...|++++|...+++...... ..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 112344555555556666666666666665544211 111 233455556666666666
Q ss_pred HHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----chhHHHHHHHHHhcCC
Q 036704 529 HEAEDFINQM----AFDD-D----IVVWKSLLASCKTHGNVDVGKRAAENILKIDP--TN----SAALVLLCNIYASSGK 593 (634)
Q Consensus 529 ~~A~~~~~~~----~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 593 (634)
++|.+.+++. ...+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666654 1111 2 23566666777777777777777777765321 11 2235667777777777
Q ss_pred hHHHHHHHHHHHh
Q 036704 594 WEEVARLMGSMKE 606 (634)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (634)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=68.29 Aligned_cols=111 Identities=17% Similarity=0.010 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445566667777778888888888877753 2335666777777888888888888888776 3333 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...|++++|...++++++..|.++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999988888776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=69.94 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+...|++++|.+.++++ . .+.+..++..++..+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 466778889999999999999999998 3 33467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 036704 590 SSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~g 608 (634)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=71.98 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|++.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4445555555556666666666666555 23343 344455555555555555555555554 2222 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
+..++...|++++|...++++++..|.+..++..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555555555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=78.30 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=138.5
Q ss_pred hcCChHHHHHHHhcCCC--CC-hhhHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------
Q 036704 422 KCGSLGSARELFNFMED--PD-VVSWSSL-------IVGYAQFGCGEEALKLFRRMRSSGVRPN---------------- 475 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 475 (634)
..++...|.+.|.++.+ |+ ...|..+ ..++...++..+++..+++-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999874 43 4578777 4566666666666666655544 2222
Q ss_pred ------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 036704 476 ------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDI----V 545 (634)
Q Consensus 476 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 545 (634)
......+...+...|++++|.++|+.+.. ..|+....-.+...+.+.+++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234466778899999999999998874 3454335556677889999999999999988444433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKID--PT-NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.+..+..++...|++++|+..|+++.... |. .+.+....+.++.++|+.++|...|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888999999999999999999998643 55 45578899999999999999999999998754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=70.28 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+...|...|++++|+..++++++..|.++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35667778888889999999999999987 66676 57888888889999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 036704 585 CNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-07 Score=73.62 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD-------------DIVVWKSLLASCKTHGNVDVGKRAAENILKI-------DP 575 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p 575 (634)
.....+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3444445555555555555554 1111 1338888888899999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 576 TNSAAL----VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 576 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++.+| +..+.++...|++++|+..|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999 9999999999999999999998875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=75.68 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=101.2
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS-CKTHGNV-- 560 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~~-- 560 (634)
+...|++++|...+++.... .+.+...+..+...|...|++++|.+.+++. ...| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999998864 2346778889999999999999999999988 3333 67788888888 7789998
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
++|+..++++++..|.++.++..++.+|...|++++|...++++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999987653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-06 Score=68.36 Aligned_cols=112 Identities=10% Similarity=-0.102 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+......+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345566667777788888888888887753 2335677778888888888888888888877 3344 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKID------PTNSAALVLLCNIYA 589 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 589 (634)
+...|++++|+..++++++.. |.+..+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999988 877777777765543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=71.78 Aligned_cols=108 Identities=8% Similarity=-0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|+..|++. ...| ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445566667778888899999888888754 2336677778888888999999999998887 3334 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
+...|++++|+..++++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 99999999999999999999998887655543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=69.33 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|++++|+..++++++..|.++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456777888999999999999999988 33 346888999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036704 589 ASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~g 608 (634)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-05 Score=73.76 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhc-C-ChHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLIVGYAQF-G-CGEEALK 462 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~~ 462 (634)
+..++|.++++.++..++. +..+|+.--..+...| ++++++++++.+.. .+...|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3445788888888877755 5556666666666677 58888888887763 3445666666666665 6 7888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHH--------HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-------
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVE--------EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR------- 527 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 527 (634)
+++++.+... -|...|+.-...+.+.|.++ ++++.++++.+. ..-+...|+....++.+.++
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 8888887642 25666655444444444444 788888888864 23466777777777777765
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCch
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV--------------------DVGKRAAENILKID------PTNSA 579 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 579 (634)
++++++.++++ ...| |...|+.+...+.+.|.. ....+....+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 67888888777 3344 777888877777766653 23333333333322 56788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..++.+|.+.|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=75.66 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=98.7
Q ss_pred hcCChHHHHH---HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHH
Q 036704 422 KCGSLGSARE---LFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 422 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 493 (634)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 443322234456667777777777777777777776541 1122 2455677777788888888
Q ss_pred HHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 036704 494 EGLQLYRIMQNEYGIIP-T----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKTHGNV 560 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~ 560 (634)
+|...+++......-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887665422122 2 334667778888888888888888776 11122 23467788888899999
Q ss_pred HHHHHHHHHHHhc
Q 036704 561 DVGKRAAENILKI 573 (634)
Q Consensus 561 ~~a~~~~~~~~~~ 573 (634)
++|...++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-06 Score=71.90 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|++.|++. ...| +...+..+..+|...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555666666667777777766665 2233 55666666666666777777777777777777766666777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 036704 590 SSGKWEEVARLMGSMKE 606 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~ 606 (634)
+.|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777766666655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.0002 Score=67.54 Aligned_cols=228 Identities=13% Similarity=0.017 Sum_probs=160.8
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-C-ChHHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA-SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKC-G-SLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 431 (634)
..++|+++++.++... +-+...++.--..+...+ +++++..+++.+....++ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3445666666666543 334456666666666777 599999999999988776 677777766666666 6 8899999
Q ss_pred HHhcCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC-------HH
Q 036704 432 LFNFMEDP---DVVSWSSLIVGYAQFGCGE--------EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL-------VE 493 (634)
Q Consensus 432 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~ 493 (634)
+++.+.+. +...|+--...+.+.|.++ ++++.++++.+..+ -|...|+.-...+.+.+. ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 99998864 4456665555555555555 89999999998753 377788877777777775 68
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC-------CCCHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV--------------------HEAEDFINQM-AF-------DDDIV 545 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~~~~~ 545 (634)
++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++ .. .+.+.
T Consensus 226 eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 226 DELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 888888888853 344677777777777776654 3444444444 22 35788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENIL-KIDPTNSAALVLLCNI 587 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 587 (634)
.+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999999999987 5788777777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=70.37 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=46.4
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTR---ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-D---IVVWKSLLAS 553 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~---~~~~~~l~~~ 553 (634)
+...+...|++++|...|+.+.+... .+. ..+..+..++.+.|++++|.+.+++. ...| + ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555554311 111 23444445555555555555555544 1112 1 3344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+...|++++|...++++++..|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 5555555555555555555555444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=84.44 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
..|..+...+.+.|++++|+..|++..+.. |+...+ . .+...+ .... ....+..+..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA-SESF--------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH-HHHH--------HHHHHHHHHHH
Confidence 356666666777777777777777766532 211000 0 000000 0000 13567788889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 3334 678899999999999999999999999999999999999999999999999998874
Q ss_pred -HHHHHH
Q 036704 600 -LMGSMK 605 (634)
Q Consensus 600 -~~~~~~ 605 (634)
.+++|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 455554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.6e-06 Score=69.72 Aligned_cols=127 Identities=9% Similarity=-0.113 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++.... .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 46667777888888888888888887763 335777888888888889999999988888864 234566778888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWK--SLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
...|++++|.+.+++. ...| +...+. ..+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999988887 3333 444553 344447778899999988887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-07 Score=71.85 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 525 AGRVHEAEDFINQM-AF---DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
.|++++|+..|++. .. .| +...+..+..+|...|++++|+..++++++..|+++.++..++.++.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666665 33 13 344666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 036704 600 LMGSMKE 606 (634)
Q Consensus 600 ~~~~~~~ 606 (634)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=68.84 Aligned_cols=113 Identities=8% Similarity=-0.132 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036704 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLL 551 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 551 (634)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35677778888888888888888888888764 2335677788888888889999998888887 3334 677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPT-----NSAALVLLCNIY 588 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 588 (634)
.++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 555555554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=72.61 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-----CCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-----IIP-----------TRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
...+......+.+.|++++|...|.+...... -.| +...+..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455556666667777777777766654200 001 1233444444444455555555444444
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 539 AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 539 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
...| +...|..++.+|...|++++|+..++++++.+|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2222 344444444444455555555555555555444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=68.78 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-------SAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 583 (634)
..+..+...+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556667777778888888877776 2 23356777888888888888888888888888877765 778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++.++.+.|++++|.+.++++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=87.17 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=97.6
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 560 (634)
...+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999988864 2335778888999999999999999999988 4444 678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNI--YASSGKWEEVARLMG 602 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 602 (634)
++|++.++++++..|+++.++..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 888999999999988
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.7e-06 Score=69.68 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=82.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IV 545 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 545 (634)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432111111 124555666666677777777766665 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDP------TNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+..+...+...|++++|...++++++..+ ....++..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667778888888999999998888876432 1345778889999999999999999988765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-06 Score=77.10 Aligned_cols=111 Identities=6% Similarity=-0.174 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777778888888888888888888864 2236677788888888888888888888887 5455 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
++...|++++|+..++++++..|+++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 88888888888888888888888765444434333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=82.94 Aligned_cols=147 Identities=10% Similarity=-0.002 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...+..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 35666677777888888888888887765 344321 22334444433222 1 1367788899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCChHHHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-SSGKWEEVA 598 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 598 (634)
|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++..|.++.++..+..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 4444 67899999999999999999999999999999999999999988744 456788888
Q ss_pred HHHHHHHhCC
Q 036704 599 RLMGSMKERG 608 (634)
Q Consensus 599 ~~~~~~~~~g 608 (634)
..+++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 9998887654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-06 Score=63.68 Aligned_cols=101 Identities=13% Similarity=-0.018 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLL 551 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~ 551 (634)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 445566666777777888888877777753 2334566777777788888888888888776 3333 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 036704 552 ASCKTH-GNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 552 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888889988888888888754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=9.5e-06 Score=65.37 Aligned_cols=109 Identities=6% Similarity=-0.050 Sum_probs=69.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC----HHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A----FDDD----IVVWK 548 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~~~----~~~~~ 548 (634)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++. . ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555555666666666666666543 1234455556666666666666666666655 1 1122 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.++..+...|++++|...++++++..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 888888888999999999998888887 5666666655543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-05 Score=79.37 Aligned_cols=162 Identities=6% Similarity=-0.081 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCC-ChhH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPNH----VTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIP-TRER 514 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 514 (634)
+..+...|...|++++|.+++..+...-- .++. .+.+.+-..+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777776666543210 1111 122233334445677777777776654321 2222 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----ch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-----A--FDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID---PTN----SA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 579 (634)
+..+...|...|++++|.++++++ . .++ ...++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777788888887777765 1 112 24467777777888888888888887776532 222 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55566667777788888877766654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-05 Score=62.89 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DI---VVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNI 587 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 587 (634)
..+...+...|++++|.+.|++. ...| +. ..+..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567778889999999998887 2223 22 577788888889999999999999999988888 6778889999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 588 YASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.+.|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999998887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.2e-06 Score=79.75 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..++++++..|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3566778889999999999999999988 5555 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 036704 589 ASSGKWEEVARL 600 (634)
Q Consensus 589 ~~~g~~~~A~~~ 600 (634)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-06 Score=82.24 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=93.7
Q ss_pred hcccCCHHHHHHHHHHHHHHhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYG--IIP----TRERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVVWKS 549 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~ 549 (634)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466788888877777664321 112 2456777888888888888888887775 34444 458899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 550 LLASCKTHGNVDVGKRAAENILK-----IDPTNSA---ALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
|+..|...|++++|+.+++++++ ..|+++. ....+..++.++|++++|+.++++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886 5677655 445778888899999999999999987543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=9.1e-06 Score=64.64 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=72.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
+..+...+.+.|++++|...++++.+. .+.+...+..+..++...|++++|+..+++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445556677888888888888888754 2335667777888888888888888888887 4444 57788888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 036704 557 HGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.|++++|+..++++++..|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=70.18 Aligned_cols=94 Identities=18% Similarity=0.050 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-D----------------IVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
.+..+...+.+.|++++|++.|++. ...| + ...+..+..+|...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555666666666666666655 1111 1 36888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 576 TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 576 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.++.++..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00035 Score=65.59 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=93.9
