Citrus Sinensis ID: 036742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLPRNISTSLSTSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHcccccEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHcEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEEccccccccccccccEcccccccccccEHHHHHHHHcccccccHHHccccccccccccccccccccHHHHHcccccccccccHHHccccccHHHHcccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccEEEEccccccccHHHHHHHHHHHHcccccccccccEEEEEccHHHHcHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHccEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccEcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHEEcc
Coil and Loop (DISEMBL)
messsrysrastlhshssapmkqnksgyepsdtetdwqespwhdhnaknggdladdsnlprnistslstsSVRHAlkidkddrfgsppkfssparrrqssklsekpnynrramtapklrpvlrdkeqennhaivgqkeritsasslprnpirrQREVvskfeaptigeLNEMVASAkmfqgpitttnaalrfestdsigdiffsrdgfaknggvqadvhprpvifpqrnssshhesrsnsglgidqtpqrpslpippitpanlvvsrqssngkfssegsktsyasvksstsstkfannrrktgqadawfscmkkgscrksksspekrafdetSFIQKAVVIEKlrpfwadkhqpsslngfiCHRHEAQLLKELvvdgncphilikgqsgsGKRALAMALLHEIYgdacwnekwptqvlvpvassahhVELNVNLQANAKYALMGLVKEIRdnlaitpevsNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCkvikvdppvTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKalnypfaddqpiplgWEEVLIELAAEiladpspkrLVMVRGKIQKLLAEFVHPKLILLVMHYI
Flexible Loop (DISEMBL)
messsrysrastlhshssapmkqnksGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLPRNIstslstssvrhalkidkddrfgsppkfssparrrqssklsekpnynrramtapklrpvlrdkeqennhaivgqkeritsasslprnpirrqrevvskfeaptiGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSsngkfssegsktsyasvksstsstkfannrrktgqadawfscmkkgscrksksspekrafdetsFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHckvikvdppvtHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEiladpspkRLVMVRGKIQKLlaefvhpklILLVMHYI
Low Complexity Region (SEG)
MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLPRNISTSLSTSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQrnssshhesrsnsGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGsktsyasvksstsstkFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWeevlielaaeilaDPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************IGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADV*****************************************************************************************WF**********************TSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI********IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY*
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************************MVAS**************LRFESTDSIGDIFFSRDGFA***********************************************************************************************************************************IEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV**********PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Disordered Region (DISEMBL)
***************************************SPWHDHNAKNGGDLADDSNLPRNISTSLSTSSVRHALKIDKDDRFGSP*******************NYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQ***************GIDQTPQRPSLPIPPITPANLVVSR************************************QADAWFSCM*****************DETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Disordered Region (DISPRO)
*******************************************************************************************************************************************************************PTIGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAK*************************************PQR****IPPITPANLVVS*************************STKFANNRRKTGQADAWFSCMKKG***************************KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLPRNISTSLSTSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
Q8R323	356	Replication factor C subu	yes	no	0.435	0.769	0.317	2e-41
P40938	356	Replication factor C subu	no	no	0.440	0.778	0.310	1e-39
Q2TBV1	356	Replication factor C subu	yes	no	0.435	0.769	0.307	1e-39
Q54BN3	347	Probable replication fact	yes	no	0.440	0.798	0.327	2e-38
Q8X082	352	Replication factor C subu	N/A	no	0.437	0.781	0.284	1e-28
O94697	358	Replication factor C subu	yes	no	0.438	0.770	0.254	2e-21
P38251	354	Replication factor C subu	yes	no	0.432	0.768	0.264	6e-18
Q0W037	322	Replication factor C smal	yes	no	0.324	0.633	0.260	1e-15
A3MS28	326	Replication factor C smal	yes	no	0.322	0.622	0.269	3e-15
Q5UZE5	325	Replication factor C smal	yes	no	0.314	0.609	0.259	7e-15

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 162/293 (55%), Gaps = 19/293 (6%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W DK++PSSL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
                +   Q +         +   +S +H+E+N +   N+   +   ++E+   +A + 
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119

Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
           ++  +      ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
             ++V  P   +I  VL  + RKE   L  T A ++A K+ +NLRKA++  EAC+   YP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
           F +DQ IP   WE  L E A  I++  +P+RL+ VRG++ +LL   + P++I+
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.
Mus musculus (taxid: 10090)

>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
                +   Q +         +   +S +H+E+N +   N+ +  +  ++K +     L 
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
              +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
           +V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  EAC+   YPF  
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242

Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
           DQ IP   WE  L E A  I++  +P+RL+ VRG++ +LL   + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Homo sapiens (taxid: 9606)

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 160/293 (54%), Gaps = 19/293 (6%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
                +   Q +         +   +S +H+E+N +   N+   +   ++E+   +A + 
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119

Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
           ++  +      ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
             ++V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  EAC+   YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
           F  DQ IP   WE  L E A  I++  +P+RL+ VRG++ +LL   + P++I+
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Bos taurus (taxid: 9913)

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 13/290 (4%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W DK++P+SL+    H   +  LK ++  G+ PH+L+ G SG+GK+   +A+L EIYG 
Sbjct: 2   LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61

Query: 407 ACWNEKW-------PT---QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAI 455
                K        PT    + +   SS +H+E+N     +  +  +  ++KEI  +  I
Sbjct: 62  NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121

Query: 456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
                 A  ++++ EVDK ++  Q+ ++  M+ Y   C+LILCC+    +I+ +K+ C  
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181

Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
           I+V  P   EI +VL ++A  E FDL    A  +A ++  NLR A+M LE+ KA  YPF 
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241

Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             +   L WE  + ++  +   + SP RL +VRGK+ +LL   + P+LI 
Sbjct: 242 STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIF 291

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B14D6.460 PE=3 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 147/288 (51%), Gaps = 13/288 (4%)

Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
            DKH+P SL+    H   ++ L+ L   G+ PH+L+ G SG+GK+   +A L E+YG   
Sbjct: 5   VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64

Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLAIT 456
              K   +V            + +S +H+E+  +   N  +  +  L+KE+     + ++
Sbjct: 65  EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLS 124

Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
            +    ++VI E D      Q  ++  M+ Y+ + +LIL      +II  +++ C +++V
Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRV 184

Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
             P   EI +VL   A+KE + +      +IA ++ +NLR+A++  EA  A N    D  
Sbjct: 185 AAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDST 244

Query: 577 PI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
           PI P  WE ++ ++A EI+ + +P R++ VR K+  LL   +   +IL
Sbjct: 245 PIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIIL 292

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc5 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 19/295 (6%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W D+++P +L     H+  ++ L  L      PH+L+ G SG+GK+   +A+L E+YG 
Sbjct: 2   LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61

Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMG-LVKEIRDNLAIT 456
                K   +           + + SS HH+E+  +   N    +M  L+K++  +  + 
Sbjct: 62  GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121

Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
            +      ++VI   D+     Q  ++  M+ Y+++ +LIL       IIE +++   ++
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181

Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL---NYP 571
           +V  P   EI+ V+ +I   +  +   +    IA    +NLRKAI+ LE   A    N  
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241

Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             D     P+P  W+  + ++   +L + SP R++ VR  +  LL+  + P  IL
Sbjct: 242 LIDTGAQLPLP-DWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTIL 295

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
            W DK++P SLN    +      LK L     + PH+L+ G +G+GK+   MALL  I+G
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
              +  K   +  V          V SS +H+E+   ++  N +  +  L+KE+      
Sbjct: 63  PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122

Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
                +D LA   +     ++I E +   +  Q  ++  M+ Y+ + +LI+ C+    II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178

Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
             +K+ C +I+   P   EI  +L  +   E   L +     +IA  +  NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238

Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
           +  ALN   A     P+    W  V+ +L  +I+ + S   L+  R  +  LLA  +   
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297

Query: 621 LIL 623
           +IL
Sbjct: 298 IIL 300

Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 19/223 (8%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W +K++P  L   I H+   + L   V  GN PH+L  G  G GK A A+AL  E+YG 
Sbjct: 6   IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64

Query: 407 ACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
               E W +  +   AS    ++ +  N++  A+ A +G             E    +I 
Sbjct: 65  ----ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLG-------------EAKFKIIF 107

Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
           + E D      Q  ++  M+ Y  +C+ I+ C     IIE +++ C V +  P    +I 
Sbjct: 108 LDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDIT 167

Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
             + +IA+ E   +       +   A+ ++R+AI AL++   +
Sbjct: 168 TGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI 210

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Uncultured methanogenic archaeon RC-I (taxid: 351160)

>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
           FW +K++P S    +        L+E V  GN PH+L  G  G+GK  +A+ L  E+YG+
Sbjct: 5   FWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64

Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
             W E              + +ELN + +       +G+++E     A T  V  A   +
Sbjct: 65  -YWRE--------------NTLELNASDERG-----IGVIRERVKEFARTAPVGKAPFKL 104

Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
           +++ E D      Q  ++ IM+ Y  + + IL       II+ + + C V +  P   H 
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164

Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
           + E L +IAR E  +L       I   ++ ++RKAI  L+   A++
Sbjct: 165 MAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVS 210

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Pyrobaculum calidifontis (strain JCM 11548 / VA1) (taxid: 410359)

>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rfcS PE=3 SV=2

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+  + H +    LK  V   +  H+L  G +G+GK   A A+  E+YGD 
Sbjct: 16  WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
            W E              H +ELN + +       + +V++   N A T    V   +I 
Sbjct: 76  -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115

Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
           + E D      Q  ++  M+ ++++ + IL C     II+ +++ C V +  P     + 
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175

Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
           E +  IA +ED +L+      +   A  ++RKAI  L+A 
Sbjct: 176 EEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (taxid: 272569)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
297735132	708	unnamed protein product [Vitis vinifera]	0.966	0.858	0.525	1e-176
255561098	779	replication factor C / DNA polymerase II	0.799	0.645	0.597	1e-167
359476885	766	PREDICTED: uncharacterized protein LOC10	0.818	0.672	0.563	1e-163
449451671	713	PREDICTED: uncharacterized protein LOC10	0.945	0.834	0.478	1e-160
449528029	723	PREDICTED: uncharacterized LOC101218071	0.944	0.821	0.477	1e-159
356540777	731	PREDICTED: uncharacterized protein LOC10	0.933	0.803	0.475	1e-153
356495392	718	PREDICTED: uncharacterized protein LOC10	0.937	0.821	0.473	1e-150
224094813	924	predicted protein [Populus trichocarpa]	0.831	0.566	0.541	1e-149
357483535	733	Replication factor C subunit [Medicago t	0.941	0.807	0.452	1e-145
413923603	740	hypothetical protein ZEAMMB73_411986 [Ze	0.910	0.774	0.400	1e-107

>gi|297735132|emb|CBI17494.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 355/676 (52%), Positives = 449/676 (66%), Gaps = 68/676 (10%)

Query: 1   MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLP 60
           ME+S+RY R S  H     P K  +SGYEPSDTETDWQ+SPW D N  NG      S LP
Sbjct: 1   MENSTRYGRTSLPHF---PPSKSRRSGYEPSDTETDWQDSPWRDRNETNG---PLRSELP 54

Query: 61  RNISTSLS-----TSSVRHALKIDKDDRFGSPPKFSSPARRRQS------------SKLS 103
           R     L        S RH+ KI+ D    +    +SP RRR S            S+ S
Sbjct: 55  RTPFDPLPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHSKSPYKPHKGEAVSRTS 114

Query: 104 EKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEA 163
           E+PN + R+ +AP+ +    +K+++ N+  + Q+   T  S L ++  R+Q E   K + 
Sbjct: 115 ERPNSSHRSASAPRTKAA--EKDRQINYGRLEQRSERT-PSPLAKSTARKQIESSPK-KG 170

Query: 164 PTIGELNEMVASAKMFQGPITTTNAALRFESTDS--IGDIFFSRDGFA---------KNG 212
           P++ E+N MVA+ ++ +G +   +   +F+STDS   GDIFFS D  A         KN 
Sbjct: 171 PSVSEINVMVATERLARGGVRDFS---KFDSTDSNLPGDIFFSHDYTALALQKNVLQKNN 227

Query: 213 GVQADV--HPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSS 270
             ++    +P P    +RN +++  SR N     +      S  +    P++  VSR+SS
Sbjct: 228 VFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSS-AVSRESS 286

Query: 271 NGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFD 330
            G+ S+E SK S AS     S  KF  NRRK+  +DAWF+CM+KG C K++ SPEKR  D
Sbjct: 287 -GRVSTESSKMSDAS----GSLKKFTANRRKS-HSDAWFACMRKGPC-KTRKSPEKRDVD 339

Query: 331 ETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGS 390
           ETSFIQKA+V+E LR FWADKH+P+SLNGF  H+ EAQLLK+LV    CPH+L KG SGS
Sbjct: 340 ETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGS 399

Query: 391 GKRALAMALLHEIYGDACWN-----------EKWPTQVLVPVASSAHHVELNVNLQANAK 439
           GK+AL MALL EIYGDA WN           EK P QV+VP+ SSAHHVELNVNL+  A+
Sbjct: 400 GKKALTMALLREIYGDASWNISHELRSFHVQEKRPMQVVVPLTSSAHHVELNVNLEPYAR 459

Query: 440 YALMGLVKEIRDNLAITPEVSN----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL 495
           +ALM +VK+IR N  ITPE  +    +++V+YEVDKAAE+IQYLIKWIMD YTD+C+LI+
Sbjct: 460 HALMAIVKQIRSNCEITPEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIM 519

Query: 496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555
           CCEDDVD++ESVK  CKVIK++ PVTHEIMEVLIQIARKEDFDL M+FAAKIATK+KQ+L
Sbjct: 520 CCEDDVDVLESVKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDL 579

Query: 556 RKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
           RKAIMALEACKA NYPF DDQPIPLGWEEVL+ELAAE+L DPSP RL  +RGKIQKLL +
Sbjct: 580 RKAIMALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVD 639

Query: 616 FVHPKLIL--LVMHYI 629
           FVHPKLIL  LV  ++
Sbjct: 640 FVHPKLILQKLVEQFL 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561098|ref|XP_002521561.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223539239|gb|EEF40832.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 318/532 (59%), Positives = 378/532 (71%), Gaps = 29/532 (5%)

Query: 114 TAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKF-EAPTIGELNEM 172
           TAP++R   R KEQENN     QKE   + SS  R    +QRE  S     PT+GE+NEM
Sbjct: 197 TAPRMRG--RVKEQENNLGPGEQKEE-RAPSSFLRTTTSKQRERESSHPRTPTVGEINEM 253

Query: 173 VASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGFA---------KNGGVQADVHPR 221
           VA+ KM + P+     A  FEST+SI  GDIFFSRD  A         KNG  + +  PR
Sbjct: 254 VANIKMSRSPMLN---APNFESTESISPGDIFFSRDHTALTIQKKNLPKNGNDKTNPIPR 310

Query: 222 PVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKT 281
           P  F Q +S+ H  S +N+    +    R  +     T      +    +GKFSSE SK 
Sbjct: 311 PTRFTQMDSAGHQVSTNNNN--TENKSSRTLMSSGSRTTTITSSALSGHSGKFSSESSKI 368

Query: 282 SYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVI 341
           S  S  +S SS +F  NR+K+ QAD WFSCM++G CR ++ SPEK   DE SFI+KA V+
Sbjct: 369 SDTSKTTSVSSKRFTENRKKS-QADGWFSCMRRGPCR-TRKSPEKHHLDEVSFIEKAFVV 426

Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
           E LR FWADKHQPSSL+GFICH+ EAQLLK+LV   N PHIL+KG SGSGKR+LAMALL 
Sbjct: 427 ESLRQFWADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLC 486

Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
           EI+G AC NE+   QV VP+ASSAHH+ELNVNL+ NAK+ALM LV+EI +N A+ PEVSN
Sbjct: 487 EIFGGACRNEERAMQVAVPIASSAHHLELNVNLEPNAKHALMSLVREISNNYALAPEVSN 546

Query: 462 A-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
           A       ++V+Y+VDKAAE IQ+LIKWIMD YTD+CKLILCCEDD DI+E V   C+VI
Sbjct: 547 ATFKPDYKVLVLYQVDKAAEDIQHLIKWIMDCYTDACKLILCCEDDADILEPVTNRCRVI 606

Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
           KVD PVTHEIMEVLIQIARKE+F+L M FAA+IA K+KQ+LRKAIM LEACK  NYPFAD
Sbjct: 607 KVDSPVTHEIMEVLIQIARKEEFELPMNFAARIAAKSKQHLRKAIMTLEACKEHNYPFAD 666

Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
           DQPIP  WEEVLIELAAEIL+DPSPKRL MVRGK QKLL +FVHPKLILL +
Sbjct: 667 DQPIPSSWEEVLIELAAEILSDPSPKRLFMVRGKFQKLLLDFVHPKLILLKL 718

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476885|ref|XP_003631905.1| PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 311/552 (56%), Positives = 395/552 (71%), Gaps = 37/552 (6%)

Query: 100 SKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVS 159
           S+ SE+PN + R+ +AP+ +    +K+++ N+  + Q+   T  S L ++  R+Q E   
Sbjct: 177 SRTSERPNSSHRSASAPRTKAA--EKDRQINYGRLEQRSERT-PSPLAKSTARKQIESSP 233

Query: 160 KFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDS--IGDIFFSRDGFA-------- 209
           K + P++ E+N MVA+ ++ +G +   +   +F+STDS   GDIFFS D  A        
Sbjct: 234 K-KGPSVSEINVMVATERLARGGVRDFS---KFDSTDSNLPGDIFFSHDYTALALQKNVL 289

Query: 210 -KNGGVQADV--HPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVS 266
            KN   ++    +P P    +RN +++  SR N     +      S  +    P++  VS
Sbjct: 290 QKNNVFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSS-AVS 348

Query: 267 RQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEK 326
           R+SS G+ S+E SK S AS     S  KF  NRRK+  +DAWF+CM+KG C K++ SPEK
Sbjct: 349 RESS-GRVSTESSKMSDAS----GSLKKFTANRRKS-HSDAWFACMRKGPC-KTRKSPEK 401

Query: 327 RAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKG 386
           R  DETSFIQKA+V+E LR FWADKH+P+SLNGF  H+ EAQLLK+LV    CPH+L KG
Sbjct: 402 RDVDETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKG 461

Query: 387 QSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV 446
            SGSGK+AL MALL EIYGDA WNEK P QV+VP+ SSAHHVELNVNL+  A++ALM +V
Sbjct: 462 PSGSGKKALTMALLREIYGDASWNEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIV 521

Query: 447 KEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499
           K+IR N  ITPEVSN        ++V+YEVDKAAE+IQYLIKWIMD YTD+C+LI+CCED
Sbjct: 522 KQIRSNCEITPEVSNVDFKADYKVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCED 581

Query: 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
           DVD++ESVK  CKVIK++ PVTHEIMEVLIQIARKEDFDL M+FAAKIATK+KQ+LRKAI
Sbjct: 582 DVDVLESVKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAI 641

Query: 560 MALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHP 619
           MALEACKA NYPF DDQPIPLGWEEVL+ELAAE+L DPSP RL  +RGKIQKLL +FVHP
Sbjct: 642 MALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHP 701

Query: 620 KLIL--LVMHYI 629
           KLIL  LV  ++
Sbjct: 702 KLILQKLVEQFL 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451671|ref|XP_004143585.1| PREDICTED: uncharacterized protein LOC101218071 [Cucumis sativus]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 323/675 (47%), Positives = 437/675 (64%), Gaps = 80/675 (11%)

Query: 21  MKQNKSGYEPSDTETDWQESPWHDHNAK----NGGDLADDSNLPRNISTS-------LST 69
           MKQ K GYEPSDTET+WQESPW+D   K    +  +   DS +P+  S +       L  
Sbjct: 8   MKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVPKKFSMAANVSPPGLRR 67

Query: 70  SSVRHALKIDKDD-------------------RFGSPPKFS------SPARRRQ------ 98
           +  +   +  KDD                   R  SP K S      S  R R+      
Sbjct: 68  NGGKTPRRPAKDDSVLVMLQRNISPLSRAERRRHESPFKASGEEIGSSSMRSRKEEKFTY 127

Query: 99  ---SSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQR 155
              S+K S+KP+Y+RR++TAP+LR  ++D+     + +  ++ER  +A +L  + I +Q 
Sbjct: 128 SHGSNKTSQKPSYSRRSVTAPRLR--MKDEHMIAANDLSQRRER--AAPTLKVSSILQQP 183

Query: 156 EVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGF----- 208
           + VS  ++P+IGE+NE++A  ++ +G +   +  +  EST SI  GDIFFSRDG      
Sbjct: 184 KEVSHAKSPSIGEMNELIADGRINRG-LALNDPVV--ESTGSISPGDIFFSRDGLPVGMN 240

Query: 209 ----AKNGGVQADVHPRPVIFPQRNSSSHHESRSNS-GLGIDQTPQRPSLPIPPITPANL 263
               AK    +  + P+P    ++N  ++++   N+ G G+  T       +   T ++ 
Sbjct: 241 NNVTAKRNAFKNYISPKPTFVTKKNDDTYNQVEVNANGRGVSST----GGGLSTTTNSSA 296

Query: 264 VVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSS 323
            VSR++S+ + S E SK S  S ++S S+ +F  NRRK  + D WFSCM+ G+CR +KS 
Sbjct: 297 AVSRENSS-RISLENSKISDVSGRTSESTRRFIANRRKK-KNDIWFSCMRNGTCRTTKS- 353

Query: 324 PEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHIL 383
           PEKR FDE ++I+KA V+E L+PFWAD+H+P SLNGF  H+HEAQLLK+LV   + PHIL
Sbjct: 354 PEKRPFDEATYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHIL 413

Query: 384 IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443
            KG  GSGKR L MALL EIYGD+CWNE+  TQV VP+ SSAHHVELN++ ++NAKYAL+
Sbjct: 414 FKGPRGSGKRVLMMALLREIYGDSCWNERKLTQVFVPLTSSAHHVELNLSSESNAKYALL 473

Query: 444 GLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC 496
           GL KEI    +I  E  N        ++V+ +VDKA E IQ+L++WIMDGY D+CK++LC
Sbjct: 474 GLAKEIGSEYSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLC 533

Query: 497 CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556
           CEDD  I+ESV + CKVIK++PPVTHEIM+VLI+IA KE+FDL M FA+KIATKAKQNLR
Sbjct: 534 CEDDSGILESVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLR 593

Query: 557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
           KAIMALEACKA NYPF+DDQPIP+GWE+ L+ELA+ IL DPS  RL  V+ KIQKLL + 
Sbjct: 594 KAIMALEACKAHNYPFSDDQPIPIGWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDS 653

Query: 617 VHPKLIL--LVMHYI 629
           VHPKLIL  LV  ++
Sbjct: 654 VHPKLILQKLVEQFL 668

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528029|ref|XP_004171009.1| PREDICTED: uncharacterized LOC101218071 [Cucumis sativus]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 322/674 (47%), Positives = 436/674 (64%), Gaps = 80/674 (11%)

Query: 22  KQNKSGYEPSDTETDWQESPWHDHNAK----NGGDLADDSNLPRNISTS-------LSTS 70
           KQ K GYEPSDTET+WQESPW+D   K    +  +   DS +P+  S +       L  +
Sbjct: 9   KQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVPKKFSMAANVSPPGLRRN 68

Query: 71  SVRHALKIDKDD-------------------RFGSPPKFS------SPARRRQ------- 98
             +   +  KDD                   R  SP K S      S  R R+       
Sbjct: 69  GGKTPRRPAKDDSVLVMLQRNISPLSRAERRRHESPFKASGEEIGSSSMRSRKEEKFTYS 128

Query: 99  --SSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQRE 156
             S+K S+KP+Y+RR++TAP+LR  ++D+     + +  ++ER  +A +L  + I +Q +
Sbjct: 129 HGSNKTSQKPSYSRRSVTAPRLR--MKDEHMIAANDLSQRRER--AAPTLKVSSILQQPK 184

Query: 157 VVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGF------ 208
            VS  ++P+IGE+NE++A  ++ +G +   +  +  EST SI  GDIFFSRDG       
Sbjct: 185 EVSHAKSPSIGEMNELIADGRINRG-LALNDPVV--ESTGSISPGDIFFSRDGLPVGMNN 241

Query: 209 ---AKNGGVQADVHPRPVIFPQRNSSSHHESRSNS-GLGIDQTPQRPSLPIPPITPANLV 264
              AK    +  + P+P    ++N  ++++   N+ G G+  T       +   T ++  
Sbjct: 242 NVTAKRNAFKNYISPKPTFVTKKNDDTYNQVEVNANGRGVSST----GGGLSTTTNSSAA 297

Query: 265 VSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSP 324
           VSR++S+ + S E SK S  S ++S S+ +F  NRRK  + D WFSCM+ G+CR +KS P
Sbjct: 298 VSRENSS-RISLENSKISDVSGRTSESTRRFIANRRKK-KNDIWFSCMRNGTCRTTKS-P 354

Query: 325 EKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI 384
           EKR FDE ++I+KA V+E L+PFWAD+H+P SLNGF  H+HEAQLLK+LV   + PHIL 
Sbjct: 355 EKRPFDEATYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILF 414

Query: 385 KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG 444
           KG  GSGKR L MALL EIYGD+CWNE+  TQV VP+ SSAHHVELN++ ++NAKYAL+G
Sbjct: 415 KGPRGSGKRVLMMALLREIYGDSCWNERKLTQVFVPLTSSAHHVELNLSSESNAKYALLG 474

Query: 445 LVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497
           L KEI    +I  E  N        ++V+ +VDKA E IQ+L++WIMDGY D+CK++LCC
Sbjct: 475 LAKEIGSEYSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCC 534

Query: 498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRK 557
           EDD  I+ESV + CKVIK++PPVTHEIM+VLI+IA KE+FDL M FA+KIATKAKQNLRK
Sbjct: 535 EDDSGILESVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRK 594

Query: 558 AIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
           AIMALEACKA NYPF+DDQPIP+GWE+ L+ELA+ IL DPS  RL  V+ KIQKLL + V
Sbjct: 595 AIMALEACKAHNYPFSDDQPIPIGWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDSV 654

Query: 618 HPKLIL--LVMHYI 629
           HPKLIL  LV  ++
Sbjct: 655 HPKLILQKLVEQFL 668

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540777|ref|XP_003538861.1| PREDICTED: uncharacterized protein LOC100795321 [Glycine max]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/694 (47%), Positives = 438/694 (63%), Gaps = 107/694 (15%)

Query: 4   SSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKN-------GGDLADD 56
           S R  RAS    +SS+  ++ +SGYEPSDTET+WQE P H+   +N          L + 
Sbjct: 24  SFRNHRASI--PNSSSFFRKGRSGYEPSDTETEWQEIPRHERERRNFTLEETKAFTLMNK 81

Query: 57  ----------SNLPRNISTSLSTSSVRH------ALKIDKDD----------------RF 84
                     S     +S++ + S  RH       L++ ++D                R 
Sbjct: 82  SPMALHRRHPSRFEHEVSSASTASRRRHHSKSPYKLRVAEEDVTVAASSSPITGLNTKRN 141

Query: 85  GSP------PKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKE 138
            SP       +  SP R ++     EKP+Y +R++TAP+LR       QE+N+      E
Sbjct: 142 ISPLPRPDLGRTVSPFREQR----IEKPHY-KRSVTAPRLRI------QESNNGGRTINE 190

Query: 139 RITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI 198
                       + +QRE  S FEAP++G +NEM+A  K+ + P +  ++ L  ESTDSI
Sbjct: 191 M-----------VHKQRE-ASPFEAPSVGIINEMIAQVKLSKDPTSDYSSVL--ESTDSI 236

Query: 199 --GDIFFSRDGF---AKNGGVQADVH------PRPVIFPQRNSSSHHESRSNSGLGIDQT 247
             GD+FFSR+     AKN  +   +       PRP +   R  S   ES+ N+G      
Sbjct: 237 HPGDLFFSRECNALQAKNSSLPRRIQQCEYFSPRPPVNTTRIPS---ESKGNNG------ 287

Query: 248 PQRPSLPIPPITPANLVVSRQSSNGKFSSEG---SKTSYASVKSSTSSTKFANNRRKTGQ 304
               ++ +  ++ +N  +S  +++ K S  G   S TS AS K++ S  KF  NR+K  Q
Sbjct: 288 --DINMKMNILSRSNTGLSSAATSRKGSDTGKPSSVTSEASGKTTASMKKFTANRKK-NQ 344

Query: 305 ADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHR 364
            D WFSCMK G+CR +K SPE+R  DE+SFI+KAVV+E L  FWADKHQP+SLNGFIC++
Sbjct: 345 KDTWFSCMKTGNCRTTKKSPERRPIDESSFIEKAVVVESLPQFWADKHQPASLNGFICNK 404

Query: 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424
           HEAQLLKELV  G+CPHIL+ G SGSGKR LAMA+L EIYGDAC N++   +V VP+ SS
Sbjct: 405 HEAQLLKELVSQGSCPHILLLGPSGSGKRELAMAILREIYGDACCNDQRLKKVSVPITSS 464

Query: 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN-------AMIVIYEVDKAAEHIQ 477
           +HH+EL+VN + NAKYALMGL+KEI +  AI PEVSN        +IV+Y+V KA ++IQ
Sbjct: 465 SHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQ 524

Query: 478 YLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF 537
           ++IKWI+D Y+D CKL+LCCEDD D+IE VK   KVI+VD P  HEI+EVLIQIA+ E+ 
Sbjct: 525 HIIKWIIDRYSDICKLVLCCEDDADLIEPVKNRFKVIQVDAPQNHEIIEVLIQIAKNEEI 584

Query: 538 DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADP 597
           DLS+ FAAKIATK+KQNLRKAIMALEAC A NYPF+++QPIP+GWEE++IE+AAEILADP
Sbjct: 585 DLSVNFAAKIATKSKQNLRKAIMALEACNAHNYPFSEEQPIPVGWEEIVIEVAAEILADP 644

Query: 598 SPKRLVMVRGKIQKLLAEFVHPKLIL--LVMHYI 629
           S  RL+ +RGK Q LL +FVHPKLIL  LV H +
Sbjct: 645 SFSRLLSIRGKFQMLLLDFVHPKLILQKLVEHLL 678

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495392|ref|XP_003516562.1| PREDICTED: uncharacterized protein LOC100817775 [Glycine max]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 315/665 (47%), Positives = 420/665 (63%), Gaps = 75/665 (11%)

Query: 22  KQNKSGYEPSDTETDWQESPWHDHNAKNGG-DLADDSNLPRNISTSLSTSSVRHALKIDK 80
           K+ +SGYEPSDTE++ QE P H+   +N   +   D  L      +L     RH  + + 
Sbjct: 19  KKGRSGYEPSDTESERQEIPRHERERRNFTLEETKDFTLMNKSPMALHR---RHPSRFEN 75

Query: 81  DDRFGSPPKFSSPARRRQSSK-------------------LSEKP--NYNRRAMTAPKLR 119
           +    S    +S  RRR  SK                    S  P    N R   +P  R
Sbjct: 76  EVSSASTASTASAPRRRHHSKSPYKLRVAEANVAVAVAGVASSSPIIGLNTRRNISPLSR 135

Query: 120 PVL-------RDKEQENNH---AIVGQKERITSASSLPRN--PIRRQREVVSKFEAPTIG 167
           P +       R++  E  H   ++   + RI  +++  R    + RQRE  S F+AP++G
Sbjct: 136 PDIGRTVSPFREQRIEKPHYKRSVTAPRLRIQESNNGGRTNEKVNRQRE-ASPFKAPSVG 194

Query: 168 ELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD--GF-AKNGGVQADVH--- 219
           E+NEM+A  K+ Q P +  ++ L  ESTDSI  GD+FFSR+   F AKN  +   +    
Sbjct: 195 EINEMIAQVKLSQDPTSDYSSVL--ESTDSIHPGDLFFSRECNAFQAKNSSLPRRIEQRE 252

Query: 220 ---PRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSS 276
              PRP +   R  S      ++  + ++            ++ +  V+S  +++ K S 
Sbjct: 253 HFSPRPPVNTTRVPSERKGKNADIKMNMNI-----------LSRSTTVLSTSATSRKGSG 301

Query: 277 EG---SKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETS 333
            G   S TS  S K++ S  KF  NR+K  Q D WFSCM+ G+CR ++ SPE+R  DE+S
Sbjct: 302 TGKPSSVTSEGSGKTTESMRKFTANRKK-NQKDTWFSCMRTGNCRTTRKSPERRPIDESS 360

Query: 334 FIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR 393
           FI++AVV+E L  FWADKH+P+SLNGFIC+R EAQLLKELV  G+CPHIL++G SGSGKR
Sbjct: 361 FIERAVVVESLPQFWADKHEPASLNGFICNRQEAQLLKELVSQGSCPHILLQGPSGSGKR 420

Query: 394 ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL 453
            LAMALL EIYGDAC N++   +V VP+ SS+HH+EL+VN ++NAKYALMGL+KEI +  
Sbjct: 421 ELAMALLREIYGDACCNDQRLKKVSVPITSSSHHMELDVNSESNAKYALMGLIKEISNIY 480

Query: 454 AITPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
           A+ PEVSN        +IV+Y+V KA ++I+++IKWI+D Y+D CKL+LCCEDD DIIE 
Sbjct: 481 AVAPEVSNINFKSDFKVIVLYDVHKAVDNIRHIIKWIIDRYSDICKLVLCCEDDADIIEH 540

Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
           VK   KVI+VD P  HEI+EVLIQIA+ E+ DLSM FAAKIATK+KQNLRKAIMALEACK
Sbjct: 541 VKNRFKVIQVDAPQNHEIIEVLIQIAKNEEIDLSMNFAAKIATKSKQNLRKAIMALEACK 600

Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL--L 624
           A NYPF+ +QPIP+GWEE++IE+AAEILADPS  RL+ +RGK Q LL +FVHPKLIL  L
Sbjct: 601 AHNYPFSAEQPIPVGWEEIVIEVAAEILADPSFSRLLSIRGKFQMLLLDFVHPKLILQKL 660

Query: 625 VMHYI 629
           V H +
Sbjct: 661 VGHLL 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094813|ref|XP_002310247.1| predicted protein [Populus trichocarpa] gi|222853150|gb|EEE90697.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 304/561 (54%), Positives = 387/561 (68%), Gaps = 38/561 (6%)

Query: 98  QSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREV 157
           + S+LSE+ N +RR   APK R  + DKEQ ++H    QK   + + S      R++   
Sbjct: 306 EDSRLSERQNASRRMAAAPKQR--VWDKEQVSSHDHKEQKGGRSPSPSSRSMSRRQRERE 363

Query: 158 VSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD----GFAKN 211
           VS  +A ++GELNE+VA+ K+ +  +        FEST+SI  GDIFFS D    G  KN
Sbjct: 364 VSHAKAASVGELNEIVANIKLSKDSMLDVP---NFESTESISPGDIFFSVDQTALGMQKN 420

Query: 212 GGVQ----ADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPP--ITPANLVV 265
           G ++     +++ +P  FP  +S     ++ N    ID   QR S       +T  +   
Sbjct: 421 GILKDNNVTNLYLKPASFPHMDSVLLQRNKVNGN--IDHNSQRTSTTSSGSRMTMTSASA 478

Query: 266 SRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPE 325
           + + S+ K SS+ SK S AS ++S S  KF  NR+K  Q +AWFSC+KKG C+ SKS P 
Sbjct: 479 ASRQSSSKLSSDSSKISDASGRTSGSLKKFTENRKKK-QTEAWFSCLKKGPCKTSKS-PG 536

Query: 326 KRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIK 385
           K+  DETSFI+KA V+E LR FWADKHQP SLNGF CH+HEAQ+L +LV   + PHIL+K
Sbjct: 537 KKRCDETSFIEKAFVVESLRQFWADKHQPGSLNGFTCHKHEAQILGQLVSHDSIPHILLK 596

Query: 386 GQSGSGKRALAMALLHEIYGDACWN----------EKWPTQVLVPVASSAHHVELNVNLQ 435
           G SGSGK+ALAMAL+ +I+GDACW+          ++   QV+VP+ SSAHH E+NVNL+
Sbjct: 597 GPSGSGKKALAMALIGDIFGDACWHKTHDLRYFQEQRGAAQVVVPITSSAHHAEINVNLE 656

Query: 436 ANAKYALMGLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYT 488
            NAK ALMGLVKEIR+  AITP+ SN        ++V+YEVDKA E+IQ L+KWIMD YT
Sbjct: 657 PNAKTALMGLVKEIRNTYAITPDFSNVNFKPDYKVLVLYEVDKAPENIQPLMKWIMDCYT 716

Query: 489 DSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIA 548
           D+CKLILCCEDD DI+E+VK  CKV+KVD PVTHEIMEVLIQIARKE+FDL M FAAKIA
Sbjct: 717 DACKLILCCEDDSDILETVKNRCKVLKVDAPVTHEIMEVLIQIARKEEFDLPMNFAAKIA 776

Query: 549 TKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGK 608
            K+KQNLRKAIMALEACKA NYPF+DDQPIP GWEEVL+ELA EIL DPSP +L   RGK
Sbjct: 777 AKSKQNLRKAIMALEACKAHNYPFSDDQPIPFGWEEVLVELATEILIDPSPNKLFSARGK 836

Query: 609 IQKLLAEFVHPKLILLVMHYI 629
           +++LL +FV+PKLILL   ++
Sbjct: 837 LKRLLVDFVNPKLILLKYTFL 857

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483535|ref|XP_003612054.1| Replication factor C subunit [Medicago truncatula] gi|355513389|gb|AES95012.1| Replication factor C subunit [Medicago truncatula]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 313/692 (45%), Positives = 412/692 (59%), Gaps = 100/692 (14%)

Query: 22  KQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDS------------------------ 57
           K+ +SGYEPSDTET+WQ++P H+   KN   L+ +                         
Sbjct: 21  KKGRSGYEPSDTETEWQDTPRHERGRKNNMTLSPEETKALYLRNKSPMTLHKRHPSRFEF 80

Query: 58  -------------NLPRNISTSLSTSSVRHA----LKIDKDDRFGSPPKFSSPARRRQSS 100
                        N PR    S S    R A      +D +D   S    +    RR  S
Sbjct: 81  EVPSSPSITGSVLNQPRRRHLSKSPYRPRVAHDNHYDVDGNDDDASLTNITGVNSRRNMS 140

Query: 101 KLSEKPNYNRRAMTAPKLRPVLRDKEQ-----ENNHAI--------VGQKERITSASSLP 147
            L  +P+  R       L P  R++EQ     EN  A         VG K     A + P
Sbjct: 141 PLP-RPDIGR------TLSPYNRNREQRAPYNENRKASSGLLEMDRVGTKSNYKRAVTAP 193

Query: 148 RNPIRRQREVV------------SKFEAPTIG--ELNEMVASAKMFQGPITTTNAALRFE 193
           R  +R Q++ V            S F+   +   E+NEM+A  K+ + P    ++AL  E
Sbjct: 194 R--LRDQQQTVQNTARTLKQREKSPFKTGLVKEREINEMIAEVKLSKNPTDDYSSAL--E 249

Query: 194 STDSI--GDIFFSRDGF---AKNGGVQADVH------PRPVIFPQRNSSSHHESRSNSGL 242
           STDSI  GD+FFSR+     AKN  +   V       PR VI      ++  ES    G+
Sbjct: 250 STDSIQTGDLFFSRECNALQAKNSSMPKKVQQYEYFSPRQVITTINPITNPCES-GKHGM 308

Query: 243 GIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKT 302
            ++      S  +   T A   + + S  GK S+  S  S AS K++ S  KF +NR+K 
Sbjct: 309 NMNMPRNYSSNVLLSRTSAATSIRKGSGTGKPSANSSVKSDASTKTTESMRKFTSNRKK- 367

Query: 303 GQADAWFSC-MKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFI 361
            Q DAWF+C M+ G+CR S+ SPE+R  DE S I++A+++E +   WADKH+P+SL+GFI
Sbjct: 368 NQKDAWFACMMRTGNCRISRKSPERRPIDEASLIERAIIVESIPQLWADKHKPASLDGFI 427

Query: 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421
           C++ EAQLLKELV  G+CPHIL+KG SGSGKR LAMA L EIYGDAC N+K   +V VP+
Sbjct: 428 CNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYGDACCNDKRTMKVSVPI 487

Query: 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAE 474
            SS+HH+E+NVN + NAKYALMGL+KEI +  AITPEVSN        +I+IY+V+KAAE
Sbjct: 488 TSSSHHMEVNVNSEPNAKYALMGLIKEISNIYAITPEVSNVNFKSDYKVIIIYDVEKAAE 547

Query: 475 HIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK 534
           +IQ+LIKWI+D Y+D CKL+LCCEDD +II  VK   KVI VD P THEI+EVL QIA K
Sbjct: 548 NIQHLIKWIIDRYSDICKLVLCCEDDENIIAQVKNRFKVINVDAPQTHEIIEVLTQIANK 607

Query: 535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEIL 594
           E+ DLSM FA KIATK+KQNLR+AI+ALEAC+A NYPF+++QPIP+GWE+++IE+A EIL
Sbjct: 608 EEMDLSMNFAMKIATKSKQNLREAILALEACRAHNYPFSEEQPIPVGWEKIVIEVATEIL 667

Query: 595 ADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
            DPS  RL+ +RGK Q LL +FVHP+LILL +
Sbjct: 668 TDPSFSRLLSIRGKFQMLLLDFVHPRLILLKL 699

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413923603|gb|AFW63535.1| hypothetical protein ZEAMMB73_411986 [Zea mays]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 273/682 (40%), Positives = 386/682 (56%), Gaps = 109/682 (15%)

Query: 23  QNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSN-LPR-------------NISTSLS 68
           ++KSGYEPSDTET+W ESPW+D      G LA + N LP+             NIS + +
Sbjct: 21  KHKSGYEPSDTETEWHESPWND------GALASNRNRLPKDSGRNDQVGTRRQNISPNCT 74

Query: 69  -------TSSVRHAL---KIDKDDRFGSP----------PKFSSPARRRQS----SKLSE 104
                  TS++R++    ++ +  R  SP              +P R R S    S+ S 
Sbjct: 75  LDYHAEKTSNLRYSRTPPRVTEQRRHPSPFTAVKNESRKKSSRTPPRFRSSMETFSRSSI 134

Query: 105 KPNYNR-RAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLP-RNPIRR--QREVVSK 160
           K  ++R R+++APKLRP               +KE    A + P  NP+    +REV   
Sbjct: 135 KARFSRNRSISAPKLRP--------------QEKEHPARAPAFPGSNPVSTHPEREVADN 180