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC-HHHHHHHH
Q 036704 426 LGSARELFNFMED---PDVVSWSSLIVGYAQFG--CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL-VEEGLQLY 499 (634)
Q Consensus 426 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 499 (634)
+++++.+++.+.. .+..+|+.-...+...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554432 23344554444444444 2556666666666553 2244444444444444454 35666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARA--------------GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH------ 557 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~------ 557 (634)
+.+... .+-+...|+.....+.+. +.++++++++.+. ...| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 666543 122444444333333332 3456666666665 2233 566665555544443
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCChHHHHHHHHHHHh
Q 036704 558 -----GNVDVGKRAAENILKIDPTNSAALVLLCNIY---ASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 558 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 606 (634)
+.++++++.++++++..|++...+..++... ...|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3467777778888888887755544443322 135667777777777764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.3e-05 Score=74.13 Aligned_cols=130 Identities=8% Similarity=-0.061 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
...+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++.+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34566677777788888888888888777532211 477888888889999999999999988864
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 036704 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG-KRAAENILK 572 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 572 (634)
.+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|+.++| ...+++++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2336777888889999999999999999887 4444 577888888889899998888 456666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=61.74 Aligned_cols=104 Identities=7% Similarity=-0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.+++..+...-.+. .+..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~----- 82 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--DYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--hhHHH-----
Confidence 3444455555555555555555555432 112444445555555555555555555544422000000 00000
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 524 RAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..++..++.++...|++++|++.|+++++..|
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 12455566666666777777777777666655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=68.47 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN------SAALV 582 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 582 (634)
+...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677788888889999999988887 3334 67888899999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~ 603 (634)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00087 Score=62.95 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=152.9
Q ss_pred HhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 036704 356 AGELFRLFSLMLASQTKPDH-ITFNDVMGACAAMAS----------LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (634)
.++|+++.+.+... .|+. ..++.--..+...+. ++++..+++.+....++ +..+|+.-...+.+.+
T Consensus 46 s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccC
Confidence 34566666666553 3333 334433333332222 67888899998887766 6777777666666777
Q ss_pred --ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc---------
Q 036704 425 --SLGSARELFNFMED---PDVVSWSSLIVGYAQFGC-GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV--------- 489 (634)
Q Consensus 425 --~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 489 (634)
.+++++.+++.+.+ .|...|+--..++...|. ++++++.++++.+..+ -|...|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 48899999998874 556677777777777787 5899999999998753 3666666555444443
Q ss_pred -----CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCH-HHHHHHH
Q 036704 490 -----GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA-----------GRVHEAEDFINQM-AFDDDI-VVWKSLL 551 (634)
Q Consensus 490 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~-~~~~~l~ 551 (634)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||. ..+..++
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 4578888888888853 233666676555555554 4578899999888 555653 2332222
Q ss_pred HH---HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 552 AS---CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 552 ~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.. ....|..++....+.++.+++|....-|..+...+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 21 224578889999999999999998888887765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.3e-06 Score=68.93 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AF------------------DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+......+.+.|++++|++.|++. .. .| +...+..+..+|...|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445667778888888888888876 22 12 23577888888888888888888888888888
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|.++.+|..++.+|...|++++|...+++..+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 888888888888888888888888888887764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=60.58 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+..++.+|...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67788888999999999999999999999999999999999999999999999999999887753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.2e-05 Score=75.40 Aligned_cols=159 Identities=5% Similarity=-0.027 Sum_probs=119.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN----------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 511 (634)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888876532211 124677889999999999999999988765333333
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 036704 512 R----ERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI------ 573 (634)
Q Consensus 512 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 573 (634)
. .+.+.+...+...|++++|.++++.. +..+ -..++..++..+...|++++|...++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334445556778999999998876 2233 2567888999999999999999999998763
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 574 DPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 574 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222455888999999999999999999998875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=62.86 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 531 AEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 531 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
|++.+++. ...| +...+..+...|...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2233 4555566666666666666666666666666666666666666666666666666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6.2e-06 Score=78.78 Aligned_cols=217 Identities=10% Similarity=0.097 Sum_probs=160.2
Q ss_pred cccccccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 036704 8 ICHLPRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLI 87 (634)
Q Consensus 8 ~~~l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 87 (634)
.+..|.+.++|+.++...|++.+|++.| +...||..|. .++....+.|.+++-+..+.-.++. .- ++..=+.|+
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~-eVi~~A~~~~~~edLv~yL~MaRk~-~k--e~~IDteLi 123 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYM-EVVQAANTSGNWEELVKYLQMARKK-AR--ESYVETELI 123 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSS-HHHHHTTTSSCCTTHHHHHHTTSTT-CC--STTTTHHHH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHH-HHHHHHHhCCCHHHHHHHHHHHHHH-hc--ccccHHHHH
Confidence 4566888999999999999999998775 3455668888 8999999999999999999877764 33 444556889
Q ss_pred HHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC------------------------
Q 036704 88 SACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------------------------ 143 (634)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 143 (634)
-+|++.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+..
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999877666542 47777777888888889999999888887652
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHH
Q 036704 144 RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALI 223 (634)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 223 (634)
.++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++...+++..... -.....+++.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 3677888888889988888877655444432 222 2334566677888888888888776621 234567888888
Q ss_pred HHHHhcCChhHHHHHHhccCC
Q 036704 224 AMYTKFDRILDAWNVFSSIAR 244 (634)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~~~~ 244 (634)
-.|++- +.++..+.++....
T Consensus 271 ILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHHhc-CHHHHHHHHHHHHH
Confidence 888775 56666666655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-05 Score=66.35 Aligned_cols=132 Identities=14% Similarity=0.027 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RE 513 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 513 (634)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666667777777766665543111 11 135666667777777777777777776543211111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM----AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
.+..+...+...|++++|.+.+++. ...+ ....+..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566777778888888888887766 1111 23467778888899999999999999887643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.5e-06 Score=65.54 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHhCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGI-IP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 564 (634)
.|++++|+..|+++.+. +. .| +...+..+..+|...|++++|++.+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777778888777742 10 12 3556777888888888888888888887 3334 5778888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHH
Q 036704 565 RAAENILKIDPTNSAALV 582 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~~ 582 (634)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.2e-06 Score=67.62 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------CC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIP-----T-----RERRSCVVDLLARAGRVHEAEDFINQM-AF-------DD 542 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~ 542 (634)
.....+.+.|++++|...|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334445555666666666665553311100 1 226777778888888888888877776 44 77
Q ss_pred C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 543 D-IVVW----KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 543 ~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+ ...| .....++...|++++|+..|++++++.|.+......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5 5578 899999999999999999999999999998877666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=74.71 Aligned_cols=168 Identities=11% Similarity=-0.012 Sum_probs=129.3
Q ss_pred hHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC--
Q 036704 426 LGSARELFNFMED--P-DVVSWSSLIVGYAQFGC----------GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG-- 490 (634)
Q Consensus 426 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 490 (634)
.++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+... -+..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 4556666666653 3 33455555555555555 8899999999988742 26777877777777888
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG-RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---------- 557 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 557 (634)
+++++.+.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999974 2346777877777777888 899999999988 5555 788888888877663
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 558 ----GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 558 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
+.++++++.+++++..+|.+..+|..+.+++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=79.82 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHH
Q 036704 419 MYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEG 495 (634)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 495 (634)
.+.+.|++++|.+.+++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555666666666665432 234455666666666666666666666666552 12355555566666666666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 036704 496 LQLYRIMQNEYGIIPTRERRSCVVDL--LARAGRVHEAEDFIN 536 (634)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 536 (634)
.+.++++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554311 122233333333 555566666666555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-05 Score=57.68 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666777777777777777766 2223 56677777888888888888888888888888888888888877776
Q ss_pred hcC
Q 036704 590 SSG 592 (634)
Q Consensus 590 ~~g 592 (634)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=76.02 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD-DIVVWKSLLASC 554 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 554 (634)
...+..+...+.+.|++++|.+.|+++.+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3446666666777777777777777666420 000 0000111110 1223 456888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.+.|++++|+..++++++.+|+++.++..++.+|...|++++|++.++++.+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.7e-05 Score=55.81 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 541 DDDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888765555 799999999999999999999999999999999999999999999987654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.9e-05 Score=75.95 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCK 555 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 555 (634)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...+..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455677777888888888888888887743 333221 223344444443332 137888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 556 THGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.|++++|+..++++++.+|+++.++..++.+|...|++++|...|+++.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999887643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.8e-05 Score=60.12 Aligned_cols=112 Identities=4% Similarity=-0.076 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKR 565 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 565 (634)
+++++|.+.|++..+. + .|+.. |...|...+..++|.++|++.....++.....+...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3456666666666543 3 22222 555555666666666666666333566666677777766 677777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036704 566 AAENILKIDPTNSAALVLLCNIYAS----SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 609 (634)
.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777765 456777777777777 6788888888887777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.92 E-value=7.7e-05 Score=74.99 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
...|..+..+|.+.|++++|+..++++++.+|+++.+|..++.+|...|++++|...|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56888999999999999999999999999999999999999999999999999999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=66.16 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=66.6
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 524 RAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN----------VDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344566666666665 3333 56666666666666654 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 036704 592 G-----------KWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g-----------~~~~A~~~~~~~~~~g 608 (634)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.6e-05 Score=57.62 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=59.75 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR----------VHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
.+.+++|.+.++...+. -+.+...+..+..++...++ +++|+..|++. .+.| +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34455666666665543 12245555555555555544 45777777776 5555 56678888888876
Q ss_pred c-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 557 H-----------GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 557 ~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
. |++++|+..|+++++++|++......+-. .++|.++.-.+...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHSS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCcccccc
Confidence 6 48999999999999999998755444422 245556555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=53.21 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788889999999999999999999999999999999999999999999999999999988753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=73.73 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=72.1
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 036704 520 DLLARAGRVHEAEDFINQM---------AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAAL 581 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~ 581 (634)
..+...|++++|+.++++. ...|+ ..+++.++.+|...|++++|+.+++++++ ..|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999998876 23343 45889999999999999999999999886 44554 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|+.+|..+|++++|+.++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=67.92 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCC----------HHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGL----------VEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999987 454 5556655555556666 89999999999864 344677788777888
Q ss_pred HhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 036704 523 ARAG--RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG-NVDVGKRAAENILKIDPTNSAALVLLCNIYASS------ 591 (634)
Q Consensus 523 ~~~g--~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 591 (634)
.+.| +++++++.++++ ...| +..+|+.-..++...| .++++++.++++++.+|.+..+|+..+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 679999999999 4344 7889999999988999 899999999999999999999999999998874
Q ss_pred --------CChHHHHHHHHHHHhC
Q 036704 592 --------GKWEEVARLMGSMKER 607 (634)
Q Consensus 592 --------g~~~~A~~~~~~~~~~ 607 (634)
+.+++|++.++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678999999888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0001 Score=72.59 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+++.++.+|...|++++|+.+++++++ ..|++ ...++.|+.+|..+|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3555666666666666666666666554 22332 3355566666666666666666666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00055 Score=53.46 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
|...|++..+. .+.+...+..+...|...|++++|++.+++. ...| +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666531 2234566667777777777888887777776 3333 566778888888888888888888888888
Q ss_pred cCCC
Q 036704 573 IDPT 576 (634)
Q Consensus 573 ~~p~ 576 (634)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0023 Score=51.90 Aligned_cols=113 Identities=7% Similarity=-0.074 Sum_probs=93.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVH 529 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 529 (634)
.+++++|.++|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+......|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999987 44444 667788888899999999998864 356777788888887 89999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 036704 530 EAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 575 (634)
+|.++|++.....++.....+...|.. .++.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998444678889999999988 8999999999999988653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00024 Score=70.13 Aligned_cols=99 Identities=10% Similarity=-0.033 Sum_probs=51.8
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEY--GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVV 546 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~ 546 (634)
+..+.+.|++++|..++++..... -+.|+ ..+++.+..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444445566666666666655321 01111 234555556666666666666665554 22232 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhH
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILK-----IDPTNSAAL 581 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 581 (634)
++.++..|...|++++|+.+++++++ ..|+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 55566666666666666666666665 345555433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00025 Score=53.60 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
....+.+.|++++|++.+++. ...| +.. .+..+..++...|++++|+..++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888887 3334 566 88888888999999999999999999999988877633 445
Q ss_pred HHHHHHHHHH
Q 036704 595 EEVARLMGSM 604 (634)
Q Consensus 595 ~~A~~~~~~~ 604 (634)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666666544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00055 Score=51.68 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSA-ALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+..+...|++++|+..++++++..|.++. ++..++.+|...|++++|.+.+++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566788999999999999999999999999 99999999999999999999999998754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.33 E-value=2.1e-06 Score=82.00 Aligned_cols=200 Identities=6% Similarity=0.023 Sum_probs=103.3
Q ss_pred CcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 036704 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSG 193 (634)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 193 (634)
.+.+|..|..+....+++.+|+..|-+ ..|+..|..+|....+.|.+++-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 455677777777777777776665533 3455566777777777777777777766555442 233333456667777
Q ss_pred CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCC-C
Q 036704 194 LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEME-S 272 (634)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~-~ 272 (634)
.+++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..-.. +-..+.+.++-....+.-. .