Query: 161 FEAPTIG-----ELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGFAKNGG 213
            E  +       E++E++A+ K+   P +  N    F ST+SI  GDIFFSRD  A    
Sbjct: 181 IEEDSHAENCSQEISELIANGKL---PNSRYN-EYAFTSTESIPAGDIFFSRDCRAPLEK 236

Query: 214 VQADVHPRPVIFPQRNSSSHHE-----SRSNSG---------LGIDQTPQRPSLPIPPIT 259
               ++     F   +S+ H E     ++SN G          G+ +T  + S       
Sbjct: 237 TSTKLNNIDQSFTS-DSNVHTENDGTVTQSNLGQPSQFVSARTGLSRTTTKSSYATGRHC 295

Query: 260 PANLVVSRQS--SNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSC 317
             +   +  S  SNGK S E  K S  + K      KF +++    Q D W  CM   +C
Sbjct: 296 QMSTTTTLSSPYSNGKLSGESGKFSEITGKLVGGVMKFTSSK---VQNDTWLPCMTGKAC 352

Query: 318 RKSKSSPEKRAFD-ETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD 376
           RKS++S  K+  + E+SFIQKA+VIEK+R FWADK++P +LNGF CHR + Q LK+ V  
Sbjct: 353 RKSRTSNNKKNDESESSFIQKALVIEKIRLFWADKYRPQNLNGFTCHREQVQQLKQSVSA 412

Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWN-----------EKWPTQVLVPVASSA 425
             CPHI+ KG  GSGKR+L  A+L EI+GD+  N                 +LVPV+SS 
Sbjct: 413 EFCPHIIFKGPPGSGKRSLCRAVLTEIFGDSSLNVSHYLKSCNGQGSISVPILVPVSSSN 472

Query: 426 HHVELNVNLQA-NAKYALMGLVKEIRDNLAITPEV---SNAMIVIYEVDKAAEHIQYLIK 481
           +HVEL++  Q+ NA+YALM L  E+ D   IT  +   S  +IV+Y+VDK +++ Q LIK
Sbjct: 473 NHVELHMRFQSKNARYALMTLANEMSDKCKITEPIVRKSFKVIVLYDVDKVSQNNQRLIK 532

Query: 482 WIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM 541
           WI+D  +D+CK+I+ C+D+ ++++S+K+ CK+I +  P T E++++L   +RKE FDL  
Sbjct: 533 WIIDSSSDACKIIMTCQDESNLLDSIKSRCKIISIGVPSTREVVDILTYTSRKESFDLPT 592

Query: 542 TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKR 601
           +FA  IA ++++NLR+AI+ALEACKA NYPF D Q IPLGWEEVL ELA EIL DP+PKR
Sbjct: 593 SFATTIANQSRKNLREAILALEACKANNYPFIDGQAIPLGWEEVLEELAVEILDDPAPKR 652

Query: 602 LVMVRGKIQKLLAEFVHPKLIL 623
           L + RGK+QKLL EFV PKLIL
Sbjct: 653 LFLARGKLQKLLVEFVPPKLIL 674

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
TAIR|locus:2180315	354	EMB2775 "EMBRYO DEFECTIVE 2775	0.438	0.779	0.363	1.4e-46
MGI|MGI:1916513	356	Rfc3 "replication factor C (ac	0.438	0.775	0.304	9.9e-39
UNIPROTKB|F1P3C0	356	RFC3 "Uncharacterized protein"	0.438	0.775	0.307	7.6e-38
RGD|1306832	356	Rfc3 "replication factor C (ac	0.438	0.775	0.301	1e-37
ZFIN|ZDB-GENE-020809-3	356	rfc3 "replication factor C (ac	0.438	0.775	0.311	1.3e-37
DICTYBASE|DDB_G0293702	347	rfc3 "replication factor C sub	0.435	0.789	0.328	2.3e-37
UNIPROTKB|F1RSR4	356	RFC3 "Uncharacterized protein"	0.438	0.775	0.297	2.3e-37
UNIPROTKB|E2R7L0	356	RFC3 "Uncharacterized protein"	0.438	0.775	0.294	3.1e-37
UNIPROTKB|Q2TBV1	356	RFC3 "Replication factor C sub	0.438	0.775	0.294	4e-37
UNIPROTKB|P40938	356	RFC3 "Replication factor C sub	0.438	0.775	0.294	5.3e-37

TAIR|locus:2180315 EMB2775 "EMBRYO DEFECTIVE 2775" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 106/292 (36%), Positives = 165/292 (56%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P SL+  I H   AQ LK+LV + +CPH+L  G SGSGK+ L MALL +IYG +
Sbjct:     3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query:   408 CW-----NEKWPTQ-------VLVPVASSAHHVELNVNLQA-NAKYALMGLVKEIRDNLA 454
                    N  W          + +   SS +HVEL  +      +Y +  ++KE+  N  
Sbjct:    63 AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query:   455 ITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
             I  +      ++V+ EVDK +   Q+ ++  M+ Y+ SC+LILCC     + E++K+ C 
Sbjct:   123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query:   513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
              ++++ P   EI++VL  +A+KE   L   FAA+IA K+ ++LR+AI++LE C+  NYPF
Sbjct:   183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPF 242

Query:   573 ADDQPI-PLGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
               +Q I P+ W             + SPK+L  VRGK+ +LL   + P++IL
Sbjct:   243 TGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVIL 294

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

MGI|MGI:1916513 Rfc3 "replication factor C (activator 1) 3" [Mus musculus (taxid:10090)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 88/289 (30%), Positives = 154/289 (53%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++PSSL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
             + +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 SSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + RKE   L  T A ++A K+ +NLRKA++  EAC+   YPF +D
Sbjct:   184 VPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1P3C0 RFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.6e-38, P = 7.6e-38
 Identities = 89/289 (30%), Positives = 158/289 (54%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++PS+L+    HR +A  L+ LV  G+ PH+L+ G SG+GK+   M LL E+YG  
Sbjct:     4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63

Query:   408 CWNEKW-------PTQVLVPVASSA--HHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +        P++  + +++ A  +H+E+N +   N  +  +  L+K +  +  L  
Sbjct:    64 VEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
             + +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     II  +++ C  ++
Sbjct:   124 STQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  E+C+   YPF+ D
Sbjct:   184 VPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPFSAD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP + W               SP+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QDIPEMDWEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

RGD|1306832 Rfc3 "replication factor C (activator 1) 3" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 87/289 (30%), Positives = 153/289 (52%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++PSSL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
             + +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  I+
Sbjct:   124 SSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE   L    A ++A K+ +NLRKA++  EAC+   YPF +D
Sbjct:   184 VPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIM 292

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046683 "response to organophosphorus" evidence=IEA;ISO

ZFIN|ZDB-GENE-020809-3 rfc3 "replication factor C (activator 1) 3" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 90/289 (31%), Positives = 150/289 (51%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P+SL     H+ +A  LK LV  G+ PH+L+ G SG+GK+   M LL E+YG  
Sbjct:     4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63

Query:   408 CWNEKWPTQ-VLVP--------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITP 457
                 +   Q +  P          +S +H+E+N +   N+ +  +  L+K +  +  I  
Sbjct:    64 VEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQS 123

Query:   458 EVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
                    ++++ EVD+  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 SAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   E+  VL  + RKE   L    A +IA K+ +NLRKA++  EAC+   YPF+ D
Sbjct:   184 VPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               SP+RL+ VR ++ +LL   + P++I+
Sbjct:   244 QDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIM 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0293702 rfc3 "replication factor C subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 2.3e-37, P = 2.3e-37
 Identities = 95/289 (32%), Positives = 153/289 (52%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P+SL+    H   +  LK ++  G+ PH+L+ G SG+GK+   +A+L EIYG  
Sbjct:     3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62

Query:   408 CWNEK-------WPTQ---VLVPVASSAHHVELNVNLQANA--KYALMGLVKEIRDNLAI 455
                 K        PT    + +   SS +H+E+N   +A +  +  +  ++KEI  +  I
Sbjct:    63 ALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPG-EAGSYDRVVIQTIIKEIAQSPPI 121

Query:   456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
                   A  ++++ EVDK ++  Q+ ++  M+ Y   C+LILCC+    +I+ +K+ C  
Sbjct:   122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181

Query:   514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
             I+V  P   EI +VL ++A  E FDL    A  +A ++  NLR A+M LE+ KA  YPF 
Sbjct:   182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241

Query:   574 DDQPIPLGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLI 622
               +   L W             + SP RL +VRGK+ +LL   + P+LI
Sbjct:   242 STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELI 290

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0031391 "Elg1 RFC-like complex" evidence=ISS

GO:0031389 "Rad17 RFC-like complex" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0006272 "leading strand elongation" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1RSR4 RFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 402 (146.6 bits), Expect = 2.3e-37, P = 2.3e-37
 Identities = 86/289 (29%), Positives = 150/289 (51%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
               +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 NSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE   L    A K+A K+ +NLRKA++  EAC+   YPF  D
Sbjct:   184 VPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPFTVD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R7L0 RFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 401 (146.2 bits), Expect = 3.1e-37, P = 3.1e-37
 Identities = 85/289 (29%), Positives = 152/289 (52%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
               +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  EAC+   YPF  D
Sbjct:   184 VPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W             + +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q2TBV1 RFC3 "Replication factor C subunit 3" [Bos taurus (taxid:9913)]

 Score = 400 (145.9 bits), Expect = 4.0e-37, P = 4.0e-37
 Identities = 85/289 (29%), Positives = 152/289 (52%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
             + +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 SSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  EAC+   YPF  D
Sbjct:   184 VPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0005634 "nucleus" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P40938 RFC3 "Replication factor C subunit 3" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 5.3e-37, P = 5.3e-37
 Identities = 85/289 (29%), Positives = 151/289 (52%)

Query:   348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
             W DK++P SL     H+ +A  L+ LV  G+ PH+L+ G SG+GK+   M +L E+YG  
Sbjct:     4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query:   408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
                 +   Q +         +   +S +H+E+N +   N+ +  +  ++K +  +  L  
Sbjct:    64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123

Query:   456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
               +    ++++ EVDK  +  Q+ ++  M+ Y  +C+LILCC     +I  +++ C  ++
Sbjct:   124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183

Query:   516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
             V  P   +I  VL  + +KE  +L    A ++A K+ +NLRKA++  EAC+   YPF  D
Sbjct:   184 VPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243

Query:   576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
             Q IP   W               +P+RL+ VRG++ +LL   + P++I+
Sbjct:   244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IDA;TAS

GO:0003689 "DNA clamp loader activity" evidence=TAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0046683 "response to organophosphorus" evidence=IEP

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	629
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	5e-16
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	2e-14
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	2e-07
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	1e-05
PLN03025	319	PLN03025, PLN03025, replication factor C subunit;	4e-05

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score = 79.3 bits (196), Expect = 5e-16
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 18/232 (7%)

Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
           P W +K++P+ L   +      + L   V   N PH+L++G  GSGK A   AL  E+YG
Sbjct: 3   PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62

Query: 406 DACWNEKWPTQVLVPVAS--SAHHVELNVN------LQANAKY--ALMGLVKEIRDNLAI 455
           D  W   +       VA         L  +      L  + +   + +   K +    A 
Sbjct: 63  DP-WENNF---TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYAS 118

Query: 456 TPEVSNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
              +S     I  +D A    E  Q  ++ IM+ Y+ +C+ I+       +I  +++ C 
Sbjct: 119 YRPLSADYKTIL-LDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCL 177

Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
            +    P   E+++VL  IA  E  D        IA  A  +LRKAI+ L+ 
Sbjct: 178 PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQT 229

Length = 337

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
            W +K++P +L+  +      + LK  V + N PH+L  G  G+GK   A+AL  E+YG+
Sbjct: 6   IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65

Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD---NLAITPEVSNA- 462
             W E              + +ELN + +          +  IR+     A T  V  A 
Sbjct: 66  D-WRE--------------NFLELNASDERG--------IDVIRNKIKEFARTAPVGGAP 102

Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
             +I + E D      Q  ++  M+ Y+ + + IL C     II+ +++ C V +  P  
Sbjct: 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162

Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
              + E L  IA  E  +++      I   ++ ++RKAI AL+A  A  
Sbjct: 163 KEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATG 211

Length = 319

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 30/117 (25%), Positives = 56/117 (47%)

Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
            S  +I + E D   +  Q  ++  M+ ++ + + IL C     IIE +++ C + +  P
Sbjct: 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 688

Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
               +I + L  IA  E  +L+      I   A+ ++R+AI  L+A  AL+    D+
Sbjct: 689 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDE 745

Length = 846

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 43/229 (18%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGD 406
           W  K++PS+++  I    + +  K +V  G  P+ +L     G+GK  +A AL +E+  +
Sbjct: 11  WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE 70

Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-----AITPEVSN 461
                     VL    S        ++               +R+ L      ++     
Sbjct: 71  ----------VLFVNGSDC-----RIDF--------------VRNRLTRFASTVSLTGGG 101

Query: 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
            +I+I E D+      Q  ++  M+ Y+ +C  I+   +   IIE +++ C+VI    P 
Sbjct: 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPT 161

Query: 521 THEIMEVLIQ-------IARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
             E +E++ Q       I   E  ++ M   A +  K   + R+ I  L
Sbjct: 162 KEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINEL 210

Length = 316

>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P+ L+  + +      L+ +  DGN P++++ G  G+GK    +AL HE+ G  
Sbjct: 3   WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 62

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
                +   VL   AS    +++  N            +K         P   + ++++ 
Sbjct: 63  -----YKEAVLELNASDDRGIDVVRN-----------KIKMFAQKKVTLPPGRHKIVILD 106

Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++  M+ Y+++ +  L C     IIE +++ C +++       EI+  
Sbjct: 107 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 166

Query: 528 LIQIARKE 535
           L+++   E
Sbjct: 167 LMKVVEAE 174

Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	100.0
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	100.0
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	100.0
PLN03025	319	replication factor C subunit; Provisional	100.0
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.98
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.98
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.98
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.98
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.98
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.97
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.97
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.97
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.97
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.97
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.96
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.96
PRK12402	337	replication factor C small subunit 2; Reviewed	99.96
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.96
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.96
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.96
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.96
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.96
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.96
PRK04195	482	replication factor C large subunit; Provisional	99.96
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.96
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.96
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.95
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.95
PHA02544	316	44 clamp loader, small subunit; Provisional	99.95
PRK13342	413	recombination factor protein RarA; Reviewed	99.93
PRK04132	846	replication factor C small subunit; Provisional	99.92
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.92
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.92
PRK13341	725	recombination factor protein RarA/unknown domain f	99.92
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.92
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.91
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.9
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.9
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.89
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.89
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.89
KOG2028	554	consensus ATPase related to the helicase subunit o	99.89
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.88
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.87
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.86
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.86
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.84
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.84
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.84
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.84
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.83
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.83
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.83
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.83
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.83
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.82
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.81
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	99.8
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.79
PRK08084	235	DNA replication initiation factor; Provisional	99.79
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.77
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	99.77
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.76
CHL00181	287	cbbX CbbX; Provisional	99.76
PRK08727	233	hypothetical protein; Validated	99.76
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.76
PRK06893	229	DNA replication initiation factor; Validated	99.76
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.74
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.73
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.73
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.73
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.73
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.72
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.72
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.72
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.72
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.72
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.72
PRK12422	445	chromosomal replication initiation protein; Provis	99.71
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.71
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.71
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.71
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.7
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.69
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.69
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.69
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.69
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.69
CHL00195	489	ycf46 Ycf46; Provisional	99.68
CHL00176	638	ftsH cell division protein; Validated	99.68
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.68
PRK05642	234	DNA replication initiation factor; Validated	99.68
PRK06620	214	hypothetical protein; Validated	99.68
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.67
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.67
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.66
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.66
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.66
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.65
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.65
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	99.65
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.65
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.64
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.64
PRK09087	226	hypothetical protein; Validated	99.63
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.61
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.61
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.61
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.6
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.6
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.58
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.57
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.57
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.57
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.57
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.56
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.56
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.55
PRK10865	857	protein disaggregation chaperone; Provisional	99.55
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.54
CHL00095	821	clpC Clp protease ATP binding subunit	99.53
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.53
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.51
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.51
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.5
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.49
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.49
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.47
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.47
CHL00206	2281	ycf2 Ycf2; Provisional	99.47
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.46
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.45
PF00004	132	AAA: ATPase family associated with various cellula	99.45
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.43
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.42
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.42
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.4
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.39
PRK06581	263	DNA polymerase III subunit delta'; Validated	99.39
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.38
CHL00095	821	clpC Clp protease ATP binding subunit	99.37
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.35
PRK13531	498	regulatory ATPase RavA; Provisional	99.34
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.33
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.32
PRK10865	857	protein disaggregation chaperone; Provisional	99.31
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.31
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.3
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.3
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.29
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.27
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.27
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.26
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.25
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.25
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	99.24
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.23
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	99.21
COG0714	329	MoxR-like ATPases [General function prediction onl	99.2
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.19
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.18
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.18
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.17
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.16
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.16
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.15
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.14
PRK08485	206	DNA polymerase III subunit delta'; Validated	99.09
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.09
PHA02244	383	ATPase-like protein	99.06
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.06
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.06
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.05
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.02
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.0
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.0
smart00350	509	MCM minichromosome maintenance proteins.	98.99
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.98
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.98
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.97
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.97
PRK12377	248	putative replication protein; Provisional	98.96
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	98.95
PRK15424	538	propionate catabolism operon regulatory protein Pr	98.94
PRK05022	509	anaerobic nitric oxide reductase transcription reg	98.94
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	98.94
PRK07952	244	DNA replication protein DnaC; Validated	98.93
PRK08116	268	hypothetical protein; Validated	98.9
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.9
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	98.89
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.87
PRK13765	637	ATP-dependent protease Lon; Provisional	98.87
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.84
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.8
smart00382	148	AAA ATPases associated with a variety of cellular	98.8
PF07726	131	AAA_3: ATPase family associated with various cellu	98.79
PRK06921	266	hypothetical protein; Provisional	98.78
PF13173	128	AAA_14: AAA domain	98.78
COG2204	464	AtoC Response regulator containing CheY-like recei	98.77
PRK08181	269	transposase; Validated	98.77
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.76
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.75
PRK14700	300	recombination factor protein RarA; Provisional	98.73
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.71
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.71
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.69
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	98.68
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.68
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	98.68
PRK06835	329	DNA replication protein DnaC; Validated	98.64
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.63
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.63
PRK06526	254	transposase; Provisional	98.63
PRK15115	444	response regulator GlrR; Provisional	98.63
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	98.63
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.58
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.58
TIGR01128	302	holA DNA polymerase III, delta subunit. subunit ar	98.58
PRK08939	306	primosomal protein DnaI; Reviewed	98.55
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.55
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.51
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.47
PRK07452	326	DNA polymerase III subunit delta; Validated	98.47
PRK05574	340	holA DNA polymerase III subunit delta; Reviewed	98.47
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.46
PRK09862	506	putative ATP-dependent protease; Provisional	98.45
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.45
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.41
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.41
PF05729	166	NACHT: NACHT domain	98.4
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.4
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	98.38
PRK06585	343	holA DNA polymerase III subunit delta; Reviewed	98.38
PRK09183	259	transposase/IS protein; Provisional	98.38
PHA00729	226	NTP-binding motif containing protein	98.38
PRK05629	318	hypothetical protein; Validated	98.36
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.35
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.31
PRK04132	846	replication factor C small subunit; Provisional	98.3
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.27
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.27
PHA02774	613	E1; Provisional	98.26
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.22
PRK07914	320	hypothetical protein; Reviewed	98.2
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	98.17
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.15
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.14
PRK05907	311	hypothetical protein; Provisional	98.11
PRK08487	328	DNA polymerase III subunit delta; Validated	98.07
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.06
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.05
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.02
PRK04841	903	transcriptional regulator MalT; Provisional	98.0
PF14516	331	AAA_35: AAA-like domain	97.91
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.88
PF06144	172	DNA_pol3_delta: DNA polymerase III, delta subunit;	97.86
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.85
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	97.85
COG1241	682	MCM2 Predicted ATPase involved in replication cont	97.77
PRK10536	262	hypothetical protein; Provisional	97.77
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.76
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.76
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.71
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.71
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.71
PHA02624	647	large T antigen; Provisional	97.69
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.66
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	97.65
COG1466	334	HolA DNA polymerase III, delta subunit [DNA replic	97.64
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.63
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.6
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.59
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	97.56
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	97.53
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	97.5
PRK13695	174	putative NTPase; Provisional	97.49
COG4650	531	RtcR Sigma54-dependent transcription regulator con	97.48
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.46
PRK15455	644	PrkA family serine protein kinase; Provisional	97.42
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.4
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.39
PRK04296	190	thymidine kinase; Provisional	97.37
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.35
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.33
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	97.31
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.3
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.27
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	97.25
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.23
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.22
smart00487	201	DEXDc DEAD-like helicases superfamily.	97.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.17
PTZ00202	550	tuzin; Provisional	97.15
COG1485	367	Predicted ATPase [General function prediction only	97.13
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.05
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.02
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.0
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.99
cd01128	249	rho_factor Transcription termination factor rho is	96.99
PRK09376	416	rho transcription termination factor Rho; Provisio	96.99
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.98
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	96.97
PRK14528	186	adenylate kinase; Provisional	96.96
PRK08118	167	topology modulation protein; Reviewed	96.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.94
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.93
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	96.91
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.9
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.89
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.87
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.84
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	96.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.8
PRK10875	615	recD exonuclease V subunit alpha; Provisional	96.8
KOG1808	1856	consensus AAA ATPase containing von Willebrand fac	96.79
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.77
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.76
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	96.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.76
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.76
PRK13889	988	conjugal transfer relaxase TraA; Provisional	96.75
PRK14532	188	adenylate kinase; Provisional	96.75
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.73
PRK14974	336	cell division protein FtsY; Provisional	96.73
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.73
KOG2383	467	consensus Predicted ATPase [General function predi	96.73
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.72
PHA02530	300	pseT polynucleotide kinase; Provisional	96.72
PRK06762	166	hypothetical protein; Provisional	96.71
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.7
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	96.68
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	96.63
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.6
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.6
TIGR00767	415	rho transcription termination factor Rho. Members	96.58
PRK13808	333	adenylate kinase; Provisional	96.57
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	96.56
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	96.56
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.56
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.55
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.55
PF13245	76	AAA_19: Part of AAA domain	96.54
PRK00131	175	aroK shikimate kinase; Reviewed	96.54
TIGR02533	486	type_II_gspE general secretory pathway protein E.	96.54
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.54
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.53
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.53
PRK07261	171	topology modulation protein; Provisional	96.52
PRK00625	173	shikimate kinase; Provisional	96.52
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.51
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.5
PRK14527	191	adenylate kinase; Provisional	96.5
KOG0479	818	consensus DNA replication licensing factor, MCM3 c	96.49
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.48
PRK06067	234	flagellar accessory protein FlaH; Validated	96.47
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	96.47
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.46
PRK11823	446	DNA repair protein RadA; Provisional	96.45
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.45
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.45
COG4178	604	ABC-type uncharacterized transport system, permeas	96.43
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.41
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.4
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.39
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	96.34
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.32
PRK13947	171	shikimate kinase; Provisional	96.31
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.3
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.29
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.28
PRK06547	172	hypothetical protein; Provisional	96.27
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.25
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.25
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.24
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.2
PRK10436	462	hypothetical protein; Provisional	96.19
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.19
PRK03839	180	putative kinase; Provisional	96.18
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.15
PRK13826	1102	Dtr system oriT relaxase; Provisional	96.13
PF13479	213	AAA_24: AAA domain	96.13
COG5275	276	BRCT domain type II [General function prediction o	96.13
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.13
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	96.11
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.09
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	96.08
PRK12608	380	transcription termination factor Rho; Provisional	96.06
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.06
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.05
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.04
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.04
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.04
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.03
PF09439	181	SRPRB: Signal recognition particle receptor beta s	96.03
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.03
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.02
PRK06696	223	uridine kinase; Validated	96.02
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	96.01
PRK14530	215	adenylate kinase; Provisional	96.01
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	96.01
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.99
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.98
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	95.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	95.96
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	95.93
PRK13709	1747	conjugal transfer nickase/helicase TraI; Provision	95.92
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	95.91
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	95.9
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	95.9
PRK14712	1623	conjugal transfer nickase/helicase TraI; Provision	95.89
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.89
PLN02674	244	adenylate kinase	95.89
PRK14531	183	adenylate kinase; Provisional	95.88
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.87
PLN02840	421	tRNA dimethylallyltransferase	95.86
PRK12337	475	2-phosphoglycerate kinase; Provisional	95.86
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	95.85
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.85
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	95.84
cd03246	173	ABCC_Protease_Secretion This family represents the	95.84
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.8
PRK02496	184	adk adenylate kinase; Provisional	95.79
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.79
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	95.79
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	95.78
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	95.78
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	95.77
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	95.76
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.76
COG3899	849	Predicted ATPase [General function prediction only	95.76
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	95.73
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	95.67
TIGR01587	358	cas3_core CRISPR-associated helicase Cas3. This mo	95.67
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	95.66
PRK13949	169	shikimate kinase; Provisional	95.66
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.66
PRK08233	182	hypothetical protein; Provisional	95.65
cd04105	203	SR_beta Signal recognition particle receptor, beta	95.65
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.65
PRK05541	176	adenylylsulfate kinase; Provisional	95.63
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	95.62
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	95.6
COG1100	219	GTPase SAR1 and related small G proteins [General	95.59
PRK14709	469	hypothetical protein; Provisional	95.59
PRK14529	223	adenylate kinase; Provisional	95.58
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.58
cd03239	178	ABC_SMC_head The structural maintenance of chromos	95.58
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.58
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	95.56
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.55
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.55
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.55
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.55
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.54
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.53
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.53
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.53
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	95.52
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	95.48
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	95.47
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	95.47
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.46
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	95.43
PRK04040	188	adenylate kinase; Provisional	95.42
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.39
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	95.39
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.37
PRK06217	183	hypothetical protein; Validated	95.35
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.35
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.34
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.34
PRK00279	215	adk adenylate kinase; Reviewed	95.34
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.34
PRK13851	344	type IV secretion system protein VirB11; Provision	95.33
PRK10263	1355	DNA translocase FtsK; Provisional	95.31
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.31
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.3

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=100.00  E-value=1.6e-43  Score=356.29  Aligned_cols=281  Identities=34%  Similarity=0.584  Sum_probs=261.1

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC---------CCCccc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNE---------KWPTQV  417 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~---------~~~~~v  417 (629)
                      +|.+||||++|+.++++++....|+.+...+..||+|||||+|.||.|.+.++.++++|.+.++-         ....++
T Consensus         2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl   81 (351)
T KOG2035|consen    2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL   81 (351)
T ss_pred             cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence            79999999999999999999999999999999999999999999999999999999999876651         222458


Q ss_pred             cccccCCcceEEEeccc-chhhHHHHHHHHHHHHHHhccCcCCC--CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE
Q 036742          418 LVPVASSAHHVELNVNL-QANAKYALMGLVKEIRDNLAITPEVS--NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI  494 (629)
Q Consensus       418 ~~~i~sS~~vleInas~-~~~~k~~l~~~lrei~~~~~~~~~~~--~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I  494 (629)
                      ++..++|.+++|+++++ +..+..+++++++++.+..+.....+  .+|++|.|+|.|+.++|++|++.||.|..++++|
T Consensus        82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI  161 (351)
T KOG2035|consen   82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI  161 (351)
T ss_pred             EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence            99999999999999975 55667788999999998877665543  4699999999999999999999999999999999


Q ss_pred             EEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC
Q 036742          495 LCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD  574 (629)
Q Consensus       495 LitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~  574 (629)
                      ++||..+.|.++|+|||..++++.|+++++..+|..++.++++.++.+.+..|++.++||+|+||-+|++++..++.+..
T Consensus       162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a  241 (351)
T KOG2035|consen  162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA  241 (351)
T ss_pred             EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             C-CCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          575 D-QPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       575 ~-~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      + +.++ .+|+..+.+++..++.++++..|.++|+.+|+||.+|+||.+||+.|.
T Consensus       242 ~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll  296 (351)
T KOG2035|consen  242 NSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELL  296 (351)
T ss_pred             cCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            5 6666 899999999999999999999999999999999999999999999885

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=100.00  E-value=3e-39  Score=318.70  Aligned_cols=231  Identities=21%  Similarity=0.407  Sum_probs=204.8

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ...+|++||||..+.||+|+++.++.|+.+.+.|+.||++|.|||||||||.+.++|++|.|..+.+             
T Consensus        13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-------------   79 (333)
T KOG0991|consen   13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-------------   79 (333)
T ss_pred             ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-------------
Confidence            3456999999999999999999999999999999999999999999999999999999999875422             


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                        -++|+|+++.+|++ ++...++.+.+.....+.+..+|||+||+|.|+.++|.+|++.||-|+..++|+|+||...+|
T Consensus        80 --~vLELNASdeRGID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KI  156 (333)
T KOG0991|consen   80 --AVLELNASDERGID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKI  156 (333)
T ss_pred             --HhhhccCccccccH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhh
Confidence              28999999999984 455555555555556667888999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--------CCC
Q 036742          504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF--------ADD  575 (629)
Q Consensus       504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~--------~~~  575 (629)
                      .++|.|||.+++|..+++.++..+|..+++.|++.++++.+++|+..+.||+|+++|.||.+.. ++.+        ..+
T Consensus       157 iEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~-g~g~Vn~enVfKv~d  235 (333)
T KOG0991|consen  157 IEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVN-GFGLVNQENVFKVCD  235 (333)
T ss_pred             hhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhc-cccccchhhhhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999998764 3322        257


Q ss_pred             CCCchhHHHHHHHHHH
Q 036742          576 QPIPLGWEEVLIELAA  591 (629)
Q Consensus       576 ~~~~~~~ek~l~ei~~  591 (629)
                      +|.|..+++.+..+..
T Consensus       236 ~PhP~~v~~ml~~~~~  251 (333)
T KOG0991|consen  236 EPHPLLVKKMLQACLK  251 (333)
T ss_pred             CCChHHHHHHHHHHHh
Confidence            7888777777765543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=100.00  E-value=1.4e-38  Score=325.22  Aligned_cols=261  Identities=20%  Similarity=0.358  Sum_probs=212.8

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      .+.|++||||++|+|++||+.++..|+..+..+..||+|||||||||||++|+++|++|+|+...+              
T Consensus        23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~--------------   88 (346)
T KOG0989|consen   23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP--------------   88 (346)
T ss_pred             ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc--------------
Confidence            456999999999999999999999999999998899999999999999999999999999966533              


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCc------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITP------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ..++++|+++.+|+. ++.+.++.+.+......      ....+||||||+|.|+.++|++|+++||.++..++|||+||
T Consensus        89 ~rvl~lnaSderGis-vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn  167 (346)
T KOG0989|consen   89 CRVLELNASDERGIS-VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN  167 (346)
T ss_pred             cchhhhccccccccc-chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence            238999999999975 33333333332222211      11236999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD----  574 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~----  574 (629)
                      ..+.|+.+|.|||..+.|+++.++.+..+|+.||.+||+.+++++++.|+..++||+|+|+.+||.+...+..+..    
T Consensus       168 ylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~  247 (346)
T KOG0989|consen  168 YLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVN  247 (346)
T ss_pred             ChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998876554431    


Q ss_pred             ---CCCCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          575 ---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       575 ---~~~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                         ....+   .+.+.++....+..+++....    ...+++..+..|-.++.+||
T Consensus       248 e~~~GvVp---~~~l~~lle~a~S~d~~~~v~----~~Rei~~sg~~~~~lmsQLa  296 (346)
T KOG0989|consen  248 EELAGVVP---DEKLLDLLELALSADTPNTVK----RVREIMRSGYSPLQLMSQLA  296 (346)
T ss_pred             HHHhccCC---HHHHHHHHHHHHccChHHHHH----HHHHHHHhccCHHHHHHHHH
Confidence               11111   233445555555555554443    34478888888888888876

>PLN03025 replication factor C subunit; Provisional

Probab=100.00  E-value=1.3e-35  Score=313.94  Aligned_cols=262  Identities=18%  Similarity=0.315  Sum_probs=209.9

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .+|++||||.+|+|++||+++++.|+.++..+..||+||+||||||||++|+++|++++|..+               ..
T Consensus         1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~---------------~~   65 (319)
T PLN03025          1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY---------------KE   65 (319)
T ss_pred             CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC---------------cc
Confidence            379999999999999999999999999999999999999999999999999999999977643               12


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchH
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE  505 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~  505 (629)
                      .++++|+++.++.. .+.+.++..............+||||||+|.|+..++++|++++|.+...++||++||....+.+
T Consensus        66 ~~~eln~sd~~~~~-~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~  144 (319)
T PLN03025         66 AVLELNASDDRGID-VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE  144 (319)
T ss_pred             ceeeecccccccHH-HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccch
Confidence            37899998777653 23333333322211112234679999999999999999999999999999999999999999999


Q ss_pred             HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC---CCchhH
Q 036742          506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ---PIPLGW  582 (629)
Q Consensus       506 aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~---~~~~~~  582 (629)
                      +|++||..++|.+++.+++..+|..+|.++|+.++++++.+|++.++||+|.+++.||.+......+....   ......
T Consensus       145 ~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~  224 (319)
T PLN03025        145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPH  224 (319)
T ss_pred             hHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999997654311111000   000111


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          583 EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       583 ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ...+.++...+..+    .+...+..+++++..+.++..|+..|.
T Consensus       225 ~~~i~~~i~~~~~~----~~~~a~~~l~~ll~~g~~~~~Il~~l~  265 (319)
T PLN03025        225 PLHVKNIVRNCLKG----KFDDACDGLKQLYDLGYSPTDIITTLF  265 (319)
T ss_pred             HHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            33455555554443    356677889999999999999998774

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.5e-33  Score=305.32  Aligned_cols=273  Identities=14%  Similarity=0.137  Sum_probs=214.3

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccc
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVL  418 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~  418 (629)
                      ..+.|++||||++|+||+||++++..|+.++..+..+| +||+||+||||||+|+++|+.++|.....    ..|..|..
T Consensus         4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~   83 (484)
T PRK14956          4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE   83 (484)
T ss_pred             CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence            35779999999999999999999999999999999987 79999999999999999999998753111    12333444


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      +....+..++++++....++     +.++++....... ..+..+|+||||||.|+.+++++|++++|+++..+.||++|
T Consensus        84 i~~g~~~dviEIdaas~~gV-----d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT  158 (484)
T PRK14956         84 ITKGISSDVLEIDAASNRGI-----ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT  158 (484)
T ss_pred             HHccCCccceeechhhcccH-----HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence            45555667889998655554     3345544433322 23456799999999999999999999999999999999999


Q ss_pred             cCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742          498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP  577 (629)
Q Consensus       498 N~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~  577 (629)
                      +....|.++|+|||+.+.|.+++.+++.++|.++|.++|+.++++++..|++.++||+|.|+++|+.+.....    +..
T Consensus       159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~----~~i  234 (484)
T PRK14956        159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD----SKL  234 (484)
T ss_pred             CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC----CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999987543221    111


Q ss_pred             CchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742          578 IPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       578 ~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~  628 (629)
                      +...+        .+.+.++.+.+...+....   ....+..++..+.++..++.+|..
T Consensus       235 t~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~---al~~l~~l~~~G~d~~~~~~~l~~  290 (484)
T PRK14956        235 TGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSK---SLEILESLYQEGQDIYKFLWDSIE  290 (484)
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence            22222        2334555665555443221   224466788888899888877753

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=8.3e-33  Score=313.02  Aligned_cols=273  Identities=15%  Similarity=0.178  Sum_probs=206.3

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~  419 (629)
                      .+.|++||||++|+||+||+++++.|+.++..++++|. ||+||+||||||+|++||+.++|..... ..|..|   ..+
T Consensus         3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I   82 (830)
T PRK07003          3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI   82 (830)
T ss_pred             cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence            45689999999999999999999999999999999886 8999999999999999999998753211 122223   332


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .-.....++++++...+++     +.++++++...... ...++||||||+|.|+...+++|+++||+++.++.|||+||
T Consensus        83 ~~G~h~DviEIDAas~rgV-----DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt  157 (830)
T PRK07003         83 DEGRFVDYVEMDAASNRGV-----DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT  157 (830)
T ss_pred             hcCCCceEEEecccccccH-----HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            2223446888988766654     33444444433222 34568999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCCCC-
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PFADDQ-  576 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~-~~~~~~-  576 (629)
                      +..+|+++|+|||+.|.|.+++.+++.++|.+++.++++.++++.+..|++.++||+|++|++|+.+...+. .+.... 
T Consensus       158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V  237 (830)
T PRK07003        158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV  237 (830)
T ss_pred             ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999866443322 111100 


Q ss_pred             -C-Cc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          577 -P-IP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       577 -~-~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                       . +. .+ .+.+.++...++.++.    ..++..+.+++..+.+...++.+|.
T Consensus       238 ~~~LG~~d-~~~i~~ll~aL~~~d~----~~~l~~~~~l~~~g~~~~~~l~dLl  286 (830)
T PRK07003        238 SGMLGALD-QTYMVRLLDALAAGDG----PEILAVADEMALRSLSFSTALQDLA  286 (830)
T ss_pred             HHHhCCCC-HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence             0 00 11 2335556655555432    2233445566666666666666553

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.6e-32  Score=303.67  Aligned_cols=270  Identities=15%  Similarity=0.183  Sum_probs=215.3

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCC---ccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWP---TQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~---~~v~~  419 (629)
                      .+.|++||||++|+||+||+++++.|+.++..++.+| +||+||+|||||++|+++|+.++|..... ..|.   .|..+
T Consensus         3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i   82 (509)
T PRK14958          3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI   82 (509)
T ss_pred             chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence            4679999999999999999999999999999999998 58999999999999999999998764221 1222   33333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....++     +.++++.......+ .+..+|+||||+|.|+..++++|++++|+++..+.|||+|+
T Consensus        83 ~~g~~~d~~eidaas~~~v-----~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt  157 (509)
T PRK14958         83 DEGRFPDLFEVDAASRTKV-----EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT  157 (509)
T ss_pred             hcCCCceEEEEcccccCCH-----HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            3445566899998655554     34566665544433 34678999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ++.++..+|++||..++|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+    .+..+
T Consensus       158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~----~~~It  233 (509)
T PRK14958        158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYG----NGKVL  233 (509)
T ss_pred             ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC----CCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999997665432    22223


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        +..+.+++..+..++...    ....+.+++..+.++..|+.+|.
T Consensus       234 ~~~V~~~lg~~~~~~i~~ll~al~~~d~~~----~l~~~~~l~~~g~~~~~il~~l~  286 (509)
T PRK14958        234 IADVKTMLGTIEPLLLFDILEALAAKAGDR----LLGCVTRLVEQGVDFSNALADLL  286 (509)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence            3333        344455565555543322    33456778888888888877764

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.4e-32  Score=311.29  Aligned_cols=270  Identities=16%  Similarity=0.188  Sum_probs=204.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~  419 (629)
                      .+.|++||||.+|+||+||+++++.|+.++..++++|. ||+||+|||||++|++||+.++|.....    ..|..|..+
T Consensus         3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i   82 (944)
T PRK14949          3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI   82 (944)
T ss_pred             chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence            46799999999999999999999999999999999996 8999999999999999999998763211    112223333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .-.....++++++....++     +.++++...+.... .+..+||||||+|.|+.+++++|+++||+++..++||++|+
T Consensus        83 ~~g~~~DviEidAas~~kV-----DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT  157 (944)
T PRK14949         83 AQGRFVDLIEVDAASRTKV-----DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT  157 (944)
T ss_pred             hcCCCceEEEeccccccCH-----HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence            3333445678877544443     33455554443332 34668999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      +...|+++|+|||.++.|.+++.+++..+|..++..+++.++++++..|+..++|++|.++++|+.+...+.    +...
T Consensus       158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~----~~It  233 (944)
T PRK14949        158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGG----GQVM  233 (944)
T ss_pred             CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999976543221    1111


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ...+        ...+..+.+.+...+ +.   .....+..++..+.++..|+..|.
T Consensus       234 ~~~V~~llG~iD~~~V~~llksI~~~D-~~---aaL~~l~~Ll~~G~D~~~ILr~Ll  286 (944)
T PRK14949        234 LTQVQTMLGSIDEQHVIALLKALTDAD-IG---VLMQTCAQVLAFGADAQEVLRSLL  286 (944)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHcCC-HH---HHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1111        122444444443332 22   222334556677777777776653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5e-32  Score=303.58  Aligned_cols=218  Identities=17%  Similarity=0.199  Sum_probs=185.0

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC------C---CCCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW------N---EKWP  414 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~------~---~~~~  414 (629)
                      .+.|++||||++|+||+||+++++.|++++..++++|. ||+||+|||||++|++||+.++|....      .   ..|.
T Consensus         3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~   82 (700)
T PRK12323          3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR   82 (700)
T ss_pred             chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence            46799999999999999999999999999999999985 899999999999999999999874210      0   1122


Q ss_pred             ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742          415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~  493 (629)
                      .|..+.......++++++....++     +.++++++...... .+..+||||||+|.|+...+|+|+++||+++.++.|
T Consensus        83 sC~~I~aG~hpDviEIdAas~~gV-----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F  157 (700)
T PRK12323         83 ACTEIDAGRFVDYIEMDAASNRGV-----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF  157 (700)
T ss_pred             HHHHHHcCCCCcceEecccccCCH-----HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence            333333334557889988655554     44566655544433 356789999999999999999999999999999999


Q ss_pred             EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      ||+||++.+|+++|+|||+.+.|.+++.+++.++|.+++.++++.++++.+..|++.++|++|.++++|+.+..
T Consensus       158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia  231 (700)
T PRK12323        158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA  231 (700)
T ss_pred             EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999976443

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.98  E-value=6e-31  Score=296.76  Aligned_cols=269  Identities=13%  Similarity=0.142  Sum_probs=205.0

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc--
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA--  422 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~--  422 (629)
                      .|++||||++|+||+||+++++.|+.++..|+++| +||+||+|||||++|+++|+.++|..... ..|..|-.|...  
T Consensus         2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~   81 (584)
T PRK14952          2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP   81 (584)
T ss_pred             cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence            36799999999999999999999999999999999 58999999999999999999998753211 123333333322  


Q ss_pred             ---CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          423 ---SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       423 ---sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                         .+..++++++....++     +.++++.......+ ...++|+||||+|.|+.+++++|+++||+++..+.|||+|+
T Consensus        82 ~~~~~~dvieidaas~~gv-----d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt  156 (584)
T PRK14952         82 NGPGSIDVVELDAASHGGV-----DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT  156 (584)
T ss_pred             ccCCCceEEEeccccccCH-----HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence               3456888988655554     34455544433332 34567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      .+.+|+++|+|||+.+.|.+++.+++.++|..+|.++|+.++++++..|++.++||+|.++++|+.+.....   .+..+
T Consensus       157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~---~~~It  233 (584)
T PRK14952        157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA---DTHVT  233 (584)
T ss_pred             ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC---CCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999998765321   11112


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        +..+.+++..+..++. ..+   ...+.+++..+.++..|+..|.
T Consensus       234 ~~~v~~llg~~~~~~i~~lv~al~~~d~-~~a---l~~l~~l~~~g~d~~~~l~~L~  286 (584)
T PRK14952        234 YQRALGLLGATDVALIDDAVDALAADDA-AAL---FGAIESVIDAGHDPRRFATDLL  286 (584)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHcCCH-HHH---HHHHHHHHHcCCCHHHHHHHHH
Confidence            2222        2234445444433332 222   2334555666667766666554

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.98  E-value=8e-31  Score=289.96  Aligned_cols=266  Identities=19%  Similarity=0.239  Sum_probs=213.6

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccccc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVPVA  422 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~i~  422 (629)
                      |+.||||++|+||+||+.+++.|++++..|+.+ ++||+||+|+||||+|+++|+.++|.....    ..|..|..+.-.
T Consensus         3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~   82 (491)
T PRK14964          3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS   82 (491)
T ss_pred             hhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence            789999999999999999999999999999998 599999999999999999999987753211    233345555556


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+..++++++....++     +.++++.......+ ....+|+||||+|.|+..++++|++++|+++..+.|||+|+...
T Consensus        83 ~~~Dv~eidaas~~~v-----ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~  157 (491)
T PRK14964         83 NHPDVIEIDAASNTSV-----DDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK  157 (491)
T ss_pred             CCCCEEEEecccCCCH-----HHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence            7788999999766665     34555555443333 24568999999999999999999999999999999999999999


Q ss_pred             cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742          502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG  581 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~  581 (629)
                      ++..+|++||+.+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+...+.    +..+..+
T Consensus       158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~----~~It~e~  233 (491)
T PRK14964        158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSN----NKISEKS  233 (491)
T ss_pred             HHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988765432    1222233


Q ss_pred             HH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          582 WE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       582 ~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      +.        ..+.++...++.++....+    ..+.+++.. ..+..|+.+|.
T Consensus       234 V~~llg~~~~~~If~L~~aI~~~d~~~Al----~~l~~Ll~~-g~~~~i~~~l~  282 (491)
T PRK14964        234 VRDLLGCVDKHILEDLVEAILLGDAQSAL----NVFRELCNT-SNPVIILEGML  282 (491)
T ss_pred             HHHHHccCCHHHHHHHHHHHHCCCHHHHH----HHHHHHHhc-CCHHHHHHHHH
Confidence            33        3456777766666543333    345556554 46667777665

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.98  E-value=1.1e-30  Score=296.39  Aligned_cols=218  Identities=17%  Similarity=0.205  Sum_probs=183.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcc---ccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQ---VLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~---v~~  419 (629)
                      .+.|++||||.+|+||+||+.+++.|++.+..|+++|. ||+||+||||||+|+++|+.++|.... ...|..|   ..+
T Consensus         3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i   82 (647)
T PRK07994          3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI   82 (647)
T ss_pred             chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence            46789999999999999999999999999999999985 899999999999999999999885321 1122233   333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .-.....++++++....++     +.++++...+.... .+..+|+||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus        83 ~~g~~~D~ieidaas~~~V-----ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt  157 (647)
T PRK07994         83 EQGRFVDLIEIDAASRTKV-----EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT  157 (647)
T ss_pred             HcCCCCCceeecccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence            3334456788887543343     34555555544432 35678999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      ++..|+++|+|||..+.|.+++.+++..+|..++.++++.++++.+..|+..++|++|+|+++|+.+..
T Consensus       158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia  226 (647)
T PRK07994        158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIA  226 (647)
T ss_pred             CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999976544

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.98  E-value=1e-30  Score=293.70  Aligned_cols=269  Identities=17%  Similarity=0.208  Sum_probs=206.3

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~  419 (629)
                      .+.|++||||++|+||+|++.+++.|..++..++.+|. ||+||+|||||++|+++|+.++|..... ..|..|   ..+
T Consensus         2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I   81 (702)
T PRK14960          2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV   81 (702)
T ss_pred             chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence            35689999999999999999999999999999998865 8999999999999999999998753211 122233   333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....++     +.+++++....... .++++|+||||+|.|+..++++|++++|+++..+.|||+|+
T Consensus        82 ~~g~hpDviEIDAAs~~~V-----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt  156 (702)
T PRK14960         82 NEGRFIDLIEIDAASRTKV-----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT  156 (702)
T ss_pred             hcCCCCceEEecccccCCH-----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence            3344557889988655554     34555554443332 24568999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ++..+..+|++||..+.|.+++.+++.++|..++.++++.++++++..|++.++||+|.|+++|+.+...+    .+...
T Consensus       157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg----~g~IT  232 (702)
T PRK14960        157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYG----QGAVH  232 (702)
T ss_pred             ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999997654432    12222


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                      ..++        ++.+.+++..+.++.....+    ..+.++...+.+...++..|
T Consensus       233 ~edV~~lLG~~d~e~IfdLldAI~k~d~~~al----~~L~el~~~g~d~~~~l~~L  284 (702)
T PRK14960        233 HQDVKEMLGLIDRTIIYDLILAVHQNQREKVS----QLLLQFRYQALDVSLVLDQL  284 (702)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCHHHHH----HHHHHHHHhCCCHHHHHHHH
Confidence            2232        23455666655555432222    33445555566666555544

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.98  E-value=6.6e-31  Score=297.53  Aligned_cols=270  Identities=16%  Similarity=0.160  Sum_probs=213.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC------CCCC---
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN------EKWP---  414 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~------~~~~---  414 (629)
                      .+.|++||||++|+||+||+++++.|++++..++.+|. ||+||+||||||+|+++|+.++|.....      ..|.   
T Consensus         3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~   82 (618)
T PRK14951          3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ   82 (618)
T ss_pred             hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence            45699999999999999999999999999999999986 8999999999999999999998743110      1222   


Q ss_pred             ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742          415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~  493 (629)
                      .|..+.......++++++....++     +.++++........ .+..+|+||||+|.|+...+++|++++|+++..+.|
T Consensus        83 ~C~~i~~g~h~D~~eldaas~~~V-----d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f  157 (618)
T PRK14951         83 ACRDIDSGRFVDYTELDAASNRGV-----DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF  157 (618)
T ss_pred             HHHHHHcCCCCceeecCcccccCH-----HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence            333333345566888888655554     44566655544433 345689999999999999999999999999999999


Q ss_pred             EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 036742          494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA  573 (629)
Q Consensus       494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~  573 (629)
                      ||+|+++..++.+|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+.   
T Consensus       158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~---  234 (618)
T PRK14951        158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGS---  234 (618)
T ss_pred             EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999976544322   


Q ss_pred             CCCCCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          574 DDQPIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       574 ~~~~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                       +..+..++        +..+.++...+..++...    +...+.+++..+.++..|+..|.
T Consensus       235 -~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~----al~~l~~l~~~G~~~~~il~~l~  291 (618)
T PRK14951        235 -GQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRT----VVETADELRLNGLSAASTLEEMA  291 (618)
T ss_pred             -CCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence             22222222        344556666555554332    33446677788888888888775

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=1.7e-30  Score=302.71  Aligned_cols=215  Identities=14%  Similarity=0.156  Sum_probs=182.2

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc---
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA---  422 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~---  422 (629)
                      |++||||.+|+|||||+.+++.|+.++..++++| +||+||+|||||++|++||+.|+|..... .-|..|-+|...   
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g   84 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG   84 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcC
Confidence            6699999999999999999999999999999998 68999999999999999999998853211 123344444332   


Q ss_pred             --CCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          423 --SSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       423 --sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                        .+..++++++....++     +.++++....... ....++||||||+|.|+.+.+++|+++||+++..+.|||+|+.
T Consensus        85 ~~~~~dv~eidaas~~~V-----d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~  159 (824)
T PRK07764         85 GPGSLDVTEIDAASHGGV-----DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE  159 (824)
T ss_pred             CCCCCcEEEecccccCCH-----HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence              3456788887554454     4445554433322 2356789999999999999999999999999999999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      .++|+++|+|||.+|.|.+++.+++..+|.++|.++++.++++.+..|++.++||+|.++++|+.+..
T Consensus       160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia  227 (824)
T PRK07764        160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA  227 (824)
T ss_pred             hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998664

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=1.9e-30  Score=293.68  Aligned_cols=270  Identities=17%  Similarity=0.215  Sum_probs=212.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~  419 (629)
                      .+.|++||||++|+||+||+++++.|+.++..++++| +||+||+|||||++|+++|+.++|..... ..|..|   ..+
T Consensus         3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i   82 (709)
T PRK08691          3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI   82 (709)
T ss_pred             chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence            4568999999999999999999999999999999887 69999999999999999999998764221 112223   222


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....++     +.+++++....... .+..+||||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus        83 ~~g~~~DvlEidaAs~~gV-----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt  157 (709)
T PRK08691         83 DAGRYVDLLEIDAASNTGI-----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT  157 (709)
T ss_pred             hccCccceEEEeccccCCH-----HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence            3333445788887655554     34555554433222 23567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ++..++.+|++||..|.|.+++.+++..+|..++.++|+.++++.+..|++.++||+|.++++|+.+...+.    +...
T Consensus       158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~----g~It  233 (709)
T PRK08691        158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS----GKVA  233 (709)
T ss_pred             CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC----CCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999987655332    1222


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        +..+.+++..++.++..    .+...+.+++..+++...++..|.
T Consensus       234 ~e~V~~lLG~~d~~~If~LldAL~~~d~~----~al~~l~~L~~~G~d~~~~l~~L~  286 (709)
T PRK08691        234 ENDVRQMIGAVDKQYLYELLTGIINQDGA----ALLAKAQEMAACAVGFDNALGELA  286 (709)
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            2222        33456666666655433    344556778888888888888775

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=4.1e-30  Score=284.64  Aligned_cols=270  Identities=15%  Similarity=0.184  Sum_probs=210.6

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~  420 (629)
                      +-|++||||++|+||+||+++++.|+.++..+..+| +||+|||||||||+|+++|+.+.|.....    ..+..|..+.
T Consensus         2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~   81 (472)
T PRK14962          2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID   81 (472)
T ss_pred             chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence            468899999999999999999999999999999987 79999999999999999999987643211    1222344444


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      ......++++++....++.     .++++.......+ ....+||||||+|.|+.+++++|++.++.++..+.+|++|+.
T Consensus        82 ~g~~~dv~el~aa~~~gid-----~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn  156 (472)
T PRK14962         82 EGTFMDVIELDAASNRGID-----EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN  156 (472)
T ss_pred             cCCCCccEEEeCcccCCHH-----HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence            4455568899987666653     3344443332222 234579999999999999999999999999999999999998


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP  579 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~  579 (629)
                      +..+.++|++||.++.|.+++.+++..+|..++..+++.+++++++.|++.++||+|.+++.|+.+.....    +..+.
T Consensus       157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~----~~It~  232 (472)
T PRK14962        157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE----GKITL  232 (472)
T ss_pred             hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC----CCCCH
Confidence            88999999999999999999999999999999999999999999999999999999999999998664321    11222


Q ss_pred             hhHH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742          580 LGWE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       580 ~~~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~  628 (629)
                      .++.        ..+.++.+.+..++.    ......+.+++..+.+|..|+.+|..
T Consensus       233 e~V~~~l~~~~~~~i~~li~si~~~d~----~~Al~~l~~ll~~Gedp~~i~r~l~~  285 (472)
T PRK14962        233 ETVHEALGLIPIEVVRDYINAIFNGDV----KRVFTVLDDVYYSGKDYEVLIQQAIE  285 (472)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3332        333455554444332    23445577888889999999988853

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=8.5e-30  Score=285.24  Aligned_cols=270  Identities=19%  Similarity=0.199  Sum_probs=204.0

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-C---CCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-E---KWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~---~~~~~v~~  419 (629)
                      .+.|++||||.+|+||+||+.+++.|..++..++.+| +||+||+|||||++|+++|+.++|..... .   .|..|..+
T Consensus         3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i   82 (546)
T PRK14957          3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI   82 (546)
T ss_pred             chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence            4679999999999999999999999999999999988 68999999999999999999998742211 1   12233333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .-.....++++++....++     +.++++...+...+ .+..+||||||+|.|+.+++++|++++|+++..+.|||+|+
T Consensus        83 ~~~~~~dlieidaas~~gv-----d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt  157 (546)
T PRK14957         83 NNNSFIDLIEIDAASRTGV-----EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT  157 (546)
T ss_pred             hcCCCCceEEeecccccCH-----HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence            3445567788877444443     33444444433322 34567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      +...+..+|++||..++|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+.....    +...
T Consensus       158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~----~~It  233 (546)
T PRK14957        158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG----GELK  233 (546)
T ss_pred             ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999997654321    1222


Q ss_pred             chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++++        .+.++...+..++. ..+.   ..+.+++..+.+...++..|.
T Consensus       234 ~~~V~~~l~~~~~~~v~~ll~Al~~~d~-~~~l---~~~~~l~~~~~~~~~~l~~l~  286 (546)
T PRK14957        234 QAQIKQMLGIIDSEEVYSIINAIIDNDP-KAIL---PAIKNLALTESSADAVLDRIA  286 (546)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHcCCH-HHHH---HHHHHHHHhCCCHHHHHHHHH
Confidence            233333        34555554444332 2222   223445555666666665554

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=7.5e-30  Score=284.64  Aligned_cols=272  Identities=14%  Similarity=0.190  Sum_probs=214.8

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC---CCCCcccccccc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN---EKWPTQVLVPVA  422 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~---~~~~~~v~~~i~  422 (629)
                      +| +||||.+|+||+||+++++.|+.++..+.++|. ||+|||||||||+|+++|+.+.|.....   ..|..|..+...
T Consensus         4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~   82 (504)
T PRK14963          4 LY-QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG   82 (504)
T ss_pred             HH-HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence            44 999999999999999999999999999999987 9999999999999999999997643111   122233344445


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+..++++++....++     +.++++.......+ ....+||||||+|.++..++++|++.++++...+.||++|+.+.
T Consensus        83 ~h~dv~el~~~~~~~v-----d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~  157 (504)
T PRK14963         83 AHPDVLEIDAASNNSV-----EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE  157 (504)
T ss_pred             CCCceEEecccccCCH-----HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence            6777899998655553     34455444333322 23567999999999999999999999999999999999999999


Q ss_pred             cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCC---CCC
Q 036742          502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD---QPI  578 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~---~~~  578 (629)
                      .+.++|++||..++|.+++.+++..+|..++.++|+.++++++..|++.++||+|++++.|+.+...+..+...   ...
T Consensus       158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l  237 (504)
T PRK14963        158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEAL  237 (504)
T ss_pred             hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999976542221110   011


Q ss_pred             chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742          579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~  628 (629)
                      ...+++.+.+++..+..++....+    ..+.+++..+.++..|+..|.+
T Consensus       238 ~~~~~~~if~Li~al~~~d~~~Al----~~l~~Ll~~G~~~~~Il~~L~~  283 (504)
T PRK14963        238 GLPPQERLRGIAAALAQGDAAEAL----SGAAQLYRDGFAARTLVEGLLE  283 (504)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence            123355577777777666554444    4456788889999998887753

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=1.2e-29  Score=273.26  Aligned_cols=270  Identities=20%  Similarity=0.202  Sum_probs=203.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccc--
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVP--  420 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~--  420 (629)
                      .+.|++||||++|+||+||+++++.|+.++..++.+|. ||+||+|+||||+|+++|+.+.|..... ..+..|..|.  
T Consensus         3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~   82 (363)
T PRK14961          3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI   82 (363)
T ss_pred             cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            46799999999999999999999999999999999985 8999999999999999999997653211 1222232222  


Q ss_pred             -ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          421 -VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       421 -i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                       ......++++++....+.     +.++++...+...+. ...+||||||+|.|+..++++|++.+|+++..+.||++|+
T Consensus        83 ~~~~~~d~~~~~~~~~~~v-----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~  157 (363)
T PRK14961         83 EKGLCLDLIEIDAASRTKV-----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT  157 (363)
T ss_pred             hcCCCCceEEecccccCCH-----HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence             223345666766432222     335555554443332 3457999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      +...+.++|++||..++|.+++.+++.++|..++.++++.++++++..|+..++||+|.|++.|+.+...+.    +...
T Consensus       158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~----~~It  233 (363)
T PRK14961        158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK----GNIN  233 (363)
T ss_pred             ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998654331    2222


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        +..+.+++..+..++...    ....+.+++..+.++..|+..|.
T Consensus       234 ~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~----~~~~~~~l~~~g~~~~~il~~l~  286 (363)
T PRK14961        234 IKNVTDMLGLLNEKQSFLLTDALLKKDSKK----TMLLLNKISSIGIEWENILIEML  286 (363)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence            2222        233445555554443322    22334566666777776665543

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=1e-29  Score=288.27  Aligned_cols=269  Identities=16%  Similarity=0.222  Sum_probs=210.7

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~  420 (629)
                      +-|++||||++|+||+||+++++.|+.++..|.++|. |||||+|+|||++|+++|+.++|.....    ..|..|..+.
T Consensus         4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~   83 (576)
T PRK14965          4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT   83 (576)
T ss_pred             HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence            4588999999999999999999999999999999885 8999999999999999999998753211    2233445555


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      ...+..++++++....++     +.++++.......+ ...++|+||||+|.|+.+++++|+++||+++..+.|||+|+.
T Consensus        84 ~g~~~d~~eid~~s~~~v-----~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~  158 (576)
T PRK14965         84 EGRSVDVFEIDGASNTGV-----DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE  158 (576)
T ss_pred             cCCCCCeeeeeccCccCH-----HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence            556777888887554454     33455554443333 245679999999999999999999999999999999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP  579 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~  579 (629)
                      +.+|.++|++||..+.|.+++.+++..+|..++.++|+.++++.+..|++.++||+|.++++|+.+.....    +..+.
T Consensus       159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g----~~It~  234 (576)
T PRK14965        159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCG----DAVGD  234 (576)
T ss_pred             hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999987654322    12222


Q ss_pred             hhHHHH--------HHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          580 LGWEEV--------LIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       580 ~~~ek~--------l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      .++..+        +.++...+..++...    ....+.+++..+.++..++..|.
T Consensus       235 edV~~llG~~~~~~l~~ll~al~~~d~~~----al~~l~~l~~~G~~~~~~l~~Ll  286 (576)
T PRK14965        235 DDVAELLGVVDRRLLLDISAAVFGRDTRA----LLEIVERVDEFGYNMRQFCQELI  286 (576)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence            333333        455555555544222    22345566677777776666554

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=1.9e-29  Score=280.82  Aligned_cols=275  Identities=16%  Similarity=0.210  Sum_probs=216.8

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCC--------CCCC
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACW--------NEKW  413 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~--------~~~~  413 (629)
                      ...++|++||||.+|+|++||+.+++.|+.++..++.+ ++||+||+||||||+|+++|+.++|....        ...|
T Consensus         6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C   85 (507)
T PRK06645          6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC   85 (507)
T ss_pred             ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence            34678999999999999999999999999999998876 68899999999999999999999875311        0122


Q ss_pred             CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcE
Q 036742          414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK  492 (629)
Q Consensus       414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~  492 (629)
                      ..|..+.-..+..++++++....++     +.+++++......+ ...++||||||+|.|+..++++|++++|+++..+.
T Consensus        86 ~~C~~i~~~~h~Dv~eidaas~~~v-----d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v  160 (507)
T PRK06645         86 TNCISFNNHNHPDIIEIDAASKTSV-----DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII  160 (507)
T ss_pred             hHHHHHhcCCCCcEEEeeccCCCCH-----HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence            3444444455678899988655554     34455554433332 23567999999999999999999999999999999


Q ss_pred             EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742          493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF  572 (629)
Q Consensus       493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~  572 (629)
                      ||++|+...++.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+...... 
T Consensus       161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~-  239 (507)
T PRK06645        161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK-  239 (507)
T ss_pred             EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987543221 


Q ss_pred             CCCCCCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          573 ADDQPIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       573 ~~~~~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..+..+..++        +..+.++...++.++...    ....+.+++..+.++..|+..|+
T Consensus       240 ~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~----Al~~l~~L~~~g~~~~~~l~~l~  298 (507)
T PRK06645        240 SDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEK----AINLINKLYGSSVNLEIFIESVS  298 (507)
T ss_pred             CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence            0111222222        445566666666655433    34557788888999988877665

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=2.2e-29  Score=282.57  Aligned_cols=270  Identities=16%  Similarity=0.177  Sum_probs=208.6

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~  419 (629)
                      .+.|++||||.+|++|+||+.+++.|..++..+..+| +||+||+|+|||++|+++|+.+.|.....    ..|..|..+
T Consensus         3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i   82 (605)
T PRK05896          3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI   82 (605)
T ss_pred             chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence            3579999999999999999999999999999998886 78999999999999999999998754211    122233333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ....+..++++++....++     +.++++...+...+. +..+|+||||+|.|+.+++++|++++|+++..+.+|++|+
T Consensus        83 ~~~~h~DiieIdaas~igV-----d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt  157 (605)
T PRK05896         83 NTNQSVDIVELDAASNNGV-----DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT  157 (605)
T ss_pred             HcCCCCceEEeccccccCH-----HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence            4445677888887544443     344555544443322 3467999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      .+..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|+..++||+|.|+++|+.+.....    ....
T Consensus       158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~----~~It  233 (605)
T PRK05896        158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN----SEID  233 (605)
T ss_pred             ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcC----CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998665432    1112


Q ss_pred             chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++.+        .+.++...+..++.    ...+..+.+++..+..+..++..|.
T Consensus       234 ~e~V~ellg~~~~~~Vf~Ll~AI~~kd~----~~al~~l~~Ll~~ge~~~~il~~L~  286 (605)
T PRK05896        234 IEDINKTFGLVDNNKKINLIELIQKNDI----EELRNLINELESKGINFEAFCRDLI  286 (605)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHCCCH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            222222        23444444433332    2233445677777888877777664

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=2.5e-29  Score=280.40  Aligned_cols=218  Identities=15%  Similarity=0.169  Sum_probs=182.5

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---cccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~~  420 (629)
                      +.|++||||.+|+||+||+.+++.|+.++..|..+|+ |||||+|+|||++|+++|+.+.|..... ..+..|   ..+.
T Consensus         2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~   81 (535)
T PRK08451          2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL   81 (535)
T ss_pred             ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence            5699999999999999999999999999999999986 7999999999999999999997653211 112222   2222


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      -..+..++++++...+++     +.++++.......+ .+..+|+||||+|.|+.+++++|++++|+++..+.|||+|++
T Consensus        82 ~~~h~dv~eldaas~~gI-----d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd  156 (535)
T PRK08451         82 ENRHIDIIEMDAASNRGI-----DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD  156 (535)
T ss_pred             hcCCCeEEEeccccccCH-----HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence            234455778877655554     44555554433332 245679999999999999999999999999999999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      +..|.++|++||..++|.+++.+++..+|..++.++|+.++++++..|+..++||+|.++++|+.+...
T Consensus       157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~  225 (535)
T PRK08451        157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIY  225 (535)
T ss_pred             hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999876654

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=4.9e-29  Score=281.68  Aligned_cols=270  Identities=18%  Similarity=0.227  Sum_probs=210.5

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~  419 (629)
                      .+-|++||||++|+||+||+++++.|++++..+..+| +||+||+|||||++|+++|+.++|.....    ..|..|..+
T Consensus         3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i   82 (559)
T PRK05563          3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI   82 (559)
T ss_pred             cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence            3558899999999999999999999999999999888 67899999999999999999998764211    223344555


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ....+..++++++....++     +.++++.......+ ...++|+||||+|.|+.+++++|++++|+++..+.||++|+
T Consensus        83 ~~g~~~dv~eidaas~~~v-----d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt  157 (559)
T PRK05563         83 TNGSLMDVIEIDAASNNGV-----DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT  157 (559)
T ss_pred             hcCCCCCeEEeeccccCCH-----HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence            5556778899988655554     44555555444333 34567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      .++.+.++|+|||..+.|.+++.+++..+|..++.++|+.++++++..|+..++||+|.|++.|+.+...+    .+..+
T Consensus       158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~----~~~It  233 (559)
T PRK05563        158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG----DGKVT  233 (559)
T ss_pred             ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998775532    12222


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        ...+.+++..+..++....    ...+.+++..+.++..++..|.
T Consensus       234 ~~~V~~vlg~~~~~~i~~l~~al~~~d~~~a----l~~l~~l~~~g~d~~~~l~~L~  286 (559)
T PRK05563        234 YEDALEVTGSVSQEALDDLVDAIVEGDVAKA----LKILEELLDEGKDPNRFIEDLI  286 (559)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHccCHHHH----HHHHHHHHHcCCCHHHHHHHHH
Confidence            2222        2344555555555443222    2334555666666666665553

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.97  E-value=6.7e-30  Score=282.18  Aligned_cols=269  Identities=20%  Similarity=0.239  Sum_probs=216.6

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCC-CCCCCC---cccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDAC-WNEKWP---TQVLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~-~~~~~~---~~v~~~  420 (629)
                      +..+.||||++|+|++||+.++..|++.+..++..| .||+||-||||||+||.+|+.|+|... ....|.   .|.++.
T Consensus         4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~   83 (515)
T COG2812           4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN   83 (515)
T ss_pred             HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence            456799999999999999999999999999999876 679999999999999999999998852 112233   333444


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      -.....++|+++....++     +.+|++.+.....+ .+++||+||||+|.|+..++|+|++++|+++.++.|||+|.+
T Consensus        84 ~g~~~DviEiDaASn~gV-----ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe  158 (515)
T COG2812          84 EGSLIDVIEIDAASNTGV-----DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE  158 (515)
T ss_pred             cCCcccchhhhhhhccCh-----HHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence            445677889998766675     56777777666554 456789999999999999999999999999999999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP  579 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~  579 (629)
                      +.+++.+|+|||+.+.|..++.++|...|..++.++++.++++++..|++.++|.+|.++.+|+.+...+.    +....
T Consensus       159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~----~~It~  234 (515)
T COG2812         159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE----GEITL  234 (515)
T ss_pred             cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC----CcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999998766443    12222


Q ss_pred             hhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          580 LGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       580 ~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..+        ...+..+...++.++..    .....+.+++..+..+.-++.+|.
T Consensus       235 ~~v~~~lG~~~~~~~~~~~~~i~~~d~~----~~~~~~~~l~~~G~~~~~~l~dl~  286 (515)
T COG2812         235 ESVRDMLGLTDIEKLLSLLEAILKGDAK----EALRLINELIEEGKDPEAFLEDLL  286 (515)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHccCHH----HHHHHHHHHHHhCcCHHHHHHHHH
Confidence            221        22333444444444332    233456677778888887777765

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=4.7e-29  Score=280.07  Aligned_cols=270  Identities=17%  Similarity=0.182  Sum_probs=206.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~  419 (629)
                      .+.|++||||.+|+||+||+++++.|..++..++.+|. ||+||+|||||++|+++|+.++|..... ..|..|   ..+
T Consensus         3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i   82 (527)
T PRK14969          3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI   82 (527)
T ss_pred             cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            45689999999999999999999999999999999985 8999999999999999999998753211 122233   332


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....++     +.++++.......+ .+..+|+||||+|.|+.+++++|++++|+++..+.|||+|+
T Consensus        83 ~~~~~~d~~ei~~~~~~~v-----d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~  157 (527)
T PRK14969         83 DSGRFVDLIEVDAASNTQV-----DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT  157 (527)
T ss_pred             hcCCCCceeEeeccccCCH-----HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence            3333456778877544443     44555555444333 34567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ++..+..+|+|||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+.    +...
T Consensus       158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~----~~I~  233 (527)
T PRK14969        158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG----GTVN  233 (527)
T ss_pred             ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999987655432    2222


Q ss_pred             chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++.+        .+.++...+..++ ..   .+...+.+++..+.+...++..|.
T Consensus       234 ~~~v~~~~~~~~~~~i~~ll~al~~~~-~~---~~l~~~~~l~~~~~~~~~~l~~l~  286 (527)
T PRK14969        234 ESEVRAMLGAIDQDYLFALLEALLAQD-GA---ALLAIADAMEERSLSFDAALQDLA  286 (527)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHcCC-HH---HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            223322        3445555444433 22   233334566666777777776654

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=8.9e-29  Score=280.40  Aligned_cols=271  Identities=14%  Similarity=0.169  Sum_probs=210.8

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC------CCCCcc
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN------EKWPTQ  416 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~------~~~~~~  416 (629)
                      ..+.|++||||.+|+||+||+.+++.|..++..|+.+| +||+||+|+|||++|+++|+.++|.....      +.|..|
T Consensus        10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c   89 (598)
T PRK09111         10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG   89 (598)
T ss_pred             cchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence            35779999999999999999999999999999999886 89999999999999999999998753211      123333


Q ss_pred             ccc---cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcE
Q 036742          417 VLV---PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK  492 (629)
Q Consensus       417 v~~---~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~  492 (629)
                      ..|   .-..+..++++++....++     +.++++.......+ ....+||||||+|.|+..++++|+++||+++..+.
T Consensus        90 ~~C~~i~~g~h~Dv~e~~a~s~~gv-----d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~  164 (598)
T PRK09111         90 EHCQAIMEGRHVDVLEMDAASHTGV-----DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVK  164 (598)
T ss_pred             HHHHHHhcCCCCceEEecccccCCH-----HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeE
Confidence            333   3334566888887655554     44556555443333 23567999999999999999999999999999999


Q ss_pred             EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742          493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF  572 (629)
Q Consensus       493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~  572 (629)
                      |||+|+...++..+|++||+.+.|.+++.+++..+|.+++.++++.++++++..|++.++||+|.+++.|+.+...+.  
T Consensus       165 fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~--  242 (598)
T PRK09111        165 FIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGA--  242 (598)
T ss_pred             EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654431  


Q ss_pred             CCCCCCchhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          573 ADDQPIPLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       573 ~~~~~~~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                        +..+..++..        .+.++...++.++..    .....+..++..+.++..|+..|+
T Consensus       243 --g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~----~Al~~l~~l~~~G~~p~~il~~L~  299 (598)
T PRK09111        243 --GEVTAEAVRDMLGLADRARVIDLFEALMRGDVA----AALAEFRAQYDAGADPVVVLTDLA  299 (598)
T ss_pred             --CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence              2333333332        334455544444322    223345566777778877776665

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.97  E-value=1.7e-28  Score=257.07  Aligned_cols=257  Identities=24%  Similarity=0.393  Sum_probs=201.6

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|++||||.+|+|++|++++++.|+.++..+..+++||+||||||||++|+++++++.+...               .
T Consensus         4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~---------------~   68 (319)
T PRK00440          4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW---------------R   68 (319)
T ss_pred             cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc---------------c
Confidence            4679999999999999999999999999999998899999999999999999999999866532               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      ..++++++++..+.. .+.+.+.+....... .....+||||||+|.+....++.|+++++.+...+.+|++||....+.
T Consensus        69 ~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~  146 (319)
T PRK00440         69 ENFLELNASDERGID-VIRNKIKEFARTAPV-GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKII  146 (319)
T ss_pred             cceEEeccccccchH-HHHHHHHHHHhcCCC-CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccc
Confidence            135677665444322 222333333322211 112357999999999999999999999999889999999999999999


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW--  582 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~--  582 (629)
                      +++++||.++.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+...+..     .+..++  
T Consensus       147 ~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~-----it~~~v~~  221 (319)
T PRK00440        147 DPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE-----VTEEAVYK  221 (319)
T ss_pred             hhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----CCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999987764321     122222  


Q ss_pred             ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742          583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH  627 (629)
Q Consensus       583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La  627 (629)
                            +..+.++...+..+.    ....+..+++++. .+.++..|++.|.
T Consensus       222 ~~~~~~~~~i~~l~~~~~~~~----~~~a~~~l~~ll~~~g~~~~~i~~~l~  269 (319)
T PRK00440        222 ITGTARPEEIREMIELALNGD----FTEAREKLRDLMIDYGLSGEDIIKQIH  269 (319)
T ss_pred             HhCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                  233455555554432    4445666777774 6788888887764

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.97  E-value=1.6e-28  Score=280.25  Aligned_cols=268  Identities=18%  Similarity=0.220  Sum_probs=202.3

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCCccccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN--EKWPTQVLVPV  421 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~~~v~~~i  421 (629)
                      ...|++||||.+|+||+||+.+++.|+.++..++++|. ||+||+|||||++|+++|+.+.|.....  ..|..|..| .
T Consensus         5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~-~   83 (725)
T PRK07133          5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN-V   83 (725)
T ss_pred             hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh-h
Confidence            46799999999999999999999999999999998875 7999999999999999999998753210  112233322 2


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      ..+..++++++....++     +.++++.......+ .+..+|+||||+|.|+.+++++|+++||+++..+.|||+|+.+
T Consensus        84 ~~~~Dvieidaasn~~v-----d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~  158 (725)
T PRK07133         84 NNSLDIIEMDAASNNGV-----DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV  158 (725)
T ss_pred             cCCCcEEEEeccccCCH-----HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence            23445677766433333     34555555444433 3456799999999999999999999999999999999999999


Q ss_pred             ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCch
Q 036742          501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL  580 (629)
Q Consensus       501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~  580 (629)
                      ..|.++|++||+.+.|.+++.+++..+|..++.++|+.++++++..|+..++|++|.|+++|+.+...+    .+..+..
T Consensus       159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~----~~~It~e  234 (725)
T PRK07133        159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG----NNKITLK  234 (725)
T ss_pred             hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999866432    1222222


Q ss_pred             hHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          581 GWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       581 ~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                      ++.+        .+.++...+..++.    ..++..+.+++..+..+..++..|
T Consensus       235 ~V~ellg~~~~e~If~Ll~aI~~kd~----~~aL~~l~~L~~~ged~~~iL~~L  284 (725)
T PRK07133        235 NVEELFGLVSNENLINLLNLLYSKDI----KEVLNILNQIKEQGIDPELLLISL  284 (725)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            2222        23344444433332    222233455566666666665544

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.97  E-value=2.8e-29  Score=282.88  Aligned_cols=217  Identities=12%  Similarity=0.168  Sum_probs=179.8

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCC---ccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACW-NEKWP---TQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~---~~v~~  419 (629)
                      .+.|++||||++|+||+||+.+++.|+.++..++++ ++||+||+|||||++|++||+.++|.... ...|.   .|..+
T Consensus         3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i   82 (624)
T PRK14959          3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV   82 (624)
T ss_pred             cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence            467999999999999999999999999999998864 67799999999999999999999875311 11222   33333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ....+..++++++....++     +.++.+...+.... ....+||||||+|.|+..++++|++++|++...+.||++|+
T Consensus        83 ~~g~hpDv~eId~a~~~~I-----d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt  157 (624)
T PRK14959         83 TQGMHVDVVEIDGASNRGI-----DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT  157 (624)
T ss_pred             hcCCCCceEEEecccccCH-----HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence            3345566888887544444     23344333333222 23457999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      .+..+..+|++||.+|.|.+++.+++..+|..++.++++.++++++..|++.++||+|+++++|+.+.
T Consensus       158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998654

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=3.9e-28  Score=269.93  Aligned_cols=270  Identities=16%  Similarity=0.180  Sum_probs=208.3

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCC---Cccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKW---PTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~---~~~v~~  419 (629)
                      .++|+++|||.+|++++||+.+++.|++++..+..+|. |||||+|+|||++|+++|+.++|..... ..|   .+|..+
T Consensus         3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i   82 (486)
T PRK14953          3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI   82 (486)
T ss_pred             chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence            46899999999999999999999999999999999885 6899999999999999999997642111 112   233444


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....++     +.++.+.......+ .+..+|+||||+|.|+.+++++|++++++++..+.||++|+
T Consensus        83 ~~g~~~d~~eidaas~~gv-----d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt  157 (486)
T PRK14953         83 DKGSFPDLIEIDAASNRGI-----DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT  157 (486)
T ss_pred             hcCCCCcEEEEeCccCCCH-----HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            4445567888887555554     23344444333332 24567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ....+.++|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+    .+..+
T Consensus       158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~----~~~It  233 (486)
T PRK14953        158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG----EGKVT  233 (486)
T ss_pred             CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCcC
Confidence            98899999999999999999999999999999999999999999999999999999999999999876532    22233


Q ss_pred             chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++++        .+.++...+..++...    ....+.+++..+.++..++..|.
T Consensus       234 ~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~----al~~l~~L~~~g~~~~~iL~~L~  286 (486)
T PRK14953        234 IKVVEEFLGIVSQESVRKFLNLLLESDVDE----AIKFLRTLEEKGYNLNKFWKQLE  286 (486)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHCCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence            334433        3455555555544322    22334556677777777766554

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=3.9e-28  Score=276.54  Aligned_cols=273  Identities=16%  Similarity=0.181  Sum_probs=212.0

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-----CCCCccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-----EKWPTQVLV  419 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-----~~~~~~v~~  419 (629)
                      ..|++||||.+|+||+||+++++.|..++..|..+| +|||||+|+|||++|+++|+.+.|.....     ..|..|..+
T Consensus         5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~   84 (614)
T PRK14971          5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF   84 (614)
T ss_pred             HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence            469999999999999999999999999999999998 78999999999999999999998653211     122334444


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ....+..+.++++....+.     +.++++...+...+ .+..+|+||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus        85 ~~~~~~n~~~ld~~~~~~v-----d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt  159 (614)
T PRK14971         85 NEQRSYNIHELDAASNNSV-----DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT  159 (614)
T ss_pred             hcCCCCceEEecccccCCH-----HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence            4445667788877544433     34455554443333 23567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCCC--
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PFADD--  575 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~-~~~~~--  575 (629)
                      ....|.++|++||.+++|.+++.+++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+..... .+...  
T Consensus       160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V  239 (614)
T PRK14971        160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSV  239 (614)
T ss_pred             CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987654321 11100  


Q ss_pred             -CCCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          576 -QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       576 -~~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                       ..........+.+++..+..+.....+    ..+++++..+.++..|+.-|+
T Consensus       240 ~~~l~~~~~~~iF~L~dai~~~~~~~al----~ll~~Ll~~g~~~~~iL~~L~  288 (614)
T PRK14971        240 IENLNILDYDYYFRLTDALLAGKVSDSL----LLFDEILNKGFDGSHFITGLA  288 (614)
T ss_pred             HHHhCCCCHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence             000001123346677767666544443    356788888888888877665

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.96  E-value=4.7e-28  Score=255.91  Aligned_cols=263  Identities=25%  Similarity=0.371  Sum_probs=200.0

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .+|++||+|.+|++|+|++.+++.|..++..+..||+||+||||||||++|+++++++.+... .              .
T Consensus         3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~--------------~   67 (337)
T PRK12402          3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-E--------------N   67 (337)
T ss_pred             CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-c--------------c
Confidence            489999999999999999999999999999998899999999999999999999999865431 0              1


Q ss_pred             ceEEEecccch--hh-------------------HHHHHHHHHHHHHHhccCcC--CCCeEEEEEccchhhHHHHHHHHH
Q 036742          426 HHVELNVNLQA--NA-------------------KYALMGLVKEIRDNLAITPE--VSNAMIVIYEVDKAAEHIQYLIKW  482 (629)
Q Consensus       426 ~vleInas~~~--~~-------------------k~~l~~~lrei~~~~~~~~~--~~~kVIIIDEID~Ls~~~q~aLlr  482 (629)
                      .++++++.+..  ..                   .....+.++++.+.+.....  ...+||||||+|.+....++.|++
T Consensus        68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~  147 (337)
T PRK12402         68 NFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRR  147 (337)
T ss_pred             ceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHH
Confidence            13444443210  00                   00012344444433332221  235699999999999999999999


Q ss_pred             HHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          483 IMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       483 ilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      +++.+...+.||++|+.+..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|+..++||+|.+++.|
T Consensus       148 ~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l  227 (337)
T PRK12402        148 IMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL  227 (337)
T ss_pred             HHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            99988888999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCC---CCch-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HcCCCHHHHHHHHh
Q 036742          563 EACKALNYPFADDQ---PIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLL-AEFVHPKLILLVMH  627 (629)
Q Consensus       563 q~~~~~~~~~~~~~---~~~~-~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL-~~~i~~~~i~~~La  627 (629)
                      +.+...+..+....   .... .++..+.++...+..++    ...++..+++++ ..+.++..|++.|.
T Consensus       228 ~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~----~~~a~~~l~~l~~~~g~~~~~i~~~l~  293 (337)
T PRK12402        228 QTAALAAGEITMEAAYEALGDVGTDEVIESLLDAAEAGD----FTDARKTLDDLLIDEGLSGGEVLEELL  293 (337)
T ss_pred             HHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            98664332221100   0011 22445566666555543    345556677776 68889999988874

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=6.4e-28  Score=273.90  Aligned_cols=273  Identities=15%  Similarity=0.167  Sum_probs=202.6

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWPT  415 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~~  415 (629)
                      +..++||||.+|++|+||+.+++.|+.++..|+++| +||+||+||||||+|+++|+.++|.....         ..|..
T Consensus         4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~   83 (620)
T PRK14954          4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE   83 (620)
T ss_pred             HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence            346799999999999999999999999999999988 88999999999999999999998853111         12223


Q ss_pred             c---ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742          416 Q---VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       416 ~---v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~  491 (629)
                      |   ..+....+..+.++++....++     +.++++...+...+ .+..+||||||+|.|+..++++|++++|+++..+
T Consensus        84 C~sC~~~~~g~~~n~~~~d~~s~~~v-----d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t  158 (620)
T PRK14954         84 CESCRDFDAGTSLNISEFDAASNNSV-----DDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA  158 (620)
T ss_pred             CHHHHHHhccCCCCeEEecccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence            3   3333334555666765433333     44555555544333 2346799999999999999999999999999999


Q ss_pred             EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 036742          492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP  571 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~  571 (629)
                      .|||+|+....|.++|++||.+++|.+++.+++..+|..++.++|+.+++++++.|++.++||+|.+++.|+.+......
T Consensus       159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~  238 (620)
T PRK14954        159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG  238 (620)
T ss_pred             EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence            99999998999999999999999999999999999999999999999999999999999999999999999976654210