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak-----LAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR-----LASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT-----TSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 77666555444 234444444555666666777666666655432111 0001111111000001111 1
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 334 (634)
.++.||-.+-.+|...+.+..|.-.--.+.-. | ..+..++.-|-..|.+++.+.+++
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46666777777777777666654443333211 1 112233444555555554444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00057 Score=51.79 Aligned_cols=66 Identities=8% Similarity=0.015 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+...+..+..+|...|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++..|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4556667777777777777777777776 3333 4567777888888888888888888887776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0017 Score=63.85 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 036704 488 HVGLVEEGLQLYRIMQNEY--GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVVWKSLL 551 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 551 (634)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3477888888887766532 12222 456778888888889998888888876 34454 45889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 036704 552 ASCKTHGNVDVGKRAAENILK-----IDPTNSAALV 582 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 582 (634)
..|...|++++|+.+++++++ ..|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999886 5677775443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.012 Score=55.43 Aligned_cols=137 Identities=9% Similarity=-0.060 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHH--HhcC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcc---cC--CHHHHH---HHHHHHHH
Q 036704 439 PDVVSWSSLIVGY--AQFG---CGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSH---VG--LVEEGL---QLYRIMQN 504 (634)
Q Consensus 439 ~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~g--~~~~a~---~~~~~~~~ 504 (634)
.+...|...+++. ...+ +..+|..+|++.++. .|+ ...+..+..++.. .+ ...... ..++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3455566655543 3333 346788888888876 555 3444444433320 00 000111 11111110
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
....+.+..++..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011334444444444444445555555555555 223444444455555555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0033 Score=62.04 Aligned_cols=87 Identities=7% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHhcCChHHHHHHHHhC------CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 036704 520 DLLARAGRVHEAEDFINQM------AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAAL 581 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~------~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~ 581 (634)
..+.+.|++++|++++++. -..| ...+++.++.+|...|++++|+.+++++++ ..|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667788888777765 1112 134677777888888888888888887775 23443 3467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|+.+|..+|++++|+.+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7778888888888888888777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.063 Score=41.50 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=109.5
Q ss_pred HHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 444 WSSLIVG--YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 444 ~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
...|+.+ +...|..++..++..+..... +..-|+-+|.-...+-+-+-..++++.+-+-+.+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------ 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------ 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------
Confidence 3445544 455788999999998887642 56667777776667777777778877775433322
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 522 LARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
.+|++....+.+-.++ .+...++..+......|+-++-.+++..++...|.++..+..++.+|.+.|+..+|.+++
T Consensus 73 --~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 --KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp --GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 3455555555555553 244556667778889999999999999988888889999999999999999999999999
Q ss_pred HHHHhCCCc
Q 036704 602 GSMKERGVR 610 (634)
Q Consensus 602 ~~~~~~g~~ 610 (634)
.++=++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999975
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=57.74 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CChHH
Q 036704 528 VHEAEDFINQM-AFDDD---IVVWKSLLASCKT-----HGNVDVGKRAAENILKIDPTN-SAALVLLCNIYASS-GKWEE 596 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 596 (634)
...|...+++. ...|+ ...|..++..|.. -|+.++|.+.|+++++++|.. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45554 5577777777777 489999999999999999974 88999999988884 89999
Q ss_pred HHHHHHHHHhCCCcCCCC
Q 036704 597 VARLMGSMKERGVRKVPG 614 (634)
Q Consensus 597 A~~~~~~~~~~g~~~~~~ 614 (634)
|.+.+++.++...+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877765565
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0061 Score=46.34 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-----A----FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.-...+...+.+.|+++.|...++.. . ..+...++..+..++.+.|+++.|...++++++..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445666666777777777776665 1 12346788999999999999999999999999999999888776
Q ss_pred HH
Q 036704 584 LC 585 (634)
Q Consensus 584 l~ 585 (634)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0075 Score=48.67 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG---RVHEAEDFINQM-AFD-D--DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a 563 (634)
....+.+-|.+.... + .++..+...+..++++.+ +.++++.+++.. ... | ....+-.+..+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555556555442 3 366777777777888777 566788888777 222 4 355777888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 036704 564 KRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l 584 (634)
.+.++.+++..|++..+....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999888766654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0047 Score=49.82 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=66.0
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHHH
Q 036704 528 VHEAEDFINQM--AFDDDIVVWKSLLASCKTHG---NVDVGKRAAENILKID-P-TNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 528 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
...+.+.|.+. ...++..+...+.+++.+.+ +.++++.+++.+.+.+ | ++...++.++.++.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555544 33478889999999999988 6779999999999988 7 5688899999999999999999999
Q ss_pred HHHHHhC
Q 036704 601 MGSMKER 607 (634)
Q Consensus 601 ~~~~~~~ 607 (634)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999863
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.019 Score=54.08 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHhc--cc---CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHH----hcCC-------hHHHHHHH
Q 036704 473 RPNHVTLVGVLTACS--HV---GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLA----RAGR-------VHEAEDFI 535 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~----~~g~-------~~~A~~~~ 535 (634)
+.+...|...+++.. .. .+..+|..+|+++.+. .|+. ..+..+..+|. ..+. ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 556777877776543 23 3457899999999854 6653 34443333332 1111 11222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 536 NQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 536 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+ ..+.++.++..+...+...|++++|+..+++++.++| +...|..+++++.-.|++++|.+.+++..+.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 222 2345788888888888888999999999999999997 56778899999999999999999999988754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=41.01 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 509 IPTRERRSCVVDLLARAGR---VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456666777777754444 68888888887 4444 57788888888889999999999999999988873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.094 Score=40.58 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE---AEDFINQM-AFD-D--DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 562 (634)
.....+.+-|.+.... |. ++..+--.+..++.+..+... ++.+++.+ ... | ....+-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555443 33 666666667777777776555 77777776 322 3 23456677788999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHH
Q 036704 563 GKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l 584 (634)
|.+.++.+++..|.+..+....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999988776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.025 Score=42.81 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKID-------PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+..-...++..+...|+++.|...++.+++.. +..+.++..++.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556688899999999999999999998742 345678999999999999999999999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.072 Score=57.90 Aligned_cols=130 Identities=6% Similarity=-0.058 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHH
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 493 (634)
..++..+.+.|..+.|.++.+. + ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 5556666666777776665532 1 11122344556777776664332 35566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
.|.+.|.++.. +..+...|...|+.+...++-+......+ ++....+|...|++++|++++.+.
T Consensus 699 ~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776542 33445555555655554444333311111 122333455566666666665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.70 E-value=2.8 Score=44.89 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HhhcCChHHHHHHHhcCCC-CChh-hHH---HHHHHHHhcC
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM--YVKCGSLGSARELFNFMED-PDVV-SWS---SLIVGYAQFG 455 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~ 455 (634)
..+...|+.+....++..+.+.. +..+...+..+ +.-.|+.+.+..+++.+.. .++. -|. ++.-+|+-.|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 34556777777777777766532 22333333333 3356777776666666542 2322 232 2344566778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV-HEAEDF 534 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 534 (634)
+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.. ...|.+..-..+.-+....|+. .++++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 8777777888877642 22222222333344445666666666665543 2344444444444444445543 677888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh
Q 036704 535 INQMAFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~~~~ 556 (634)
+..+...+|..+-...+.++..
T Consensus 652 L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 652 LDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHH
Confidence 8888556666655555555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=2.6 Score=43.28 Aligned_cols=261 Identities=9% Similarity=-0.025 Sum_probs=132.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHH
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGEL 359 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a 359 (634)
.-+..+.+.+++...+..+.. .+.+...-.....+....|+...|......+-..+.. ..+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~------------~p~~c 139 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS------------QPNAC 139 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC------------CCTHH
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC------------CcHHH
Confidence 345566677777766654432 1334444445556666677766565544444433311 23344
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHhhcCChHHHHHHHhcCCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVF-VMNGLMDMYVKCGSLGSARELFNFMED 438 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (634)
-.+|....+.|...+...+.. +......|+...|..+...+ +++.. ....++..+.+ ...+....... .
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~ 209 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTT-G 209 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHS-C
T ss_pred HHHHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhcc-C
Confidence 456666665553333233322 34444555666555554322 22222 22333333322 22333333322 2
Q ss_pred CChhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC
Q 036704 439 PDVVS---WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV----TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511 (634)
Q Consensus 439 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 511 (634)
++... +..-+.-+.+ .+.+.|...+....+.. ..+.. ....+.......+...++...+..... ..++
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~ 284 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQS 284 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCC
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCC
Confidence 22221 1111222333 47788888888876543 22322 233344445555534555556665443 2234
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQMAFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.....-.+....+.|+++.|...|+.++..+ .....-=+..++...|+.++|..+|+++.+
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4344444555567789999999998884432 233333445567778888888888888875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.33 Score=52.62 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 457 (634)
...++..+.+.|.++.|.++.+. .. .-.......|++++|.++.+.+. +...|..+...+.+.+++
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCH
Confidence 36677777888888888776532 11 11344567899999999988774 567899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+.|.+.|.++.+ |..+...+...|+.+...++-+..... | -++.-..+|.+.|++++|++++.+
T Consensus 698 ~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 698 KLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998753 233444444566666655554444432 2 123334455566666666666555
Q ss_pred C
Q 036704 538 M 538 (634)
Q Consensus 538 ~ 538 (634)
+
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=1.1 Score=37.00 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666665442 122333344455555544443
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA 539 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (634)
+....+ | -++.-...+.-.|+++++.+++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333322 1 13333444455666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.98 Score=35.07 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.....-+..+..+|+-++-.+++..+... -+|++...-.+..+|.+.|+..+|.+++.++-++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34455556666666666666666664332 2556666666666666666666666666666554 44
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.2 Score=39.84 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHhcccCCH------HHHHHHHHHHHHHhCCCCChh-HHHHHH------HHHHhcCChHHHHHHHHhC--C
Q 036704 475 NHVTLVGVLTACSHVGLV------EEGLQLYRIMQNEYGIIPTRE-RRSCVV------DLLARAGRVHEAEDFINQM--A 539 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~--~ 539 (634)
|..+|-..+....+.|++ ++...+|+++.. .++|+.. .+...| ..+...++.++|.++|+.+ -
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 578888888888888888 888888888886 4566431 111111 1223447888888888877 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 540 FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.+.-...|......-.+.|+.+.|.+++.+++...|.+...+...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 1112667777777777888888888888888888887666555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.28 Score=51.34 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+..-...|...|+++.|+.+.+++....|.+-.+|..|+.+|.+.|+++.|+-.+..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344445667889999999999999999999999999999999999999999999998874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.76 E-value=1.1 Score=37.13 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=87.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456778888888887665 4788888998888888999988888887752 4556666677787
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCChHHHHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-SSGKWEEVARLMGSM 604 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 604 (634)
.+.-.++-+......+ ++.....+...|+++++.+++.+.-. +. .+..++ ..|-.+.|.++.+.+
T Consensus 76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~-eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LP-LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HH-HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hH-HHHHHHHHcCcHHHHHHHHHHh
Confidence 7766655544422222 34455567788999999999876432 11 222222 357778888888765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.12 Score=39.98 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHH
Q 036704 527 RVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDV---GKRAAENILKID-P-TNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 527 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
.+..+.+.|.+. ...++..+-..+.+++.+..+... ++.+++.+.... | ......+.|+-++.+.|+|++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455555544 224788888889999988876655 999999998876 5 466678889999999999999999
Q ss_pred HHHHHHhC
Q 036704 600 LMGSMKER 607 (634)
Q Consensus 600 ~~~~~~~~ 607 (634)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999863
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.065 Score=48.37 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCC
Q 036704 492 VEEGLQLYRIMQNEYGIIPT---RERRSCVVDLLAR-----AGRVHEAEDFINQM-AFDD--DIVVWKSLLASCKT-HGN 559 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~-~g~ 559 (634)
...|...++++.+ +.|+ ...+..+...|.+ -|+.++|.+.|++. .+.| +..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444555555542 3454 3455566666666 37777777777766 4444 25555566666655 377
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 560 VDVGKRAAENILKIDPTN-SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+++.+.+++++...|.. +. ..+ ...+.-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhH
Confidence 788888888877766652 22 112 22233356666665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.43 Score=37.94 Aligned_cols=97 Identities=6% Similarity=0.167 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCH----HHHHHHHHH---hcccCCHHHHHHHHHHHHHH
Q 036704 439 PDVVSWSSLIVGYAQFGCG------EEALKLFRRMRSSGVRPNH----VTLVGVLTA---CSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~----~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~ 505 (634)
.|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|-.+--- +...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555666 5555666655553 34431 112211111 11235566666666666543
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 506 YGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.-.- ..+|......-.+.|++..|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 444444445555666666666666555
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.95 Score=35.69 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=57.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 036704 507 GIIPTRERRSCVVDLLARAGRV---HEAEDFINQM-AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 580 (634)
+-.|+..+--.+..++.+..+. .+++.+++.+ ...| ....+-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3356777766777888887754 4677777777 3334 34466677778899999999999999999999988766
Q ss_pred HHHH
Q 036704 581 LVLL 584 (634)
Q Consensus 581 ~~~l 584 (634)
...-
T Consensus 114 ~~Lk 117 (144)
T 1y8m_A 114 GALK 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.34 Score=46.90 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..++..+...|++++++..++.+...+|-+...+..++.+|.+.|+..+|++.|+++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666666666666666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.46 Score=36.90 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 509 IPTRERRSCVVDLLARAGRV---HEAEDFINQM-AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
.|+..+--.+..++.+..+. .+++.+++++ ...| ....+-.+.-++.+.|++++|.+..+.+++..|.+..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45666655666777776644 4567777766 3334 2456667777788888888888888888888888776555
Q ss_pred HH
Q 036704 583 LL 584 (634)
Q Consensus 583 ~l 584 (634)
..
T Consensus 117 Lk 118 (134)
T 3o48_A 117 LK 118 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.24 E-value=2.7 Score=33.10 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 541 DDDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|+..+--.+.+++.+..+ ..+++.+++.+....|. .....+.++-++.+.|+|++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566666666666666553 34667777777766663 444556666677777777777777777765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.61 E-value=1.7 Score=33.71 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 542 DDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 542 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
|++.+--.+.+++.+..+ ..+++.+++.+.+..|. ....+..++.++.+.|++++|.++.+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444555555555554443 23555555555555552 344455555556666666666666655554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.56 E-value=1.8 Score=35.20 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036704 470 SGVRPNH--VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-------ERRSCVVDLLARAGRVHEAEDFINQM-- 538 (634)
Q Consensus 470 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 538 (634)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455542 334444566666777777777766655433333432 23445566666777777777766664
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 539 --AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 539 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..-+ .......+. ....... -. ..+.+...-+.++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC--------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCcccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111 110100000 0000000 00 012233566779999999999999999998654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.48 E-value=17 Score=39.04 Aligned_cols=250 Identities=9% Similarity=0.007 Sum_probs=128.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHhCCCCChh-HHhHHH------hcCHhHHHHHHHHHHHCCC--C-----CCHhHHH--HH
Q 036704 318 CACTSPLSLYQGMQIHSYIIKKGFYSNVP-VCNAIL------QHQAGELFRLFSLMLASQT--K-----PDHITFN--DV 381 (634)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll------~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~--~l 381 (634)
-+....|+.+++..+++.....+...+.. -..+++ .+..+++..++.......- . +....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888877776554322111221 222222 2233467777766554321 0 1111111 22
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhH--HHHHHHHHhcCC
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVF--VMNGLMDMYVKCGSLGSARELFNFMED-PDVVSW--SSLIVGYAQFGC 456 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~l~~~~~~~~~ 456 (634)
--++...++- ++.+.+..+....-. ... .--++...+.-.|+-+-...++..+.+ .+.... -.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233334443 444555555443211 111 112233345556777766777665432 222222 333344557788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVT--LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
.+.+..+.+.+.... .|.... -..+..+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 898988888888642 222222 223455788899988888899988753 233333333344445557777777777
Q ss_pred HHhCCCCCCHHHHHHHHHH--HHhcCCH-HHHHHHHHHHHh
Q 036704 535 INQMAFDDDIVVWKSLLAS--CKTHGNV-DVGKRAAENILK 572 (634)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~--~~~~g~~-~~a~~~~~~~~~ 572 (634)
++.+....|+.+-.....+ ....|+. .+++..+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7766333344444333333 3334443 677777777754
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.07 E-value=2.8 Score=30.56 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=48.0
Q ss_pred ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 527 RVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 527 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+.-+..+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+.....+...+|..+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344455555554 678999999999999999999999999999999877666677777754
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.03 E-value=7.4 Score=35.79 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=105.4
Q ss_pred chhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHh
Q 036704 116 VLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL----YVQMLQSGLMPDQFTFGSIIRAC 191 (634)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~ 191 (634)
..|.++..-|.+++++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677778888999999998754 34456677887776665 55556778999998888888877
Q ss_pred hcCCCch-hHhHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHH
Q 036704 192 SGLCCVG-LGRQLHAHVIK----SE--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFAR 264 (634)
Q Consensus 192 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 264 (634)
......+ .-.++.+.+++ .| ..-|+..+..+...|.+.|++.+|+..|-.-...++..+..++..+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~----- 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC----- 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-----
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH-----
Confidence 6644222 23344444443 33 224678899999999999999999998863332244444444433321
Q ss_pred HHHhcCCCCChhhH----HHHHHHHHcCCChhHHHHHHHHHh
Q 036704 265 TVFNEMESPNLASW----NTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 265 ~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
..+....... .-.+--|...|+...|..+|+...
T Consensus 178 ----~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 ----QVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ----hcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1100111111 112234556788888888887654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.90 E-value=9.6 Score=36.48 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCC
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 437 (634)
.....+...|.+.|+.++...++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777777777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.21 E-value=2.1 Score=34.84 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036704 517 CVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3455555566666666665555
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.81 E-value=6.6 Score=33.12 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=28.9
Q ss_pred cCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 525 AGRVHEAEDFINQM---AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 525 ~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
.++..++.++|.-| ++.- -...|...+..+...|++++|.++|+..++.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34455666666655 2222 3556666666666667777777777766653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.44 E-value=7.3 Score=30.17 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=46.1
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+..+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-+.....+...+|..+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344444443 778999999999999999999999999999999877666777877754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.31 E-value=1.7 Score=38.55 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
..+.+.|++++|++....- +..| |...-..+++.++-.|++++|..-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456778888888776655 4444 666777777888888888888888888888888643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.11 E-value=4.4 Score=29.54 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
|.=+..+-++.+....+.|++......+++|.+.+++..|.++++-++.+- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344566777777777888999999999999999999999999998888653 333456666654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.06 E-value=33 Score=35.19 Aligned_cols=405 Identities=8% Similarity=-0.066 Sum_probs=193.3
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHc-CCCCCcchhhHHHHHHHccCCh
Q 036704 53 SLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSS-KCQPDAVLHNHILNMYGKCGSL 131 (634)
Q Consensus 53 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 131 (634)
...+.|++..+..+...+... .+.|-. .|..+...+. ....++...+++ +. +.+.....-..-+..+.+.+++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~-pL~~yl-~y~~l~~~l~-~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDY-PLYPYL-EYRQITDDLM-NQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTS-TTHHHH-HHHHHHHTGG-GCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhhcCC-CcHHHH-HHHHHHhCcc-cCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCH
Confidence 355667777776666555322 121111 3333332221 112333333332 22 2222223334556667778888
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 132 EDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 132 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
......+.. ...+...--....+....|+..+|....+.+=..|- .....+..++..+...|.+...
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~----------- 155 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPL----------- 155 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHH-----------
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHH-----------
Confidence 888887776 323333333455667777887777777776655542 3334455555555444433221
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChh---hHHHHHHHHHcC
Q 036704 212 HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLA---SWNTIIAGVASC 288 (634)
Q Consensus 212 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~ 288 (634)
.. -.-+......|+...|..+...+..........++....+............ ++.. .+..-+.-+.+
T Consensus 156 -----~~-~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 156 -----AY-LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTG-ATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp -----HH-HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-
T ss_pred -----HH-HHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccC-CChhhHHHHHHHHHHHHh-
Confidence 11 2223445566777777777766632221222334433344444444443322 2222 12222333333
Q ss_pred CChhHHHHHHHHHhhCC-CCCCHh--HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCCh---hHHhHHHhcCHhHHHHH
Q 036704 289 SNANEAMSLFSEMGDRE-LIPDGL--TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNV---PVCNAILQHQAGELFRL 362 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~a~~~ 362 (634)
.+.+.|..++......+ ..+... ....+.......+...++...+..........+. ....++..+++..|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 37789999998876433 222221 2233344455555344555555554333221111 12223334588888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV 442 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 442 (634)
|..|..... ....-.-=+.+++...|+.++|..+|..+... . ..|..+. ..+.|..-.. .. .........
T Consensus 308 ~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-~~-~~~~~~~~~ 377 (618)
T 1qsa_A 308 LARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-KI-DKAPQNVDS 377 (618)
T ss_dssp HHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-CC-CCCCSCCCC
T ss_pred HHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-CC-CCCChhHHh
Confidence 888755321 12222233445667788888898888888642 1 2233322 1222211000 00 000000000
Q ss_pred -----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 036704 443 -----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 443 -----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.-..-+..+...|....|...|..+.+. . +......+.......|.++.++.