Q ss_pred             CC-CCCCCchhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          572 FA-DDQPIPLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       572 ~~-~~~~~~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      -. .+..+..++.+        .+.++...+..++...    ....+.+++..+..+..|+..|+
T Consensus       239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~----al~~l~~Ll~~ge~p~~iL~lL~  299 (620)
T PRK14954        239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVK----MLEVARFVIDNGYDEQDFLEKLI  299 (620)
T ss_pred             cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence            01 11112223333        2344444444443222    22334556666666666655543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=7.8e-28  Score=262.09  Aligned_cols=218  Identities=16%  Similarity=0.196  Sum_probs=180.7

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCC-
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWP-  414 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~-  414 (629)
                      ...++||||.+|++|+||+.+++.|+.++..|+.+| +||+||||||||++|+++|+.+.|.....         ..|. 
T Consensus         4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~   83 (397)
T PRK14955          4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE   83 (397)
T ss_pred             HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence            346799999999999999999999999999999998 88999999999999999999998853110         1122 


Q ss_pred             --ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742          415 --TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       415 --~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~  491 (629)
                        .|..+....+..+++++.....++     +.++++...+...+. ...+||||||+|.|+...++.|++.+|+++..+
T Consensus        84 c~~c~~~~~~~~~n~~~~~~~~~~~i-----d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t  158 (397)
T PRK14955         84 CESCRDFDAGTSLNISEFDAASNNSV-----DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA  158 (397)
T ss_pred             CHHHHHHhcCCCCCeEeecccccCCH-----HHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe
Confidence              223333334556677766444433     445555555543332 345799999999999999999999999999999


Q ss_pred             EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      .||++|+....+.++|++||.+++|.+++.+++..+|..++.++++.+++++++.|+..++||+|.+++.|+.+...
T Consensus       159 ~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~  235 (397)
T PRK14955        159 IFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF  235 (397)
T ss_pred             EEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999986654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.96  E-value=6.8e-28  Score=266.20  Aligned_cols=270  Identities=17%  Similarity=0.187  Sum_probs=201.5

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCC---cccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWP---TQVL  418 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~---~~v~  418 (629)
                      .+.|++||||.+|+||+||+.+++.|+.++..|..+| +|||||+|+|||++|+++|+.+.|.....  ..|.   .|..
T Consensus         4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~   83 (451)
T PRK06305          4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE   83 (451)
T ss_pred             hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence            5679999999999999999999999999999999887 78999999999999999999998753211  1122   2233


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      +....+..+++++.....++     +.++++........ ....+||||||+|.|+.+++++|++++|+++..+.||++|
T Consensus        84 i~~~~~~d~~~i~g~~~~gi-----d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t  158 (451)
T PRK06305         84 ISSGTSLDVLEIDGASHRGI-----EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT  158 (451)
T ss_pred             HhcCCCCceEEeeccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence            33334556777776444443     23344433333221 2456799999999999999999999999999999999999


Q ss_pred             cCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742          498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP  577 (629)
Q Consensus       498 N~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~  577 (629)
                      +....|.++|++||.++.|.+++.+++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+.....    +..
T Consensus       159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~----~~I  234 (451)
T PRK06305        159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP----KSL  234 (451)
T ss_pred             CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998654311    112


Q ss_pred             CchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          578 IPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       578 ~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ...++        +..+.++...+..++ ...   ....+.+++..+..+..|+..|.
T Consensus       235 t~~~V~~l~~~~~~~~vf~L~~ai~~~d-~~~---al~~l~~L~~~g~~~~~iL~~L~  288 (451)
T PRK06305        235 DPDSVAKALGLLSQDSLYTLDEAITTQN-YAQ---ALEPVTDAMNSGVAPAHFLHDLT  288 (451)
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHcCC-HHH---HHHHHHHHHHcCcCHHHHHHHHH
Confidence            22222        233344444333322 222   22334555666666666655443

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=1.1e-27  Score=272.88  Aligned_cols=269  Identities=17%  Similarity=0.234  Sum_probs=203.6

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC---CCCCcc---c
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWN---EKWPTQ---V  417 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~---~~~~~~---v  417 (629)
                      ..+|.+||||.+|++++|++++++.|+.++..++. +++||+||+|+|||++|+++|+.++|.....   ..|..|   .
T Consensus         3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~   82 (620)
T PRK14948          3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR   82 (620)
T ss_pred             cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence            46799999999999999999999999999998876 5789999999999999999999998753211   122223   3


Q ss_pred             cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEE
Q 036742          418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC  496 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILi  496 (629)
                      .+....+..++++++....++     +.++++........ .+..+||||||+|.|+.+++++|++++|++...+.|||+
T Consensus        83 ~i~~g~h~D~~ei~~~~~~~v-----d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~  157 (620)
T PRK14948         83 AIAAGNALDVIEIDAASNTGV-----DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA  157 (620)
T ss_pred             HHhcCCCccEEEEeccccCCH-----HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence            333334556778877543343     45566655443332 245679999999999999999999999999999999999


Q ss_pred             ecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC
Q 036742          497 CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ  576 (629)
Q Consensus       497 tN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~  576 (629)
                      |+++..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|+|+++|+.+.+....     
T Consensus       158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~-----  232 (620)
T PRK14948        158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGP-----  232 (620)
T ss_pred             eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCC-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999987654211     


Q ss_pred             CCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          577 PIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       577 ~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      .+..++        +..+.++...+..+ +...+..   .+.+++..+..+..|+..|+
T Consensus       233 It~e~V~~lvg~~~e~~i~~Ll~ai~~~-d~~~al~---~~~~Ll~~g~~p~~iL~~L~  287 (620)
T PRK14948        233 ITPEAVWDLLGAVPEQDLLNLLKALASN-DPESLLD---SCRQLLDRGREPLAILQGLA  287 (620)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHCC-CHHHHHH---HHHHHHHcCCCHHHHHHHHH
Confidence            111111        22234455544433 3333322   23445556666666665554

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.96  E-value=4.3e-27  Score=250.79  Aligned_cols=269  Identities=21%  Similarity=0.251  Sum_probs=203.2

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---cccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~~  420 (629)
                      ++|++||||.+|++++|++.+++.|++++..|..+| +||+||||+|||++|+++|+.+.|..... ..+..|   ..+.
T Consensus         2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~   81 (355)
T TIGR02397         2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN   81 (355)
T ss_pred             ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence            689999999999999999999999999999999886 68999999999999999999987653210 112222   2223


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      ......++++++....+.     +.++++.......+ ...++||||||+|.++..+++.|++.+++++..+.||++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~  156 (355)
T TIGR02397        82 SGSSLDVIEIDAASNNGV-----DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE  156 (355)
T ss_pred             cCCCCCEEEeeccccCCH-----HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence            334455777777533332     23344444333332 234569999999999999999999999999899999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP  579 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~  579 (629)
                      +..+.++|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.+++.|+.+.....    +..+.
T Consensus       157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~----~~it~  232 (355)
T TIGR02397       157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN----GNITY  232 (355)
T ss_pred             HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC----CCCCH
Confidence            98899999999999999999999999999999999999999999999999999999999999998765432    22232


Q ss_pred             hhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          580 LGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       580 ~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      .++++        .+.++...+..++.    ......+.+++..+.++..|+..|.
T Consensus       233 ~~v~~~~~~~~~~~i~~l~~ai~~~~~----~~a~~~~~~l~~~~~~~~~il~~l~  284 (355)
T TIGR02397       233 EDVNELLGLVDDEKLIELLEAILNKDT----AEALKILDEILESGVDPEKFLEDLI  284 (355)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            33332        34555555554432    2233445566666777766665543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.96  E-value=2.4e-27  Score=267.49  Aligned_cols=269  Identities=14%  Similarity=0.146  Sum_probs=204.1

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP  420 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~  420 (629)
                      +-|+.||||.+|+||+||+.+++.|+.++..+..+| +|||||+|+|||++|+++|+.+.|.....    ..|..|..+.
T Consensus         4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~   83 (563)
T PRK06647          4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID   83 (563)
T ss_pred             HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence            457899999999999999999999999999999987 78999999999999999999998752111    1122333333


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      ...+..++++++....+.     +.++++.......+ ...++|+||||+|.|+..++++|++++|+++..+.||++|+.
T Consensus        84 ~~~~~dv~~idgas~~~v-----ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte  158 (563)
T PRK06647         84 NDNSLDVIEIDGASNTSV-----QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE  158 (563)
T ss_pred             cCCCCCeEEecCcccCCH-----HHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence            334456677765432332     33444443333222 345679999999999999999999999999999999999999


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP  579 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~  579 (629)
                      +..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+.....    +..+.
T Consensus       159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~----~~It~  234 (563)
T PRK06647        159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD----SDITL  234 (563)
T ss_pred             hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC----CCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999987654321    22222


Q ss_pred             hhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          580 LGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       580 ~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      .++.+        .+.++...+..++..    .....+.+++..+.++..++..|+
T Consensus       235 e~V~~llg~~~~~~if~LidaI~~~D~~----~al~~l~~Ll~~G~d~~~iL~~Ll  286 (563)
T PRK06647        235 EQIRSKMGLTGDEFLEKLASSILNEDAK----ELLCVLDSVFLSGVSVEQFLLDCI  286 (563)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence            23322        344555555444322    223345666677777777776664

>PRK04195 replication factor C large subunit; Provisional

Probab=99.96  E-value=6.3e-28  Score=268.92  Aligned_cols=251  Identities=21%  Similarity=0.256  Sum_probs=187.9

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHc---CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD---GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~---g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      .+|++||+|.+|+||+|++++++.|+.|+..   |. .+++||+||||||||++|+++|+++ +..              
T Consensus         2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~~~--------------   66 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-GWE--------------   66 (482)
T ss_pred             CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-CCC--------------
Confidence            5899999999999999999999999999973   33 5689999999999999999999996 332              


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhccCCCcEEEEEe
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~~~~~~~ILit  497 (629)
                           ++++|+++.+... .+...+........... ...+||||||+|.|..    +..++|+++++.  ..++|||+|
T Consensus        67 -----~ielnasd~r~~~-~i~~~i~~~~~~~sl~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~  137 (482)
T PRK04195         67 -----VIELNASDQRTAD-VIERVAGEAATSGSLFG-ARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTA  137 (482)
T ss_pred             -----EEEEcccccccHH-HHHHHHHHhhccCcccC-CCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEec
Confidence                 6889997765432 23333333222111111 2457999999999976    567888898883  567899999


Q ss_pred             cCCccchH-HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC
Q 036742          498 EDDVDIIE-SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ  576 (629)
Q Consensus       498 N~~~~I~~-aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~  576 (629)
                      |++..+.. +|++||..+.|.+|+..++..+|..+|.++++.++++++..|++.++||+|.|++.|+.++.....+....
T Consensus       138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~  217 (482)
T PRK04195        138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLED  217 (482)
T ss_pred             cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHH
Confidence            99988876 89999999999999999999999999999999999999999999999999999999998553222111100


Q ss_pred             ---CCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          577 ---PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       577 ---~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                         ....+++..+.+++..++...........   +   ...++++++|+..|
T Consensus       218 v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~---~---~~~~~~~~~i~~~l  264 (482)
T PRK04195        218 VKTLGRRDREESIFDALDAVFKARNADQALEA---S---YDVDEDPDDLIEWI  264 (482)
T ss_pred             HHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHH---H---HcccCCHHHHHHHH
Confidence               01133344557777777776555544331   2   22456666666544

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.96  E-value=1.1e-28  Score=253.97  Aligned_cols=207  Identities=16%  Similarity=0.221  Sum_probs=184.5

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ...++|+++|+|..++|++++++++..+.++...+..||+|||||||+|||+...+.|+.+++...              
T Consensus        26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~--------------   91 (360)
T KOG0990|consen   26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP--------------   91 (360)
T ss_pred             ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCC--------------
Confidence            346789999999999999999999999999999999999999999999999999999999988422              


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-------CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEE
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL  495 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~IL  495 (629)
                      .+..++++|+++.+++     +.+++....|+....       ...++||+||+|.|+.++|++|++.+|.+..+++|++
T Consensus        92 ~~~m~lelnaSd~rgi-----d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~i  166 (360)
T KOG0990|consen   92 TTSMLLELNASDDRGI-----DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFAT  166 (360)
T ss_pred             chhHHHHhhccCccCC-----cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEE
Confidence            1234789999999887     344554444444432       2567999999999999999999999999999999999


Q ss_pred             EecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       496 itN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      +||.+..+.+++++||..++|.+++..++..++..+|+.+.+.++++....++..+.||+|.|+|.||.++..
T Consensus       167 i~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~  239 (360)
T KOG0990|consen  167 ISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKK  239 (360)
T ss_pred             eccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987654

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.96  E-value=5.8e-27  Score=266.64  Aligned_cols=269  Identities=15%  Similarity=0.166  Sum_probs=206.0

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCC---ccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWP---TQVLV  419 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~---~~v~~  419 (629)
                      +-|++||||++|+||+||+++++.|+.++..+..+| +||+||+|+|||++|+++|+.+.|.....  ..|.   .|..+
T Consensus         4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i   83 (585)
T PRK14950          4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI   83 (585)
T ss_pred             HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence            457799999999999999999999999999998887 58999999999999999999997654211  1222   22333


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ....+..++++++....+.     +.++++........ ....+||||||+|.|+.+.++.|++++|++...+.||++|+
T Consensus        84 ~~~~~~d~~~i~~~~~~~v-----d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~  158 (585)
T PRK14950         84 AEGSAVDVIEMDAASHTSV-----DDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT  158 (585)
T ss_pred             hcCCCCeEEEEeccccCCH-----HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence            3334556778877544443     33455544433332 23567999999999999999999999999999999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ....+.++|++||..+.|.+++..++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+....    .+...
T Consensus       159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~----~~~It  234 (585)
T PRK14950        159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTY----GGEIS  234 (585)
T ss_pred             ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999876532    12222


Q ss_pred             chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++        +..+.+++..+..++...    ....+..++..+..+..|+..|.
T Consensus       235 ~e~V~~ll~~s~~~~vf~Lidal~~~d~~~----al~~l~~L~~~g~~~~~il~~L~  287 (585)
T PRK14950        235 LSQVQSLLGISGDEEVKALAEALLAKDLKA----ALRTLNAVAADGADLRQFTRDLV  287 (585)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence            2232        233456666555544322    23445666777777777766554

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.95  E-value=4.5e-27  Score=248.58  Aligned_cols=255  Identities=18%  Similarity=0.213  Sum_probs=182.0

Q ss_pred             chhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+++++.||++|+|++||++++   ..|..+|+.|.++++||||||||||||+|++||+.....                
T Consensus        12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~----------------   75 (436)
T COG2256          12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA----------------   75 (436)
T ss_pred             cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence            4788999999999999999988   578999999999999999999999999999999986333                


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--C
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--D  500 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--~  500 (629)
                          +..+++... +.+ .+.+++.+..+.   ...++..|||||||++++...|.+|+..+|.  ..+.+|.+|+.  .
T Consensus        76 ----f~~~sAv~~-gvk-dlr~i~e~a~~~---~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPs  144 (436)
T COG2256          76 ----FEALSAVTS-GVK-DLREIIEEARKN---RLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPS  144 (436)
T ss_pred             ----eEEeccccc-cHH-HHHHHHHHHHHH---HhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCC
Confidence                577777322 211 222333332222   1224456999999999999999999999983  33444544432  3


Q ss_pred             ccchHHHhhcceEeeccCCCHHHHHHHHHHHH--HhcCCC-----CCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 036742          501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA--RKEDFD-----LSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA  573 (629)
Q Consensus       501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~--~kegl~-----is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~  573 (629)
                      ..+.++|+|||+++.|.+++.+++.++|.+.+  ...++.     +++++++.|+..++||.|.++|.|+.+......-.
T Consensus       145 F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~  224 (436)
T COG2256         145 FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE  224 (436)
T ss_pred             eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc
Confidence            35899999999999999999999999999944  344554     78999999999999999999999998776543221


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcC-CCh-----HHHHHHHH--------HHHHHHHcCCCHHHHHHHHhcC
Q 036742          574 DDQPIPLGWEEVLIELAAEILAD-PSP-----KRLVMVRG--------KIQKLLAEFVHPKLILLVMHYI  629 (629)
Q Consensus       574 ~~~~~~~~~ek~l~ei~~~il~~-~s~-----~~L~~ir~--------kly~lL~~~i~~~~i~~~La~~  629 (629)
                        ..+...+++.+++-.....++ +.-     ...+++|+        .+..+|..+.+|..|..+|..|
T Consensus       225 --~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~  292 (436)
T COG2256         225 --VLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI  292 (436)
T ss_pred             --ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence              111233344443322211111 111     11122222        3556888999999998888643

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.95  E-value=3.3e-26  Score=246.43  Aligned_cols=261  Identities=18%  Similarity=0.207  Sum_probs=194.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ...|++||||.+|+||+||+.+++.|.++++.|..+ ++|||||||+|||++|+++|+.+.+.......        ..-
T Consensus         4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~--------~~~   75 (367)
T PRK14970          4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN--------EDF   75 (367)
T ss_pred             hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCC
Confidence            357999999999999999999999999999998877 68899999999999999999998764320000        000


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~  502 (629)
                      ...++++++....+.     +.++++.......+ ....+||||||+|.++..+++.|++.+++++..+.||++|+....
T Consensus        76 ~~~~~~l~~~~~~~~-----~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k  150 (367)
T PRK14970         76 SFNIFELDAASNNSV-----DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK  150 (367)
T ss_pred             CcceEEeccccCCCH-----HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence            122455554332222     23333333322222 234579999999999999999999999998888999999999999


Q ss_pred             chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH
Q 036742          503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW  582 (629)
Q Consensus       503 I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~  582 (629)
                      +.+++++||..++|.+++.+++..+|..++.++|+.+++++++.|+..++||+|.+++.|+.+......    ..+..++
T Consensus       151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~----~it~~~v  226 (367)
T PRK14970        151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGK----NITRQAV  226 (367)
T ss_pred             CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----CCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987654221    1111222


Q ss_pred             H--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          583 E--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       583 e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                      +        ..+.+++..+..++....+    ..+..++..+.+|-.|+.-|
T Consensus       227 ~~~~~~~~~~~if~l~~ai~~~~~~~a~----~~~~~l~~~~~~~~~il~~l  274 (367)
T PRK14970        227 TENLNILDYDTYINVTDLILENKIPELL----LAFNEILRKGFDGHHFIAGL  274 (367)
T ss_pred             HHHhCCCCHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHH
Confidence            2        2345566655555443333    23455566677776665544

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.95  E-value=6.6e-26  Score=238.56  Aligned_cols=200  Identities=23%  Similarity=0.411  Sum_probs=164.2

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEE-EcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI-KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL-~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+.+|++||||++|+|++|++++++.|+.++..|..++++| +||||+|||++|+++++++ +..               
T Consensus         7 ~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-~~~---------------   70 (316)
T PHA02544          7 NEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-GAE---------------   70 (316)
T ss_pred             CCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-Ccc---------------
Confidence            46789999999999999999999999999999999888776 8999999999999999986 332               


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                          ++++++.... . ..+.+.+.+.......  ....+||||||+|.+ ..++++.|+.+++.+..++.||++||...
T Consensus        71 ----~~~i~~~~~~-~-~~i~~~l~~~~~~~~~--~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~  142 (316)
T PHA02544         71 ----VLFVNGSDCR-I-DFVRNRLTRFASTVSL--TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN  142 (316)
T ss_pred             ----ceEeccCccc-H-HHHHHHHHHHHHhhcc--cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence                5677776522 2 1222323333322221  134579999999999 77788999999999999999999999999


Q ss_pred             cchHHHhhcceEeeccCCCHHHHHHH-------HHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          502 DIIESVKTHCKVIKVDPPVTHEIMEV-------LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~eei~~i-------L~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      .++++|++||..+.|..|+.+++..+       +..++.++++.++++++..+++.+.||+|++++.|+.+..
T Consensus       143 ~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~  215 (316)
T PHA02544        143 GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS  215 (316)
T ss_pred             hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc
Confidence            99999999999999999998887644       3445667899999999999999999999999999997653

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.93  E-value=1.6e-24  Score=237.26  Aligned_cols=246  Identities=17%  Similarity=0.216  Sum_probs=177.9

Q ss_pred             hhhhccCCCCCCcccccHHHHHH---HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          347 FWADKHQPSSLNGFICHRHEAQL---LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~---Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      +|+++|||.+|+|++|++++++.   |..++..+..+++||+||||||||++|+++|+.+. ..                
T Consensus         1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-~~----------------   63 (413)
T PRK13342          1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-AP----------------   63 (413)
T ss_pred             ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC-CC----------------
Confidence            69999999999999999999776   99999999989999999999999999999999863 22                


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--Cc
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--DV  501 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--~~  501 (629)
                         ++++++... +.. .+.+.+.......   ..+...||||||||.++...+++|+..++.  ..+.+|.+++.  ..
T Consensus        64 ---~~~l~a~~~-~~~-~ir~ii~~~~~~~---~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~  133 (413)
T PRK13342         64 ---FEALSAVTS-GVK-DLREVIEEARQRR---SAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSF  133 (413)
T ss_pred             ---EEEEecccc-cHH-HHHHHHHHHHHhh---hcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhh
Confidence               466666432 111 1222232222211   123457999999999999999999999985  33444544432  34


Q ss_pred             cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE--DF-DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke--gl-~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      .+.++|++||.++.|.+++.+++..+|.+++...  ++ .++++++..|++.++||+|.++++|+.+...+     ....
T Consensus       134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~-----~~It  208 (413)
T PRK13342        134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGV-----DSIT  208 (413)
T ss_pred             hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CCCC
Confidence            6899999999999999999999999999987652  44 88999999999999999999999999876531     1112


Q ss_pred             chhHHHHHHHHH--------------HHHh---cCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          579 PLGWEEVLIELA--------------AEIL---ADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       579 ~~~~ek~l~ei~--------------~~il---~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..++..++....              ..+.   .+.++   ......+..+|..+.+|..|+.+|-
T Consensus       209 ~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~---~aal~~l~~~l~~G~d~~~i~rrl~  271 (413)
T PRK13342        209 LELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDP---DAALYYLARMLEAGEDPLFIARRLV  271 (413)
T ss_pred             HHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            223333332211              1111   11111   1233456778888999999998874

>PRK04132 replication factor C small subunit; Provisional

Probab=99.92  E-value=3.3e-24  Score=249.13  Aligned_cols=222  Identities=23%  Similarity=0.359  Sum_probs=175.3

Q ss_pred             EEEEc--CCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-
Q 036742          382 ILIKG--QSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-  458 (629)
Q Consensus       382 ILL~G--PPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-  458 (629)
                      -++.|  |.++||||+|+++|++++|...               ...++++||++.+++.     .++++++.+..... 
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~---------------~~~~lElNASd~rgid-----~IR~iIk~~a~~~~~  626 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENW---------------RHNFLELNASDERGIN-----VIREKVKEFARTKPI  626 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhcccc---------------cCeEEEEeCCCcccHH-----HHHHHHHHHHhcCCc
Confidence            46778  9999999999999999977532               1238999999887763     44444443332221 


Q ss_pred             --CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcC
Q 036742          459 --VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKED  536 (629)
Q Consensus       459 --~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~keg  536 (629)
                        ...+||||||+|.|+.++|++|+++||+++.+++||++||++..++++|+|||+.+.|.+++.+++..+|..+|.+++
T Consensus       627 ~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg  706 (846)
T PRK04132        627 GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG  706 (846)
T ss_pred             CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC
Confidence              235799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC---CchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 036742          537 FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP---IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL  613 (629)
Q Consensus       537 l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~---~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL  613 (629)
                      +.++++.+..|+..++||+|.|+|+||.++..+..++.+..   ....-.+.+.+++..++.+.    +...+..+++++
T Consensus       707 i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~----~~~ar~~l~ell  782 (846)
T PRK04132        707 LELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGN----FLKAREKLREIL  782 (846)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCc----HHHHHHHHHHHH
Confidence            99999999999999999999999999998764432221110   00011224455555454433    667777888887


Q ss_pred             -HcCCCHHHHHHHHh
Q 036742          614 -AEFVHPKLILLVMH  627 (629)
Q Consensus       614 -~~~i~~~~i~~~La  627 (629)
                       ..++++..|+..|.
T Consensus       783 ~~~G~~~~~iL~~l~  797 (846)
T PRK04132        783 LKQGLSGEDVLVQMH  797 (846)
T ss_pred             HHhCCCHHHHHHHHH
Confidence             78999988888764

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.92  E-value=5.1e-24  Score=237.16  Aligned_cols=205  Identities=18%  Similarity=0.282  Sum_probs=170.6

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHH--------------------------------cCCC--CeEEEEcCCCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVV--------------------------------DGNC--PHILIKGQSGSG  391 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~--------------------------------~g~~--p~ILL~GPPGtG  391 (629)
                      .+|++||+|+.|.|++|.+.+-+.+..||+                                .++.  ..+|||||||.|
T Consensus       259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG  338 (877)
T KOG1969|consen  259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG  338 (877)
T ss_pred             ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence            499999999999999999998888888885                                0111  158899999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccc
Q 036742          392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVD  470 (629)
Q Consensus       392 KTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID  470 (629)
                      |||||+.||+++ |+.                   |+||||++.+... .+.+.+...+++.... ...++.+|||||||
T Consensus       339 KTTLAHViAkqa-GYs-------------------VvEINASDeRt~~-~v~~kI~~avq~~s~l~adsrP~CLViDEID  397 (877)
T KOG1969|consen  339 KTTLAHVIAKQA-GYS-------------------VVEINASDERTAP-MVKEKIENAVQNHSVLDADSRPVCLVIDEID  397 (877)
T ss_pred             hhHHHHHHHHhc-Cce-------------------EEEecccccccHH-HHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence            999999999995 665                   7999999998864 4445555555555444 33456799999999


Q ss_pred             hhhHHHHHHHHHHHhc------cC---------------CCcEEEEEecCCcc-chHHHhhcceEeeccCCCHHHHHHHH
Q 036742          471 KAAEHIQYLIKWIMDG------YT---------------DSCKLILCCEDDVD-IIESVKTHCKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       471 ~Ls~~~q~aLlrilEe------~~---------------~~~~~ILitN~~~~-I~~aLrSR~~~I~F~ppt~eei~~iL  528 (629)
                      .-...+.+.++.+++.      +.               -..+||+|||+.+. -+.+|+--+.++.|.+|+...+.++|
T Consensus       398 Ga~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL  477 (877)
T KOG1969|consen  398 GAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERL  477 (877)
T ss_pred             CCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHH
Confidence            9998888888888761      11               12369999999887 57788888999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 036742          529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP  571 (629)
Q Consensus       529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~  571 (629)
                      +.||.+|++.++..+|..|++++.+|||.|||.||++...+..
T Consensus       478 ~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r  520 (877)
T KOG1969|consen  478 NEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDR  520 (877)
T ss_pred             HHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999998877654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.92  E-value=1.3e-24  Score=217.08  Aligned_cols=192  Identities=20%  Similarity=0.243  Sum_probs=137.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...++++.||++|+|++||+++++.++-+++     ....+|+||||||||||||||+.||+++ +..            
T Consensus        11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~------------   77 (233)
T PF05496_consen   11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-GVN------------   77 (233)
T ss_dssp             -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-T--------------
T ss_pred             chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-CCC------------
Confidence            4557799999999999999999998887775     2357899999999999999999999997 433            


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------  488 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------  488 (629)
                             +..+++.......    + +..+...+     ..+.||||||||+|+...+++|+..||.+.           
T Consensus        78 -------~~~~sg~~i~k~~----d-l~~il~~l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~a  140 (233)
T PF05496_consen   78 -------FKITSGPAIEKAG----D-LAAILTNL-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNA  140 (233)
T ss_dssp             -------EEEEECCC--SCH----H-HHHHHHT-------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-
T ss_pred             -------eEeccchhhhhHH----H-HHHHHHhc-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccccc
Confidence                   2333332111111    1 11122221     134599999999999999999999999653           


Q ss_pred             -------CCcEEEEEecCCccchHHHhhcceE-eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742          489 -------DSCKLILCCEDDVDIIESVKTHCKV-IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM  560 (629)
Q Consensus       489 -------~~~~~ILitN~~~~I~~aLrSR~~~-I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn  560 (629)
                             ...-+|.+|+....+..+|++||.+ .++..|+.+++.+++.+-+...++.++++.+.+|+..|.|+.|-|++
T Consensus       141 r~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnr  220 (233)
T PF05496_consen  141 RSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANR  220 (233)
T ss_dssp             BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred             ceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHH
Confidence                   1233677888899999999999976 57999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 036742          561 ALEACK  566 (629)
Q Consensus       561 lLq~~~  566 (629)
                      +|..+.
T Consensus       221 ll~rvr  226 (233)
T PF05496_consen  221 LLRRVR  226 (233)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998864

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.92  E-value=1.3e-23  Score=242.78  Aligned_cols=257  Identities=18%  Similarity=0.214  Sum_probs=178.6

Q ss_pred             CchhhhccCCCCCCcccccHHHHH---HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQ---LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~---~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+|+++|||.+|+|++|+++++.   .|+.++..+..+++||+|||||||||+|+++|+.+.+.               
T Consensus        15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~---------------   79 (725)
T PRK13341         15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH---------------   79 (725)
T ss_pred             cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc---------------
Confidence            348999999999999999999884   78899999999999999999999999999999986322               


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--  499 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--  499 (629)
                           ++++++.. .+.+ .+.+.+.........  .....||||||||.++...+++|+..++.  ..+.+|.+++.  
T Consensus        80 -----f~~lna~~-~~i~-dir~~i~~a~~~l~~--~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp  148 (725)
T PRK13341         80 -----FSSLNAVL-AGVK-DLRAEVDRAKERLER--HGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENP  148 (725)
T ss_pred             -----ceeehhhh-hhhH-HHHHHHHHHHHHhhh--cCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCCh
Confidence                 45566642 1211 112222222111111  12346999999999999999999999884  22333433332  


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR-------KEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF  572 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~-------kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~  572 (629)
                      ...+.++|+|||.++.|.+++.+++..+|.+++.       .+++.+++++++.|++.+.||+|.++++|+.+.......
T Consensus       149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~  228 (725)
T PRK13341        149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPD  228 (725)
T ss_pred             HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC
Confidence            2358899999999999999999999999999887       567889999999999999999999999999865432111


Q ss_pred             CCCC--CCchhHHHHHHHHHH--HHhcCCChHHH------------HHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          573 ADDQ--PIPLGWEEVLIELAA--EILADPSPKRL------------VMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       573 ~~~~--~~~~~~ek~l~ei~~--~il~~~s~~~L------------~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..+.  .....+++.+.+...  ....+...+.|            ......+..+|..+.+|..|+.+|-
T Consensus       229 ~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~  299 (725)
T PRK13341        229 EDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML  299 (725)
T ss_pred             CCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1111  111223333322110  00001111111            1233356678899999999999874

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.3e-23  Score=216.04  Aligned_cols=202  Identities=20%  Similarity=0.209  Sum_probs=142.2

Q ss_pred             cCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHH
Q 036742          328 AFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRAL  395 (629)
Q Consensus       328 ~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtL  395 (629)
                      ..+-...+++.++..+...-|         +||+|..++++.|++++.            ...+.++|++||||||||.|
T Consensus       191 d~~Lve~lerdIl~~np~ikW---------~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL  261 (491)
T KOG0738|consen  191 DADLVEALERDILQRNPNIKW---------DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL  261 (491)
T ss_pred             hHHHHHHHHHHHhccCCCcCh---------HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence            334467778878887777777         999999999999999985            33466999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--
Q 036742          396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--  473 (629)
Q Consensus       396 AraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--  473 (629)
                      |+|||.+| +..+          |++.++..+     +.++|....++.++.++...++..      +|||||||.|.  
T Consensus       262 AKAvATEc-~tTF----------FNVSsstlt-----SKwRGeSEKlvRlLFemARfyAPS------tIFiDEIDslcs~  319 (491)
T KOG0738|consen  262 AKAVATEC-GTTF----------FNVSSSTLT-----SKWRGESEKLVRLLFEMARFYAPS------TIFIDEIDSLCSQ  319 (491)
T ss_pred             HHHHHHhh-cCeE----------EEechhhhh-----hhhccchHHHHHHHHHHHHHhCCc------eeehhhHHHHHhc
Confidence            99999997 5554          223333222     578888877888888888777654      79999999992  


Q ss_pred             ----------HHHHHHHHHHHhccC---CC---cEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCC
Q 036742          474 ----------EHIQYLIKWIMDGYT---DS---CKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF  537 (629)
Q Consensus       474 ----------~~~q~aLlrilEe~~---~~---~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl  537 (629)
                                ....+.|+-.|+...   .+   +.|+.+||.+++|+++|++|+..-.|.|++..+-+..|..++-..-.
T Consensus       320 RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~  399 (491)
T KOG0738|consen  320 RGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE  399 (491)
T ss_pred             CCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence                      223444555555322   22   33444689999999999999987666566555666666666655433


Q ss_pred             CCCHHHHHHHHHHccC----CHHHHHH
Q 036742          538 DLSMTFAAKIATKAKQ----NLRKAIM  560 (629)
Q Consensus       538 ~is~e~L~~Ia~~s~G----DiR~AIn  560 (629)
                      .-++-.++.|++.+.|    ||+.+..
T Consensus       400 ~~~~~~~~~lae~~eGySGaDI~nvCr  426 (491)
T KOG0738|consen  400 LDDPVNLEDLAERSEGYSGADITNVCR  426 (491)
T ss_pred             CCCCccHHHHHHHhcCCChHHHHHHHH
Confidence            3334447777777655    5554433

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.91  E-value=7.4e-23  Score=219.44  Aligned_cols=213  Identities=15%  Similarity=0.264  Sum_probs=170.0

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC----C---CCCCcccc---
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW----N---EKWPTQVL---  418 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~----~---~~~~~~v~---  418 (629)
                      ....|..+++|+||+++++.|..++..|+.+| +||+||+|+|||++|+.+|+.+.|....    .   ..+..|..   
T Consensus        15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~   94 (351)
T PRK09112         15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ   94 (351)
T ss_pred             CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence            34789999999999999999999999999997 8899999999999999999999873210    0   01112222   


Q ss_pred             ccccCCcceEEEecc-cchh---hHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742          419 VPVASSAHHVELNVN-LQAN---AKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       419 ~~i~sS~~vleInas-~~~~---~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~  493 (629)
                      +....+..++.+... +..+   ...+..+.++++...+.... .+..+||||||+|.|+..++++|++++|+++..+.|
T Consensus        95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f  174 (351)
T PRK09112         95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF  174 (351)
T ss_pred             HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence            223345556666432 1111   12234566777777666543 345679999999999999999999999999999999


Q ss_pred             EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                      ||+|+.+..++++|+|||..+.|.+++.+++..+|...+...+  ++++.+..+++.++|++|.|+++|+.
T Consensus       175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~  243 (351)
T PRK09112        175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY  243 (351)
T ss_pred             EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999998654443  67889999999999999999999953

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.90  E-value=4.3e-23  Score=216.35  Aligned_cols=199  Identities=26%  Similarity=0.353  Sum_probs=163.5

Q ss_pred             CcccccHHHHHHHHHHHH-cCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC----CccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVV-DGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKW----PTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~-~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~----~~~v~~~i~sS~~vleIn  431 (629)
                      +++++++.++..+..|+. .++.+| +||+||||+|||++|.++|++++|........    ..|..+.......+++++
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~   80 (325)
T COG0470           1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN   80 (325)
T ss_pred             CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence            467888998888888887 777899 99999999999999999999998775433211    133444555667899999


Q ss_pred             cccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhc
Q 036742          432 VNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH  510 (629)
Q Consensus       432 as~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR  510 (629)
                      +++.+... +..+.++++...+.... .+..+||||||+|.|+.+++++|++++|+++.+++|||+||.+..|.++|+||
T Consensus        81 ~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR  159 (325)
T COG0470          81 PSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR  159 (325)
T ss_pred             ccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence            98877643 45677888887766654 35667999999999999999999999999999999999999999999999999


Q ss_pred             ceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       511 ~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      |+.+.|.+++      .+..++..+     ++.+..++..+.||+|.+++.|+++...
T Consensus       160 c~~i~f~~~~------~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~  206 (325)
T COG0470         160 CQRIRFKPPS------RLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL  206 (325)
T ss_pred             ceeeecCCch------HHHHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence            9999999843      333444433     5678899999999999999999998765

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=1.3e-22  Score=214.53  Aligned_cols=264  Identities=14%  Similarity=0.218  Sum_probs=187.4

Q ss_pred             CCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc--cCCcceEEEec
Q 036742          356 SLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV--ASSAHHVELNV  432 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i--~sS~~vleIna  432 (629)
                      .|++|+||+.+++.|...+..|+++ ++||+||+|+||+++|.++|+.+.|...    +..|..|.+  ...+.+..+.+
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~----c~~c~~~~~~~~~hPDl~~i~p   77 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS----PSKNIRRRLEEGNHPDLLWVEP   77 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC----CCCcHhcccccCCCCCEEEEec
Confidence            4799999999999999999999975 5889999999999999999999988752    223333332  23344455544


Q ss_pred             cc-chh-----------------hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742          433 NL-QAN-----------------AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       433 s~-~~~-----------------~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~  493 (629)
                      .. ..+                 ...+-.+.++++...+...+. +..+|+|||++|.|+..++|+|++++|+++ ++.|
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f  156 (314)
T PRK07399         78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL  156 (314)
T ss_pred             cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence            21 000                 011234567787776666543 456899999999999999999999999999 8899


Q ss_pred             EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--
Q 036742          494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP--  571 (629)
Q Consensus       494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~--  571 (629)
                      ||+|+.++.|+++|+|||+.+.|.+++.+++.++|...+..++..   ..+..++..++|+++.|+++++........  
T Consensus       157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~~~~~~~  233 (314)
T PRK07399        157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQSIPPELL  233 (314)
T ss_pred             EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876544332   235788999999999999998753221000  


Q ss_pred             --CC---CCCCCchhHHHHH------------HHHHHHHhc-CCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          572 --FA---DDQPIPLGWEEVL------------IELAAEILA-DPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       572 --~~---~~~~~~~~~ek~l------------~ei~~~il~-~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                        +.   .+......|.+.+            .+....++. ......+.....+....|..++.|+++|..|+
T Consensus       234 ~~~~~~~~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~  307 (314)
T PRK07399        234 QKLEQPPKSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQKTKNRQLLKQLEKLRKQLLSYVQPRLAWEVTL  307 (314)
T ss_pred             HHHHhcccCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence              00   0000001111111            111111111 12345566666778889999999999999875

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=2.6e-22  Score=216.29  Aligned_cols=208  Identities=14%  Similarity=0.232  Sum_probs=168.1

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCC--------------CCCcc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNE--------------KWPTQ  416 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~--------------~~~~~  416 (629)
                      .+|.++++|+||+++++.|.+++..|+++| +||+||+|+||+++|.++|+.++|......              .+..|
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c   92 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA   92 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence            689999999999999999999999999998 889999999999999999999987642111              11222


Q ss_pred             ccccccCCcceEEEecc-cchh---hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742          417 VLVPVASSAHHVELNVN-LQAN---AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       417 v~~~i~sS~~vleInas-~~~~---~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~  491 (629)
                      ..+.......+..+.+. +..+   ...+.++.++++...+..... ...+||||||+|.|+...+++|++++|+++..+
T Consensus        93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~  172 (365)
T PRK07471         93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS  172 (365)
T ss_pred             HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence            23333455666667552 1111   122446778888877776654 456799999999999999999999999999999


Q ss_pred             EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      .||++|+.++.+.++|+|||..+.|.+++.+++.++|....    ...+++.+..++..++|+++.|+.+++
T Consensus       173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~  240 (365)
T PRK07471        173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAG  240 (365)
T ss_pred             EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999999999999999999999999999997642    334555567899999999999999985

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=3.6e-22  Score=216.93  Aligned_cols=197  Identities=14%  Similarity=0.205  Sum_probs=154.1

Q ss_pred             CCCcccccHHHHHHHHHHHHcCC---------CCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---cc
Q 036742          356 SLNGFICHRHEAQLLKELVVDGN---------CPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VA  422 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~---------~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~  422 (629)
                      .|++|+||+.+++.|+.++..+.         .+| +||+||+|+|||++|+++|+.++|.......|..|-.|.   ..
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~   82 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG   82 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence            36999999999999999999875         665 889999999999999999999988642111122333222   33


Q ss_pred             CCcceEEEeccc-chhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          423 SSAHHVELNVNL-QANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       423 sS~~vleInas~-~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      ....+..+.+.. ..+     .+.++++...+...+ .+..+|+||||+|.|+..++++|++++|+++..+.||++|+.+
T Consensus        83 ~hpD~~~i~~~~~~i~-----i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~  157 (394)
T PRK07940         83 THPDVRVVAPEGLSIG-----VDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP  157 (394)
T ss_pred             CCCCEEEeccccccCC-----HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence            444455554431 122     244566665544433 3456799999999999999999999999999999999999999


Q ss_pred             ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      +.++++|+|||+.+.|.+|+.+++.++|..   +.+  ++++.+..++..++|+++.|+.++
T Consensus       158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             HHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence            999999999999999999999999988873   223  578888999999999999887765

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.89  E-value=1.7e-21  Score=207.18  Aligned_cols=192  Identities=19%  Similarity=0.220  Sum_probs=151.9

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ..+|..+|||.+|++++|++++++.|..++.     ....+++||+||||||||++|+++|+++ +..+           
T Consensus        12 ~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~~~~-----------   79 (328)
T PRK00080         12 EDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-GVNI-----------   79 (328)
T ss_pred             cchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-CCCe-----------
Confidence            4568889999999999999999999988885     2335689999999999999999999997 3321           


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------  488 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------  488 (629)
                              ..++.......     ..+..+...+     ..+.||||||||.+....++.|+..++.+.           
T Consensus        80 --------~~~~~~~~~~~-----~~l~~~l~~l-----~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~  141 (328)
T PRK00080         80 --------RITSGPALEKP-----GDLAAILTNL-----EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA  141 (328)
T ss_pred             --------EEEecccccCh-----HHHHHHHHhc-----ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc
Confidence                    22222111111     1111222211     234699999999999888888888887542           


Q ss_pred             -------CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742          489 -------DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM  560 (629)
Q Consensus       489 -------~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn  560 (629)
                             ....+|++|+....+.++|++|| ..+.|.+|+.+++.++|.+.+...++.++++++..|++.|.|++|.+.+
T Consensus       142 ~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~  221 (328)
T PRK00080        142 RSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANR  221 (328)
T ss_pred             cceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHH
Confidence                   22457888898888999999998 5799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 036742          561 ALEACK  566 (629)
Q Consensus       561 lLq~~~  566 (629)
                      +|+.+.
T Consensus       222 ~l~~~~  227 (328)
T PRK00080        222 LLRRVR  227 (328)
T ss_pred             HHHHHH
Confidence            998754