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 1112244566778888888777777654 1 22223333333444555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.64 E-value=11 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=28.4
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA 539 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (634)
|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455666666665555531 22235556666666666666666666666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.45 E-value=27 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=25.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 437 (634)
++..+...+..+.+.++... .+.++...-.+..++...|++++|...|.+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444444554444443322 12233333344556666777777777776553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.26 E-value=6.4 Score=28.52 Aligned_cols=87 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778888877776653 33333344556788999999999999999999998887754 47788888888887887
Q ss_pred HCCCCCChhhHH
Q 036704 174 QSGLMPDQFTFG 185 (634)
Q Consensus 174 ~~g~~p~~~~~~ 185 (634)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 35554453
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.22 E-value=7.8 Score=43.58 Aligned_cols=120 Identities=12% Similarity=-0.035 Sum_probs=66.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccC----CCCC----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEM----PQRN----VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIR 189 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 189 (634)
|..++..+.+.+.++.+.++-... .+.+ ...|..+...+...|++++|...+-.+..... -...+..++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 556666676777666665544322 1111 12467777777778888888777777765433 2344555555
Q ss_pred HhhcCCCch------------hHhHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChhHHHHHH
Q 036704 190 ACSGLCCVG------------LGRQLHAHVIKSE--HGSHLISQNALIAMYTKFDRILDAWNVF 239 (634)
Q Consensus 190 ~~~~~~~~~------------~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 239 (634)
.++..+..+ ++.+++..-.+.. +...+..|..|=.-+...|++.+|-.++
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 555444333 3344443322221 2222344566666666777777766554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.69 E-value=10 Score=33.66 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..+.|+.+++++....-++.. +-|...-..++..+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555655555555542 2234444445555555666666655555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.53 E-value=32 Score=33.69 Aligned_cols=185 Identities=10% Similarity=0.053 Sum_probs=102.2
Q ss_pred hcCHhHHHHHHHHHHHC-----CCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH----Hhhc
Q 036704 353 QHQAGELFRLFSLMLAS-----QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM----YVKC 423 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 423 (634)
+++++.|++.+..+.+. ...........++..|...++++...+.+..+.+..... ......++.. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 45677777776665542 234455667778888888888888877776665433222 2222233322 2222
Q ss_pred CC--hHHHHHHHhcCCC---CC--h-----hhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHh
Q 036704 424 GS--LGSARELFNFMED---PD--V-----VSWSSLIVGYAQFGCGEEALKLFRRMRSS--GVRPN---HVTLVGVLTAC 486 (634)
Q Consensus 424 g~--~~~A~~~~~~~~~---~~--~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 486 (634)
.. .+.-..+.+.+.. .- . .....|...|...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 2223334443331 11 1 12345667777788888888888776532 21111 23455566777
Q ss_pred cccCCHHHHHHHHHHHHHHh-CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 487 SHVGLVEEGLQLYRIMQNEY-GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
...+++.+|..++.++.... ...++ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77778888877777764321 12222 233455566666677777776655444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=7.1 Score=37.56 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCCChhHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIPTRERR 515 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 515 (634)
...++..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666777788888888777777653 33667788888888888888888888776543 34777776654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.75 E-value=6.9 Score=28.41 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=60.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356777777777776653 333333445567789999999999999888998888877543 6677777777777777
Q ss_pred HCCCCCChhhHH
Q 036704 174 QSGLMPDQFTFG 185 (634)
Q Consensus 174 ~~g~~p~~~~~~ 185 (634)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 35444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.37 E-value=12 Score=27.15 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 390 SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46667666666665553 22222222456778899999999999998999998887754 367878888888878887
Q ss_pred CCCCCCHHHHHH
Q 036704 470 SGVRPNHVTLVG 481 (634)
Q Consensus 470 ~~~~p~~~~~~~ 481 (634)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555443
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=82.13 E-value=12 Score=29.88 Aligned_cols=49 Identities=8% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 036704 563 GKRAAENILK--IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRK 611 (634)
Q Consensus 563 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 611 (634)
+..+|+.+.. +.-..+..|...+..+...|++++|.++++.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666554 444556666666666777777777777776666555433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.11 E-value=36 Score=32.51 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=97.4
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHhhcCC-hHHHHHHHhcCCC---CChhhH--
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKT-GLAL---DVFVMNGLMDMYVKCGS-LGSARELFNFMED---PDVVSW-- 444 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~-- 444 (634)
......+...|.+.|+.++..+++...... +.-+ .......+++.+....+ .+.-.++.....+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999998888876521 1111 23455667777765432 3333333333321 222233
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCCChhH
Q 036704 445 ----SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-GIIPTRER 514 (634)
Q Consensus 445 ----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 514 (634)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2467778888888888888888766422222 2335555667778888888888887776442 22244333
Q ss_pred HHH----HHHHHH-hcCChHHHHHHHHhC
Q 036704 515 RSC----VVDLLA-RAGRVHEAEDFINQM 538 (634)
Q Consensus 515 ~~~----l~~~~~-~~g~~~~A~~~~~~~ 538 (634)
... -...+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 221 123334 677888887776554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.67 E-value=13 Score=27.04 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 346667666666665553 222222224567788999999999999999999988877543 6677788888887887
Q ss_pred hCCCCCCHHHHH
Q 036704 469 SSGVRPNHVTLV 480 (634)
Q Consensus 469 ~~~~~p~~~~~~ 480 (634)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.66 E-value=35 Score=31.35 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=73.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMA-----SLEMGTQLHCYIMKTGL--ALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
-+++...+.+++++......++..+.... +..-..+....-.+.|- .-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 34445555666777766666666654422 12222333333334432 247788899999999999999999977
Q ss_pred hcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 434 NFMEDPDVVSWSSLIVGYAQF---GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 434 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
-.....+...+..++.-.... |...++ +...-..++. |...|+...|..+++...+.
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 643322444444444333332 322221 1122222333 44568899999988877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 634 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 47/295 (15%), Positives = 89/295 (30%), Gaps = 8/295 (2%)
Query: 307 IPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLM 366
+ + + + L H+ +K F A L + + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 367 LASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSL 426
A Q PD +G + + L ++ G +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 427 GSARELFNFM--EDPDVV-SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL 483
A F DP+ + ++ +L + + A+ + R S + V +
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244
Query: 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ--MAFD 541
GL++ + YR P + + + L G V EAED N
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 542 DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596
+L + GN++ R L++ P +AA L ++ GK +E
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 9e-04
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 10/186 (5%)
Query: 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFR 465
+ L ++ + A + V +L Y + G + A+ +R
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 466 RMRSSGVRPNHVTLVGVL-TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524
R ++P+ L A G V E Y + ++
Sbjct: 262 RAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN--NLANIKRE 317
Query: 525 AGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582
G + EA + F + +L + + G + + ++I PT + A
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 583 LLCNIY 588
+ N
Sbjct: 378 NMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.24 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.82 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.2 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.44 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.44 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.37 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.52 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.94 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 89.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.9e-21 Score=187.90 Aligned_cols=377 Identities=11% Similarity=0.030 Sum_probs=268.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
..+.+.|++++|.+.++++.+.. +-+...+..+...+...|++++|...++.+.+..+ .+..++..+..+|...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccc
Confidence 44556677777777777776542 22345556666666667777777777776666532 23456666677777777777
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHH
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTV 313 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 313 (634)
+|...+....+.++ .+...+..........+....+.............. ....
T Consensus 85 ~A~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 138 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP-------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-YCVR 138 (388)
T ss_dssp HHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-THHH
T ss_pred cccccccccccccc-------------------------cccccccccccccccccccccccccccccccccccc-cccc
Confidence 77777665544332 223333333333344444444444444333322111 1222
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHH
Q 036704 314 RSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEM 393 (634)
Q Consensus 314 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 393 (634)
..........+....+ ...+....... +-+...+..+...+...|+++.
T Consensus 139 ~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 187 (388)
T d1w3ba_ 139 SDLGNLLKALGRLEEA------------------------------KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHHHHTTSCHHHH------------------------------HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred ccccccccccchhhhh------------------------------HHHHHHhhccC-cchhHHHHhhcccccccCcHHH
Confidence 2222222333333333 33333333221 3345677778888889999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
|...+.+..+..+. +...+..+...+...|++++|...++... ..+...+..+...+.+.|++++|...|++..+.
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 188 AIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999887654 67788889999999999999999998765 355667888899999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 036704 471 GVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWK 548 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 548 (634)
. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|++.+++. ...| +..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T d1w3ba_ 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 235788889999999999999999999998863 4557778889999999999999999999987 5566 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
.++.+|...|++++|+..++++++++|+++.++..++.+|.+.||
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.4e-20 Score=179.16 Aligned_cols=357 Identities=13% Similarity=0.018 Sum_probs=268.6
Q ss_pred HHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHh
Q 036704 189 RACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFN 268 (634)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 268 (634)
..+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|...|+++.+.++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------- 64 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--------------------- 64 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 34456788888888888877654 23456677777778888888888888777655443
Q ss_pred cCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHH
Q 036704 269 EMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVC 348 (634)
Q Consensus 269 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 348 (634)
.+..+|..+...|.+.|++++|+..+......... +..............+.
T Consensus 65 ----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------- 116 (388)
T d1w3ba_ 65 ----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGD----------------------- 116 (388)
T ss_dssp ----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSC-----------------------
T ss_pred ----CCHHHHHHHHHHhhhhccccccccccccccccccc-ccccccccccccccccc-----------------------
Confidence 35567777777888888888888888777654322 11222222111111121
Q ss_pred hHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHH
Q 036704 349 NAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 349 ~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (634)
...+........... .................+....+...+......... +...+..+...+...|++++
T Consensus 117 -------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 187 (388)
T d1w3ba_ 117 -------MEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp -------SSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHH
T ss_pred -------ccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHH
Confidence 122222222222221 333444455556667777888888888887776644 66778888899999999999
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 429 ARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 429 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
|...++...+ .+...|..+...+...|++++|...+++....+ ..+...+..+...+.+.|++++|...|+++.+.
T Consensus 188 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999987653 445678889999999999999999999998875 446778888899999999999999999998853
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 506 YGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.+.+...+..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..
T Consensus 267 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp --CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2335678889999999999999999999988 444578899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++.+|.+.|++++|.+.++++.+.
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.9e-14 Score=134.65 Aligned_cols=223 Identities=12% Similarity=0.019 Sum_probs=175.8
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCh
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 457 (634)
....+.+.|++++|...|+++++..+. +...|..+..++...|++++|...|++..+ .+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 445567888888888888888877654 677788888888888888888888887652 3456777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPNHV----------------TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
++|.+.+++..... |+.. .....+..+...+...+|...+.++.......++..++..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 88888888877652 2211 11111223334566788888888887653444567778888999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
+...|++++|+..+++. ...| +...|..++..|...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 3344 678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 036704 600 LMGSMKE 606 (634)
Q Consensus 600 ~~~~~~~ 606 (634)
.|++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.4e-13 Score=128.05 Aligned_cols=225 Identities=10% Similarity=-0.036 Sum_probs=175.7
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh--------
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDV-------- 441 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------- 441 (634)
+-+..++..+..++...|+++.|...+.++.+..+. +...+..+...|...|++++|.+.++.... |+.
T Consensus 50 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 128 (323)
T d1fcha_ 50 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128 (323)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccccccccchhhHHHhccchHHHHHhhh
Confidence 345678888999999999999999999999987755 678888899999999999999999987642 111
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 442 --------VSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 442 --------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
......+..+...+...++...+++..+... .++...+..+...+...|++++|...+++.... .+-+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 206 (323)
T d1fcha_ 129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDY 206 (323)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccc
Confidence 0111123334455677888999888876532 235677888888999999999999999999864 23357
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-----------
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA----------- 579 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----------- 579 (634)
..+..+..+|.+.|++++|.+.+++. ...| +..++..++.+|...|++++|++.|++++++.|++..
T Consensus 207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 286 (323)
T d1fcha_ 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHH
Confidence 78889999999999999999999988 4445 6778999999999999999999999999998887654
Q ss_pred hHHHHHHHHHhcCChHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~ 599 (634)
.|..+..++...|+.+.+..
T Consensus 287 ~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 287 IWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 44566777777777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=4.8e-09 Score=100.18 Aligned_cols=229 Identities=11% Similarity=0.022 Sum_probs=144.6
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCC----C-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-------CC----h
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLA----L-DVFVMNGLMDMYVKCGSLGSARELFNFMED-------PD----V 441 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~ 441 (634)
+..+..++...|++++|...+.+..+.... + ....+..+...+...|++..+...+..... +. .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 444555666667777777776666532111 0 123344555666777777777766665421 11 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-----h
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR----PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-----R 512 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~ 512 (634)
..+..+...+...|+++.+...++........ ....++......+...++...+...+...........+ .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 23455666777888888888888777654221 12344555566667778888888777766544222221 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCchh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILK------IDPTNSAA 580 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~ 580 (634)
..+..+...+...|++++|...+++. ...| ....+..+..++...|++++|...+++++. ..|....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 23445566777888888888888876 2211 244566677788888888888888888764 33445667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+..++.+|.+.|++++|.+.+++..+
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888888888888888888887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.6e-09 Score=96.96 Aligned_cols=221 Identities=9% Similarity=-0.037 Sum_probs=139.1
Q ss_pred HhHHHHHHHHHHHCCCCC---CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 356 AGELFRLFSLMLASQTKP---DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
.+.++.-+.+........ ...++..+..++.+.|++++|...|++.++..+. ++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhh
Confidence 344444555554432111 1235666778888899999999999999887755 778888888999999999999999
Q ss_pred HhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 433 FNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 433 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
|+++.+ | +..++..+..+|...|++++|...+++..+.. +.+......+...+.+.+..+.+..+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 988763 3 45578888888888999999999999888764 22344433444444555555555555444442 22
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHH-hC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFIN-QM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
++...++ ++..+.............. .. ...| ...++..++..|...|++++|+..|++++..+|++...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 2222222222222111111 11 1122 2346667788888889999999999998888887765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.5e-09 Score=99.74 Aligned_cols=225 Identities=10% Similarity=0.076 Sum_probs=161.3
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLIVGY 451 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 451 (634)
..++.+...+.+.+.+++|...++++++..+. +...|+....++...| ++++|+..++...+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 45666666777888889999999998888755 6677777777777766 47888888887652 4566788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCC---
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGR--- 527 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--- 527 (634)
.+.|++++|+..++++.+.. +-+...|..+...+...|++++|.+.++++.+. .| +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence 88888888888888888764 235778888888888888888888888888853 34 45566666666655554
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhc--CChHHHH
Q 036704 528 ---VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASS--GKWEEVA 598 (634)
Q Consensus 528 ---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~ 598 (634)
+++|++.+.+. ...| +...|..+...+.. ...+++...++.+.+..|.. +..+..++.+|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 56777777766 4444 56677777666544 34577778888887777653 44555666666543 5666777
Q ss_pred HHHHHHHh
Q 036704 599 RLMGSMKE 606 (634)
Q Consensus 599 ~~~~~~~~ 606 (634)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.8e-09 Score=102.09 Aligned_cols=280 Identities=9% Similarity=-0.045 Sum_probs=188.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhH-HH---HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLT-VR---SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
+..++......+..++|++++....+. .|+..+ |+ .++......+......
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~----------------------- 86 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESA----------------------- 86 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHH-----------------------
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHH-----------------------
Confidence 333444444444568999999988764 566543 22 2233333333222111
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc--ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAM--ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (634)
+..++|+..++...+.. +-+...+..+..++... +++++|...+..+.+...+.....+......+...+..+.|+.
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence 14556666666666543 33455566665555544 4689999999999988665333334455677888899999999
Q ss_pred HHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 432 LFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 432 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.++.+.+ .+...|+.+..++...|++++|...++...+. .|+. ..+...+...+..+++...+..... .-
T Consensus 166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~ 238 (334)
T d1dcea1 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GR 238 (334)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hC
Confidence 9998875 34567888888999999988776655443332 1211 1223334455666677777777764 33
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+++...+..++..+...|+.++|.+.+.+. ...| +..++..++.++...|++++|++.++++++++|.+...|..+..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 444555666777888889999999999887 5555 56688889999999999999999999999999999999998887
Q ss_pred HHHh
Q 036704 587 IYAS 590 (634)
Q Consensus 587 ~~~~ 590 (634)
.+.-
T Consensus 319 ~~~~ 322 (334)
T d1dcea1 319 KFLL 322 (334)
T ss_dssp HHHH
T ss_pred HHhH
Confidence 7664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.3e-08 Score=93.00 Aligned_cols=162 Identities=5% Similarity=-0.039 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL- 521 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 521 (634)
.|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.+.|.++|+++.+. .+.+...+...+..
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e 178 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 344444455555555555555555554322212234455555555555555555555555432 11122222222222
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhcCChH
Q 036704 522 LARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS----AALVLLCNIYASSGKWE 595 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~ 595 (634)
+...|+.+.|..+|+.+ ..+.+...|...+..+...|+++.|..+|++++...|.++ ..|...+..-...|+.+
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~ 258 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 12234555555555554 2222344555555555555555555555555555444322 24444444444455555
Q ss_pred HHHHHHHHHHh
Q 036704 596 EVARLMGSMKE 606 (634)
Q Consensus 596 ~A~~~~~~~~~ 606 (634)
.+.++.+++.+
T Consensus 259 ~~~~~~~r~~~ 269 (308)
T d2onda1 259 SILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.8e-09 Score=98.04 Aligned_cols=216 Identities=12% Similarity=-0.003 Sum_probs=150.2
Q ss_pred ccHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLAL---DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 462 (634)
.+.+.+...+++........ ...++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|...|++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 44556666666766443221 234666778899999999999999998763 556789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFD 541 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 541 (634)
.|+++.+.. +-+..++..+..++...|++++|...++...+. . +.+......+...+.+.+..+.+..+.... ...
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999999874 224678888899999999999999999999864 2 224444444445555556555555544444 112
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 542 DDIVVWKSLLASCK----THGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 542 ~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++...+. ++..+. ..+..+.+...+.......|....++..++.+|...|++++|.+.+++..+.+
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2211121 222221 22234444444445555667777789999999999999999999999998754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1e-08 Score=95.41 Aligned_cols=114 Identities=8% Similarity=0.025 Sum_probs=52.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA-SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
..++|+..+++..+.. +-+...|+....++...| ++++|...++.+.+..+. +..+|..+...+.+.|++++|+..+
T Consensus 58 ~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~ 135 (315)
T d2h6fa1 58 RSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFI 135 (315)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred chHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHH
Confidence 4445555555544431 222233444444444433 245555555555444433 4444444444455555555555555
Q ss_pred hcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 434 NFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 434 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
+.+.+ .+...|..+...+...|++++|+..++++.+.
T Consensus 136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54432 23334444445555555555555555555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=3.6e-08 Score=91.58 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=151.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-C-hhhHHHHHHHHHhcCChHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-D-VVSWSSLIVGYAQFGCGEEALKLF 464 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~ 464 (634)
+..+.|..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+....+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678899999998765555777888889999999999999999998753 3 2 346888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 036704 465 RRMRSSGVRPNHVTLVGVLTA-CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM----A 539 (634)
Q Consensus 465 ~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 539 (634)
+++.+.+. .+...|...+.. +...|+.+.|..+|+.+... .+.+...+...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99998753 244444444432 34468999999999999975 3446788999999999999999999999997 3
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 540 FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 540 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..| ....|...+..-...|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 344 2457888888888999999999999999998887644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.3e-08 Score=95.27 Aligned_cols=302 Identities=9% Similarity=-0.023 Sum_probs=159.7
Q ss_pred HHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 036704 221 ALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSE 300 (634)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 300 (634)
....++...|++++|..++++..+..+..... .....+..+...+...|++++|...|.+
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFY--------------------SRIVATSVLGEVLHCKGELTRSLALMQQ 76 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH--------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH--------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566778999999999988754432210000 0134577788899999999999999998
Q ss_pred HhhC----CCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCC--C
Q 036704 301 MGDR----ELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTK--P 373 (634)
Q Consensus 301 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~--~ 373 (634)
..+. +..+. ...+..+...+...|++..+...+...... .. ..+.. +
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----------------------~~---~~~~~~~~ 130 (366)
T d1hz4a_ 77 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL-----------------------IN---EQHLEQLP 130 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------HH---HTTCTTST
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hH---hcccchhh
Confidence 7542 11111 233445555666777777777766554431 11 11111 1
Q ss_pred -CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHH
Q 036704 374 -DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL----DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLI 448 (634)
Q Consensus 374 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 448 (634)
....+..+...+...|+++.+...+.......... ....+......+...++...
T Consensus 131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 190 (366)
T d1hz4a_ 131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN-------------------- 190 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH--------------------
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHH--------------------
Confidence 11234445556667777777777776666443221 12222333333444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC--ChhHHHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSS----GVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP--TRERRSCVVD 520 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 520 (634)
+...+.+.... +..+. ...+......+...|+++.|...++.........+ ....+..+..
T Consensus 191 -----------a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 191 -----------ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp -----------HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 44433332211 10000 12233334444555555555555554432100000 1122334555
Q ss_pred HHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CchhHHH
Q 036704 521 LLARAGRVHEAEDFINQM-------AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---------NSAALVL 583 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~ 583 (634)
++...|++++|.+.+++. +..|+ ...+..+...|...|++++|.+.+++++++.+. ....+..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 566666666666666554 22232 346667777788888888888888887764332 1223344
Q ss_pred HHHHHHhcCChHHHHH
Q 036704 584 LCNIYASSGKWEEVAR 599 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~ 599 (634)
+...+.+.++.+++..
T Consensus 340 ~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCCChHHHH
Confidence 5555666677666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=8.2e-09 Score=97.49 Aligned_cols=215 Identities=7% Similarity=-0.043 Sum_probs=162.4
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--ChHHHHHHHhcCCC---CChhhHHH-HHHHHHhcCChH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG--SLGSARELFNFMED---PDVVSWSS-LIVGYAQFGCGE 458 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-l~~~~~~~~~~~ 458 (634)
+...|.+++|..+++.+.+..++ +...+..+..++...+ ++++|...++.+.+ ++...+.. ....+...+.++
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence 34456688999999999988765 6666776666666555 58899999998753 34555543 446677789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.|+..++++.+.. +-+...|..+...+...|++++|...+...... .|+ ...+...+...+..+++...+...
T Consensus 162 ~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 162 EELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHH
Confidence 9999999998875 236788888888999999888776655544432 111 112334455567777788777766
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 539 --AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 539 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..+++...+..++..+...|+.++|...+.+..+.+|.+..++..++.+|.+.|++++|.+.++++.+.
T Consensus 235 l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 235 LLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333445566677778888899999999999999999999999999999999999999999999999774
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=3.7e-08 Score=85.11 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
|+...+......|.+.|++++|+..|++. ...| ++..|..++.+|.+.|++++|+..++++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33344444445555555555555555544 2222 444555555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHHHHH
Q 036704 588 YASSGKWEEVARLMGSMK 605 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~ 605 (634)
|.+.|++++|+..++++.
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=6.5e-08 Score=74.69 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=66.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
-...+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..++++++.+|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 345666777777777777776 3333 56677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhC
Q 036704 596 EVARLMGSMKER 607 (634)
Q Consensus 596 ~A~~~~~~~~~~ 607 (634)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 777777777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=2.8e-07 Score=84.56 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=107.0
Q ss_pred HHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHHHHHHHH
Q 036704 418 DMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV---RP--NHVTLVGVL 483 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~ 483 (634)
..|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+... .+ ...++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 345555555555555554431 11 13566666677777777777777766543210 11 133445555
Q ss_pred HHhc-ccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC----C-HHHHHH
Q 036704 484 TACS-HVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-A---FDD----D-IVVWKS 549 (634)
Q Consensus 484 ~~~~-~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~----~-~~~~~~ 549 (634)
..|. ..|++++|.+.+++.........+ ..++..+...+...|++++|.+.++++ . ..+ . ...+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 5553 358888888888776542111111 334666778888888888888888876 1 111 1 123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHh--cCChHHHHHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSA-----ALVLLCNIYAS--SGKWEEVARLMGSMK 605 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 605 (634)
.+..+...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..|+++.