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.89  E-value=5.4e-22  Score=206.85  Aligned_cols=199  Identities=17%  Similarity=0.283  Sum_probs=151.8

Q ss_pred             CchhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+++++.||.+++|++||++++   ..|..+++++.+|.++||||||||||+||+.|+.-....               
T Consensus       125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---------------  189 (554)
T KOG2028|consen  125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---------------  189 (554)
T ss_pred             cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---------------
Confidence            35688999999999999999987   578999999999999999999999999999999864222               


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--  499 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--  499 (629)
                        +..++++.+.....  ..+.++++...+.....  .++.|||||||++++...|..|+..+|.  ..+.+|.+|..  
T Consensus       190 --SyrfvelSAt~a~t--~dvR~ife~aq~~~~l~--krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENP  261 (554)
T KOG2028|consen  190 --SYRFVELSATNAKT--NDVRDIFEQAQNEKSLT--KRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENP  261 (554)
T ss_pred             --ceEEEEEeccccch--HHHHHHHHHHHHHHhhh--cceeEEEeHHhhhhhhhhhhcccceecc--CceEEEecccCCC
Confidence              23477887743222  12233333322222221  2334999999999999999999999884  34455554433  


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHH------hc--C-----CCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR------KE--D-----FDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~------ke--g-----l~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      ...+..+|.|||.++.+.+++.+.+..+|.+...      +.  +     +.+++.++++|+..+.||.|.|+|+|+...
T Consensus       262 SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~  341 (554)
T KOG2028|consen  262 SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSL  341 (554)
T ss_pred             ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            3458999999999999999999999999988432      21  1     246788999999999999999999999863

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.88  E-value=8.8e-21  Score=200.41  Aligned_cols=189  Identities=20%  Similarity=0.285  Sum_probs=153.3

Q ss_pred             CCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742          356 SLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      +|++|+||+.+++.|..++..|..+|+ ||+||+|+|||++|+++|+.+.|....            .....+..+.+.+
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------------~~h~D~~~~~~~~   69 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ------------REYVDIIEFKPIN   69 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC------------CCCCCeEEecccc
Confidence            589999999999999999999999986 799999999999999999998775321            1222344554422


Q ss_pred             chhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE
Q 036742          435 QANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV  513 (629)
Q Consensus       435 ~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~  513 (629)
                      ...+   -.+.++++...+...+ .+..+|+|||++|.|+..++++|++++|+++.++.|||+|+.++.+.++|+|||++
T Consensus        70 ~~~i---~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~  146 (313)
T PRK05564         70 KKSI---GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI  146 (313)
T ss_pred             CCCC---CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence            2222   1345666666554443 34567999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      +.|.+++.+++..+|.....    .++++.+..++..++|...+|+..+.
T Consensus       147 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~  192 (313)
T PRK05564        147 YKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIE  192 (313)
T ss_pred             eeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999998875442    46788888999999999998876653

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.87  E-value=2.5e-21  Score=218.16  Aligned_cols=230  Identities=20%  Similarity=0.270  Sum_probs=165.4

Q ss_pred             ccccCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          325 EKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       325 ~~~~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++....|..-+++. ..-.+.++|.+||||.+|++++|++..++.|+..+......|+||+||||||||++|+++..++.
T Consensus        33 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~  111 (531)
T TIGR02902        33 DKESKKELEKLNKM-RAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK  111 (531)
T ss_pred             ehhhhHHHHHHHHh-hhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence            44444444333332 22356789999999999999999999999999888777777999999999999999999988653


Q ss_pred             CCCCCCCCCCccccccccCCcceEEEeccc----chhhHHHHHHHHHHH---H----HHhcc----------CcCCCCeE
Q 036742          405 GDACWNEKWPTQVLVPVASSAHHVELNVNL----QANAKYALMGLVKEI---R----DNLAI----------TPEVSNAM  463 (629)
Q Consensus       405 g~~~~~~~~~~~v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei---~----~~~~~----------~~~~~~kV  463 (629)
                      ....          .+......++++++..    .++..   ...+...   .    ..+..          .....+.+
T Consensus       112 ~~~~----------s~~~~~~~fi~id~~~~~~~~~~~~---~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~  178 (531)
T TIGR02902       112 KNPA----------SPFKEGAAFVEIDATTARFDERGIA---DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGV  178 (531)
T ss_pred             hccC----------CCcCCCCCEEEEccccccCCccccc---hhhcCCcccchhccccccccCCcccccCchhhccCCcE
Confidence            1110          0011123367777642    11111   0111100   0    00000          00123459


Q ss_pred             EEEEccchhhHHHHHHHHHHHhcc----------------------------CCCcEEEEEe-cCCccchHHHhhcceEe
Q 036742          464 IVIYEVDKAAEHIQYLIKWIMDGY----------------------------TDSCKLILCC-EDDVDIIESVKTHCKVI  514 (629)
Q Consensus       464 IIIDEID~Ls~~~q~aLlrilEe~----------------------------~~~~~~ILit-N~~~~I~~aLrSR~~~I  514 (629)
                      |||||||.|+...|+.|++++|..                            +.++++|++| +.++.+.+++++||..+
T Consensus       179 L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I  258 (531)
T TIGR02902       179 LFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI  258 (531)
T ss_pred             EEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee
Confidence            999999999999999999998752                            1234566654 56788999999999999


Q ss_pred             eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742          515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN  569 (629)
Q Consensus       515 ~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~  569 (629)
                      .|++++.+++..+++..+.+.++.+++++++.|+..+. |.|.++|+++.++..+
T Consensus       259 ~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A  312 (531)
T TIGR02902       259 FFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIA  312 (531)
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888775 8999999999876543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.86  E-value=3e-20  Score=194.71  Aligned_cols=182  Identities=16%  Similarity=0.219  Sum_probs=142.3

Q ss_pred             CCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          355 SSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      ++|+||+|++++++.|..++.     .+..++++|+||||||||++|+++|+++. ..+                   ..
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~-------------------~~   60 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-VNL-------------------KI   60 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCE-------------------EE
Confidence            468999999999999999997     34567899999999999999999999973 221                   12


Q ss_pred             EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------------------CCc
Q 036742          430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------------DSC  491 (629)
Q Consensus       430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------------~~~  491 (629)
                      +......... .+...+.    ..     ..+.||||||+|.+....++.|+.+++...                  ...
T Consensus        61 ~~~~~~~~~~-~l~~~l~----~~-----~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  130 (305)
T TIGR00635        61 TSGPALEKPG-DLAAILT----NL-----EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF  130 (305)
T ss_pred             eccchhcCch-hHHHHHH----hc-----ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCe
Confidence            2211100100 1111111    11     224599999999999998999988887443                  224


Q ss_pred             EEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          492 KLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      .+|.+++....+.+++++|| ..+.|.+++.+++.++|...+...++.+++++++.|++.+.|++|.++++++.+.
T Consensus       131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~  206 (305)
T TIGR00635       131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR  206 (305)
T ss_pred             EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57778888888999999999 5689999999999999999999999999999999999999999999999998754

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.86  E-value=5.9e-21  Score=217.21  Aligned_cols=224  Identities=15%  Similarity=0.216  Sum_probs=143.4

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-----eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-----HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-----~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      ....+|++||+|++++||+||++.++.|+.|+.....+     .++|+|||||||||+++++|+++ +..+.+.  .+.+
T Consensus        69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-~~~~~Ew--~npv  145 (637)
T TIGR00602        69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-GIQVQEW--SNPT  145 (637)
T ss_pred             cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-hhHHHHH--hhhh
Confidence            34578999999999999999999999999999865443     28999999999999999999986 3322110  0000


Q ss_pred             cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhc----cC---cCCCCeEEEEEccchhhHHHHHHHHHHHh-cc--
Q 036742          418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA----IT---PEVSNAMIVIYEVDKAAEHIQYLIKWIMD-GY--  487 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~----~~---~~~~~kVIIIDEID~Ls~~~q~aLlrilE-e~--  487 (629)
                      .+......+.+...............+.++++.....    ..   ......||||||+|.+......++..++. .+  
T Consensus       146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e  225 (637)
T TIGR00602       146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS  225 (637)
T ss_pred             hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc
Confidence            0000011100000000000000001122333332211    11   12345699999998875433223333333 11  


Q ss_pred             CCCcEEEEEecCCcc---------------chHHHhh--cceEeeccCCCHHHHHHHHHHHHHhcCCC------C-CHHH
Q 036742          488 TDSCKLILCCEDDVD---------------IIESVKT--HCKVIKVDPPVTHEIMEVLIQIARKEDFD------L-SMTF  543 (629)
Q Consensus       488 ~~~~~~ILitN~~~~---------------I~~aLrS--R~~~I~F~ppt~eei~~iL~~i~~kegl~------i-s~e~  543 (629)
                      ...+++|+|+++...               +.++|++  |+.+|.|+|++..++.++|.+|+.+++..      + ++++
T Consensus       226 ~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~  305 (637)
T TIGR00602       226 IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTS  305 (637)
T ss_pred             CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHH
Confidence            345778887774211               2378887  66789999999999999999999887532      2 4678


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742          544 AAKIATKAKQNLRKAIMALEACKALN  569 (629)
Q Consensus       544 L~~Ia~~s~GDiR~AInlLq~~~~~~  569 (629)
                      +..|+..++||+|.||++||+++..+
T Consensus       306 l~~I~~~s~GDiRsAIn~LQf~~~~~  331 (637)
T TIGR00602       306 VELLCQGCSGDIRSAINSLQFSSSKS  331 (637)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHhcC
Confidence            99999999999999999999986654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.84  E-value=1.1e-19  Score=193.68  Aligned_cols=196  Identities=15%  Similarity=0.235  Sum_probs=151.1

Q ss_pred             CCcccc-cHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcccccccc---CCcceEEE
Q 036742          357 LNGFIC-HRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQVLVPVA---SSAHHVEL  430 (629)
Q Consensus       357 fddIiG-~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~v~~~i~---sS~~vleI  430 (629)
                      |+.|+| |+.+++.|+..+..|+++|. ||+||+|+||+++|+++|+.+.|.... ...|..|-.|...   ....+..+
T Consensus         4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i   83 (329)
T PRK08058          4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV   83 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence            478888 99999999999999999986 899999999999999999999876421 1222333333333   33444444


Q ss_pred             ecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhh
Q 036742          431 NVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT  509 (629)
Q Consensus       431 nas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrS  509 (629)
                      ... ...   +..+.++++...+...+ .+..+|+||||+|.|+..++++|++++|+++..+.|||+|+.+..|.++|+|
T Consensus        84 ~~~-~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS  159 (329)
T PRK08058         84 APD-GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS  159 (329)
T ss_pred             ccc-ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence            442 111   22456677766655443 2456799999999999999999999999999999999999999999999999


Q ss_pred             cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       510 R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      ||.+++|.+++.+++..+|.    ++|  ++++....++.. .|++++|+.+++
T Consensus       160 Rc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~  206 (329)
T PRK08058        160 RCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE  206 (329)
T ss_pred             hceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence            99999999999999988885    345  455555556655 478999988775

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.84  E-value=8.2e-20  Score=186.23  Aligned_cols=186  Identities=17%  Similarity=0.260  Sum_probs=147.7

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ...||++|+|++||+++++.|+-+++     .....|+|||||||.||||||+.||+++ +-.+           .+ .+
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~-----------k~-ts   84 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GVNL-----------KI-TS   84 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCe-----------Ee-cc
Confidence            45789999999999999999998886     2235699999999999999999999997 4432           11 11


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC----------------
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------------  488 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------------  488 (629)
                      +.+++     ..+          ++...+..  -..+.|+|||||+++++.+.+.|+..||.|.                
T Consensus        85 Gp~le-----K~g----------DlaaiLt~--Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l  147 (332)
T COG2255          85 GPALE-----KPG----------DLAAILTN--LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRL  147 (332)
T ss_pred             ccccc-----Chh----------hHHHHHhc--CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEec
Confidence            11211     111          11211111  1223599999999999999999999999775                


Q ss_pred             --CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          489 --DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       489 --~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                        ...-+|.+|+..-.|..+|+.|| ...++..|+.+++.+++.+-+...++.++++...+|+..+.|..|-|+.+|...
T Consensus       148 dLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV  227 (332)
T COG2255         148 DLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV  227 (332)
T ss_pred             cCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence              11235778888888999999999 568888999999999999999999999999999999999999999999999654

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.84  E-value=1.3e-19  Score=191.78  Aligned_cols=192  Identities=18%  Similarity=0.214  Sum_probs=152.8

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc---cccCCcceEEE--ecccch
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV---PVASSAHHVEL--NVNLQA  436 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~---~i~sS~~vleI--nas~~~  436 (629)
                      ++.+.+.|...+..|+.+| +||+||+|+||+++|.++|+.+.|.....  +..|..|   ....+.++..+  .+....
T Consensus         9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~--~~~c~~c~~~~~g~HPD~~~i~~~p~~~~   86 (319)
T PRK08769          9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP--AAAQRTRQLIAAGTHPDLQLVSFIPNRTG   86 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC--CCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence            6778899999999999998 88999999999999999999998865311  1122222   23345556666  332211


Q ss_pred             -h-hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE
Q 036742          437 -N-AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV  513 (629)
Q Consensus       437 -~-~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~  513 (629)
                       . ...+.++.++++.+.....+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.|+++|+|||+.
T Consensus        87 ~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~  166 (319)
T PRK08769         87 DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQR  166 (319)
T ss_pred             ccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheE
Confidence             0 123557888888877766654 4568999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      +.|.+|+.+++..+|..    .+  +++..+..++..++|.+..|+..+
T Consensus       167 i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        167 LEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             eeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHh
Confidence            99999999999999863    23  455666778899999998888776

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=7.4e-20  Score=191.51  Aligned_cols=215  Identities=14%  Similarity=0.136  Sum_probs=151.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      +.-.-.+++||.|.++.++.|++.+.           -|  ...++|||||||||||.||+|+|++..+.          
T Consensus       143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At----------  212 (406)
T COG1222         143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT----------  212 (406)
T ss_pred             ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce----------
Confidence            44445688999999999999999996           12  23489999999999999999999986433          


Q ss_pred             ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742          417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD  485 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE  485 (629)
                                ++.+..+..  +.+.+.+--+-+++.|..+....++||||||||.+.           .++|..+..++.
T Consensus       213 ----------FIrvvgSEl--VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~  280 (406)
T COG1222         213 ----------FIRVVGSEL--VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN  280 (406)
T ss_pred             ----------EEEeccHHH--HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence                      445444321  111222333445556667777778899999999992           367777777665


Q ss_pred             c-----cCCCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC---
Q 036742          486 G-----YTDSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ---  553 (629)
Q Consensus       486 e-----~~~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G---  553 (629)
                      +     ...++.||++||+++-|+++|.+-  + ..|+|+.|+.+...+||+-++.+.++  .++ .++.|+..+.|   
T Consensus       281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sG  358 (406)
T COG1222         281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSG  358 (406)
T ss_pred             hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCch
Confidence            3     247789999999999999999984  4 57999999999999999988887554  343 37788887765   


Q ss_pred             -CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          554 -NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       554 -DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                       |++.+..-.-..+.   .-.....+..|+.+.+.+++.
T Consensus       359 AdlkaictEAGm~Ai---R~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         359 ADLKAICTEAGMFAI---RERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             HHHHHHHHHHhHHHH---HhccCeecHHHHHHHHHHHHh
Confidence             33333322222222   222344455777777777665

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.83  E-value=1.2e-19  Score=177.62  Aligned_cols=180  Identities=20%  Similarity=0.269  Sum_probs=137.5

Q ss_pred             HHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc---CCcceEEEecccc-hhhHHH
Q 036742          368 QLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA---SSAHHVELNVNLQ-ANAKYA  441 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~---sS~~vleInas~~-~~~k~~  441 (629)
                      +.|.+.+..+..+| +||+||+|+|||++|+++++.+.+..... ..+..|..|...   ....+..+..... .+    
T Consensus         2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~----   77 (188)
T TIGR00678         2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK----   77 (188)
T ss_pred             hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC----
Confidence            46888888998876 88999999999999999999998752111 111222222222   2223344433211 12    


Q ss_pred             HHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCC
Q 036742          442 LMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV  520 (629)
Q Consensus       442 l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt  520 (629)
                       .+.++++...+...+ ....+||||||+|.|+..+++.|++.+|+++..+.||++|+....+.++|++||.++.|.+++
T Consensus        78 -~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~  156 (188)
T TIGR00678        78 -VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS  156 (188)
T ss_pred             -HHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence             245555555554443 234579999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742          521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA  558 (629)
Q Consensus       521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A  558 (629)
                      .+++.++|...    |  ++++++..|++.++||+|+|
T Consensus       157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~  188 (188)
T TIGR00678       157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA  188 (188)
T ss_pred             HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence            99999999765    4  68999999999999999975

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.83  E-value=9.2e-20  Score=175.43  Aligned_cols=156  Identities=22%  Similarity=0.388  Sum_probs=116.4

Q ss_pred             ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc---ccccccCCcceEEEecccc-h
Q 036742          362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ---VLVPVASSAHHVELNVNLQ-A  436 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~---v~~~i~sS~~vleInas~~-~  436 (629)
                      ||+.+++.|.+++..++.+| +||+||+|+||+++|+++|+.++|.......+..|   ..+......++..+..... .
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~   80 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK   80 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence            79999999999999999998 68999999999999999999998876543222233   3333445677888876533 1


Q ss_pred             hhHHHHHHHHHHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEee
Q 036742          437 NAKYALMGLVKEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK  515 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~  515 (629)
                      .+   ..+.++++...+...... ..+|+||||+|.|+.+++++|+++||+++.++.|||+|+.+..|+++|+|||+.+.
T Consensus        81 ~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~  157 (162)
T PF13177_consen   81 SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIR  157 (162)
T ss_dssp             SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEE
T ss_pred             hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEe
Confidence            11   136677777777666544 57799999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 036742          516 VDPPV  520 (629)
Q Consensus       516 F~ppt  520 (629)
                      |.+++
T Consensus       158 ~~~ls  162 (162)
T PF13177_consen  158 FRPLS  162 (162)
T ss_dssp             E----
T ss_pred             cCCCC
Confidence            98763

...

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.83  E-value=2.1e-19  Score=185.28  Aligned_cols=193  Identities=17%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             CCCcccccHHHHHHHHHHHH----------c-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          356 SLNGFICHRHEAQLLKELVV----------D-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~----------~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      .+++++|.+.+++.|++++.          .     +...|+||+||||||||++|+++|+.+.....            
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~------------   71 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV------------   71 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc------------
Confidence            35889999999988876542          1     23458999999999999999999998743221            


Q ss_pred             ccCCcceEEEecccchhhHH-HHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------HHHHHHHHHHHhccCCCc
Q 036742          421 VASSAHHVELNVNLQANAKY-ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------EHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~-~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------~~~q~aLlrilEe~~~~~  491 (629)
                       .....++++++++..+... .....++++....      .+.||||||||.|.        .++++.|++.++.....+
T Consensus        72 -~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~  144 (261)
T TIGR02881        72 -LSKGHLIEVERADLVGEYIGHTAQKTREVIKKA------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF  144 (261)
T ss_pred             -ccCCceEEecHHHhhhhhccchHHHHHHHHHhc------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence             2233466666543211100 0011222222221      23599999999975        457788999999877777


Q ss_pred             EEEEEecCCc-----cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------ccCCH
Q 036742          492 KLILCCEDDV-----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK----------AKQNL  555 (629)
Q Consensus       492 ~~ILitN~~~-----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~----------s~GDi  555 (629)
                      .+|+++....     .+.++|++|| ..+.|++|+.+++.+++++++...++.++++++..|++.          +.||.
T Consensus       145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~  224 (261)
T TIGR02881       145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNA  224 (261)
T ss_pred             EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchH
Confidence            7777764322     2678999999 679999999999999999999999999999999888654          36999


Q ss_pred             HHHHHHHHHHHh
Q 036742          556 RKAIMALEACKA  567 (629)
Q Consensus       556 R~AInlLq~~~~  567 (629)
                      |.+.|+++.+..
T Consensus       225 R~~~n~~e~a~~  236 (261)
T TIGR02881       225 RYVRNIIEKAIR  236 (261)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988643

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.83  E-value=3e-19  Score=189.43  Aligned_cols=193  Identities=14%  Similarity=0.154  Sum_probs=151.8

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccc---cccccCCcceEEEecccchh
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQV---LVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v---~~~i~sS~~vleInas~~~~  437 (629)
                      +....+.|...+..|+.+| +||+||.|+||+++|+++|+.+.|..... ..|..|-   .+....+..+..+.+.....
T Consensus         7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~   86 (325)
T PRK06871          7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD   86 (325)
T ss_pred             hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence            5677789999999999987 55999999999999999999998864211 2233333   33344566677776532222


Q ss_pred             hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742          438 AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV  516 (629)
Q Consensus       438 ~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F  516 (629)
                         +-++.+|++.+.....+. +..+|+|||++|.|+..++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|
T Consensus        87 ---I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~  163 (325)
T PRK06871         87 ---IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI  163 (325)
T ss_pred             ---CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence               224677777766655543 5678999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      .+++.+++.++|.....     .....+..++..++|.+..|+.+++
T Consensus       164 ~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p~~A~~~~~  205 (325)
T PRK06871        164 HPPEEQQALDWLQAQSS-----AEISEILTALRINYGRPLLALTFLE  205 (325)
T ss_pred             CCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCHHHHHHHhh
Confidence            99999999999986531     2344466677888998888877763

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.83  E-value=2.3e-19  Score=191.37  Aligned_cols=194  Identities=13%  Similarity=0.155  Sum_probs=155.1

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccc---ccCCcceEEEecccchh
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVP---VASSAHHVELNVNLQAN  437 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~---i~sS~~vleInas~~~~  437 (629)
                      +....+.|.+.+..|+.+| +||+||+|+||+++|.++|+.+.|..... ..|..|-+|.   ...+..+..+.+.... 
T Consensus         7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~-   85 (334)
T PRK07993          7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK-   85 (334)
T ss_pred             ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-
Confidence            5667788999999999997 55999999999999999999998853211 2234444333   4456667777654221 


Q ss_pred             hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742          438 AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV  516 (629)
Q Consensus       438 ~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F  516 (629)
                       ..+-++.++++.+.+...+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.|+++|+|||+.+.|
T Consensus        86 -~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~  164 (334)
T PRK07993         86 -SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL  164 (334)
T ss_pred             -ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence             11335778888777666553 5678999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      ++++.+++..+|..   +  ..++++.+..++..++|++.+|+.+++
T Consensus       165 ~~~~~~~~~~~L~~---~--~~~~~~~a~~~~~la~G~~~~Al~l~~  206 (334)
T PRK07993        165 APPPEQYALTWLSR---E--VTMSQDALLAALRLSAGAPGAALALLQ  206 (334)
T ss_pred             CCCCHHHHHHHHHH---c--cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999863   2  235677788889999999999988863

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.82  E-value=2.6e-19  Score=190.54  Aligned_cols=190  Identities=18%  Similarity=0.199  Sum_probs=147.4

Q ss_pred             HHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcccccc---ccCCcceEEEecccchhhHHHH
Q 036742          368 QLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQVLVP---VASSAHHVELNVNLQANAKYAL  442 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~v~~~---i~sS~~vleInas~~~~~k~~l  442 (629)
                      ...++++..|+.+| +||+||+|+|||++|+++|+.+.|.... ...|..|.+|.   ...+..+..+.+....  +.+-
T Consensus        10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i~   87 (328)
T PRK05707         10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTIK   87 (328)
T ss_pred             HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCCC
Confidence            35667777888887 7799999999999999999999886421 12233444333   3355566666553211  1122


Q ss_pred             HHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCH
Q 036742          443 MGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT  521 (629)
Q Consensus       443 ~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~  521 (629)
                      .+.+|++...+...+ .+..+|+|||++|.|+.+++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|.+++.
T Consensus        88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~  167 (328)
T PRK05707         88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN  167 (328)
T ss_pred             HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence            467788777766654 3566799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      +++..+|.....    ..+++.+..++..++|.+..|+.+++
T Consensus       168 ~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~  205 (328)
T PRK05707        168 EESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE  205 (328)
T ss_pred             HHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence            999999975431    23566677888999999998887653

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.81  E-value=2.4e-19  Score=180.45  Aligned_cols=183  Identities=17%  Similarity=0.197  Sum_probs=139.4

Q ss_pred             hhhccCCCCCCcccccHHHHHH---HHHHHHc----CC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          348 WADKHQPSSLNGFICHRHEAQL---LKELVVD----GN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~---Lk~~L~~----g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      ..+..+-.+|+|+|||++++..   |.++|+.    |.  ..++|||||||||||++|+++|++..-+            
T Consensus       111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp------------  178 (368)
T COG1223         111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP------------  178 (368)
T ss_pred             hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc------------
Confidence            3456677899999999998864   4455542    22  3489999999999999999999986433            


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh------------HHHHHHHHHHHhc
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------------EHIQYLIKWIMDG  486 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------------~~~q~aLlrilEe  486 (629)
                              ++.+++....|  .-+.+-.+.+.+.|..+....+||+||||+|.+.            .+..|+|+.-|+.
T Consensus       179 --------~l~vkat~liG--ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg  248 (368)
T COG1223         179 --------LLLVKATELIG--EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG  248 (368)
T ss_pred             --------eEEechHHHHH--HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC
Confidence                    45555532222  1233445566667777777788999999999982            2567888887774


Q ss_pred             cC--CCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          487 YT--DSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       487 ~~--~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      ..  .++..|.+||.+..+++++|||+. .|+|.-|+.+++..+|...+++..++++-. +++++..+.|
T Consensus       249 i~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g  317 (368)
T COG1223         249 IKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG  317 (368)
T ss_pred             cccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence            43  446678889999999999999995 799999999999999999999988777644 7888888765

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=99.80  E-value=8.2e-19  Score=196.39  Aligned_cols=222  Identities=15%  Similarity=0.219  Sum_probs=137.4

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcC---C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDG---N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g---~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      ....+|++||+|++++||+.|+..++.++.||+..   .  ...+||+||+||||||++++||+++ +..+.+.  .+.+
T Consensus         4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-g~~v~Ew--~np~   80 (519)
T PF03215_consen    4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-GFEVQEW--INPV   80 (519)
T ss_pred             cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-CCeeEEe--cCCC
Confidence            34678999999999999999999999999999742   2  2357899999999999999999997 5543111  0001


Q ss_pred             cccccCCcceEEEecccchhhH-HHHHHHHHHH-HH--HhccC------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742          418 LVPVASSAHHVELNVNLQANAK-YALMGLVKEI-RD--NLAIT------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY  487 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k-~~l~~~lrei-~~--~~~~~------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~  487 (629)
                      .+..... ...+.......... .--.+.+.++ ..  .+...      .....+||+|||+..+.......|+.++..+
T Consensus        81 ~~~~~~~-~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~  159 (519)
T PF03215_consen   81 SFRESDN-QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY  159 (519)
T ss_pred             Ccccccc-ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence            0000000 00000000000000 0001122222 10  11000      1123569999999987433224444444422


Q ss_pred             --CCCc-EEEEEecCC---------c--------cchHHHhh--cceEeeccCCCHHHHHHHHHHHHHhc-----C-CCC
Q 036742          488 --TDSC-KLILCCEDD---------V--------DIIESVKT--HCKVIKVDPPVTHEIMEVLIQIARKE-----D-FDL  539 (629)
Q Consensus       488 --~~~~-~~ILitN~~---------~--------~I~~aLrS--R~~~I~F~ppt~eei~~iL~~i~~ke-----g-l~i  539 (629)
                        ...+ ++|++..+.         .        .+.+.|..  ++..|.|+|.++.-|.+.|.+|+..|     + ...
T Consensus       160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~  239 (519)
T PF03215_consen  160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV  239 (519)
T ss_pred             HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence              2334 666544311         0        13455655  45789999999999999999999988     2 233


Q ss_pred             C--HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          540 S--MTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       540 s--~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      +  .++++.|++.+.||||.||+.||+++..
T Consensus       240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~  270 (519)
T PF03215_consen  240 PDKQSVLDSIAESSNGDIRSAINNLQFWCLK  270 (519)
T ss_pred             CChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence            3  4569999999999999999999998874

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.79  E-value=1.8e-18  Score=183.09  Aligned_cols=190  Identities=13%  Similarity=0.134  Sum_probs=150.7

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCCcceEEEeccc-chh
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASSAHHVELNVNL-QAN  437 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS~~vleInas~-~~~  437 (629)
                      +....+.|+..+..++.+| +||+||.|+||+++|+++|+.+.|.......+..|.+|.   ...+..+..+.+.. +..
T Consensus         8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~   87 (319)
T PRK06090          8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS   87 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence            5677889999999999987 779999999999999999999988753223344454444   33556676776642 222


Q ss_pred             hHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742          438 AKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV  516 (629)
Q Consensus       438 ~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F  516 (629)
                         +-++.++++........ .+..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|
T Consensus        88 ---I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~  164 (319)
T PRK06090         88 ---ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV  164 (319)
T ss_pred             ---CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence               23466677666554443 35568999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      .+|+.+++.++|..    .++.    ....++..++|++..|+.+++
T Consensus       165 ~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~  203 (319)
T PRK06090        165 TPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK  203 (319)
T ss_pred             CCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence            99999999999863    3443    234678889999998888774

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.79  E-value=6.3e-18  Score=171.99  Aligned_cols=183  Identities=14%  Similarity=0.199  Sum_probs=136.2

Q ss_pred             CCCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          355 SSLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       355 ~tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .+|++++  ++..++..++.+......++++||||+|||||+|++++++++...+.                 .+++++.
T Consensus        19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-----------------~v~y~~~   81 (235)
T PRK08084         19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGR-----------------AVGYVPL   81 (235)
T ss_pred             CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------eEEEEEH
Confidence            3688887  47889999999987666678999999999999999999998743221                 2455554


Q ss_pred             ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc--CCCcEEEEEecCCcc----ch
Q 036742          433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY--TDSCKLILCCEDDVD----II  504 (629)
Q Consensus       433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~--~~~~~~ILitN~~~~----I~  504 (629)
                      .....       ...++.+.+..     ..+|||||++.+..  ..+..|..+++..  ..++.+|++++.+..    +.
T Consensus        82 ~~~~~-------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~  149 (235)
T PRK08084         82 DKRAW-------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL  149 (235)
T ss_pred             HHHhh-------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence            32111       11112222111     14899999999843  3344444444322  234578888876533    57


Q ss_pred             HHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          505 ESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       505 ~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      +.|+|||   .++.+.+|+.+++.++|++.+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus       150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999   8999999999999999999898889999999999999999999999999999864

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=4.4e-18  Score=189.21  Aligned_cols=189  Identities=19%  Similarity=0.167  Sum_probs=135.4

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      ....+|+||.|+++++..|++.+.           -  ....+||||||||||||++|+++|++....            
T Consensus       428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n------------  495 (693)
T KOG0730|consen  428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN------------  495 (693)
T ss_pred             CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC------------
Confidence            445678999999999999998885           1  234589999999999999999999997433            


Q ss_pred             ccccCCcceEEEec----ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH
Q 036742          419 VPVASSAHHVELNV----NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI  483 (629)
Q Consensus       419 ~~i~sS~~vleIna----s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri  483 (629)
                              ++.+..    +.+.|.      .-+.+...|..+.....+|||+||||.+..           ...+.|+.-
T Consensus       496 --------FlsvkgpEL~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtE  561 (693)
T KOG0730|consen  496 --------FLSVKGPELFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTE  561 (693)
T ss_pred             --------eeeccCHHHHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHH
Confidence                    233322    122222      122333344444445568999999999932           356677777


Q ss_pred             HhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccCC-HH
Q 036742          484 MDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQN-LR  556 (629)
Q Consensus       484 lEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~GD-iR  556 (629)
                      |+...  .++.||.+||+++.|+++|.+  |+ ..|+++.|+.+...+||+..+++  ++++++ .+..|++.+.|- -.
T Consensus       562 mDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGA  639 (693)
T KOG0730|consen  562 MDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGA  639 (693)
T ss_pred             cccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChH
Confidence            77443  566788899999999999999  77 57888999999999999988776  455555 588899887653 24


Q ss_pred             HHHHHHHHHHhc
Q 036742          557 KAIMALEACKAL  568 (629)
Q Consensus       557 ~AInlLq~~~~~  568 (629)
                      .+.+++|.++..
T Consensus       640 el~~lCq~A~~~  651 (693)
T KOG0730|consen  640 EIVAVCQEAALL  651 (693)
T ss_pred             HHHHHHHHHHHH
Confidence            455566655443

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.77  E-value=1e-17  Score=182.82  Aligned_cols=221  Identities=15%  Similarity=0.184  Sum_probs=140.9

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT  415 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~  415 (629)
                      ...++|++||+|.+++|+..|+..+..+++|++     ....+  .+||+||+||||||+++.+++++ |..+.+.  .+
T Consensus        67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-g~~~~Ew--~N  143 (634)
T KOG1970|consen   67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-GYQLIEW--SN  143 (634)
T ss_pred             cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-Cceeeee--cC
Confidence            345789999999999999999999999999998     44444  58899999999999999999997 6654211  11


Q ss_pred             cccccccCCcceEEEecccchhhH-HHHHHHHHHHHH---------HhccCcCCCCeEEEEEccchhhHH-HHHHHHHHH
Q 036742          416 QVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRD---------NLAITPEVSNAMIVIYEVDKAAEH-IQYLIKWIM  484 (629)
Q Consensus       416 ~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~---------~~~~~~~~~~kVIIIDEID~Ls~~-~q~aLlril  484 (629)
                      .+.+...+.-+-    .....+.. .-....++.+..         .........+++|+|||+....-. ....|+.++
T Consensus       144 pi~~~~~~~~h~----~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL  219 (634)
T KOG1970|consen  144 PINLKEPENLHN----ETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL  219 (634)
T ss_pred             Cccccccccccc----cchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence            110000000000    00000100 000111111111         111112234569999999887432 444444444


Q ss_pred             hccC--CCcEEE-EEecCCc-------c-chHH--HhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCC------HHHHH
Q 036742          485 DGYT--DSCKLI-LCCEDDV-------D-IIES--VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS------MTFAA  545 (629)
Q Consensus       485 Ee~~--~~~~~I-LitN~~~-------~-I~~a--LrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is------~e~L~  545 (629)
                      ..|.  ..+++| ++|+...       . ....  ..-|...|.|+|..+.-|.+.|.+||..+...+.      ...++
T Consensus       220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~  299 (634)
T KOG1970|consen  220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE  299 (634)
T ss_pred             HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence            4332  333433 3443211       1 2233  3446678999999999999999999999887776      67789


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCC
Q 036742          546 KIATKAKQNLRKAIMALEACKALNY  570 (629)
Q Consensus       546 ~Ia~~s~GDiR~AInlLq~~~~~~~  570 (629)
                      .|+..++||||.||+.||+....+.
T Consensus       300 ~i~~~s~GDIRsAInsLQlssskg~  324 (634)
T KOG1970|consen  300 LICQGSGGDIRSAINSLQLSSSKGE  324 (634)
T ss_pred             HHHHhcCccHHHHHhHhhhhcccCc
Confidence            9999999999999999999865544

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.76  E-value=1.2e-16  Score=166.62  Aligned_cols=170  Identities=15%  Similarity=0.108  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHH
Q 036742          366 EAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG  444 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~  444 (629)
                      ..+.|...+..|+.+| +||+||.|+||+++|.++|+.+.|....    ..|..+....++.+..+.+.....  .+-.+
T Consensus         5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~----~~c~~~~~~~HPD~~~i~p~~~~~--~I~id   78 (290)
T PRK05917          5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP----EAAYKISQKIHPDIHEFSPQGKGR--LHSIE   78 (290)
T ss_pred             HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc----cHHHHHhcCCCCCEEEEecCCCCC--cCcHH
Confidence            4578999999999997 5599999999999999999999886421    123233334456666665532210  12246


Q ss_pred             HHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHH
Q 036742          445 LVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE  523 (629)
Q Consensus       445 ~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~ee  523 (629)
                      .++++.+.+...+. +..+|+|||++|.|+.+++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|.++..  
T Consensus        79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~--  156 (290)
T PRK05917         79 TPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEK--  156 (290)
T ss_pred             HHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhc--
Confidence            67777777666553 567899999999999999999999999999999999999999999999999999999987621  


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742          524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR  556 (629)
Q Consensus       524 i~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR  556 (629)
                                   ..++++.+..++..+.|+++
T Consensus       157 -------------~~i~~~~~~~l~~~~~g~~~  176 (290)
T PRK05917        157 -------------TLVSKEDIAYLIGYAQGKES  176 (290)
T ss_pred             -------------cCCCHHHHHHHHHHhCCChh
Confidence                         23566666666666777663

>CHL00181 cbbX CbbX; Provisional

Probab=99.76  E-value=3.6e-17  Score=171.31  Aligned_cols=192  Identities=13%  Similarity=0.164  Sum_probs=137.3

Q ss_pred             CcccccHHHHHHHHHHHH----------cC-----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          358 NGFICHRHEAQLLKELVV----------DG-----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----------~g-----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ++++|.+++++.|.+++.          .|     ...|+||+||||||||++|+++|+.+.....             .
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~-------------~   89 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY-------------I   89 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC-------------C
Confidence            589999999998877752          11     2337999999999999999999998754332             2


Q ss_pred             CCcceEEEecccchhhHH-HHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742          423 SSAHHVELNVNLQANAKY-ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK  492 (629)
Q Consensus       423 sS~~vleInas~~~~~k~-~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~  492 (629)
                      ..+.+++++..+..+... ......+.+...      ..+.||||||+|.+         ..++++.|+..|+.....+.
T Consensus        90 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~  163 (287)
T CHL00181         90 KKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV  163 (287)
T ss_pred             CCCceEEecHHHHHHHHhccchHHHHHHHHH------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence            233466766532111000 000111222221      12469999999987         56788899999998777777


Q ss_pred             EEEEecCCc-----cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------ccCCHHHH
Q 036742          493 LILCCEDDV-----DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK--------AKQNLRKA  558 (629)
Q Consensus       493 ~ILitN~~~-----~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~--------s~GDiR~A  558 (629)
                      ||++++...     .+.++|++||. .|.|++|+.+++.+++...+.+.++.++++....+...        ..||.|.+
T Consensus       164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~v  243 (287)
T CHL00181        164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSV  243 (287)
T ss_pred             EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHH
Confidence            777775321     13589999995 79999999999999999999999999998877666654        23889999


Q ss_pred             HHHHHHHHhc
Q 036742          559 IMALEACKAL  568 (629)
Q Consensus       559 InlLq~~~~~  568 (629)
                      .++++.+...
T Consensus       244 rn~ve~~~~~  253 (287)
T CHL00181        244 RNALDRARMR  253 (287)
T ss_pred             HHHHHHHHHH
Confidence            9999876543

>PRK08727 hypothetical protein; Validated

Probab=99.76  E-value=5.3e-17  Score=164.98  Aligned_cols=183  Identities=15%  Similarity=0.215  Sum_probs=133.3

Q ss_pred             CCCCcccccH-HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          355 SSLNGFICHR-HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       355 ~tfddIiG~e-~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+|+++++.+ ..+..+..+........++|+||+|||||+|+++++.++...+.                 .+++++..
T Consensus        16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~-----------------~~~y~~~~   78 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR-----------------SSAYLPLQ   78 (233)
T ss_pred             CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------cEEEEeHH
Confidence            4788887544 45555555544333456999999999999999999998743321                 14555542


Q ss_pred             cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhc-cCCCcEEEEEecCCcc----chHH
Q 036742          434 LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDG-YTDSCKLILCCEDDVD----IIES  506 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe-~~~~~~~ILitN~~~~----I~~a  506 (629)
                      ...       ..+......+.     ...+|||||+|.+.  ...+..|..+++. +.....+|+++|....    ++++
T Consensus        79 ~~~-------~~~~~~~~~l~-----~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d  146 (233)
T PRK08727         79 AAA-------GRLRDALEALE-----GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD  146 (233)
T ss_pred             Hhh-------hhHHHHHHHHh-----cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence            211       11122222221     12389999999984  3445566666653 3345679999986543    5799


Q ss_pred             Hhhc---ceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          507 VKTH---CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       507 LrSR---~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      |+||   |.++.|.+|+.+++..+|+++|..+++.++++++++|++.+.||+|.++++|+.+.
T Consensus       147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999   78999999999999999999999999999999999999999999999999998764

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.76  E-value=4.1e-17  Score=174.31  Aligned_cols=190  Identities=14%  Similarity=0.168  Sum_probs=142.0

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC--CCCCCcccccc---ccCCcceEEEeccc--
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW--NEKWPTQVLVP---VASSAHHVELNVNL--  434 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~--~~~~~~~v~~~---i~sS~~vleInas~--  434 (629)
                      +....+.|...  .++.+| +||+||+|+||+++|+++|+.+.|....  ...|..|..|.   ...+..+..+.+..  
T Consensus         6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~   83 (342)
T PRK06964          6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA   83 (342)
T ss_pred             cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence            44555666664  557775 6799999999999999999999886421  12334444443   33455565554321  


Q ss_pred             ----------------chhh------HHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742          435 ----------------QANA------KYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       435 ----------------~~~~------k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~  491 (629)
                                      ..+.      ..+..+.++++......... +..+|+|||++|.|+..+.|+|++++|+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t  163 (342)
T PRK06964         84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGT  163 (342)
T ss_pred             ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCc
Confidence                            0110      12446778888777666543 567899999999999999999999999999999


Q ss_pred             EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      .|||+|+.++.|+++|+|||+.+.|.+++.+++.++|...    ++  ++  ...++..++|.+..|+.++
T Consensus       164 ~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~Al~~~  226 (342)
T PRK06964        164 VFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLAALALA  226 (342)
T ss_pred             EEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999753    33  32  2345777889888887765

>PRK06893 DNA replication initiation factor; Validated

Probab=99.76  E-value=3.4e-17  Score=165.94  Aligned_cols=185  Identities=14%  Similarity=0.205  Sum_probs=128.8

Q ss_pred             CCCCCCcccccHHHH--HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          353 QPSSLNGFICHRHEA--QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       353 rP~tfddIiG~e~~~--~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      .+.+|+++++.+...  ..+.........|.++||||||||||+|++++|+++.....                 .+.++
T Consensus        11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-----------------~~~y~   73 (229)
T PRK06893         11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-----------------TAIYI   73 (229)
T ss_pred             CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------CeEEe
Confidence            467899999765532  22333333334467899999999999999999999743221                 13444