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555667788888888888888887775322 34455555554 245777777775443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.66 E-value=4.8e-08 Score=74.70 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
.+...+.+.|++++|+..+++. ...| ++..|..++.++.+.|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788899999999999998 4445 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 036704 595 EEVARLMGSMK 605 (634)
Q Consensus 595 ~~A~~~~~~~~ 605 (634)
++|.+.+++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.2e-07 Score=71.60 Aligned_cols=105 Identities=19% Similarity=0.049 Sum_probs=89.1
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~ 560 (634)
...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|++.+++. ... .++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45677889999999999998864 3446778888999999999999999999988 333 4788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
++|+..++++++.+|+++.++..+..+-.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999888876543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=8.1e-07 Score=81.34 Aligned_cols=195 Identities=9% Similarity=-0.070 Sum_probs=133.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSS 446 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 446 (634)
....|...+++++|...|.++.+. +-++ ...+|..+..+|.+.|++++|...++...+ .+ ...+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677888888888888888743 1111 235678888889999999999888886642 12 234566
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-----hHH
Q 036704 447 LIVGYAQ-FGCGEEALKLFRRMRSS----GVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-----ERR 515 (634)
Q Consensus 447 l~~~~~~-~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~ 515 (634)
+...|.. .|++++|++.+++..+. +-.+. ..++..+...+...|++++|...|+++.......+.. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 69999999999887542 21111 4557888899999999999999999988642222211 223
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDDD------IVVWKSLLASCKT--HGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p 575 (634)
...+..+...|+++.|...+++. ...|. ......++.++.. .+.+++|+..|+.+.+++|
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 44556777889999999999998 44332 2345666666654 3457888888877666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.6e-06 Score=73.46 Aligned_cols=141 Identities=10% Similarity=-0.027 Sum_probs=103.1
Q ss_pred HHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 417 MDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
...+...|+++.|++.|+.+.+++...|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778899999999998888888888888899999999999999999988864 234778888888888999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+.|++.... .+.+... .+...| +..+.+ ..++..+..++...|++++|.+.++++++..|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887642 2222110 000000 011111 34566778888899999999999999998888
Q ss_pred CC
Q 036704 576 TN 577 (634)
Q Consensus 576 ~~ 577 (634)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.6e-07 Score=75.03 Aligned_cols=122 Identities=13% Similarity=0.006 Sum_probs=100.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCK 555 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 555 (634)
.+..-...|.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|++.|++. ...| +..+|..++.++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3455566788999999999999999864 2346778889999999999999999999988 4445 6789999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCChHHHHHHH
Q 036704 556 THGNVDVGKRAAENILKIDPTNSAALVLLCNIY--ASSGKWEEVARLM 601 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~ 601 (634)
..|++++|+..++++++..|.++.++..+..+. ...+.+++|....
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999888876664 3445677776553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.4e-07 Score=77.01 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=81.2
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
...+...|++++|++.|+++. +|++.+|..++.+|...|++++|++.|+++++.+|+++.+|..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 445678999999999999874 5688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 036704 599 RLMGSMKER 607 (634)
Q Consensus 599 ~~~~~~~~~ 607 (634)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=8.3e-07 Score=72.81 Aligned_cols=89 Identities=10% Similarity=-0.117 Sum_probs=47.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
..+.|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|+++.+. .+.+...+..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcC
Confidence 3444555555555555555555543 223455555555555555555555555555532 1223345555555555555
Q ss_pred ChHHHHHHHHhC
Q 036704 527 RVHEAEDFINQM 538 (634)
Q Consensus 527 ~~~~A~~~~~~~ 538 (634)
++++|.+.+++.
T Consensus 93 ~~~eA~~~~~~a 104 (159)
T d1a17a_ 93 KFRAALRDYETV 104 (159)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555555
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=2.2e-07 Score=80.07 Aligned_cols=101 Identities=8% Similarity=-0.120 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036704 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLL 551 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 551 (634)
|+...+......+.+.|++++|+..|+++... .+.+...|..+..+|.+.|++++|+..|++. ...| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 33444444444455555555555555554432 1223444555555555555555555555554 3334 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.+|...|++++|+..+++++++.|+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5555555555555555555554444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.1e-06 Score=67.78 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 036704 480 VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR---VHEAEDFINQM-AFDDDI---VVWKSLLA 552 (634)
Q Consensus 480 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~---~~~~~l~~ 552 (634)
..++..+...+++++|.+.|++.... -+.+..++..+..++.+.++ +++|+++++++ ...|++ .++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677777888888999988888863 23466777778888876554 45688888887 444433 36778899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+|.+.|++++|++.|+++++++|++..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999988777665443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.3e-06 Score=69.78 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+++.+..+|.+.|++++|+..+++. ...| ++..+..++.+|...|++++|+..|+++++++|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4667888899999999999999988 4455 7889999999999999999999999999999999999999998887766
Q ss_pred CChHHH
Q 036704 592 GKWEEV 597 (634)
Q Consensus 592 g~~~~A 597 (634)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.32 E-value=9.2e-05 Score=66.14 Aligned_cols=226 Identities=8% Similarity=-0.041 Sum_probs=159.5
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHHH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLIV 449 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~ 449 (634)
+..+..|...+...+++++|.+.|++..+.| +...+..|...|.. ..+...|...+....+ .+......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 3455566667778899999999999998877 55566666666665 5678888888887664 34445555555
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 450 GYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA--CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 450 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
.+.. ..+.+.|...++...+.|.. ........... .........+...+..... ..+...+..|...|.
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhc
Confidence 5443 46778899999998887632 22111111211 2234567777777776654 245566666777776
Q ss_pred h----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----c
Q 036704 524 R----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS----S 591 (634)
Q Consensus 524 ~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 591 (634)
. ..+...+..+++......+......+...|.. ..++++|+..|+++.+.. ++.++..|+.+|.+ .
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSS
T ss_pred cCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCc
Confidence 5 45677888888877445577788888877765 568999999999998875 57788999999886 3
Q ss_pred CChHHHHHHHHHHHhCCCc
Q 036704 592 GKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~g~~ 610 (634)
.+.++|.+.|++..+.|..
T Consensus 232 ~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHCcCH
Confidence 4899999999999888754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3e-06 Score=70.07 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.++..+..+|.+.|++++|+..++++++.+|.++.++..++.+|...|++++|...|+++.+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3677788899999999999999999999999999999999999999999999999999998753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=5e-07 Score=69.70 Aligned_cols=92 Identities=10% Similarity=0.023 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTN--SAALVLLCNIY 588 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 588 (634)
..+++.+...+++++|++.|++. ... .++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 434 47889999999997644 5568999999999988765 44889999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036704 589 ASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~ 607 (634)
.+.|++++|++.++++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.24 E-value=1.7e-05 Score=65.20 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
++..+..+|.+.|++++|+..+++. .. +.+...+..++.++...|++++|+..|+++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999988 33 347889999999999999999999999999999999999999888887666
Q ss_pred CChHH-HHHHHHHHH
Q 036704 592 GKWEE-VARLMGSMK 605 (634)
Q Consensus 592 g~~~~-A~~~~~~~~ 605 (634)
+...+ ..+.+.+|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 65543 445555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.3e-06 Score=65.97 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA-------ALVLLC 585 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 585 (634)
+..+...+.+.|++++|++.|++. ...| +...+..+..+|...|++++|+..++++++.+|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888999999999999887 3344 6888999999999999999999999999998887765 455566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036704 586 NIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677888899999999988765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=9.7e-06 Score=65.52 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++..++.+|.+.|++++|++.++++++.+|.+..+|..++.++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666666666666666666666666666666666553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=6.6e-06 Score=67.99 Aligned_cols=85 Identities=9% Similarity=-0.029 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+..++.+.|++++|+..++++ ...| ++..|..++.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445666778888889999999888887 5555 67788888888888999999999999999999988888888777665
Q ss_pred hcCChHH
Q 036704 590 SSGKWEE 596 (634)
Q Consensus 590 ~~g~~~~ 596 (634)
+.....+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=1.4e-05 Score=64.48 Aligned_cols=126 Identities=9% Similarity=-0.062 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.+......+.+.|++.+|+..|++....- |.. ..............+ ...++..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~~--------~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKNI--------EISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhhH--------HHHHHhhHHHHH
Confidence 34455667778888888888888777531 110 000000000000111 124667788999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.+.|++++|++.+++. ...| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999997 4455 78899999999999999999999999999999999998888766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=7.2e-06 Score=67.73 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
....+..+..++.+.|++++|+..+.++++++|.++.+|..++.+|.+.|++++|++.|+++.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34577888899999999999999999999999999999999999999999999999999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=3.1e-05 Score=63.63 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.++..+..+|.+.|++++|+..++++++.+|.+..++..++.+|...|++++|...++++.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566788889999999999999999999999999999999999999999999999999998743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=2.3e-05 Score=64.83 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=83.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV-HEAEDFINQMAFDDDIVVWKSLLASCKTHGNVD 561 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 561 (634)
.......|++++|.+.|.....- .+....- .+ ..+.+ .....-++. .....+..++..+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 34566778888888888888743 2221100 00 00111 111111111 12346778899999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcCCC
Q 036704 562 VGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE-----RGVRKVP 613 (634)
Q Consensus 562 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~ 613 (634)
+|+..++++++.+|.+..+|..++.+|.+.|++++|++.|+++.+ .|+.|.|
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999998853 5776554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=7.8e-07 Score=88.21 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
+..+...+.+.|+.++|...++.. ...| ..++..++..+...|++++|+..|+++++..|++..+|+.++.++...|+
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~ 201 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201 (497)
T ss_dssp --------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence 333444444444444444433332 1001 12344444444455555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHh
Q 036704 594 WEEVARLMGSMKE 606 (634)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (634)
..+|...|.+...
T Consensus 202 ~~~A~~~y~ral~ 214 (497)
T d1ya0a1 202 HLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 5555555444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=1.8e-05 Score=63.10 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=51.8
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG-----------NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
+++|++.|++. .+.| +..+|..++.+|...| ++++|.+.|+++++.+|++...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34555555555 3333 4556666666655443 46889999999999999998888777654
Q ss_pred HHHHHHHHHHHhCCC
Q 036704 595 EEVARLMGSMKERGV 609 (634)
Q Consensus 595 ~~A~~~~~~~~~~g~ 609 (634)
.+|.+++.++.++|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 467777777777775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=4.1e-05 Score=55.64 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM----A----FDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.-.+...+.+.|++++|+..|++. + ..++ ..++..+..++.+.|++++|+..++++++.+|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335667777888888888877765 1 1122 568889999999999999999999999999999999998885
Q ss_pred H
Q 036704 586 N 586 (634)
Q Consensus 586 ~ 586 (634)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.83 E-value=4.3e-05 Score=61.87 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=62.7
Q ss_pred HHHHhcCChHHHHHHHHhC----CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 036704 520 DLLARAGRVHEAEDFINQM----AFDD----------DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT--------- 576 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~----~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--------- 576 (634)
..+.+.|++++|++.|++. +..| ....|+.+..+|...|++++|...++++++..|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666666554 1112 1356778888899999999999999988875432
Q ss_pred --CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 577 --NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 577 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
...++..++.+|...|++++|.+.|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123678899999999999999999998775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.82 E-value=2.8e-05 Score=58.73 Aligned_cols=89 Identities=15% Similarity=0.018 Sum_probs=67.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC 128 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (634)
.....+.+.|++++|+..|+++.+. .|-++..|..+..++.+.|+++.|...+++.++.. |.+..++..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 3455577788888888888888765 34456677778888888888888888888887775 55677777788888888
Q ss_pred CChHHHHHHhcc
Q 036704 129 GSLEDARMVFDE 140 (634)
Q Consensus 129 g~~~~A~~~~~~ 140 (634)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888877765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.012 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
+..+.+++...|...+|++.-.+
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHH
Confidence 34455666666666666544333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.013 Score=52.89 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=49.6
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 457 (634)
....+..+.+..+++...++.....+.. +...+.++......-+..+..+ .+.+.++.
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~------------------~~~k~~~l 264 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVN------------------YFSKVKQL 264 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHH------------------HHHHTTCT
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC----HHHHHHHHHHhccCCCHHHHHH------------------HHHhcCCc
Confidence 3344445555555555555544444431 2233444444444444444433 34445556
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.....+++.....| +....+++...|...++++.-.+
T Consensus 265 ~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 265 PLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp TTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 66666666655544 34667777777887777655333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00021 Score=55.19 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...++++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34455555666666666666655543 2235555555556666666666666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=2.3e-05 Score=62.47 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=63.1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT----------HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
.+.+.+++|++.|+.. ...| ++.++..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666666 3333 45566666666543 3456899999999999999999999999999987
Q ss_pred cCC-----------hHHHHHHHHHHHhC
Q 036704 591 SGK-----------WEEVARLMGSMKER 607 (634)
Q Consensus 591 ~g~-----------~~~A~~~~~~~~~~ 607 (634)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 68899999888763
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.65 E-value=0.0032 Score=55.58 Aligned_cols=219 Identities=11% Similarity=-0.048 Sum_probs=118.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC----CCChHHHHHHHHHHHHhCCCCChhHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS----PLSLYQGMQIHSYIIKKGFYSNVPVCN 349 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 349 (634)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~------- 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS------- 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-------
Confidence 45567778888889999999999999998876 23333333333332 34555555555555444321
Q ss_pred HHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHH----HHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh----
Q 036704 350 AILQHQAGELFRLFSLMLASQTKPDHITFNDVM----GACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYV---- 421 (634)
Q Consensus 350 ~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 421 (634)
.....+. .......+.+.|...++...+.|.... ...+...+.