Q ss_pred             ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhccC-CCcE-EEEEecCCcc----
Q 036742          431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDGYT-DSCK-LILCCEDDVD----  502 (629)
Q Consensus       431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe~~-~~~~-~ILitN~~~~----  502 (629)
                      .......       ...++...+.     ...+|||||++.+.  ...+..|..+++... .+.. +|++++....    
T Consensus        74 ~~~~~~~-------~~~~~~~~~~-----~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~  141 (229)
T PRK06893         74 PLSKSQY-------FSPAVLENLE-----QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI  141 (229)
T ss_pred             eHHHhhh-------hhHHHHhhcc-----cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence            4421100       1111222221     23599999999984  333445666665332 2333 4566665433    


Q ss_pred             chHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          503 IIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       503 I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      +++.|++|+.   ++.+.+|+.+++.++|++.+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus       142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  208 (229)
T PRK06893        142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD  208 (229)
T ss_pred             cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4589999985   899999999999999999999999999999999999999999999999998764

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.74  E-value=1.8e-16  Score=170.02  Aligned_cols=228  Identities=17%  Similarity=0.186  Sum_probs=146.3

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      +...|.|   ++++|++..++.|..++.    .+..++++|+||||||||++++++++++..... ..          ..
T Consensus         8 l~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~-~~----------~~   73 (365)
T TIGR02928         8 LEPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE-DR----------DV   73 (365)
T ss_pred             CCCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh-cc----------CC
Confidence            3467888   588999998888888875    344568999999999999999999998742210 00          00


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHH-----------------H-hc-cCcCCCCeEEEEEccchhhHH---HHHHHH
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRD-----------------N-LA-ITPEVSNAMIVIYEVDKAAEH---IQYLIK  481 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~-----------------~-~~-~~~~~~~kVIIIDEID~Ls~~---~q~aLl  481 (629)
                      ...++++++........++..++..+..                 . +. ........||||||+|.+...   ....|.
T Consensus        74 ~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~  153 (365)
T TIGR02928        74 RVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLS  153 (365)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHh
Confidence            0236788875443333333333333311                 0 00 001122349999999999532   333444


Q ss_pred             HH--HhccC-CCcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH--
Q 036742          482 WI--MDGYT-DSCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIAT--  549 (629)
Q Consensus       482 ri--lEe~~-~~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~--  549 (629)
                      ++  ..... ..+.+|+++|.+.   .+.+.+.+|+  ..+.|++|+.+++.++|...+..  ....++++++..++.  
T Consensus       154 ~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~  233 (365)
T TIGR02928       154 RARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALA  233 (365)
T ss_pred             ccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHH
Confidence            44  12222 4567889999875   4778888888  47999999999999999998763  223477887766554  


Q ss_pred             -HccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          550 -KAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       550 -~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                       .+.||+|.++++|..+...+...........++++++..+
T Consensus       234 ~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~  274 (365)
T TIGR02928       234 AQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI  274 (365)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence             4579999999999876544332222334445555544443

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.73  E-value=1.4e-16  Score=182.39  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=139.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH----cCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..|.|   +.|.|.++.++.|..+|.    .....+ ++|+|+||||||++++.++++|....-          -.....
T Consensus       750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeae----------qk~lp~  816 (1164)
T PTZ00112        750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTK----------QKLLPS  816 (1164)
T ss_pred             cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHh----------hccCCC
Confidence            56778   788899988777776664    223334 569999999999999999988742110          000111


Q ss_pred             cceEEEecccchhhHHHHHHHHHHH--------------H-HHhccC--cCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEI--------------R-DNLAIT--PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY  487 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei--------------~-~~~~~~--~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~  487 (629)
                      ..+++|||........+...+.+.+              . ..|...  ......||||||||.|....+.+|+.+++.+
T Consensus       817 f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~  896 (1164)
T PTZ00112        817 FNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP  896 (1164)
T ss_pred             ceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh
Confidence            2378899843222111111111111              1 111111  1111239999999999776777787777643


Q ss_pred             C---CCcEEEEEecCC---ccchHHHhhcce--EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HccCCHH
Q 036742          488 T---DSCKLILCCEDD---VDIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT---KAKQNLR  556 (629)
Q Consensus       488 ~---~~~~~ILitN~~---~~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~---~s~GDiR  556 (629)
                      .   ..+.||+++|..   ..+++.+++||.  .+.|.||+.+++.+||...+......++++++..+|+   ...||+|
T Consensus       897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR  976 (1164)
T PTZ00112        897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR  976 (1164)
T ss_pred             hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence            2   334567778763   457889999985  4899999999999999999876544689999999988   6789999


Q ss_pred             HHHHHHHHHHhc
Q 036742          557 KAIMALEACKAL  568 (629)
Q Consensus       557 ~AInlLq~~~~~  568 (629)
                      +||++|..+...
T Consensus       977 KALDILRrAgEi  988 (1164)
T PTZ00112        977 KALQICRKAFEN  988 (1164)
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=5.1e-17  Score=178.69  Aligned_cols=184  Identities=19%  Similarity=0.198  Sum_probs=134.9

Q ss_pred             CCCCcccccHHHHHHHHHHHH----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVV----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+|.||.|.+..+..|.+++-          .|-  ..++|||||||||||.||++||+++ +-.               
T Consensus       187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vP---------------  250 (802)
T KOG0733|consen  187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVP---------------  250 (802)
T ss_pred             cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCc---------------
Confidence            469999999999999998884          232  2379999999999999999999997 443               


Q ss_pred             CCcceEEEec-ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccC--
Q 036742          423 SSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYT--  488 (629)
Q Consensus       423 sS~~vleIna-s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~--  488 (629)
                          ++.|++ ....|.....++.++++...   +....++|+||||||.+.+           .....|+..|++..  
T Consensus       251 ----f~~isApeivSGvSGESEkkiRelF~~---A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~  323 (802)
T KOG0733|consen  251 ----FLSISAPEIVSGVSGESEKKIRELFDQ---AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE  323 (802)
T ss_pred             ----eEeecchhhhcccCcccHHHHHHHHHH---HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence                466666 22233332334555555443   3344568999999999954           23345666676543  


Q ss_pred             ----CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742          489 ----DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA  561 (629)
Q Consensus       489 ----~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInl  561 (629)
                          ..+.||.+||+++.|+++||+  || ..|.+.-|+..+..+||..+|+...+.- +-.+..||.++.|.+.--+..
T Consensus       324 ~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~A  402 (802)
T KOG0733|consen  324 KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMA  402 (802)
T ss_pred             ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHH
Confidence                345678889999999999998  45 4688899999999999999998755542 334788999998877655555


Q ss_pred             H
Q 036742          562 L  562 (629)
Q Consensus       562 L  562 (629)
                      |
T Consensus       403 L  403 (802)
T KOG0733|consen  403 L  403 (802)
T ss_pred             H
Confidence            4

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.73  E-value=1.8e-16  Score=159.52  Aligned_cols=182  Identities=15%  Similarity=0.214  Sum_probs=137.7

Q ss_pred             CCCCCCccc--ccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          353 QPSSLNGFI--CHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       353 rP~tfddIi--G~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      +|.+|++++  ++..++..++.|... ...++++|+||+|||||++|+++++++.....                 .+++
T Consensus        13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-----------------~~~~   75 (227)
T PRK08903         13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR-----------------NARY   75 (227)
T ss_pred             ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEE
Confidence            467899987  457788889988873 23457999999999999999999998743321                 2556


Q ss_pred             EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCC-c-EEEEEecCCc---cch
Q 036742          430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDS-C-KLILCCEDDV---DII  504 (629)
Q Consensus       430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~-~-~~ILitN~~~---~I~  504 (629)
                      +++.....       .+    . +    .....+|||||+|.+....+..|..+++..... . .+|++++...   .+.
T Consensus        76 i~~~~~~~-------~~----~-~----~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~  139 (227)
T PRK08903         76 LDAASPLL-------AF----D-F----DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR  139 (227)
T ss_pred             EehHHhHH-------HH----h-h----cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence            66532111       00    0 0    112459999999999888888888888754333 3 3555555432   256


Q ss_pred             HHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          505 ESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       505 ~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      +.|++|+   ..+.+++|+.++...+|..++.+.++.+++++++.|++.+.||+|.+.++|+.+..
T Consensus       140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~  205 (227)
T PRK08903        140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDR  205 (227)
T ss_pred             HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            8888886   78999999999999999999999999999999999999999999999999987643

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.73  E-value=1.6e-16  Score=178.17  Aligned_cols=188  Identities=15%  Similarity=0.149  Sum_probs=125.5

Q ss_pred             hhccCCCCCCcccccHHHHHHHHHHHH-----------cCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          349 ADKHQPSSLNGFICHRHEAQLLKELVV-----------DGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      .+.....+|+||+|++++++.|++++.           ... ..++||+||||||||++|+++|.++. ..         
T Consensus        46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-~~---------  115 (495)
T TIGR01241        46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-VP---------  115 (495)
T ss_pred             cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-CC---------
Confidence            344556789999999999988887764           122 34799999999999999999999863 22         


Q ss_pred             ccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHH
Q 036742          417 VLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIK  481 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLl  481 (629)
                                ++.++++...... ......++.+..   ......++||||||+|.+..              ...+.|+
T Consensus       116 ----------~~~i~~~~~~~~~~g~~~~~l~~~f~---~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL  182 (495)
T TIGR01241       116 ----------FFSISGSDFVEMFVGVGASRVRDLFE---QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL  182 (495)
T ss_pred             ----------eeeccHHHHHHHHhcccHHHHHHHHH---HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH
Confidence                      3444443211100 000112222222   22223457999999999842              2334455


Q ss_pred             HHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC---
Q 036742          482 WIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ---  553 (629)
Q Consensus       482 rilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G---  553 (629)
                      ..|+.+.  ..+.||++||.++.|+++|++  |+ ..+.|+.|+.++..++|+..+....+. ++..+..|+..+.|   
T Consensus       183 ~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sg  261 (495)
T TIGR01241       183 VEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSG  261 (495)
T ss_pred             hhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCH
Confidence            5555443  346788889999999999997  55 479999999999999999887765443 34457788888765   


Q ss_pred             -CHHHHHH
Q 036742          554 -NLRKAIM  560 (629)
Q Consensus       554 -DiR~AIn  560 (629)
                       |++.+++
T Consensus       262 adl~~l~~  269 (495)
T TIGR01241       262 ADLANLLN  269 (495)
T ss_pred             HHHHHHHH
Confidence             4554444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.73  E-value=2.4e-16  Score=174.74  Aligned_cols=235  Identities=17%  Similarity=0.166  Sum_probs=153.3

Q ss_pred             CCCccc-c--cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          356 SLNGFI-C--HRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       356 tfddIi-G--~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +|++++ |  +..+...++.+....  ..+.++||||+|||||+|++++++++.....               ...++++
T Consensus       120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------------~~~v~yi  184 (450)
T PRK00149        120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNP---------------NAKVVYV  184 (450)
T ss_pred             cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCC---------------CCeEEEE
Confidence            677765 3  455677777777642  3457999999999999999999999853210               1226777


Q ss_pred             ecccchhh-HHHHH-HHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc---
Q 036742          431 NVNLQANA-KYALM-GLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD---  502 (629)
Q Consensus       431 nas~~~~~-k~~l~-~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~---  502 (629)
                      ++...... ...+. ....++...+.     ...||||||+|.+..  ..+..|..+++. +..+..+|++++.+..   
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~  259 (450)
T PRK00149        185 TSEKFTNDFVNALRNNTMEEFKEKYR-----SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP  259 (450)
T ss_pred             EHHHHHHHHHHHHHcCcHHHHHHHHh-----cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence            76432110 00000 01111222211     234999999999843  345555555542 2344568888877542   


Q ss_pred             -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                       +.+.|++|+   .++.|.+|+.+++..+|+..+...++.++++++++|++.+.||+|.++.+|..+....... ....+
T Consensus       260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~-~~~it  338 (450)
T PRK00149        260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLT-GKPIT  338 (450)
T ss_pred             HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhh-CCCCC
Confidence             678899999   5899999999999999999999999999999999999999999999888877654332211 11122


Q ss_pred             chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742          579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQK  611 (629)
Q Consensus       579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~  611 (629)
                      ...+++++.++....-..-+++.|...+++.|.
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~  371 (450)
T PRK00149        339 LELAKEALKDLLAAQKKKITIENIQKVVAEYYN  371 (450)
T ss_pred             HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHcC
Confidence            233444444443211123478888888887775

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.72  E-value=3.4e-16  Score=183.05  Aligned_cols=207  Identities=16%  Similarity=0.166  Sum_probs=152.8

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ..++++.+|.++++++|+++.++.+.+.|..+..+++||+||||||||++|+++|+.+......          ......
T Consensus       170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p----------~~l~~~  239 (731)
T TIGR02639       170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVP----------ENLKNA  239 (731)
T ss_pred             hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCc----------hhhcCC
Confidence            3467899999999999999999999999988888899999999999999999999997432210          011123


Q ss_pred             ceEEEecccc-hhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCcEE
Q 036742          426 HHVELNVNLQ-ANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       426 ~vleInas~~-~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~~~  493 (629)
                      .++.++.... .+.  ....++.++.+......   ..+.||||||+|.+.         .++++.|+..++.  ....+
T Consensus       240 ~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~  314 (731)
T TIGR02639       240 KIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRC  314 (731)
T ss_pred             eEEEecHHHHhhhccccchHHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEE
Confidence            3566664211 011  11223445555443322   235699999999994         2457778887763  56778


Q ss_pred             EEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHH
Q 036742          494 ILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKA  558 (629)
Q Consensus       494 ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~A  558 (629)
                      |.+||..+     .++++|.+||..|.|.+|+.+++.++|+.+..+    .++.++++++..++..+...      .++|
T Consensus       315 IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka  394 (731)
T TIGR02639       315 IGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA  394 (731)
T ss_pred             EEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence            88888632     368999999999999999999999999977653    45788999999999988653      5789


Q ss_pred             HHHHHHHHh
Q 036742          559 IMALEACKA  567 (629)
Q Consensus       559 InlLq~~~~  567 (629)
                      |.+|+.++.
T Consensus       395 i~lld~a~a  403 (731)
T TIGR02639       395 IDVIDEAGA  403 (731)
T ss_pred             HHHHHHhhh
Confidence            999987554

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.72  E-value=5.3e-16  Score=171.85  Aligned_cols=254  Identities=12%  Similarity=0.159  Sum_probs=165.8

Q ss_pred             CCCCCccc-c--cHHHHHHHHHHHHc-C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          354 PSSLNGFI-C--HRHEAQLLKELVVD-G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       354 P~tfddIi-G--~e~~~~~Lk~~L~~-g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      +.+|+.++ |  +..+....+.+... | ..+.++|||++|||||+|++++++++.....               ...++
T Consensus       111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~---------------~~~v~  175 (450)
T PRK14087        111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFS---------------DLKVS  175 (450)
T ss_pred             ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCC---------------CCeEE
Confidence            35788876 3  33356666666653 2 2457999999999999999999998742110               11266


Q ss_pred             EEecccchh-hHHHHH---HHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhc-cCCCcEEEEEecCCc
Q 036742          429 ELNVNLQAN-AKYALM---GLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDG-YTDSCKLILCCEDDV  501 (629)
Q Consensus       429 eInas~~~~-~k~~l~---~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe-~~~~~~~ILitN~~~  501 (629)
                      ++++.+... ....+.   +.+.++...+.     ...||||||++.+.  ...++.|..+++. +..+..+|++++.+.
T Consensus       176 yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~-----~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P  250 (450)
T PRK14087        176 YMSGDEFARKAVDILQKTHKEIEQFKNEIC-----QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP  250 (450)
T ss_pred             EEEHHHHHHHHHHHHHHhhhHHHHHHHHhc-----cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence            776632111 000000   11111222221     22499999999985  5567777777764 334557899988765


Q ss_pred             c----chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742          502 D----IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF  572 (629)
Q Consensus       502 ~----I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl--~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~  572 (629)
                      .    +.+.|++|+   .++.+.+|+.+++.++|++.+...|+  .++++++.+|++.+.||+|.++++|..+...+...
T Consensus       251 ~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~  330 (450)
T PRK14087        251 ELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQN  330 (450)
T ss_pred             HHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc
Confidence            3    568999998   58999999999999999999988775  69999999999999999999999998775443322


Q ss_pred             CCCCCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----HHHcC-----CCHHHHHHHHh
Q 036742          573 ADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQK-----LLAEF-----VHPKLILLVMH  627 (629)
Q Consensus       573 ~~~~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~-----lL~~~-----i~~~~i~~~La  627 (629)
                      ..+.++. ..+++++.++...--..-+++.|.+++++.|.     +.+..     +.|..|...|+
T Consensus       331 ~~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~  396 (450)
T PRK14087        331 PEEKIITIEIVSDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLT  396 (450)
T ss_pred             cCCCCCCHHHHHHHHhhccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHH
Confidence            1122222 33444554442111112488899999888776     33322     34566666554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.72  E-value=2.3e-16  Score=165.01  Aligned_cols=192  Identities=14%  Similarity=0.143  Sum_probs=137.8

Q ss_pred             CcccccHHHHHHHHHHHH----------cCC-----CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          358 NGFICHRHEAQLLKELVV----------DGN-----CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----------~g~-----~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ++++|.+++++.|.+++.          .|.     ..++||+||||||||++|+++|+.+.....             .
T Consensus        22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~-------------~   88 (284)
T TIGR02880        22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY-------------V   88 (284)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------c
Confidence            468999999988877652          121     227999999999999999999999854332             1


Q ss_pred             CCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742          423 SSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK  492 (629)
Q Consensus       423 sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~  492 (629)
                      ..+.++++++.+..+.. ......++++...      ..+.||||||++.|         ..++++.|+..|+.....+.
T Consensus        89 ~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~  162 (284)
T TIGR02880        89 RKGHLVSVTRDDLVGQYIGHTAPKTKEILKR------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV  162 (284)
T ss_pred             ccceEEEecHHHHhHhhcccchHHHHHHHHH------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence            22235666653211100 0000112222221      12369999999977         45678899999998777777


Q ss_pred             EEEEecCC--cc---chHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------ccCCHHHH
Q 036742          493 LILCCEDD--VD---IIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK--------AKQNLRKA  558 (629)
Q Consensus       493 ~ILitN~~--~~---I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~--------s~GDiR~A  558 (629)
                      +|++++..  +.   +.++|++|| ..|.|++|+.+++..++...+.+.+..++++.+..+...        ..||+|.+
T Consensus       163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~l  242 (284)
T TIGR02880       163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSI  242 (284)
T ss_pred             EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence            77776542  22   468999999 579999999999999999999998889999988888775        35999999


Q ss_pred             HHHHHHHHhc
Q 036742          559 IMALEACKAL  568 (629)
Q Consensus       559 InlLq~~~~~  568 (629)
                      .|.++.+...
T Consensus       243 rn~ve~~~~~  252 (284)
T TIGR02880       243 RNAIDRARLR  252 (284)
T ss_pred             HHHHHHHHHH
Confidence            9999886543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.72  E-value=4.1e-16  Score=178.75  Aligned_cols=211  Identities=17%  Similarity=0.218  Sum_probs=148.4

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      +..+..+.|||.+|++++|+..++..+...+......+++|+|||||||||+|+++++.......          .+...
T Consensus       140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~----------~~~~~  209 (615)
T TIGR02903       140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKH----------TPFAE  209 (615)
T ss_pred             hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC----------CcccC
Confidence            34456689999999999999999888888887666678999999999999999999887532111          00001


Q ss_pred             CcceEEEecccch-hhHHHHHH-----------HHHHHHHHhcc-------CcCCCCeEEEEEccchhhHHHHHHHHHHH
Q 036742          424 SAHHVELNVNLQA-NAKYALMG-----------LVKEIRDNLAI-------TPEVSNAMIVIYEVDKAAEHIQYLIKWIM  484 (629)
Q Consensus       424 S~~vleInas~~~-~~k~~l~~-----------~lrei~~~~~~-------~~~~~~kVIIIDEID~Ls~~~q~aLlril  484 (629)
                      ...++.+++.... ....+...           ..+........       .....+.||||||++.|....+..|++++
T Consensus       210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L  289 (615)
T TIGR02903       210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL  289 (615)
T ss_pred             CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH
Confidence            1235566553211 00000000           01111111111       11223459999999999999999999999


Q ss_pred             hccC--------------------------CCcEEEEE---ecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc
Q 036742          485 DGYT--------------------------DSCKLILC---CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE  535 (629)
Q Consensus       485 Ee~~--------------------------~~~~~ILi---tN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke  535 (629)
                      +...                          ....++++   ++.+..+.++|++||..+.|.+++.+++..++.+++.+.
T Consensus       290 e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~  369 (615)
T TIGR02903       290 EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI  369 (615)
T ss_pred             hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc
Confidence            7521                          11234443   345667899999999999999999999999999999988


Q ss_pred             CCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          536 DFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       536 gl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                      ++.+++++++.|++.+. +.|+++++|+.+
T Consensus       370 ~v~ls~eal~~L~~ys~-~gRraln~L~~~  398 (615)
T TIGR02903       370 NVHLAAGVEELIARYTI-EGRKAVNILADV  398 (615)
T ss_pred             CCCCCHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            88899999988888765 789999999765

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.72  E-value=4.1e-16  Score=155.98  Aligned_cols=185  Identities=16%  Similarity=0.220  Sum_probs=137.8

Q ss_pred             CCCCCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          353 QPSSLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       353 rP~tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      .+.+|++++  +++.+++.+++++......+++|+||+|||||++|+++++++.....                 .++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~-----------------~~~~i   72 (226)
T TIGR03420        10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK-----------------SAIYL   72 (226)
T ss_pred             CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------------cEEEE
Confidence            345788887  36779999999987766778999999999999999999998743221                 25666


Q ss_pred             ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc-CCCcEEEEEecCCc-c--c-
Q 036742          431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY-TDSCKLILCCEDDV-D--I-  503 (629)
Q Consensus       431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~-~~~~~~ILitN~~~-~--I-  503 (629)
                      ++......       ..++...+     ....+|||||+|.+..  +.+..|..+++.. .....+|++++... .  + 
T Consensus        73 ~~~~~~~~-------~~~~~~~~-----~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~  140 (226)
T TIGR03420        73 PLAELAQA-------DPEVLEGL-----EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR  140 (226)
T ss_pred             eHHHHHHh-------HHHHHhhc-----ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence            66422111       01111111     1224999999999975  3367777776642 23357888877543 2  2 


Q ss_pred             hHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          504 IESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       504 ~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      .+.|.+|+   ..+.+++++.+++..+|...+.+.++.++++++..|++.+.||+|.+.+.|+.+.
T Consensus       141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~  206 (226)
T TIGR03420       141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD  206 (226)
T ss_pred             cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            37888886   5899999999999999999988889999999999999999999999999998754

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.72  E-value=7.3e-16  Score=161.14  Aligned_cols=187  Identities=11%  Similarity=0.110  Sum_probs=141.8

Q ss_pred             ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccc---cccCCcceEEEecccch
Q 036742          362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLV---PVASSAHHVELNVNLQA  436 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~---~i~sS~~vleInas~~~  436 (629)
                      +++.+++.|+.++..++++| +||+||  +||+++|+++|+.+.|..... ..|..|.+|   ....+..+..+.+.. .
T Consensus         6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~   82 (290)
T PRK07276          6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-Q   82 (290)
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-C
Confidence            46788999999999999986 579996  689999999999998865321 123334333   344566677776531 1


Q ss_pred             hhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEee
Q 036742          437 NAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK  515 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~  515 (629)
                      .   +-.+.++++...+...+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.
T Consensus        83 ~---I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~  159 (290)
T PRK07276         83 V---IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFH  159 (290)
T ss_pred             c---CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeee
Confidence            1   224677887777766543 456799999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       516 F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      |.+ +.+++.++|.    .+|+  +.+....++ ...|++..|+.++
T Consensus       160 f~~-~~~~~~~~L~----~~g~--~~~~a~~la-~~~~s~~~A~~l~  198 (290)
T PRK07276        160 FPK-NEAYLIQLLE----QKGL--LKTQAELLA-KLAQSTSEAEKLA  198 (290)
T ss_pred             CCC-cHHHHHHHHH----HcCC--ChHHHHHHH-HHCCCHHHHHHHh
Confidence            976 6666666664    4554  344444444 4446799888887

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.71  E-value=5.8e-16  Score=171.18  Aligned_cols=236  Identities=13%  Similarity=0.147  Sum_probs=155.6

Q ss_pred             CCCCccc-c--cHHHHHHHHHHHHc-----C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          355 SSLNGFI-C--HRHEAQLLKELVVD-----G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       355 ~tfddIi-G--~e~~~~~Lk~~L~~-----g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .+|++++ |  +..+...++.+...     + ..+.++||||+|+|||+|++++++++.....                 
T Consensus       108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~-----------------  170 (445)
T PRK12422        108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGG-----------------  170 (445)
T ss_pred             ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC-----------------
Confidence            3788876 3  34455666666542     1 2457999999999999999999999853321                 


Q ss_pred             ceEEEecccchhhHHHHHHHHHH-HHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc
Q 036742          426 HHVELNVNLQANAKYALMGLVKE-IRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV  501 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lre-i~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~  501 (629)
                      .++++++.....   .+...++. ....+... .....||||||++.+..  ..++.|..+++. +..+..+|++|+...
T Consensus       171 ~v~yi~~~~f~~---~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p  246 (445)
T PRK12422        171 KILYVRSELFTE---HLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP  246 (445)
T ss_pred             CEEEeeHHHHHH---HHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence            256666532111   00111110 00111100 11234999999999953  455666666542 234567899888753


Q ss_pred             ----cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCC
Q 036742          502 ----DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL-NYPFA  573 (629)
Q Consensus       502 ----~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~-~~~~~  573 (629)
                          .+.++|++||   ..+.+.+|+.+++..+|++.+...++.++++++++|+....+|+|.+++.|..++.. ++.-.
T Consensus       247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~  326 (445)
T PRK12422        247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL  326 (445)
T ss_pred             HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence                3678999999   689999999999999999999999999999999999999999999999999877421 12111


Q ss_pred             CCCCCc-hhHHHHHHHHHHHH-hcCCChHHHHHHHHHHHH
Q 036742          574 DDQPIP-LGWEEVLIELAAEI-LADPSPKRLVMVRGKIQK  611 (629)
Q Consensus       574 ~~~~~~-~~~ek~l~ei~~~i-l~~~s~~~L~~ir~kly~  611 (629)
                      .+.++. ...++++.++...- -...+++.|.+.+++.|.
T Consensus       327 ~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~  366 (445)
T PRK12422        327 SHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYG  366 (445)
T ss_pred             hCCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhC
Confidence            122222 33444454443211 112588899999888876

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.71  E-value=2.2e-16  Score=173.57  Aligned_cols=220  Identities=15%  Similarity=0.142  Sum_probs=138.0

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNE  411 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~  411 (629)
                      ..++.+++.+.+|+||.|.+..++.|.+++..           |  ...++|||||||||||++|+++|+++...     
T Consensus       170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~-----  244 (438)
T PTZ00361        170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT-----  244 (438)
T ss_pred             hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC-----
Confidence            34566788889999999999999999988851           1  23479999999999999999999987332     


Q ss_pred             CCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHH
Q 036742          412 KWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYL  479 (629)
Q Consensus       412 ~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~a  479 (629)
                                     ++.+..+..... .......++++   |.......+.||||||||.+..           +.+..
T Consensus       245 ---------------fi~V~~seL~~k~~Ge~~~~vr~l---F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~  306 (438)
T PTZ00361        245 ---------------FLRVVGSELIQKYLGDGPKLVREL---FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRT  306 (438)
T ss_pred             ---------------EEEEecchhhhhhcchHHHHHHHH---HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHH
Confidence                           334433211000 00001122222   2222234567999999998832           23333


Q ss_pred             HHHHH---hcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Q 036742          480 IKWIM---DGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA  551 (629)
Q Consensus       480 Llril---Ee~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s  551 (629)
                      +..++   +.+  ..++.||++||.++.+++++.+  |+ ..|.|+.|+.++..++|...+.+..+. ++..+..++..+
T Consensus       307 ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t  385 (438)
T PTZ00361        307 MLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAK  385 (438)
T ss_pred             HHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhc
Confidence            44433   322  3467899999999999999875  65 479999999999999999877665442 122356666555


Q ss_pred             cC----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          552 KQ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       552 ~G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                      .|    |++.+   +..+...+..-.....+..++.+++..+..
T Consensus       386 ~g~sgAdI~~i---~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~  426 (438)
T PTZ00361        386 DELSGADIKAI---CTEAGLLALRERRMKVTQADFRKAKEKVLY  426 (438)
T ss_pred             CCCCHHHHHHH---HHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence            43    44443   333333222222233444666666665543

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.71  E-value=3e-15  Score=162.35  Aligned_cols=221  Identities=14%  Similarity=0.122  Sum_probs=145.2

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ..|.|   +.++|.++.++.|..++.    .+..++++|+||||||||++++.+++++....               ...
T Consensus        25 ~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~---------------~~~   86 (394)
T PRK00411         25 PDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA---------------VKV   86 (394)
T ss_pred             CCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc---------------CCc
Confidence            44555   678899988888777764    33456899999999999999999999874321               011


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHH---------------Hhc--cCcCCCCeEEEEEccchhh----HHHHHHHHHHH
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRD---------------NLA--ITPEVSNAMIVIYEVDKAA----EHIQYLIKWIM  484 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~---------------~~~--~~~~~~~kVIIIDEID~Ls----~~~q~aLlril  484 (629)
                      .++++++........++..++..+..               .+.  ........||||||+|.+.    .+....|.+.+
T Consensus        87 ~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~  166 (394)
T PRK00411         87 VYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH  166 (394)
T ss_pred             EEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh
Confidence            26777774333322222233222211               000  0011223599999999996    34555566665


Q ss_pred             hccCC-CcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc---cC
Q 036742          485 DGYTD-SCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--DFDLSMTFAAKIATKA---KQ  553 (629)
Q Consensus       485 Ee~~~-~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--gl~is~e~L~~Ia~~s---~G  553 (629)
                      +.... .+.+|+++|...   .+.+.+++|+  ..+.|++|+.+++.++|...+...  .-.+++++++.+++.+   .|
T Consensus       167 ~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G  246 (394)
T PRK00411        167 EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG  246 (394)
T ss_pred             hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence            54433 566889988764   3667788887  478999999999999999887542  2257899999998887   89


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742          554 NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE  588 (629)
Q Consensus       554 DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e  588 (629)
                      |+|.++++|..+...+...........++..++.+
T Consensus       247 d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~  281 (394)
T PRK00411        247 DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK  281 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence            99999999987554332222233344555544443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.71  E-value=4.8e-16  Score=169.54  Aligned_cols=216  Identities=17%  Similarity=0.174  Sum_probs=136.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+.+++.|++++.           -|  ...++|||||||||||++|+++|+++. ..            
T Consensus       140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-~~------------  206 (398)
T PTZ00454        140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-AT------------  206 (398)
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-CC------------
Confidence            34567999999999999998874           12  234899999999999999999999863 22            


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH---Hh
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI---MD  485 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri---lE  485 (629)
                             ++.+.++....  ..+.+..+.+...|.......++||||||+|.+..           ..+..+..+   ++
T Consensus       207 -------fi~i~~s~l~~--k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld  277 (398)
T PTZ00454        207 -------FIRVVGSEFVQ--KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD  277 (398)
T ss_pred             -------EEEEehHHHHH--HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence                   33443321100  00001111112222223334567999999998831           233344444   33


Q ss_pred             cc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHH
Q 036742          486 GY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN-LRKAI  559 (629)
Q Consensus       486 e~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD-iR~AI  559 (629)
                      .+  ..++.||++||.++.|++++.+  |+ ..|.|+.|+.++...+++.++.+.++. .+-.+..++..+.|- ...+.
T Consensus       278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~  356 (398)
T PTZ00454        278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIA  356 (398)
T ss_pred             ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHH
Confidence            32  2467799999999999999987  66 469999999999999999888765543 223467778776542 33344


Q ss_pred             HHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          560 MALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       560 nlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                      ++++.+...+...........++++.+..+..
T Consensus       357 ~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~  388 (398)
T PTZ00454        357 AICQEAGMQAVRKNRYVILPKDFEKGYKTVVR  388 (398)
T ss_pred             HHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence            44444433332222233444677777766654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.9e-16  Score=172.89  Aligned_cols=175  Identities=17%  Similarity=0.180  Sum_probs=130.6

Q ss_pred             CCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ++|+||.+++++...|..++..           |  ...+||||||||||||.||+|+|++. +.++             
T Consensus       508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NF-------------  573 (802)
T KOG0733|consen  508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANF-------------  573 (802)
T ss_pred             CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCce-------------
Confidence            4789999999999999887741           1  12379999999999999999999995 5543             


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc--C
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY--T  488 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~--~  488 (629)
                            +-+..-..  ....+.+.-+.+++.|+.+....++|||+||+|.|.           ....+.|+.-|+..  .
T Consensus       574 ------isVKGPEL--lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R  645 (802)
T KOG0733|consen  574 ------ISVKGPEL--LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER  645 (802)
T ss_pred             ------EeecCHHH--HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence                  33222110  011233444666777777777888999999999992           34667777777744  3


Q ss_pred             CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHc
Q 036742          489 DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKA  551 (629)
Q Consensus       489 ~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s  551 (629)
                      .++.+|.+||+++.|+++|.+-  + ..+.+..|+.++...||+.+.+..+..+++++ ++.|+...
T Consensus       646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~  712 (802)
T KOG0733|consen  646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT  712 (802)
T ss_pred             cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence            5667888999999999999984  4 35777889999999999999886667776665 88888653

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.69  E-value=1e-15  Score=169.29  Aligned_cols=236  Identities=13%  Similarity=0.162  Sum_probs=150.1

Q ss_pred             CCCCccc-c--cHHHHHHHHHHHH-cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          355 SSLNGFI-C--HRHEAQLLKELVV-DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       355 ~tfddIi-G--~e~~~~~Lk~~L~-~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      .+|++++ |  +..+......+.. .+.+++++||||+|||||+|++++++++.....               ...++++
T Consensus       102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~---------------~~~v~yi  166 (440)
T PRK14088        102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP---------------DLRVMYI  166 (440)
T ss_pred             CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCC---------------CCeEEEE
Confidence            3788887 4  3335556666665 333567999999999999999999998743211               1126777


Q ss_pred             ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc-c--
Q 036742          431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV-D--  502 (629)
Q Consensus       431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~-~--  502 (629)
                      ++.+....  ..+....+.++...+.    ....||||||++.+..  ..+..|..+++. +..+..+|++|+... .  
T Consensus       167 ~~~~f~~~~~~~~~~~~~~~f~~~~~----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~  242 (440)
T PRK14088        167 TSEKFLNDLVDSMKEGKLNEFREKYR----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS  242 (440)
T ss_pred             EHHHHHHHHHHHHhcccHHHHHHHHH----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence            66421110  0000011112222111    1235999999998842  344455555543 334456888876433 2  


Q ss_pred             -chHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          503 -IIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       503 -I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                       +.+.++||+.   ++.|.+|+.+.+..+|++.+..+++.++++++.+|++.+.||+|.+...|..+......  .+.++
T Consensus       243 ~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~--~~~~i  320 (440)
T PRK14088        243 EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKET--TGEEV  320 (440)
T ss_pred             HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHH--hCCCC
Confidence             5788999985   89999999999999999999999999999999999999999999988888765432211  11222


Q ss_pred             c-hhHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH
Q 036742          579 P-LGWEEVLIELAAEILA--DPSPKRLVMVRGKIQK  611 (629)
Q Consensus       579 ~-~~~ek~l~ei~~~il~--~~s~~~L~~ir~kly~  611 (629)
                      . ....+++.++...--.  .-+++.+...+++.|.
T Consensus       321 t~~~a~~~L~~~~~~~~~~~~i~~~~I~~~V~~~~~  356 (440)
T PRK14088        321 DLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTG  356 (440)
T ss_pred             CHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHcC
Confidence            2 3334444444221111  1467777777777765

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.69  E-value=5.7e-16  Score=168.77  Aligned_cols=210  Identities=16%  Similarity=0.152  Sum_probs=132.9

Q ss_pred             CCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      ..+++||+|.+..++.|.+++..             ....++|||||||||||++|+++|.++...              
T Consensus       127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~--------------  192 (389)
T PRK03992        127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--------------  192 (389)
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--------------
Confidence            34569999999999999988741             123479999999999999999999987322              


Q ss_pred             ccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc-
Q 036742          421 VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY-  487 (629)
Q Consensus       421 i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~-  487 (629)
                            ++.++++..... .......++.+   |.......+.||||||+|.+.           ...+..+..++.+. 
T Consensus       193 ------~i~v~~~~l~~~~~g~~~~~i~~~---f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld  263 (389)
T PRK03992        193 ------FIRVVGSELVQKFIGEGARLVREL---FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD  263 (389)
T ss_pred             ------EEEeehHHHhHhhccchHHHHHHH---HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence                  345544321100 00001222222   222223345799999999983           33455555555332 


Q ss_pred             ----CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHH
Q 036742          488 ----TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLR  556 (629)
Q Consensus       488 ----~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR  556 (629)
                          ...+.||++||.++.+++++.+  |+ ..|.|++|+.++..++|+.++.+..+. .+..+..|+..+.|    |++
T Consensus       264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~  342 (389)
T PRK03992        264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLK  342 (389)
T ss_pred             ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHH
Confidence                2467899999999999999986  66 579999999999999999877654432 12346778887665    444


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       557 ~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      .++...-..+..   -........++.+++..+.
T Consensus       343 ~l~~eA~~~a~~---~~~~~i~~~d~~~A~~~~~  373 (389)
T PRK03992        343 AICTEAGMFAIR---DDRTEVTMEDFLKAIEKVM  373 (389)
T ss_pred             HHHHHHHHHHHH---cCCCCcCHHHHHHHHHHHh
Confidence            433332222221   1222334456666665554

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.9e-16  Score=171.94  Aligned_cols=179  Identities=19%  Similarity=0.167  Sum_probs=125.3

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHH-----------cCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVV-----------DGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      +..-++|+|+.|.+++++.|++.+.           .|++| +|||.||||||||.||+|+|.+..-+.+          
T Consensus       297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF----------  366 (752)
T KOG0734|consen  297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFF----------  366 (752)
T ss_pred             hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeE----------
Confidence            3445689999999999999998885           55665 8999999999999999999998633322          


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY  487 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~  487 (629)
                                +...+.  .+...+.--.+.++..|..+....+|||||||+|.+.           ....|.|+--|+.+
T Consensus       367 ----------~~sGSE--FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF  434 (752)
T KOG0734|consen  367 ----------YASGSE--FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF  434 (752)
T ss_pred             ----------eccccc--hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence                      111110  0011111112334444555555667899999999992           23456666667766


Q ss_pred             CCC--cEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742          488 TDS--CKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ  553 (629)
Q Consensus       488 ~~~--~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G  553 (629)
                      ..+  +.||.+||.++.++++|.+  || ..|.++.|+..-..+||...+.+  +.++++ .+..||+.+.|
T Consensus       435 ~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~G  504 (752)
T KOG0734|consen  435 KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPG  504 (752)
T ss_pred             CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCC
Confidence            544  5566689999999999987  45 46889999999999999988876  444433 36677877665

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.69  E-value=1.4e-15  Score=166.40  Aligned_cols=234  Identities=18%  Similarity=0.207  Sum_probs=149.3

Q ss_pred             CCCccc-cc--HHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          356 SLNGFI-CH--RHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       356 tfddIi-G~--e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +|++++ |.  ..+...++.+....  ....++||||+|+|||+|++++++++.....               ...++++
T Consensus       108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~---------------~~~v~yi  172 (405)
T TIGR00362       108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNP---------------NAKVVYV  172 (405)
T ss_pred             cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------------CCcEEEE
Confidence            677754 43  33555666666542  2346899999999999999999999853210               1126777


Q ss_pred             ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc---
Q 036742          431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD---  502 (629)
Q Consensus       431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~---  502 (629)
                      ++......  ..+....+..+...+.     ...+|||||+|.+..  ..+..|..+++. +..+..+|++++....   
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~  247 (405)
T TIGR00362       173 SSEKFTNDFVNALRNNKMEEFKEKYR-----SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP  247 (405)
T ss_pred             EHHHHHHHHHHHHHcCCHHHHHHHHH-----hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence            76421110  0000001111111111     124999999999843  345556666553 2355678888886432   


Q ss_pred             -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                       +.+.|++|+   ..+.|.+|+.+++..+|+..+...++.++++++++|++...||+|.+...|..+...+..  .+.++
T Consensus       248 ~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~--~~~~i  325 (405)
T TIGR00362       248 GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL--TGKPI  325 (405)
T ss_pred             hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCCCC
Confidence             568899998   479999999999999999999999999999999999999999999877776654432211  11222


Q ss_pred             c-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742          579 P-LGWEEVLIELAAEILADPSPKRLVMVRGKIQK  611 (629)
Q Consensus       579 ~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~  611 (629)
                      . ..+++++.++...-...-+++.+..++++.|.
T Consensus       326 t~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~~  359 (405)
T TIGR00362       326 TLELAKEALKDLLRAKKKEITIENIQEVVAKYYN  359 (405)
T ss_pred             CHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcC
Confidence            2 23344444432211123477888888777665

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=9.9e-17  Score=164.24  Aligned_cols=184  Identities=18%  Similarity=0.173  Sum_probs=125.1

Q ss_pred             hHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       335 ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      +.-+++.+...+-|         +||.|.+.+++.|++.+-            ...+.+|||||||||||+.||+|+|.+
T Consensus       119 L~sAIv~EKPNVkW---------sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE  189 (439)
T KOG0739|consen  119 LNSAIVREKPNVKW---------SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE  189 (439)
T ss_pred             hhhhhhccCCCCch---------hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence            44456777777777         999999999999999883            223568999999999999999999999


Q ss_pred             HhCCCCCCCCCCccccccccCCcceEEEec----ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----hH
Q 036742          403 IYGDACWNEKWPTQVLVPVASSAHHVELNV----NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----AE  474 (629)
Q Consensus       403 L~g~~~~~~~~~~~v~~~i~sS~~vleIna----s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----s~  474 (629)
                      .. ..+                   +-+..    +.+.|....   +++   +.|.......+.||||||||.+    ..
T Consensus       190 An-STF-------------------FSvSSSDLvSKWmGESEk---LVk---nLFemARe~kPSIIFiDEiDslcg~r~e  243 (439)
T KOG0739|consen  190 AN-STF-------------------FSVSSSDLVSKWMGESEK---LVK---NLFEMARENKPSIIFIDEIDSLCGSRSE  243 (439)
T ss_pred             cC-Cce-------------------EEeehHHHHHHHhccHHH---HHH---HHHHHHHhcCCcEEEeehhhhhccCCCC
Confidence            74 332                   33333    233443322   222   2334444556679999999998    23


Q ss_pred             HHHHHHHHHHhcc----------CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHH-HHHHHHHhcCCCCCHHH
Q 036742          475 HIQYLIKWIMDGY----------TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME-VLIQIARKEDFDLSMTF  543 (629)
Q Consensus       475 ~~q~aLlrilEe~----------~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~-iL~~i~~kegl~is~e~  543 (629)
                      +..++-+++..++          ...+.++.+||-++.++.+||+||....+.|++....+. .++-.+..-...+++..
T Consensus       244 nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d  323 (439)
T KOG0739|consen  244 NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD  323 (439)
T ss_pred             CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhh
Confidence            3445555554332          244566678999999999999999765555555444443 34333444445678899


Q ss_pred             HHHHHHHccC
Q 036742          544 AAKIATKAKQ  553 (629)
Q Consensus       544 L~~Ia~~s~G  553 (629)
                      +.+|+..+.|
T Consensus       324 ~~eL~~kTeG  333 (439)
T KOG0739|consen  324 FKELARKTEG  333 (439)
T ss_pred             HHHHHhhcCC
Confidence            9999999876

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.68  E-value=9.7e-16  Score=170.79  Aligned_cols=182  Identities=14%  Similarity=0.123  Sum_probs=126.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH--------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV--------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~--------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ...+|+||.|.+.+++.|.+...        -|  ...++|||||||||||++|+++|.++ +..               
T Consensus       223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~---------------  286 (489)
T CHL00195        223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLP---------------  286 (489)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCC---------------
Confidence            45689999999998888876432        12  23479999999999999999999997 433               


Q ss_pred             CCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------HHHHHHHHHHhc
Q 036742          423 SSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------HIQYLIKWIMDG  486 (629)
Q Consensus       423 sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------~~q~aLlrilEe  486 (629)
                          ++.+++..    ..|..   ...++.+..   ......++||||||||.+..            .....|+..+++
T Consensus       287 ----~~~l~~~~l~~~~vGes---e~~l~~~f~---~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~  356 (489)
T CHL00195        287 ----LLRLDVGKLFGGIVGES---ESRMRQMIR---IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE  356 (489)
T ss_pred             ----EEEEEhHHhcccccChH---HHHHHHHHH---HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc
Confidence                34444421    11111   122333322   22234567999999998733            233456666666


Q ss_pred             cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccC----CHHHH
Q 036742          487 YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATKAKQ----NLRKA  558 (629)
Q Consensus       487 ~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~s~G----DiR~A  558 (629)
                      ....+.||+|||.++.|++++.+  || ..+.|+.|+.++..++++..+.+.+.. ..+..+..|+..+.|    ||+.+
T Consensus       357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l  436 (489)
T CHL00195        357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS  436 (489)
T ss_pred             CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence            66667788899999999999987  77 578899999999999999888775433 335568888888765    55544


Q ss_pred             HH
Q 036742          559 IM  560 (629)
Q Consensus       559 In  560 (629)
                      +.
T Consensus       437 v~  438 (489)
T CHL00195        437 II  438 (489)
T ss_pred             HH
Confidence            43

>CHL00176 ftsH cell division protein; Validated

Probab=99.68  E-value=2.5e-15  Score=172.24  Aligned_cols=214  Identities=15%  Similarity=0.096  Sum_probs=137.5

Q ss_pred             CCCCCcccccHHHHHHHHHHHH---c---------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVV---D---------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~---~---------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+|+||+|.+++++.|.+++.   .         ....++||+||||||||++|+++|.++ +..              
T Consensus       179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p--------------  243 (638)
T CHL00176        179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVP--------------  243 (638)
T ss_pred             CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCC--------------
Confidence            4688999999999988887763   1         113479999999999999999999986 332              


Q ss_pred             cCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HH---HHHHHHHHhc
Q 036742          422 ASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HI---QYLIKWIMDG  486 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~---q~aLlrilEe  486 (629)
                           ++.++++...... ......++.   .|.......++||||||+|.+..           ..   .+.|+..++.
T Consensus       244 -----~i~is~s~f~~~~~g~~~~~vr~---lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg  315 (638)
T CHL00176        244 -----FFSISGSEFVEMFVGVGAARVRD---LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG  315 (638)
T ss_pred             -----eeeccHHHHHHHhhhhhHHHHHH---HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence                 3444443211100 000112222   22222334567999999999832           22   3334444444


Q ss_pred             cC--CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 036742          487 YT--DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NLRKAIM  560 (629)
Q Consensus       487 ~~--~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-DiR~AIn  560 (629)
                      +.  ..+.||++||.++.++++|+++  + ..+.|..|+.+++.++|+.++.+..+ .++..+..|++.+.| +.+.+-+
T Consensus       316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~  394 (638)
T CHL00176        316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLAN  394 (638)
T ss_pred             ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHH
Confidence            33  4567888999999999999974  4 57999999999999999998877433 245568889998887 4444444


Q ss_pred             HHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          561 ALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       561 lLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                      ++..++..+........+..++++++..+..
T Consensus       395 lvneAal~a~r~~~~~It~~dl~~Ai~rv~~  425 (638)
T CHL00176        395 LLNEAAILTARRKKATITMKEIDTAIDRVIA  425 (638)
T ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence            4444333222222233444667776666543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.68  E-value=1.7e-15  Score=179.07  Aligned_cols=206  Identities=15%  Similarity=0.189  Sum_probs=150.0

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH  427 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v  427 (629)
                      .+++.+|.++++++|+++.+..+.+++..+..+++||+||||||||++|+.+|+.+....+.          .......+
T Consensus       177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~----------~~l~~~~i  246 (852)
T TIGR03345       177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP----------PALRNVRL  246 (852)
T ss_pred             HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC----------ccccCCeE
Confidence            56889999999999999999999999988888999999999999999999999987433220          11122224


Q ss_pred             EEEeccc---chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEEE
Q 036742          428 VELNVNL---QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLILC  496 (629)
Q Consensus       428 leInas~---~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ILi  496 (629)
                      +.++...   .......+.+.++.++.....  ...+.||||||+|.+..        ++.+.|+..++.  ....+|.+
T Consensus       247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga  322 (852)
T TIGR03345       247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA  322 (852)
T ss_pred             EEeehhhhhcccccchHHHHHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence            4333321   001111233455555544322  12456999999999953        233467777763  56778888


Q ss_pred             ecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHHH
Q 036742          497 CEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIMA  561 (629)
Q Consensus       497 tN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AInl  561 (629)
                      |+..+     .++++|.+||..|.|.+|+.++...+|+.+...    .++.++++++..++..+.+.+      .+||.+
T Consensus       323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl  402 (852)
T TIGR03345       323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL  402 (852)
T ss_pred             cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence            87632     379999999999999999999999997665532    468899999999999998654      589999


Q ss_pred             HHHHHh
Q 036742          562 LEACKA  567 (629)
Q Consensus       562 Lq~~~~  567 (629)
                      |+.++.
T Consensus       403 ldea~a  408 (852)
T TIGR03345       403 LDTACA  408 (852)
T ss_pred             HHHHHH
Confidence            987554

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK05642 DNA replication initiation factor; Validated

Probab=99.68  E-value=2.3e-15  Score=153.12  Aligned_cols=183  Identities=14%  Similarity=0.169  Sum_probs=132.4

Q ss_pred             CCCCccc-c-cHHHHHHHHHHHHcC-C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          355 SSLNGFI-C-HRHEAQLLKELVVDG-N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       355 ~tfddIi-G-~e~~~~~Lk~~L~~g-~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      -+|++++ | +..++..++.|.... .  .+.++|+||+|+|||+|++++++++.....                 .+++
T Consensus        16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~-----------------~v~y   78 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGE-----------------PAVY   78 (234)
T ss_pred             ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEE
Confidence            4788886 3 344556666665431 2  357899999999999999999988642211                 2566


Q ss_pred             EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhcc-CCCcEEEEEecCCcc----
Q 036742          430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDGY-TDSCKLILCCEDDVD----  502 (629)
Q Consensus       430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe~-~~~~~~ILitN~~~~----  502 (629)
                      +++.+...       ....+.+.+..     ..+|+|||++.+.  ...+..|..+++.. ..+..+|++++....    
T Consensus        79 ~~~~~~~~-------~~~~~~~~~~~-----~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~  146 (234)
T PRK05642         79 LPLAELLD-------RGPELLDNLEQ-----YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPI  146 (234)
T ss_pred             eeHHHHHh-------hhHHHHHhhhh-----CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence            66632111       01112222211     1389999999884  34456677777643 345678888876432    


Q ss_pred             chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          503 IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       503 I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      +.+.|+||+   .++.+.+|+.+++..+|+..+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus       147 ~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  213 (234)
T PRK05642        147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD  213 (234)
T ss_pred             cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            479999999   8899999999999999998888889999999999999999999999999998764

>PRK06620 hypothetical protein; Validated

Probab=99.68  E-value=1.6e-15  Score=152.54  Aligned_cols=168  Identities=20%  Similarity=0.224  Sum_probs=120.9

Q ss_pred             CCCcccc---cHHHHHHHHHHHHc-C-CC--CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          356 SLNGFIC---HRHEAQLLKELVVD-G-NC--PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       356 tfddIiG---~e~~~~~Lk~~L~~-g-~~--p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      +|++++.   ++.+...+++|... + ..  +.++||||||||||||++++++.. +..                   + 
T Consensus        14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~~~-------------------~-   72 (214)
T PRK06620         14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-NAY-------------------I-   72 (214)
T ss_pred             CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-CCE-------------------E-
Confidence            5677653   56688888888863 2 11  569999999999999999988764 211                   1 


Q ss_pred             EEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCCcc--chH
Q 036742          429 ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDDVD--IIE  505 (629)
Q Consensus       429 eInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~~~--I~~  505 (629)
                       +... ...         .+.   +     ....+|+|||||.+.. ...+.+..+.|   .+..+|++++....  -.+
T Consensus        73 -~~~~-~~~---------~~~---~-----~~~d~lliDdi~~~~~~~lf~l~N~~~e---~g~~ilits~~~p~~l~l~  130 (214)
T PRK06620         73 -IKDI-FFN---------EEI---L-----EKYNAFIIEDIENWQEPALLHIFNIINE---KQKYLLLTSSDKSRNFTLP  130 (214)
T ss_pred             -cchh-hhc---------hhH---H-----hcCCEEEEeccccchHHHHHHHHHHHHh---cCCEEEEEcCCCccccchH
Confidence             1000 000         000   0     1224899999998753 23333344444   34466776654332  138


Q ss_pred             HHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          506 SVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       506 aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      +|+||+.   ++.+.+|+.+++..++++.+...++.++++++++|+..+.||+|.++++|+.+.
T Consensus       131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  194 (214)
T PRK06620        131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN  194 (214)
T ss_pred             HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999997   999999999999999999999889999999999999999999999999999864

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.67  E-value=1.1e-14  Score=155.07  Aligned_cols=166  Identities=16%  Similarity=0.204  Sum_probs=126.2

Q ss_pred             cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCCc---cccccccCCcceEEEeccc--
Q 036742          363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWPT---QVLVPVASSAHHVELNVNL--  434 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~~---~v~~~i~sS~~vleInas~--  434 (629)
                      +....+.|...  .++.+| +||+||+|+|||++|+.+|+.+.|.....  ..|..   |..+....+..+.++.+..  
T Consensus         6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~   83 (325)
T PRK08699          6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE   83 (325)
T ss_pred             cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence            34444455544  467776 78999999999999999999998753211  12333   3444455677788887632  


Q ss_pred             -chhh--HHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhc
Q 036742          435 -QANA--KYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH  510 (629)
Q Consensus       435 -~~~~--k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR  510 (629)
                       ..+.  ..+-++.+|++.......+ .+..+|+|||+++.|+..++++|++++|++...+.||++|+.+..+.++|+||
T Consensus        84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR  163 (325)
T PRK08699         84 PENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR  163 (325)
T ss_pred             ccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence             1121  1133577788776666554 35567999999999999999999999999988899999999999999999999


Q ss_pred             ceEeeccCCCHHHHHHHHHH
Q 036742          511 CKVIKVDPPVTHEIMEVLIQ  530 (629)
Q Consensus       511 ~~~I~F~ppt~eei~~iL~~  530 (629)
                      |+.+.|.+++.+++..+|..
T Consensus       164 c~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        164 CRKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             hhhhcCCCCCHHHHHHHHHh
Confidence            99999999999999988864

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=8e-16  Score=154.63  Aligned_cols=211  Identities=15%  Similarity=0.149  Sum_probs=138.5

Q ss_pred             CCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      ..+..||.|.+-.++.+++.+.           -  ....++|+|||||||||.||+++|+.....              
T Consensus       151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--------------  216 (408)
T KOG0727|consen  151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--------------  216 (408)
T ss_pred             CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--------------
Confidence            3466999999999999998885           1  233489999999999999999999875222              


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc---
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG---  486 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe---  486 (629)
                            ++.++.+..  ..+.+.+--+.++..|.+.....+.||||||||.+.           .+.|..|..++..   
T Consensus       217 ------firvvgsef--vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg  288 (408)
T KOG0727|consen  217 ------FIRVVGSEF--VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG  288 (408)
T ss_pred             ------eeeeccHHH--HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence                  333333211  111222333445556666666777899999999983           3566666666543   


Q ss_pred             c--CCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH----ccCCHH
Q 036742          487 Y--TDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATK----AKQNLR  556 (629)
Q Consensus       487 ~--~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~----s~GDiR  556 (629)
                      +  ..++.+|++||+.+.++++|.+-.   ..|+|+.|+..+-+-++..++.+.++.  ++ .++.++..    ++.|| 
T Consensus       289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls--~~vdle~~v~rpdkis~adi-  365 (408)
T KOG0727|consen  289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS--DEVDLEDLVARPDKISGADI-  365 (408)
T ss_pred             cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC--cccCHHHHhcCccccchhhH-
Confidence            3  366789999999999999998754   579999999999999999998886553  32 24444322    22333 


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       557 ~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                        ..++|.+...+...........++++.....++
T Consensus       366 --~aicqeagm~avr~nryvvl~kd~e~ay~~~vk  398 (408)
T KOG0727|consen  366 --NAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK  398 (408)
T ss_pred             --HHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence              333444433333222223344666666555443

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=6.2e-16  Score=162.94  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=126.0

Q ss_pred             CCCCcccccHHHHHHHHHHHH----------c----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVV----------D----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~----------~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      ++|+||.|.+.+++.|++.+.          .    +...+||||||||||||.+|+++|++. |..+.          +
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fI----------n  157 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFI----------N  157 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcc----------e
Confidence            468999999999999999884          1    223489999999999999999999996 44331          1


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhcc---------
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGY---------  487 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~---------  487 (629)
                      +..+.-.     +.+.|.      ..+-+...|......++.||||||+|.+..    ..+++....-.++         
T Consensus       158 v~~s~lt-----~KWfgE------~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s  226 (386)
T KOG0737|consen  158 VSVSNLT-----SKWFGE------AQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS  226 (386)
T ss_pred             eeccccc-----hhhHHH------HHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence            1111100     233332      223333345555567788999999999852    2233333322221         


Q ss_pred             --CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHH
Q 036742          488 --TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRK  557 (629)
Q Consensus       488 --~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~  557 (629)
                        ...+.|+.+||++.++++++.+|+ ..++++-|+..+..+||+-++..+.+. ++-.+..|+..+.|.-..
T Consensus       227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGS  298 (386)
T KOG0737|consen  227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGS  298 (386)
T ss_pred             CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHH
Confidence              122445558999999999999997 689999999999999999999998775 444588899998875443

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.66  E-value=5.2e-15  Score=167.27  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=152.0

Q ss_pred             CCCcccc---cHHHHHHHHHHHHc-C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          356 SLNGFIC---HRHEAQLLKELVVD-G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       356 tfddIiG---~e~~~~~Lk~~L~~-g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +|++++.   +..+...+..++.. + ..+.++|||++|||||+|+++|++++.....               ...++++
T Consensus       286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~---------------g~~V~Yi  350 (617)
T PRK14086        286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP---------------GTRVRYV  350 (617)
T ss_pred             CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCC---------------CCeEEEe
Confidence            6788763   33344455555543 2 2345999999999999999999998742110               1126777


Q ss_pred             ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc-CCCcEEEEEecCCc----
Q 036742          431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY-TDSCKLILCCEDDV----  501 (629)
Q Consensus       431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~-~~~~~~ILitN~~~----  501 (629)
                      ++......  ..+....+..+.+.+.     ...||||||++.+..  ..+..|..+++.. ..+..+|++++...    
T Consensus       351 taeef~~el~~al~~~~~~~f~~~y~-----~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~  425 (617)
T PRK14086        351 SSEEFTNEFINSIRDGKGDSFRRRYR-----EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV  425 (617)
T ss_pred             eHHHHHHHHHHHHHhccHHHHHHHhh-----cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence            66321110  0000011111111111     124999999999833  3455666666533 34567888888753    


Q ss_pred             cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          502 DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       502 ~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      .+++.|++|+   .++.+.+|+.+.+..||+..+...++.++++++.+|+....+|+|.+..+|..+......  .+..+
T Consensus       426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~--~~~~i  503 (617)
T PRK14086        426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASL--NRQPV  503 (617)
T ss_pred             hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--hCCCC
Confidence            3678999998   579999999999999999999999999999999999999999999988888765432221  12222


Q ss_pred             c-hhHHHHHHHHHHHH-hcCCChHHHHHHHHHHHH
Q 036742          579 P-LGWEEVLIELAAEI-LADPSPKRLVMVRGKIQK  611 (629)
Q Consensus       579 ~-~~~ek~l~ei~~~i-l~~~s~~~L~~ir~kly~  611 (629)
                      . ...++++.++.... ...-+++.|.+++++.|.
T Consensus       504 tl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~  538 (617)
T PRK14086        504 DLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFG  538 (617)
T ss_pred             CHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhC
Confidence            2 23344444433211 113478889988888876

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.66  E-value=6.7e-15  Score=148.45  Aligned_cols=193  Identities=18%  Similarity=0.263  Sum_probs=129.6

Q ss_pred             CCCCccc-c--cHHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          355 SSLNGFI-C--HRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       355 ~tfddIi-G--~e~~~~~Lk~~L~~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      -+|+.++ |  ++.+......+.....  ...++||||+|+|||+|++++++++....               ....+++
T Consensus         5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~---------------~~~~v~y   69 (219)
T PF00308_consen    5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH---------------PGKRVVY   69 (219)
T ss_dssp             -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC---------------TTS-EEE
T ss_pred             CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc---------------cccccee
Confidence            3788886 4  5667777777665432  34689999999999999999999874211               0123778


Q ss_pred             Eecccchh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH--HHHHHHHHHhcc-CCCcEEEEEecCCc---
Q 036742          430 LNVNLQAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH--IQYLIKWIMDGY-TDSCKLILCCEDDV---  501 (629)
Q Consensus       430 Inas~~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--~q~aLlrilEe~-~~~~~~ILitN~~~---  501 (629)
                      +++.....  ...+....+.++...+..     ..+|+||+++.+...  .+..|..+++.. ..+..+|++++...   
T Consensus        70 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l  144 (219)
T PF00308_consen   70 LSAEEFIREFADALRDGEIEEFKDRLRS-----ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL  144 (219)
T ss_dssp             EEHHHHHHHHHHHHHTTSHHHHHHHHCT-----SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred             ecHHHHHHHHHHHHHcccchhhhhhhhc-----CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence            77742211  000000111222222222     249999999999543  477777777643 35568899986643   


Q ss_pred             -cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          502 -DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       502 -~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                       .+.+.|+||+   .++.+.+|+.+..+.+|++.+...++.++++++.+|++...+|+|.+..+|..+.+
T Consensus       145 ~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~  214 (219)
T PF00308_consen  145 SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDA  214 (219)
T ss_dssp             TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred             cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence             2678999997   58999999999999999999999999999999999999999999999999887654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.65  E-value=7.2e-15  Score=150.70  Aligned_cols=171  Identities=12%  Similarity=0.087  Sum_probs=131.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP  457 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~  457 (629)
                      .+||+||.|+||..+|.++|+.+.|... ...|..|.+|.   ......+..+.+... .   +-.+.++++.+.+....
T Consensus         9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~-~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~---I~id~ir~l~~~l~~~s   83 (261)
T PRK05818          9 PLLLIERKGSFLKPFLYEYLTSIVCTKA-NGFCKTCESCLKILNGKYNDFYLIFDQKN-P---IKKEDALSIINKLNRPS   83 (261)
T ss_pred             ceeeeCCCCCcHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHhcCCCCCEEEecCCcc-c---CCHHHHHHHHHHHccCc
Confidence            4789999999999999999999988752 22234444443   334555665544321 1   22467778777776655


Q ss_pred             -C-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCC----------CHHHHH
Q 036742          458 -E-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP----------VTHEIM  525 (629)
Q Consensus       458 -~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~pp----------t~eei~  525 (629)
                       . +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|+++          .+.++.
T Consensus        84 ~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~  163 (261)
T PRK05818         84 VESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQ  163 (261)
T ss_pred             hhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHH
Confidence             2 4578999999999999999999999999999999999999999999999999999999888          455555


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       526 ~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                      +.|..   +.+  +++    .++..++|++.+++.+++.+
T Consensus       164 ~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l  194 (261)
T PRK05818        164 YILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETL  194 (261)
T ss_pred             HHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence            54432   222  333    67788999999999999865

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.7e-15  Score=171.35  Aligned_cols=219  Identities=16%  Similarity=0.109  Sum_probs=144.2

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH----------cC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV----------DG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~----------~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      .+.+|.|+.|.+++++.|.+++.          .| . ..++||+||||||||.||+|+|.+..-+              
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--------------  371 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------------  371 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--------------
Confidence            45789999999999999999885          22 2 3489999999999999999999996322              


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH---------------HHHHHHHHHHh
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE---------------HIQYLIKWIMD  485 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~---------------~~q~aLlrilE  485 (629)
                            ++.+++++....  ...-.--.+...|.......++||||||||.+..               ...|.|+--|+
T Consensus       372 ------F~svSGSEFvE~--~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD  443 (774)
T KOG0731|consen  372 ------FFSVSGSEFVEM--FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD  443 (774)
T ss_pred             ------eeeechHHHHHH--hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence                  233333211000  0000011223445555666778999999998822               23455666666


Q ss_pred             ccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHH-
Q 036742          486 GYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI-  559 (629)
Q Consensus       486 e~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AI-  559 (629)
                      .+.  ..+.|+.+||.++-++++|++  |+ ..|.+..|+.....+|++.++.+-.+..++..+..|+..+.|....-| 
T Consensus       444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~  523 (774)
T KOG0731|consen  444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA  523 (774)
T ss_pred             CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence            543  445677789999999999998  44 478899999999999999888876666566667779998877544332 


Q ss_pred             HHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 036742          560 MALEACKALNYPFADDQPIPLGWEEVLIELAAEI  593 (629)
Q Consensus       560 nlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~i  593 (629)
                      |++..+++.+...........+++.++..+...+
T Consensus       524 n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~  557 (774)
T KOG0731|consen  524 NLCNEAALLAARKGLREIGTKDLEYAIERVIAGM  557 (774)
T ss_pred             hhhhHHHHHHHHhccCccchhhHHHHHHHHhccc
Confidence            3333333333322233333356666666544443

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=99.65  E-value=5e-16  Score=181.53  Aligned_cols=199  Identities=19%  Similarity=0.266  Sum_probs=158.7

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcC------------C--CCe--EEEEcCCCCcHHHHHHHHHHHHhCCCCC
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDG------------N--CPH--ILIKGQSGSGKRALAMALLHEIYGDACW  409 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g------------~--~p~--ILL~GPPGtGKTtLAraLAkeL~g~~~~  409 (629)
                      +.|.++|+|....+++|+......+.+|+..-            .  ...  ++++||||+|||+.|+++|+++ |..  
T Consensus       308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~-g~~--  384 (871)
T KOG1968|consen  308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL-GFK--  384 (871)
T ss_pred             cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-ccc--
Confidence            68999999999999999999888888888632            0  112  6899999999999999999996 664  


Q ss_pred             CCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC-----------CCeEEEEEccchhhH---H
Q 036742          410 NEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV-----------SNAMIVIYEVDKAAE---H  475 (629)
Q Consensus       410 ~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~-----------~~kVIIIDEID~Ls~---~  475 (629)
                                       ++|+|+++.++.. .+.+.+.++.....+....           ...|||+||+|.|..   +
T Consensus       385 -----------------v~E~Nas~~RSk~-~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg  446 (871)
T KOG1968|consen  385 -----------------VVEKNASDVRSKK-ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG  446 (871)
T ss_pred             -----------------eeecCcccccccc-HHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh
Confidence                             7999999888643 3334444433222222111           122999999999976   4


Q ss_pred             HHHHHHHHHhccCCCcEEEEEecCCccc-hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742          476 IQYLIKWIMDGYTDSCKLILCCEDDVDI-IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN  554 (629)
Q Consensus       476 ~q~aLlrilEe~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD  554 (629)
                      ....|-.++.  ....++|++||+...- ..++.+-|..++|..|....+..+|..+|..+++.|+++.++.++..++||
T Consensus       447 ~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~D  524 (871)
T KOG1968|consen  447 GVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGD  524 (871)
T ss_pred             hHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccC
Confidence            4455555555  4678899999998874 567777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 036742          555 LRKAIMALEACKA  567 (629)
Q Consensus       555 iR~AInlLq~~~~  567 (629)
                      +|.+|+.|+++..
T Consensus       525 iR~~i~~lq~~~~  537 (871)
T KOG1968|consen  525 IRQIIMQLQFWSL  537 (871)
T ss_pred             HHHHHHHHhhhhc
Confidence            9999999999844

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.65  E-value=3.6e-15  Score=160.98  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=117.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+++||+|.+..++.|++++..           |  ...++||+||||||||++|+++|+++...             
T Consensus       117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-------------  183 (364)
T TIGR01242       117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------------  183 (364)
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-------------
Confidence            345669999999999999988741           1  13479999999999999999999986322             


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG--  486 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe--  486 (629)
                             ++.+.......  ..+.+..+.+...+.......+.||||||+|.+.           ...+..+..++..  
T Consensus       184 -------~~~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld  254 (364)
T TIGR01242       184 -------FIRVVGSELVR--KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD  254 (364)
T ss_pred             -------EEecchHHHHH--HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence                   23332211100  0011111111122222222345699999999983           2334455555432  


Q ss_pred             -c--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742          487 -Y--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN  554 (629)
Q Consensus       487 -~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD  554 (629)
                       +  ...+.||++||.++.+++++++  |+ ..+.|+.|+.++..+++...+.+..+. .+..+..|++.+.|-
T Consensus       255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~  327 (364)
T TIGR01242       255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGA  327 (364)
T ss_pred             CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCC
Confidence             2  3567899999999999999986  55 478999999999999998877554332 112467788777653

Many proteins may score above the trusted cutoff because an internal

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.9e-14  Score=155.44  Aligned_cols=219  Identities=16%  Similarity=0.153  Sum_probs=147.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHH----HcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELV----VDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L----~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .-|-|   +.+.+.+..+..+...+    ..+...++++|||||||||++++.+++++.....               ..
T Consensus        12 ~~~iP---~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~---------------~~   73 (366)
T COG1474          12 EDYIP---EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA---------------NV   73 (366)
T ss_pred             CCCCc---ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc---------------cC
Confidence            34555   44777777766665555    4555557999999999999999999999854421               11


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHH-------------hc--cCcCCCCeEEEEEccchhhHHHHHHHHH---HHhcc
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDN-------------LA--ITPEVSNAMIVIYEVDKAAEHIQYLIKW---IMDGY  487 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~-------------~~--~~~~~~~kVIIIDEID~Ls~~~q~aLlr---ilEe~  487 (629)
                      .+++|||....+..+++..+++.+.+.             +.  .......-||+|||+|.|.......|+.   ..+..
T Consensus        74 ~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~  153 (366)
T COG1474          74 EVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN  153 (366)
T ss_pred             ceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc
Confidence            278999976666555555555543200             00  0001122399999999996553344444   44444


Q ss_pred             CCCcEEEEEecCCc---cchHHHhhcce--EeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHH---HHccCCHHH
Q 036742          488 TDSCKLILCCEDDV---DIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIA---TKAKQNLRK  557 (629)
Q Consensus       488 ~~~~~~ILitN~~~---~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia---~~s~GDiR~  557 (629)
                      ...+.+|+++|+..   .+++.+++++.  .|.|+||+.+|+..||...+..  ..-.+++++++.++   ...+||.|.
T Consensus       154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~  233 (366)
T COG1474         154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARK  233 (366)
T ss_pred             ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHH
Confidence            34456777888764   37888999874  5889999999999999988763  22356777877766   446789999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCchhHHHHH
Q 036742          558 AIMALEACKALNYPFADDQPIPLGWEEVL  586 (629)
Q Consensus       558 AInlLq~~~~~~~~~~~~~~~~~~~ek~l  586 (629)
                      ||.+|..+...+..-...+.....+.++.
T Consensus       234 aidilr~A~eiAe~~~~~~v~~~~v~~a~  262 (366)
T COG1474         234 AIDILRRAGEIAEREGSRKVSEDHVREAQ  262 (366)
T ss_pred             HHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence            99999998777765444554555555443

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=6.7e-15  Score=165.66  Aligned_cols=184  Identities=20%  Similarity=0.198  Sum_probs=122.0

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHH----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVV----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT  415 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~  415 (629)
                      .+-|..-++|+||.|.++++..|.+-++          .|-  -.+||||||||||||.+|+|+|.++.-..+       
T Consensus       662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~Fl-------  734 (953)
T KOG0736|consen  662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFL-------  734 (953)
T ss_pred             CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEE-------
Confidence            3445566789999999999999998885          222  237999999999999999999999742211       


Q ss_pred             cccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-------------HHHHHHHH
Q 036742          416 QVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-------------HIQYLIKW  482 (629)
Q Consensus       416 ~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-------------~~q~aLlr  482 (629)
                           .+.....  +|.+.+        +.-.++++.|..+...++||||+||+|.+.+             .....|+.
T Consensus       735 -----SVKGPEL--LNMYVG--------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA  799 (953)
T KOG0736|consen  735 -----SVKGPEL--LNMYVG--------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA  799 (953)
T ss_pred             -----eecCHHH--HHHHhc--------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence                 0001000  111111        2223444556666677789999999999933             34555666


Q ss_pred             HHhccC----CCcEEEEEecCCccchHHHhh--cce-EeeccCCCHHHHH-HHHHHHHHhcCCCCCHHH-HHHHHHHccC
Q 036742          483 IMDGYT----DSCKLILCCEDDVDIIESVKT--HCK-VIKVDPPVTHEIM-EVLIQIARKEDFDLSMTF-AAKIATKAKQ  553 (629)
Q Consensus       483 ilEe~~----~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~ppt~eei~-~iL~~i~~kegl~is~e~-L~~Ia~~s~G  553 (629)
                      -|+...    ..+-||.+||+++.|+++|.+  ||- .+++.+..+++-. .+|+.+.++  +.+++++ +..||+.|.-
T Consensus       800 ELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~  877 (953)
T KOG0736|consen  800 ELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPP  877 (953)
T ss_pred             HhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCc
Confidence            666544    334466689999999999998  554 4666777666655 445444444  5555554 8888888765


Q ss_pred             CH
Q 036742          554 NL  555 (629)
Q Consensus       554 Di  555 (629)
                      ++
T Consensus       878 ~~  879 (953)
T KOG0736|consen  878 NM  879 (953)
T ss_pred             CC
Confidence            44

>PRK09087 hypothetical protein; Validated

Probab=99.63  E-value=8.5e-15  Score=148.40  Aligned_cols=171  Identities=12%  Similarity=0.177  Sum_probs=125.7

Q ss_pred             CCCcccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          356 SLNGFIC---HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       356 tfddIiG---~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      +|++++.   +..++..+.+|.. ...+.++|+||+|||||||+++++... +.                     .+++.
T Consensus        19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-~~---------------------~~i~~   75 (226)
T PRK09087         19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-DA---------------------LLIHP   75 (226)
T ss_pred             ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-CC---------------------EEecH
Confidence            7899884   5667777777653 224569999999999999999998763 21                     23333


Q ss_pred             ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc----chHHH
Q 036742          433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD----IIESV  507 (629)
Q Consensus       433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~----I~~aL  507 (629)
                      .. .+     .+.+....          ..+|+|||+|.+.. .+..|..+++. +..+..+|++++....    ..+.|
T Consensus        76 ~~-~~-----~~~~~~~~----------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL  138 (226)
T PRK09087         76 NE-IG-----SDAANAAA----------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDL  138 (226)
T ss_pred             HH-cc-----hHHHHhhh----------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccH
Confidence            21 00     01111111          13799999998742 34455556543 2346778888876433    47899


Q ss_pred             hhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          508 KTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       508 rSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      +||+   .++.+.+|+.+++.++|++.+...++.++++++++|++.+.|++|.++.+|..+.
T Consensus       139 ~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~  200 (226)
T PRK09087        139 KSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD  200 (226)
T ss_pred             HHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999   8999999999999999999999999999999999999999999999998776553

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.61  E-value=4.1e-14  Score=153.40  Aligned_cols=233  Identities=15%  Similarity=0.173  Sum_probs=160.8

Q ss_pred             CCCcccc---cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          356 SLNGFIC---HRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       356 tfddIiG---~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +|++++.   +.-+......|....  ..+.++||||.|+|||+|++|++.+......               ...++++
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~---------------~a~v~y~  149 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP---------------NARVVYL  149 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC---------------CceEEec
Confidence            6777763   455666677776643  3668999999999999999999998753321               2236666


Q ss_pred             ecccchh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhccC-CCcEEEEEecCCcc---
Q 036742          431 NVNLQAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGYT-DSCKLILCCEDDVD---  502 (629)
Q Consensus       431 nas~~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~~-~~~~~ILitN~~~~---  502 (629)
                      .+.....  +..+..+.+.++.+.|      ...+++||||+.+..  ..++.|..+++... .+..+|+++..+..   
T Consensus       150 ~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~  223 (408)
T COG0593         150 TSEDFTNDFVKALRDNEMEKFKEKY------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN  223 (408)
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHhh------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence            6543221  1111112222333333      224899999999954  34555555554322 34478888877554   


Q ss_pred             -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                       +.+.|+||+   ..+.+.+|+.+.+..+|+..+...++.++++++.+|+.....|+|.+..+|..+....... ....+
T Consensus       224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~-~~~iT  302 (408)
T COG0593         224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFT-KRAIT  302 (408)
T ss_pred             cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-CccCc
Confidence             578999997   6899999999999999999999999999999999999999999999998887655433211 11222


Q ss_pred             chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742          579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQK  611 (629)
Q Consensus       579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~  611 (629)
                      ...+.+++.++....-. -+++.|.+++++.|.
T Consensus       303 i~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~  334 (408)
T COG0593         303 IDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYN  334 (408)
T ss_pred             HHHHHHHHHHhhccccc-CCHHHHHHHHHHHhC
Confidence            24445666665554334 788999999988775

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.61  E-value=6.3e-15  Score=164.51  Aligned_cols=178  Identities=11%  Similarity=0.116  Sum_probs=116.2

Q ss_pred             hhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742          349 ADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT  415 (629)
Q Consensus       349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~  415 (629)
                      .+.+.+.+|+||+|.+..++.|++.+..           |  ..+++|||||||||||++|+++|+++..... .     
T Consensus       173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~-~-----  246 (512)
T TIGR03689       173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG-A-----  246 (512)
T ss_pred             eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccc-c-----
Confidence            3778889999999999999999888741           1  2347999999999999999999999732211 0     


Q ss_pred             cccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH------------HHHH
Q 036742          416 QVLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE------------HIQY  478 (629)
Q Consensus       416 ~v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~------------~~q~  478 (629)
                          .......++.+....    ..+.   ....++.+...... .....+.||||||+|.+..            ...+
T Consensus       247 ----~~~~~~~fl~v~~~eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~  319 (512)
T TIGR03689       247 ----ETGDKSYFLNIKGPELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP  319 (512)
T ss_pred             ----ccCCceeEEeccchhhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence                000011122222111    1111   11122222211111 1223457999999999832            1234


Q ss_pred             HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCC
Q 036742          479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLS  540 (629)
Q Consensus       479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is  540 (629)
                      .|+..|+...  .++.+|++||.++.|+++|++  |+ ..|+|++|+.++..++++.++.. .+.++
T Consensus       320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~  385 (512)
T TIGR03689       320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD  385 (512)
T ss_pred             HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence            5666666443  567788899999999999998  77 46999999999999999988754 35553

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.61  E-value=3.8e-14  Score=149.20  Aligned_cols=179  Identities=10%  Similarity=0.157  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHcCCCCeEE-EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc-ceEEEecccchhhHHHH
Q 036742          365 HEAQLLKELVVDGNCPHIL-IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA-HHVELNVNLQANAKYAL  442 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~p~IL-L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~-~vleInas~~~~~k~~l  442 (629)
                      .+++.|++.++.|...|++ |+|+.|+||+++|+.+++.+.|.....        +...... .+..++.. +..   +-
T Consensus         3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--------~~~~~~p~n~~~~d~~-g~~---i~   70 (299)
T PRK07132          3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--------LNEQELPANIILFDIF-DKD---LS   70 (299)
T ss_pred             hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--------CCCCCCCcceEEeccC-CCc---CC
Confidence            4678899999999988865 999999999999999999987743100        0000011 12333211 111   12


Q ss_pred             HHHHHHHHHHhccCc-C-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCC
Q 036742          443 MGLVKEIRDNLAITP-E-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV  520 (629)
Q Consensus       443 ~~~lrei~~~~~~~~-~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt  520 (629)
                      .+.++++.+.+...+ . +..+|+|||++|.|+..++++|++++|+++..+.|||+|+.+..+.++|+|||+++.|.+++
T Consensus        71 vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~  150 (299)
T PRK07132         71 KSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD  150 (299)
T ss_pred             HHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence            356777777776665 2 46789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      .+++..+|...    +  ++++....++..++ ++.+|+.++
T Consensus       151 ~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~  185 (299)
T PRK07132        151 QQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYI  185 (299)
T ss_pred             HHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHH
Confidence            99999888642    3  56666666666666 488877765

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.9e-14  Score=161.23  Aligned_cols=179  Identities=17%  Similarity=0.145  Sum_probs=129.1

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH-------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV-------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~-------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+++|+.|.+.+++.+++.+.             .....++|||||||||||++|+++|.++ +..            
T Consensus       237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~------------  303 (494)
T COG0464         237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSR------------  303 (494)
T ss_pred             CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCe------------
Confidence            34677999999999988888774             1223389999999999999999999986 332            


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh--c
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD--G  486 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE--e  486 (629)
                             ++.+..++..  ...+.+.-+.+...|........+||||||+|.+.           ..+.+.|+..++  +
T Consensus       304 -------fi~v~~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e  374 (494)
T COG0464         304 -------FISVKGSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE  374 (494)
T ss_pred             -------EEEeeCHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC
Confidence                   3444443111  11222333444444544555667899999999992           246667777775  3


Q ss_pred             cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccC
Q 036742          487 YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATKAKQ  553 (629)
Q Consensus       487 ~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~s~G  553 (629)
                      ....+.+|.+||.++.+++++.+  |+ .++.|++|+.++..++++..+...+.. ..+-.+..+++.+.|
T Consensus       375 ~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~  445 (494)
T COG0464         375 KAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG  445 (494)
T ss_pred             ccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence            33556688899999999999999  88 478999999999999999888765554 345567788887665

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.60  E-value=1.1e-14  Score=170.39  Aligned_cols=174  Identities=20%  Similarity=0.167  Sum_probs=121.5

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+.+++.|++++.-           |  ...++|||||||||||++|+++|+++. ..            
T Consensus       448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-~~------------  514 (733)
T TIGR01243       448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-AN------------  514 (733)
T ss_pred             cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-CC------------
Confidence            345789999999999999988741           1  223799999999999999999999963 32            


Q ss_pred             cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------HHHHHHHHH
Q 036742          420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------HIQYLIKWI  483 (629)
Q Consensus       420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------~~q~aLlri  483 (629)
                             ++.+.+++    +.+..   ...++.+   |.......++||||||||.+..            ...+.|+..
T Consensus       515 -------fi~v~~~~l~~~~vGes---e~~i~~~---f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~  581 (733)
T TIGR01243       515 -------FIAVRGPEILSKWVGES---EKAIREI---FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE  581 (733)
T ss_pred             -------EEEEehHHHhhcccCcH---HHHHHHH---HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH
Confidence                   34554421    11111   1222322   2222334567999999999832            344556666


Q ss_pred             Hhc--cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHccCC
Q 036742          484 MDG--YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSM-TFAAKIATKAKQN  554 (629)
Q Consensus       484 lEe--~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~-e~L~~Ia~~s~GD  554 (629)
                      |+.  ...++.||++||.++.|++++++  || ..+.|+.|+.++..++++....+  +.+.+ ..+..|++.+.|-
T Consensus       582 ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~  656 (733)
T TIGR01243       582 MDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGY  656 (733)
T ss_pred             hhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCC
Confidence            663  23567788899999999999996  88 57889999999999999866554  44433 3478888887653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.7e-14  Score=156.40  Aligned_cols=189  Identities=16%  Similarity=0.153  Sum_probs=130.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      +.-++..++||.|.+.+++.|.+++.            +....++||.||||+|||.|++|||.|. +..          
T Consensus       145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-~at----------  213 (428)
T KOG0740|consen  145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-GAT----------  213 (428)
T ss_pred             ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-cce----------
Confidence            33445555999999999999988884            2334579999999999999999999996 433          


Q ss_pred             cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHh--------
Q 036742          418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMD--------  485 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilE--------  485 (629)
                               ++.|.++...+.  .+.+.-+.+...|.++...++.||||||||.+..    ..++.-+++..        
T Consensus       214 ---------ff~iSassLtsK--~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~  282 (428)
T KOG0740|consen  214 ---------FFNISASSLTSK--YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG  282 (428)
T ss_pred             ---------EeeccHHHhhhh--ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc
Confidence                     345555321110  1111123333445555566677999999999932    22222222221        