T Consensus 71 --------------------------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 71 --------------------------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKV 121 (265)
T ss_dssp --------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSS
T ss_pred --------------------------chhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCc
Confidence 1111111 112224455666666666665553211 111211222
Q ss_pred hcCChHHHHHHHhcCC-CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCH
Q 036704 422 KCGSLGSARELFNFME-DPDVVSWSSLIVGYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLV 492 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 492 (634)
.......+...+.... ..+...+..|...|.. ..+...+..+++...+.| +......+...+.. ..++
T Consensus 122 ~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 2334455555555433 3455566666666654 345566667777666654 44444444333332 4567
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036704 493 EEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVHEAEDFINQM 538 (634)
Q Consensus 493 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 538 (634)
++|...|++..+. | ++..+..|..+|.+ ..+.++|.++|++.
T Consensus 199 ~~A~~~~~~aa~~-g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 199 KEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 244 (265)
T ss_dssp HHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred hhhhhhHhhhhcc-c---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 7777777777654 3 34444456666654 33677777777766
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=2.9e-05 Score=76.57 Aligned_cols=108 Identities=8% Similarity=-0.061 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCK 555 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 555 (634)
.+..+...+.+.|+.+.|...++..... .| ..++..+.+.+...|++++|...|++. ...| +...|+.++..+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3334444444445555544444433321 01 123344455555555555555555554 2233 3345555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 556 THGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
..|+..+|+..|.+++...|+.+.++.+|..++.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=9.7e-05 Score=65.23 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=72.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 530 (634)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45677777777777777763 225677777777777777777777777777643 443 3333334444443333333
Q ss_pred HHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 531 AEDFINQM--AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 531 A~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+..-.... ...| +...+...+..+...|+.++|.+.++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 33222221 1122 222333344556667777777777777777777665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00064 Score=54.58 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=61.4
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC---
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIPT----------RERRSCVVDLLARAGRVHEAEDFINQM--------AFDDD--- 543 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~--- 543 (634)
.+...|++++|++.|++......-.|+ ...|+.+..+|...|++++|.+.+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666666543222222 245666777777777777777776664 12222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 544 --IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 544 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...+..+..+|...|++++|+..|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 235677889999999999999999999987554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00022 Score=51.59 Aligned_cols=65 Identities=14% Similarity=-0.030 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-------SAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
....-.++..+.+.|++++|+..++++++..|.+ ..++..++.++.+.|++++|...++++++..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445578889999999999999999999865543 4578999999999999999999999998754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=0.00012 Score=64.57 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=87.6
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 563 (634)
..+.|++++|+..+++..+ .-+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999986 34457889999999999999999999999998 55564 45555555555544444443
Q ss_pred HHHHHHHHh-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 564 KRAAENILK-IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 564 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
......... ..|++...+...+.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 332222111 234445556666778889999999999999988743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0024 Score=52.23 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=81.6
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 461 (634)
.......|++++|.+.|......-..+ . +......+.+...-..+.......+..+...+...|++++|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~--~--------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGP--V--------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSS--T--------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccc--c--------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 346677888888888888887532110 0 000000011111111111122346777888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCCChhHH
Q 036704 462 KLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIPTRERR 515 (634)
Q Consensus 462 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 515 (634)
..++++.+.. +-+...|..++.++...|+..+|.+.|+++.+ ..|+.|+..+-
T Consensus 88 ~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 88 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999998874 33688899999999999999999999988743 35888887653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.31 E-value=0.11 Score=37.67 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=103.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
+...|..++..+++.+.... .+..-|+-++.-....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 55678899999999888764 2566677777777777788888888888765444433 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 531 AEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 531 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
....+-.++ .+...++..+......|+-+.-.++++.+.+....+|.....++.+|-+.|...+|-+++.++=+.|+.
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 233455666777888899999999999988877778889999999999999999999999999888874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.033 Score=42.56 Aligned_cols=82 Identities=4% Similarity=-0.052 Sum_probs=51.9
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHH
Q 036704 526 GRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS----SGKWEEV 597 (634)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 597 (634)
.+.++|.+++++.....++.....+...|.. ..|.++|.+.|+++.+.. ++.+...|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4455555555555223344444455555443 346778888888877653 45667777777776 3578888
Q ss_pred HHHHHHHHhCCC
Q 036704 598 ARLMGSMKERGV 609 (634)
Q Consensus 598 ~~~~~~~~~~g~ 609 (634)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888888877775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.028 Score=41.49 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=49.9
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 510 PTRERRSCVVDLLARAG---RVHEAEDFINQM-AFDD-D-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
++..+--....++.+.. +.++++.++++. ...| + ...+-.+..+|.+.|++++|.+.++++++.+|.+..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 44555555666666554 456777777776 3233 3 3466677777888888888888888888888887766544
Q ss_pred H
Q 036704 584 L 584 (634)
Q Consensus 584 l 584 (634)
.
T Consensus 113 ~ 113 (124)
T d2pqrb1 113 K 113 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=1.1 Score=42.11 Aligned_cols=355 Identities=7% Similarity=-0.054 Sum_probs=179.4
Q ss_pred HHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchh
Q 036704 120 HILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGL 199 (634)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 199 (634)
.-+..+.+.+++......+...+ .+...-.....+....|+.+.|...+..+-..|. .....+..+..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~---------- 144 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFS---------- 144 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHH----------
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHH----------
Confidence 33556667778777776664322 2333333456667778888888877776655442 11122222332
Q ss_pred HhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHH
Q 036704 200 GRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWN 279 (634)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (634)
.+.+.| ..+...+-.-+......|+...|..+...+...........+................+ ++.....
T Consensus 145 ------~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~-~~~~~~~ 216 (450)
T d1qsaa1 145 ------VWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTG-ATDFTRQ 216 (450)
T ss_dssp ------HHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSC-CCHHHHH
T ss_pred ------HHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCC-CChhhhH
Confidence 223222 22333333445556667888888888777655443334444444433333333333322 2222222
Q ss_pred HHHHHHHc--CCChhHHHHHHHHHhhCC-CCCCHhH-HH-HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc
Q 036704 280 TIIAGVAS--CSNANEAMSLFSEMGDRE-LIPDGLT-VR-SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH 354 (634)
Q Consensus 280 ~li~~~~~--~g~~~~A~~~~~~m~~~g-~~p~~~~-~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (634)
.+..++.+ ..+.+.|..++....... ..++... .. .+.......+..+.+......
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~------------------- 277 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD------------------- 277 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHh-------------------
Confidence 23333222 245666777776654432 2111111 11 111222233333444333333
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
.... ..+.....-.+......+++..+...+..+.... .......--+..++...|+.+.|...|.
T Consensus 278 -----------~~~~--~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 278 -----------AIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp -----------HHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hccc--ccchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 2222 2233333334444556677777777776653221 1123334455677788888888888888
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCH----HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 435 FMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR--PNH----VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 435 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.+.... +|..++.+-.-...+.- ....+. +.. ..-..-+..+...|....|...+..+.. ..
T Consensus 344 ~~a~~~--~fYG~LAa~~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~--~~ 411 (450)
T d1qsaa1 344 QLMQQR--GFYPMVAAQRIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK--SK 411 (450)
T ss_dssp HHHTSC--SHHHHHHHHHTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHhcCC--ChHHHHHHHHcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh--CC
Confidence 776532 34433332221111100 000000 010 0111234556688999999999888864 32
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQMAFD 541 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (634)
+......+.....+.|.++.|+....+.+..
T Consensus 412 --~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 412 --SKTEQAQLARYAFNNQWWDLSVQATIAGKLW 442 (450)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred --CHHHHHHHHHHHHHCCChhHHHHHHHHHHcc
Confidence 4555667788888999999999888877543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.089 Score=38.70 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 542 DDIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTNS-AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 542 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+--..++++.+.. +.++|+.+++++.+.+|.+. ..++.|+.+|.+.|++++|.+.++++++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 55666667777776554 45688889998888888664 57788888899999999999999888763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=1.2 Score=41.79 Aligned_cols=261 Identities=10% Similarity=-0.000 Sum_probs=129.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHH
Q 036704 281 IIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELF 360 (634)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~ 360 (634)
.+..+.+.++++..+..+. ..+++...-.....+....|+...|......+-..|.. ..+..-
T Consensus 78 ~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~------------~p~~c~ 140 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS------------QPNACD 140 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC------------CCTHHH
T ss_pred HHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CchHHH
Confidence 3556677777766554331 12334444445666667778777777666555443321 223334
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHhhcCChHHHHHHHhcCCCC
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD-VFVMNGLMDMYVKCGSLGSARELFNFMEDP 439 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 439 (634)
.++..+...| .++...+-.-+......|+...|..+...+ +++ .......+..... ...+........ .
T Consensus 141 ~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~ 210 (450)
T d1qsaa1 141 KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTTG-A 210 (450)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-C
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhC---hHhHHHHHhcCC-C
Confidence 4555555544 334444444444555556666666554322 112 2223333333322 222222222221 2
Q ss_pred ChhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 440 DVVSWSSLIVGYAQ--FGCGEEALKLFRRMRSSGVRPNHVT----LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 440 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
+......+..++.+ ..+.+.+..++......... +..- -..+.......+..+.+...+...... ..+..
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 286 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS 286 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchH
Confidence 22222233333222 24667777777776554311 2111 122223334455666666666655432 23444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQMAFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
...-.+....+.+++..+...+..+...| ...-.-=++.++...|+.+.|...|..+..
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 44444555556677777777777774333 233333455667777777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.23 E-value=0.19 Score=37.96 Aligned_cols=112 Identities=7% Similarity=-0.033 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVHE 530 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 530 (634)
.|+++|+++|++..+.| .| .....+. .....+.++|.+.+++..+. | ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g-~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN-EM--FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTT-CT--THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCC-Ch--hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 36788999999988877 22 2222332 34556888999999888754 4 34444555565554 457899
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 036704 531 AEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 531 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 575 (634)
|.++|++.....++.....|...|.. ..|.++|.+.++++.+...
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999988434566677777777765 4588999999999877553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.52 E-value=0.55 Score=34.02 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.+..-+..+..+|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++-+++.++-++ |+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 44555666677777777777777766543 666777777777777777777777777766654 44
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.94 E-value=2 Score=29.38 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=45.9
Q ss_pred ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 527 RVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 527 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
+.-+..+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+....-.+...|..+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334455555554 67799999999999999999999999999999876654566676664
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.82 E-value=2.5 Score=31.78 Aligned_cols=142 Identities=12% Similarity=-0.019 Sum_probs=98.4
Q ss_pred hcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHH
Q 036704 24 LCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVH 103 (634)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (634)
..++.+-|.++..+.-=|..+......+..+..+|++.+|..+--...+ |+--++.|.+.+-.+-...|...-.+.+|
T Consensus 11 ~l~n~~la~~lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~--giLRt~~Ti~rFk~~~~~pGq~spLL~YF 88 (157)
T d1bpoa1 11 VLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYF 88 (157)
T ss_dssp TTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc--ccccCHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 3577888888887776666665444678889999999999999877765 45556667776666666778888899999
Q ss_pred HHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 104 DHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
..+.+.| ..+..--..+++.....|+.+-..+++.+-+ -+++-=+.-+++..+..-|+.+|.+.
T Consensus 89 ~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e~K----L~~SEeLGDlv~~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 89 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDK----LECSEELGDLVKSVDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC----SCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHcCC----ccCcHHHHHHHHHcCHHHHHHHHHHc
Confidence 9999988 5565555567777778888888777776533 12222222233444556666666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.12 E-value=1.2 Score=30.39 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHH
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNM 124 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (634)
+.-++.+-++.+... ..-|++....+.+++|.+.+++..|.++++-.+.+. .++...|..+++-
T Consensus 21 D~we~rrgmN~l~~~-DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 344555666666665 678899999999999999999999999998877653 4456677766653
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