Q ss_pred             ---ccCCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHH
Q 036742          486 ---GYTDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRK  557 (629)
Q Consensus       486 ---e~~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~  557 (629)
                         ...+.+.+|.+||.++.+++++++|+. ++.++.|+.+....++.+.+.+.+..+.+..+..|++.+.|    ||..
T Consensus       283 ~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~  362 (428)
T KOG0740|consen  283 KNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA  362 (428)
T ss_pred             ccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence               122456778899999999999999996 45577788888888899888888788888899999988654    5544


Q ss_pred             HHH
Q 036742          558 AIM  560 (629)
Q Consensus       558 AIn  560 (629)
                      ++.
T Consensus       363 l~k  365 (428)
T KOG0740|consen  363 LCK  365 (428)
T ss_pred             HHH
Confidence            433

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.2e-14  Score=144.23  Aligned_cols=184  Identities=18%  Similarity=0.202  Sum_probs=132.0

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW  413 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~  413 (629)
                      +.++|....+.+-+.|.+..++.+++.+.-           |  ...++|||||||+|||.+|+++|....|.       
T Consensus       136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~-------  208 (404)
T KOG0728|consen  136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------  208 (404)
T ss_pred             HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE-------
Confidence            356777777788888999999999998851           1  23479999999999999999999886444       


Q ss_pred             CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHH
Q 036742          414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKW  482 (629)
Q Consensus       414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlr  482 (629)
                                   ++.+..+.  -....+.+--+.+++.|..+....+.|||+||||.+.           .+.|..++.
T Consensus       209 -------------firvsgse--lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle  273 (404)
T KOG0728|consen  209 -------------FIRVSGSE--LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE  273 (404)
T ss_pred             -------------EEEechHH--HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH
Confidence                         33333321  1112223334445556666666777899999999992           356666665


Q ss_pred             HHhc-----cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742          483 IMDG-----YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ  553 (629)
Q Consensus       483 ilEe-----~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G  553 (629)
                      +++.     ...++.+|++||+.+-++++|.+-.   ..|+|++|+.+...++|+-...+.++.  .. .+..|++...|
T Consensus       274 llnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~--rgi~l~kiaekm~g  351 (404)
T KOG0728|consen  274 LLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT--RGINLRKIAEKMPG  351 (404)
T ss_pred             HHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh--cccCHHHHHHhCCC
Confidence            5542     3477899999999999999998754   479999999999999998777665442  22 26677777655


Q ss_pred             C
Q 036742          554 N  554 (629)
Q Consensus       554 D  554 (629)
                      .
T Consensus       352 a  352 (404)
T KOG0728|consen  352 A  352 (404)
T ss_pred             C
Confidence            3

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.57  E-value=1e-13  Score=147.26  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=79.8

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      .||||||++.|.-++..+|.+.+|.. -...+||+||+            ++-|+..|..||.+|.-.||+.++++++|.
T Consensus       280 GVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~  358 (398)
T PF06068_consen  280 GVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILK  358 (398)
T ss_dssp             -EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHH
T ss_pred             ceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHH
Confidence            39999999999999999999999842 22346778884            334778999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 036742          530 QIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACK  566 (629)
Q Consensus       530 ~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~  566 (629)
                      ..|+.|++.+++++++.|.... ...+|.|+++|..+.
T Consensus       359 iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~  396 (398)
T PF06068_consen  359 IRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS  396 (398)
T ss_dssp             HHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred             hhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence            9999999999999999998764 578999999998764

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00763 lon ATP-dependent protease La

Probab=99.57  E-value=2e-14  Score=169.19  Aligned_cols=174  Identities=13%  Similarity=0.180  Sum_probs=116.8

Q ss_pred             CcccccHHHHHHHHHHHH----cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVV----DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      ++++|++++++.+.+++.    .+  ..+++||+||||||||++|++||+.+... +                   +.++
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-~-------------------~~i~  379 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK-F-------------------VRFS  379 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-e-------------------EEEe
Confidence            358899999999998774    12  34579999999999999999999997432 2                   2222


Q ss_pred             cccchhhHH-------HHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH----HHHHHHHHHhc-----c--------
Q 036742          432 VNLQANAKY-------ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH----IQYLIKWIMDG-----Y--------  487 (629)
Q Consensus       432 as~~~~~k~-------~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~----~q~aLlrilEe-----~--------  487 (629)
                      .........       .+......+.+.+... ...+.||||||||.+..+    ..++|+.+++.     +        
T Consensus       380 ~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~  458 (775)
T TIGR00763       380 LGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVP  458 (775)
T ss_pred             CCCcccHHHHcCCCCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCce
Confidence            110000000       0000000111111111 112349999999999653    34778887763     1        


Q ss_pred             --CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHHcc
Q 036742          488 --TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RK-----EDFDLSMTFAAKIATKAK  552 (629)
Q Consensus       488 --~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~k-----egl~is~e~L~~Ia~~s~  552 (629)
                        ..++.||+|||..+.|+++|++||.+|.|++|+.++...++++.+     ..     +++.++++++..|++...
T Consensus       459 ~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~  535 (775)
T TIGR00763       459 FDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT  535 (775)
T ss_pred             eccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence              145678999999999999999999999999999999988887654     22     245789999999988543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.57  E-value=2.3e-13  Score=142.83  Aligned_cols=107  Identities=19%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      .||||||++.|.-+++.+|.+.||.. -...+||++|.            |+-|+..|..|+.+|.-.||+.+++++||.
T Consensus       293 GVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~  371 (450)
T COG1224         293 GVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIR  371 (450)
T ss_pred             ceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHH
Confidence            39999999999999999999999842 12346677775            455889999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcC
Q 036742          530 QIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALN  569 (629)
Q Consensus       530 ~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~  569 (629)
                      ..|..+++.++++++++|+... ...+|.|+++|.-+...+
T Consensus       372 iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA  412 (450)
T COG1224         372 IRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIA  412 (450)
T ss_pred             HhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHH
Confidence            9999999999999999999874 578999999998554433

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.56  E-value=8.8e-14  Score=165.22  Aligned_cols=208  Identities=13%  Similarity=0.158  Sum_probs=148.9

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ..++++.+|..++.++|+++.+..+.+.|..+..++++|+||||||||++|+++|..+.....+          ......
T Consensus       161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p----------~~l~~~  230 (852)
T TIGR03346       161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP----------ESLKNK  230 (852)
T ss_pred             hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc----------hhhcCC
Confidence            3477899999999999999999999999988888899999999999999999999987432210          011122


Q ss_pred             ceEEEecccc-hh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEE
Q 036742          426 HHVELNVNLQ-AN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLI  494 (629)
Q Consensus       426 ~vleInas~~-~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~I  494 (629)
                      .++.++.... .+  ........++.+......  ...+.||||||+|.+..        ++.+.|+..++  .....+|
T Consensus       231 ~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~I  306 (852)
T TIGR03346       231 RLLALDMGALIAGAKYRGEFEERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCI  306 (852)
T ss_pred             eEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEE
Confidence            3445443210 01  111223344444443321  12356999999999952        35566666654  3557788


Q ss_pred             EEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742          495 LCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKAI  559 (629)
Q Consensus       495 LitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~AI  559 (629)
                      .+|+..+     .+++++.+||..|.+..|+.++...+|..+..+    .++.+.++++..++.++.+.      +.+||
T Consensus       307 gaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi  386 (852)
T TIGR03346       307 GATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI  386 (852)
T ss_pred             EeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence            8887653     368999999999999999999999998876543    45678899999999888754      56899


Q ss_pred             HHHHHHHh
Q 036742          560 MALEACKA  567 (629)
Q Consensus       560 nlLq~~~~  567 (629)
                      .+|+.+++
T Consensus       387 dlld~a~a  394 (852)
T TIGR03346       387 DLIDEAAA  394 (852)
T ss_pred             HHHHHHHH
Confidence            99987654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.56  E-value=4.1e-13  Score=138.89  Aligned_cols=197  Identities=13%  Similarity=0.144  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      ..+++.+..++..|.  ++||.||||||||++|+++|..+ +..                   ++.+++........++.
T Consensus         8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l-g~~-------------------~~~i~~~~~~~~~dllg   65 (262)
T TIGR02640         8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR-DRP-------------------VMLINGDAELTTSDLVG   65 (262)
T ss_pred             HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh-CCC-------------------EEEEeCCccCCHHHHhh
Confidence            445566677777654  79999999999999999999976 443                   34444422111111110


Q ss_pred             H--------HHHHHHH----H-------hcc----CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------------
Q 036742          444 G--------LVKEIRD----N-------LAI----TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------  488 (629)
Q Consensus       444 ~--------~lrei~~----~-------~~~----~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------  488 (629)
                      .        .+.....    .       +..    .....+.+|+|||++.+.++.++.|+.++++..            
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~  145 (262)
T TIGR02640        66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRY  145 (262)
T ss_pred             hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCce
Confidence            0        0111100    0       000    000123599999999999999999999997531            


Q ss_pred             ----CCcEEEEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc-------
Q 036742          489 ----DSCKLILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK-------  552 (629)
Q Consensus       489 ----~~~~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~-------  552 (629)
                          ...++|+|+|...     .+.++|.+||..+.+..|+.++..++|...+     .++++.++.|++...       
T Consensus       146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~  220 (262)
T TIGR02640       146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGD  220 (262)
T ss_pred             EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCC
Confidence                2567899999752     3689999999999999999999999988653     456777777665431       


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          553 ---QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       553 ---GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                         -.+|.+|.++..++..+.   .....+.++.+++.++.
T Consensus       221 ~~~~~~r~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  258 (262)
T TIGR02640       221 EITSGLRASLMIAEVATQQDI---PVDVDDEDFVDLCIDIL  258 (262)
T ss_pred             ccCCcHHHHHHHHHHHHHcCC---CCCCCcHHHHHHHHHHh
Confidence               137888888888776643   22234455555554443

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.1e-14  Score=144.15  Aligned_cols=189  Identities=12%  Similarity=0.160  Sum_probs=129.6

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      +.-...+..|+.|.++.++.|++.+..           |  ...++|+|||||||||.+|+++|+.. .. +        
T Consensus       169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-da-c--------  238 (435)
T KOG0729|consen  169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-DA-C--------  238 (435)
T ss_pred             ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-Cc-e--------
Confidence            333456789999999999999998862           2  23489999999999999999999874 22 1        


Q ss_pred             ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742          417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD  485 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE  485 (629)
                                ++.+-.+.  -..+.+.+-.+.+++.|.......-+|||+||||.+.           .++|..++.++.
T Consensus       239 ----------firvigse--lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~  306 (435)
T KOG0729|consen  239 ----------FIRVIGSE--LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN  306 (435)
T ss_pred             ----------EEeehhHH--HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHH
Confidence                      22222221  1112233344555556666665566799999999982           356666666665


Q ss_pred             c-----cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHcc----
Q 036742          486 G-----YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAK----  552 (629)
Q Consensus       486 e-----~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~----  552 (629)
                      .     +..++.++++||+++.++++|.+-.   ..++|.-|+.+-...|++-++..  +.+..++ .+.|+++|.    
T Consensus       307 qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstg  384 (435)
T KOG0729|consen  307 QLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTG  384 (435)
T ss_pred             hccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcc
Confidence            3     3477889999999999999999754   47999999888777777655544  3334443 556777764    


Q ss_pred             CCHHHHHHHH
Q 036742          553 QNLRKAIMAL  562 (629)
Q Consensus       553 GDiR~AInlL  562 (629)
                      .++|....-.
T Consensus       385 aeirsvctea  394 (435)
T KOG0729|consen  385 AEIRSVCTEA  394 (435)
T ss_pred             hHHHHHHHHh
Confidence            4666655443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.55  E-value=2.1e-13  Score=161.71  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=148.1

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      ..+++.+|..+++++|+++.++.+.+.|.....+++||+||||||||++|+++|..+....++          .......
T Consensus       167 ~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp----------~~l~~~~  236 (857)
T PRK10865        167 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----------EGLKGRR  236 (857)
T ss_pred             hHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc----------hhhCCCE
Confidence            466889999999999999999999999988888899999999999999999999987432210          0111223


Q ss_pred             eEEEeccc-chh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEE
Q 036742          427 HVELNVNL-QAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLIL  495 (629)
Q Consensus       427 vleInas~-~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~IL  495 (629)
                      ++.++... ..+  ....+.+.++.+......  ...+.||||||+|.+..        ++++.|...++  .....+|.
T Consensus       237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Ig  312 (857)
T PRK10865        237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVG  312 (857)
T ss_pred             EEEEehhhhhhccchhhhhHHHHHHHHHHHHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEE
Confidence            44544321 111  111233444544443221  12456999999999953        35777777775  35677888


Q ss_pred             EecCCcc-----chHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHH
Q 036742          496 CCEDDVD-----IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIM  560 (629)
Q Consensus       496 itN~~~~-----I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AIn  560 (629)
                      +|+..+.     +++++.+||..|.+..|+.++...+|+.+..+    .++.++++++...+..+++.+      .+|+.
T Consensus       313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~  392 (857)
T PRK10865        313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID  392 (857)
T ss_pred             cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHH
Confidence            8877653     78999999999999999999999988776543    356788999888877776543      57888


Q ss_pred             HHHHHHh
Q 036742          561 ALEACKA  567 (629)
Q Consensus       561 lLq~~~~  567 (629)
                      ++..++.
T Consensus       393 LiD~aaa  399 (857)
T PRK10865        393 LIDEAAS  399 (857)
T ss_pred             HHHHHhc
Confidence            8887654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.54  E-value=1.3e-13  Score=146.97  Aligned_cols=148  Identities=15%  Similarity=0.148  Sum_probs=104.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc----cchhhHHHHHHHHHHHHHHhccC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN----LQANAKYALMGLVKEIRDNLAIT  456 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas----~~~~~k~~l~~~lrei~~~~~~~  456 (629)
                      .++||||||||||.+|++||+++ +..                   ++.+++.    .+.|..   +..+++....+...
T Consensus       150 gllL~GPPGcGKTllAraiA~el-g~~-------------------~i~vsa~eL~sk~vGEs---Ek~IR~~F~~A~~~  206 (413)
T PLN00020        150 ILGIWGGKGQGKSFQCELVFKKM-GIE-------------------PIVMSAGELESENAGEP---GKLIRQRYREAADI  206 (413)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHc-CCC-------------------eEEEEHHHhhcCcCCcH---HHHHHHHHHHHHHH
Confidence            68899999999999999999997 433                   3555552    122221   23344443332221


Q ss_pred             --cCCCCeEEEEEccchhhH-----------HH-HHHHHHHHhc--------------cCCCcEEEEEecCCccchHHHh
Q 036742          457 --PEVSNAMIVIYEVDKAAE-----------HI-QYLIKWIMDG--------------YTDSCKLILCCEDDVDIIESVK  508 (629)
Q Consensus       457 --~~~~~kVIIIDEID~Ls~-----------~~-q~aLlrilEe--------------~~~~~~~ILitN~~~~I~~aLr  508 (629)
                        ...+.+||||||||.+..           .. ...|+.+++.              ....+.||.|||+++.|+++|+
T Consensus       207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl  286 (413)
T PLN00020        207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI  286 (413)
T ss_pred             hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence              234678999999998832           11 1345555542              2355788999999999999999


Q ss_pred             h--cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742          509 T--HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN  554 (629)
Q Consensus       509 S--R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD  554 (629)
                      +  |+-.+ |..|+.+++.+||+.++.+.+  ++...+..|+....|-
T Consensus       287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq  331 (413)
T PLN00020        287 RDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ  331 (413)
T ss_pred             CCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence            9  88664 347999999999999888765  4678888899888764

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.53  E-value=7.8e-14  Score=165.14  Aligned_cols=201  Identities=18%  Similarity=0.221  Sum_probs=147.3

Q ss_pred             hhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      +++-+...++.++|.++.++.+.++|.....+++||+||||||||++|+.+|..+.......          ......++
T Consensus       170 ~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~----------~l~~~~i~  239 (821)
T CHL00095        170 TKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD----------ILEDKLVI  239 (821)
T ss_pred             HHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh----------hhcCCeEE
Confidence            35556677899999999999999999988888999999999999999999999974322110          11223466


Q ss_pred             EEeccc------chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEE
Q 036742          429 ELNVNL------QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLI  494 (629)
Q Consensus       429 eInas~------~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~I  494 (629)
                      +++...      .+|   ..++.++.+.+....   ..+.||||||+|.+..        .+.+.|...+.  .....+|
T Consensus       240 ~l~~~~l~ag~~~~g---e~e~rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~I  311 (821)
T CHL00095        240 TLDIGLLLAGTKYRG---EFEERLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCI  311 (821)
T ss_pred             EeeHHHHhccCCCcc---HHHHHHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEE
Confidence            666531      122   233445555543321   2346999999998843        35667776665  3567788


Q ss_pred             EEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742          495 LCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIA----RKEDFDLSMTFAAKIATKAKQN------LRKAI  559 (629)
Q Consensus       495 LitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~----~kegl~is~e~L~~Ia~~s~GD------iR~AI  559 (629)
                      .+|+...     ..+++|.+||..+.+..|+.++...+|..+.    ...++.++++++..++..+.+.      +++||
T Consensus       312 gaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai  391 (821)
T CHL00095        312 GATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI  391 (821)
T ss_pred             EeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence            8887654     2578999999999999999999888887654    3456778999999999998764      56899


Q ss_pred             HHHHHHHh
Q 036742          560 MALEACKA  567 (629)
Q Consensus       560 nlLq~~~~  567 (629)
                      .+|+.+++
T Consensus       392 dlld~a~a  399 (821)
T CHL00095        392 DLLDEAGS  399 (821)
T ss_pred             HHHHHHHH
Confidence            99997655

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.53  E-value=3.6e-13  Score=157.18  Aligned_cols=203  Identities=16%  Similarity=0.197  Sum_probs=139.7

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      ++-+-..++.++|.+..+..+.+.|.....+++||+||||||||++|+++|..+.......          ......++.
T Consensus       178 ~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~----------~l~~~~~~~  247 (758)
T PRK11034        178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE----------VMADCTIYS  247 (758)
T ss_pred             HHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc----------hhcCCeEEe
Confidence            4445567789999999999999999887778999999999999999999998763222100          011112233


Q ss_pred             Eeccc-chhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCcEEEEEe
Q 036742          430 LNVNL-QANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       430 Inas~-~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      ++... ..+.  .......++.+...+..   ..+.||||||+|.+.         .++.+.|..+++.  ....+|.+|
T Consensus       248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgAT  322 (758)
T PRK11034        248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST  322 (758)
T ss_pred             ccHHHHhcccchhhhHHHHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecC
Confidence            22210 0000  01122333333332221   234599999999982         2344556666653  567778888


Q ss_pred             cCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCCH------HHHHHHH
Q 036742          498 EDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQNL------RKAIMAL  562 (629)
Q Consensus       498 N~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GDi------R~AInlL  562 (629)
                      +..+     .++++|.+||..|.+.+|+.++...+|+.+..    ..++.++++++..+++++...+      .+|+.+|
T Consensus       323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll  402 (758)
T PRK11034        323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI  402 (758)
T ss_pred             ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence            7654     36899999999999999999999999987643    4578899999999998876544      4899999


Q ss_pred             HHHHh
Q 036742          563 EACKA  567 (629)
Q Consensus       563 q~~~~  567 (629)
                      +.+++
T Consensus       403 dea~a  407 (758)
T PRK11034        403 DEAGA  407 (758)
T ss_pred             HHHHH
Confidence            87764

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.5e-13  Score=138.98  Aligned_cols=173  Identities=20%  Similarity=0.214  Sum_probs=119.4

Q ss_pred             CCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          356 SLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      +.+||.|.+..++.|.+++.           -|  ...++|+|||||||||.+|++.|.+.....               
T Consensus       169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF---------------  233 (424)
T KOG0652|consen  169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF---------------  233 (424)
T ss_pred             cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH---------------
Confidence            45999999999988888873           12  234899999999999999999998753321               


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh---ccC
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD---GYT  488 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE---e~~  488 (629)
                           +.+..-  .-..-.+.+-.+-++..|++.....+.||||||+|.+.           .++|..++.+++   .++
T Consensus       234 -----LKLAgP--QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs  306 (424)
T KOG0652|consen  234 -----LKLAGP--QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS  306 (424)
T ss_pred             -----HHhcch--HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence                 111110  00000111223445567777777778899999999992           356666665554   333


Q ss_pred             --CCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHcc
Q 036742          489 --DSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAK  552 (629)
Q Consensus       489 --~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~  552 (629)
                        ..+.+|.+||+.+-++++|.+..   ..|+|+.|+.+....||+-...+.++  ++++ .+.|++.+.
T Consensus       307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTd  374 (424)
T KOG0652|consen  307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTD  374 (424)
T ss_pred             CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhccc
Confidence              45678999999999999998754   57999999998888888776666544  4443 666776553

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.51  E-value=3.8e-13  Score=155.27  Aligned_cols=192  Identities=17%  Similarity=0.136  Sum_probs=128.1

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ....+|+|+.|.+.+++.|.+++.-           +. .+++||+||||||||++|+++|+++. ..            
T Consensus       146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-~~------------  212 (644)
T PRK10733        146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-VP------------  212 (644)
T ss_pred             hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-CC------------
Confidence            3345678999999888887776641           12 34799999999999999999999863 32            


Q ss_pred             cccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHH
Q 036742          420 PVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIM  484 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlril  484 (629)
                             ++.+++++..... ......++.+.   .......++||||||+|.+..              ...+.|+..|
T Consensus       213 -------f~~is~~~~~~~~~g~~~~~~~~~f---~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~m  282 (644)
T PRK10733        213 -------FFTISGSDFVEMFVGVGASRVRDMF---EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM  282 (644)
T ss_pred             -------EEEEehHHhHHhhhcccHHHHHHHH---HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhh
Confidence                   3445443211100 00011222222   222233567999999999832              2344555556


Q ss_pred             hccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CH
Q 036742          485 DGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NL  555 (629)
Q Consensus       485 Ee~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----Di  555 (629)
                      +.+..  .+.+|++||.++.|++++++  |+ ..+.|+.|+.++..++|+..+.+..+. .+..+..|++.+.|    |+
T Consensus       283 dg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl  361 (644)
T PRK10733        283 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADL  361 (644)
T ss_pred             hcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHH
Confidence            65443  45677899999999999996  77 679999999999999999888764432 12336678888888    77


Q ss_pred             HHHHHHHHHHHh
Q 036742          556 RKAIMALEACKA  567 (629)
Q Consensus       556 R~AInlLq~~~~  567 (629)
                      ..+++.....+.
T Consensus       362 ~~l~~eAa~~a~  373 (644)
T PRK10733        362 ANLVNEAALFAA  373 (644)
T ss_pred             HHHHHHHHHHHH
Confidence            777776655443

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1e-13  Score=155.88  Aligned_cols=179  Identities=20%  Similarity=0.208  Sum_probs=121.6

Q ss_pred             CCCCCcccccHHHHHHHHHHHH-----------cCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVV-----------DGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~-----------~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      -.+|.|+.|.+++++.|.+.+.           .+.+| ++||.||||||||.||+++|.+..-+.+           .+
T Consensus       146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-----------~i  214 (596)
T COG0465         146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-----------SI  214 (596)
T ss_pred             CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce-----------ec
Confidence            3578999999999999998884           22344 8999999999999999999998643322           11


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHHhcc
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIMDGY  487 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlrilEe~  487 (629)
                      .+| .++|+-.  ..+.     ..+|++   |..+....+|||||||+|.+..              ...+.|+--|+.+
T Consensus       215 SGS-~FVemfV--GvGA-----sRVRdL---F~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF  283 (596)
T COG0465         215 SGS-DFVEMFV--GVGA-----SRVRDL---FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF  283 (596)
T ss_pred             cch-hhhhhhc--CCCc-----HHHHHH---HHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence            222 2222211  1221     122332   2233344568999999999922              3566777777877


Q ss_pred             CC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742          488 TD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL  555 (629)
Q Consensus       488 ~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi  555 (629)
                      ..  .+.+|.+||+++-++++|.+  |+ ..|.+..|+.....+||+.++.+-.+. .+-.+..|++.+.|-.
T Consensus       284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfs  355 (596)
T COG0465         284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFS  355 (596)
T ss_pred             CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcc
Confidence            64  44566678999999999987  34 578889999999999999666654443 1223566888876643

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.4e-12  Score=138.56  Aligned_cols=155  Identities=19%  Similarity=0.260  Sum_probs=107.8

Q ss_pred             CCcccccHHHHHHHHHHHH--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          357 LNGFICHRHEAQLLKELVV--------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~--------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      |+++|.++.+...|..+..        ...+.+||||||||||||.+|+-||..- |.++           .+...+.|.
T Consensus       354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-GlDY-----------A~mTGGDVA  421 (630)
T KOG0742|consen  354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GLDY-----------AIMTGGDVA  421 (630)
T ss_pred             cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-CCce-----------ehhcCCCcc
Confidence            7999999998888887774        3345689999999999999999999984 6553           223333343


Q ss_pred             EEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchh---------hHH---HHHHHHHHHhccCCCcEEEE
Q 036742          429 ELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKA---------AEH---IQYLIKWIMDGYTDSCKLIL  495 (629)
Q Consensus       429 eInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~L---------s~~---~q~aLlrilEe~~~~~~~IL  495 (629)
                      .+.+           +-+..+.+.|.-.. ...+-+|||||+|.+         ++.   +.|+|+--.-.-+..+.++|
T Consensus       422 PlG~-----------qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvl  490 (630)
T KOG0742|consen  422 PLGA-----------QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVL  490 (630)
T ss_pred             ccch-----------HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEe
Confidence            2222           12222222232222 234459999999987         222   33333322233456678899


Q ss_pred             EecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh
Q 036742          496 CCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       496 itN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                      ++|.+..++.++-.|+ .+++|+-|-.++...+|...+.+
T Consensus       491 AtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk  530 (630)
T KOG0742|consen  491 ATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK  530 (630)
T ss_pred             ccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence            9999999999999998 68999999999988888776554

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=7e-14  Score=143.14  Aligned_cols=190  Identities=15%  Similarity=0.178  Sum_probs=122.5

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP  414 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~  414 (629)
                      =.+|-.-.+++||.|.+..++.|++.+.           .|  ...+++|||+||||||.||+|+|+......+      
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl------  248 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL------  248 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh------
Confidence            3466666788999999999999999985           22  2338999999999999999999988533321      


Q ss_pred             ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHH
Q 036742          415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWI  483 (629)
Q Consensus       415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlri  483 (629)
                           .++++..           +...+.+--+-+++.|..+......|+||||||.+.           .+.|..++.+
T Consensus       249 -----RvvGseL-----------iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLEL  312 (440)
T KOG0726|consen  249 -----RVVGSEL-----------IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL  312 (440)
T ss_pred             -----hhhhHHH-----------HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHH
Confidence                 1111110           011111111223334444445566799999999992           2456666666


Q ss_pred             Hhc---c--CCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHH----HH
Q 036742          484 MDG---Y--TDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIA----TK  550 (629)
Q Consensus       484 lEe---~--~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia----~~  550 (629)
                      ++.   +  ...+.+|++||..+.++++|.+-.   ..|.|+.|+...-..|+.-...+  +.+..++ ++.++    +.
T Consensus       313 LNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddl  390 (440)
T KOG0726|consen  313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDL  390 (440)
T ss_pred             HHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhccccc
Confidence            553   2  366789999999999999998754   46999999987777666543332  3333322 33333    33


Q ss_pred             ccCCHHHHHHH
Q 036742          551 AKQNLRKAIMA  561 (629)
Q Consensus       551 s~GDiR~AInl  561 (629)
                      ++.||..+..-
T Consensus       391 SGAdIkAictE  401 (440)
T KOG0726|consen  391 SGADIKAICTE  401 (440)
T ss_pred             ccccHHHHHHH
Confidence            55666554443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.47  E-value=6.3e-13  Score=155.85  Aligned_cols=180  Identities=18%  Similarity=0.194  Sum_probs=124.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+.+++.|.+++..             ....++|||||||||||++|+++|+++ +..            
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-~~~------------  239 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-GAY------------  239 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-CCe------------
Confidence            456889999999999999988741             122479999999999999999999987 322            


Q ss_pred             cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHH
Q 036742          420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIM  484 (629)
Q Consensus       420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlril  484 (629)
                             ++.+++..    ..+.   ....++.+....   ....+.||||||+|.+.           ...++.|+.++
T Consensus       240 -------~i~i~~~~i~~~~~g~---~~~~l~~lf~~a---~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~l  306 (733)
T TIGR01243       240 -------FISINGPEIMSKYYGE---SEERLREIFKEA---EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLM  306 (733)
T ss_pred             -------EEEEecHHHhcccccH---HHHHHHHHHHHH---HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHh
Confidence                   35555421    1111   112223322221   12335699999999883           23566788888


Q ss_pred             hccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHH
Q 036742          485 DGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKA  558 (629)
Q Consensus       485 Ee~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is-~e~L~~Ia~~s~GDiR~A  558 (629)
                      +....  .+.+|.+||.++.+++++++  |+ ..+.|..|+.++..++|+..+..  +.+. +..++.+++.+.|....-
T Consensus       307 d~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gad  384 (733)
T TIGR01243       307 DGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGAD  384 (733)
T ss_pred             hccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHH
Confidence            75543  34566689999999999987  55 56889999999999999865543  4443 345888999888865543


Q ss_pred             HH
Q 036742          559 IM  560 (629)
Q Consensus       559 In  560 (629)
                      +.
T Consensus       385 l~  386 (733)
T TIGR01243       385 LA  386 (733)
T ss_pred             HH
Confidence            33

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.47  E-value=6.5e-13  Score=155.89  Aligned_cols=172  Identities=12%  Similarity=0.156  Sum_probs=116.8

Q ss_pred             CcccccHHHHHHHHHHHHc------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVVD------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      .++.|++.+++.|.+|+..      ...+.++|+||||||||++++.+|+.+ +..+                   +.++
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~-------------------~~i~  381 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT-GRKY-------------------VRMA  381 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCE-------------------EEEE
Confidence            3489999999999988862      234579999999999999999999986 3332                   2222


Q ss_pred             cccchhhHHHH-------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH----HHHHHHHHhcc-------------
Q 036742          432 VNLQANAKYAL-------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI----QYLIKWIMDGY-------------  487 (629)
Q Consensus       432 as~~~~~k~~l-------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~----q~aLlrilEe~-------------  487 (629)
                      ....+....+.       ...-..+.+.+... ...+.||||||+|.+....    +.+|+.+++.-             
T Consensus       382 ~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~  460 (784)
T PRK10787        382 LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVD  460 (784)
T ss_pred             cCCCCCHHHhccchhccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccc
Confidence            21111100000       00000111111111 1234599999999997654    58899988741             


Q ss_pred             --CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHc
Q 036742          488 --TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR-----K-----EDFDLSMTFAAKIATKA  551 (629)
Q Consensus       488 --~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~-----k-----egl~is~e~L~~Ia~~s  551 (629)
                        .+++.||+|+|.. .|.++|++||.+|.|.+|+.+++.+|+++.+.     +     ..+.++++++..|++.+
T Consensus       461 ~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y  535 (784)
T PRK10787        461 YDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY  535 (784)
T ss_pred             ccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence              1566788888876 59999999999999999999999988877653     1     13567899999998754

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.47  E-value=4.5e-13  Score=163.06  Aligned_cols=139  Identities=9%  Similarity=0.033  Sum_probs=88.4

Q ss_pred             HHHhccCcCCCCeEEEEEccchhhHH-----HHHHHHHHHhcc-----CCCcEEEEEecCCccchHHHhh--cc-eEeec
Q 036742          450 RDNLAITPEVSNAMIVIYEVDKAAEH-----IQYLIKWIMDGY-----TDSCKLILCCEDDVDIIESVKT--HC-KVIKV  516 (629)
Q Consensus       450 ~~~~~~~~~~~~kVIIIDEID~Ls~~-----~q~aLlrilEe~-----~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F  516 (629)
                      ...|..+...+++||+|||||.+...     ..+.|+..|+..     ..++.||.+||.++.|++||++  |+ ..|.+
T Consensus      1722 r~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~I 1801 (2281)
T CHL00206       1722 TLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1801 (2281)
T ss_pred             HHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEe
Confidence            34455555667899999999999542     245566666532     2456788899999999999998  77 57888


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHccCCH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742          517 DPPVTHEIMEVLIQIARKEDFDLSMT--FAAKIATKAKQNL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIE  588 (629)
Q Consensus       517 ~ppt~eei~~iL~~i~~kegl~is~e--~L~~Ia~~s~GDi-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e  588 (629)
                      +.|+..+..+++..+....++.+..+  .++.+|+.+.|-- +..-+++..++..+...........+++.++..
T Consensus      1802 r~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206       1802 RRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred             CCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            88888777777765555556666543  3788999887643 333344444333332222222223445544443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.4e-12  Score=146.16  Aligned_cols=189  Identities=16%  Similarity=0.117  Sum_probs=129.2

Q ss_pred             CCCCcccccHHHHHHHHHHHHc----------CC---CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVVD----------GN---CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~----------g~---~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..++||.|..++++.|.+.+.-          -+   ..+||||||||||||.||-++|..+ +..              
T Consensus       664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~--------------  728 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLR--------------  728 (952)
T ss_pred             CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-Cee--------------
Confidence            3579999999999999988851          11   1279999999999999999999985 222              


Q ss_pred             cCCcceEEEecc--cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742          422 ASSAHHVELNVN--LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG--  486 (629)
Q Consensus       422 ~sS~~vleInas--~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe--  486 (629)
                           ++-+..-  ...++. ..++.+|+   .|..+...++||+|+||+|.+.           ..+.|.|+.-|+.  
T Consensus       729 -----fisvKGPElL~KyIG-aSEq~vR~---lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E  799 (952)
T KOG0735|consen  729 -----FISVKGPELLSKYIG-ASEQNVRD---LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE  799 (952)
T ss_pred             -----EEEecCHHHHHHHhc-ccHHHHHH---HHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc
Confidence                 2222110  001110 11233333   3444455667999999999993           3577888888873  


Q ss_pred             cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHHHH
Q 036742          487 YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRKAI  559 (629)
Q Consensus       487 ~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~AI  559 (629)
                      ...++.++.+|.+++.|+++|.+-.   ..+..+.|+..+..++|+.+....-+. ++..++.++..+.|    |+...+
T Consensus       800 gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll  878 (952)
T KOG0735|consen  800 GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLL  878 (952)
T ss_pred             ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHH
Confidence            3466777778888999999999844   357778899999999998877653222 34458888888765    565555


Q ss_pred             HHHHHHHhc
Q 036742          560 MALEACKAL  568 (629)
Q Consensus       560 nlLq~~~~~  568 (629)
                      -..+.++..
T Consensus       879 ~~A~l~avh  887 (952)
T KOG0735|consen  879 YNAQLAAVH  887 (952)
T ss_pred             HHHHHHHHH
Confidence            555554443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.45  E-value=1.9e-12  Score=153.44  Aligned_cols=185  Identities=19%  Similarity=0.256  Sum_probs=131.5

Q ss_pred             CcccccHHHHHHHHHHHHc---C----CCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVD---G----NCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~---g----~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||+++++.+.+.+..   |    ..|  .+||+||+|||||.+|+++|..+++...                 .++
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~-----------------~~~  628 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ-----------------NLI  628 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc-----------------ceE
Confidence            5689999999999888852   1    112  4899999999999999999999875421                 134


Q ss_pred             EEecccchhh---H-----------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQANA---K-----------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~~---k-----------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++.+.....   .           +.-...+.+...      .....||+||||+.+.++.++.|+.+++...      
T Consensus       629 ~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~G  702 (852)
T TIGR03345       629 TINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEG  702 (852)
T ss_pred             EEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCC
Confidence            4443221100   0           000011111111      1223599999999999999999999998653      


Q ss_pred             -----CCcEEEEEecCCc-----------------------------cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742          489 -----DSCKLILCCEDDV-----------------------------DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       489 -----~~~~~ILitN~~~-----------------------------~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                           .++.||||+|...                             .+.++|.+||.+|.|.+++.+++.+++...+..
T Consensus       703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~  782 (852)
T TIGR03345       703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR  782 (852)
T ss_pred             cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence                 6678999988411                             134678899999999999999999888765432


Q ss_pred             --------cC--CCCCHHHHHHHHHHccC---CHHHHHHHHHHH
Q 036742          535 --------ED--FDLSMTFAAKIATKAKQ---NLRKAIMALEAC  565 (629)
Q Consensus       535 --------eg--l~is~e~L~~Ia~~s~G---DiR~AInlLq~~  565 (629)
                              .+  +.++++++++|++.+.+   +.|.+.+.|+..
T Consensus       783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~  826 (852)
T TIGR03345       783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT  826 (852)
T ss_pred             HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence                    14  46799999999999877   789988888763

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.45  E-value=6e-13  Score=120.88  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=78.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCC
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVS  460 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~  460 (629)
                      |||+||||||||++|+++|+.+ +..                   ++++++...... .......+..+........  .
T Consensus         1 ill~G~~G~GKT~l~~~la~~l-~~~-------------------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~   58 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL-GFP-------------------FIEIDGSELISSYAGDSEQKIRDFFKKAKKSA--K   58 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT-TSE-------------------EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--T
T ss_pred             CEEECcCCCCeeHHHHHHHhhc-ccc-------------------cccccccccccccccccccccccccccccccc--c
Confidence            6899999999999999999996 432                   577777432200 0011223333333221111  3


Q ss_pred             CeEEEEEccchhhHHH-----------HHHHHHHHhccCC---CcEEEEEecCCccchHHHh-hcceE-eec
Q 036742          461 NAMIVIYEVDKAAEHI-----------QYLIKWIMDGYTD---SCKLILCCEDDVDIIESVK-THCKV-IKV  516 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~-----------q~aLlrilEe~~~---~~~~ILitN~~~~I~~aLr-SR~~~-I~F  516 (629)
                      +.||||||+|.+....           .+.|+..++....   .+.+|++||..+.++++|+ +||.. +.|
T Consensus        59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~  130 (132)
T PF00004_consen   59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF  130 (132)
T ss_dssp             SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred             ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence            5799999999996554           7788888887665   4789999999999999999 99854 444

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.43  E-value=9.2e-12  Score=127.84  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=91.3

Q ss_pred             EEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC-------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       463 VIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      ||||||++.|.-+++..|.+.+|.+- ...+||++|.             +..|.+.|..|+.+|.-.+++++++++|+.
T Consensus       299 VLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~  377 (456)
T KOG1942|consen  299 VLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK  377 (456)
T ss_pred             ceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence            99999999999999999999998543 2346677664             344788999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCC
Q 036742          530 QIARKEDFDLSMTFAAKIATK-AKQNLRKAIMALEACKALNY  570 (629)
Q Consensus       530 ~i~~kegl~is~e~L~~Ia~~-s~GDiR~AInlLq~~~~~~~  570 (629)
                      ..++.+++.++++.++.+++. +...+|.++.+|--+...+.
T Consensus       378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak  419 (456)
T KOG1942|consen  378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAK  419 (456)
T ss_pred             HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHH
Confidence            999999999999999999986 46789999999975544433

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=8.6e-13  Score=148.68  Aligned_cols=169  Identities=13%  Similarity=0.141  Sum_probs=119.0

Q ss_pred             CcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      .|-.|.+++++.+.++|.      .-..|.++|+||||+|||+|++.||+.+....                    +.+.
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf--------------------vR~s  382 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF--------------------VRIS  382 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE--------------------EEEe
Confidence            456789999999999885      12235788999999999999999999984332                    2222


Q ss_pred             cccchhhHHHHHHHHHHHHHHhccCcC-----------CCCeEEEEEccchhhH----HHHHHHHHHHhcc---------
Q 036742          432 VNLQANAKYALMGLVKEIRDNLAITPE-----------VSNAMIVIYEVDKAAE----HIQYLIKWIMDGY---------  487 (629)
Q Consensus       432 as~~~~~k~~l~~~lrei~~~~~~~~~-----------~~~kVIIIDEID~Ls~----~~q~aLlrilEe~---------  487 (629)
                      ---.+.     +..+|..+.+|..+-+           ..+.|++|||||.|+.    +-..+|+.+++--         
T Consensus       383 LGGvrD-----EAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhY  457 (782)
T COG0466         383 LGGVRD-----EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHY  457 (782)
T ss_pred             cCcccc-----HHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcc
Confidence            210010     0122233333322221           1244999999999954    4556777776521         


Q ss_pred             ------CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHH-----HHhcC-----CCCCHHHHHHHHHHc
Q 036742          488 ------TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI-----ARKED-----FDLSMTFAAKIATKA  551 (629)
Q Consensus       488 ------~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i-----~~keg-----l~is~e~L~~Ia~~s  551 (629)
                            .+++.||+|+|..+.|..+|+.|+.+|++..|+.+|-..|.+++     ....|     +.++++++..|++..
T Consensus       458 Lev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y  537 (782)
T COG0466         458 LEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY  537 (782)
T ss_pred             ccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence                  16678999999999999999999999999999999988887765     23333     467899998888764

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.42  E-value=3.5e-12  Score=136.28  Aligned_cols=234  Identities=16%  Similarity=0.128  Sum_probs=136.9

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCC-CC-cccccc-cc---CC--
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEK-WP-TQVLVP-VA---SS--  424 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~-~~-~~v~~~-i~---sS--  424 (629)
                      .|..|++|+|+++++..|.-.+......|+||+||||||||++|++++..+.+....... +. ..+.+. ..   ..  
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~   82 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT   82 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence            477899999999999887755542235689999999999999999999987321110000 00 000000 00   00  


Q ss_pred             -----cceEEE--ecccc--hhhHHHHHHHHHHHHHHhccC----cCCCCeEEEEEccchhhHHHHHHHHHHHhccC---
Q 036742          425 -----AHHVEL--NVNLQ--ANAKYALMGLVKEIRDNLAIT----PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---  488 (629)
Q Consensus       425 -----~~vleI--nas~~--~~~k~~l~~~lrei~~~~~~~----~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---  488 (629)
                           ..++.+  ++..+  .|.- .+...+.  ...+...    ....+.+|||||++.+....++.|+..|++..   
T Consensus        83 ~~~~~~p~~~~p~~~t~~~l~G~~-d~~~~l~--~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v  159 (334)
T PRK13407         83 MIERPTPVVDLPLGVTEDRVVGAL-DIERALT--RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV  159 (334)
T ss_pred             ccccCCccccCCCCCCcceeecch-hhhhhhh--cCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence                 000111  11111  0100 0000000  0011111    11223599999999999999999999998542   


Q ss_pred             --------CCcEEEE--EecCCc-cchHHHhhcce-EeeccCCCH-HHHHHHHHHHHHh---------------------
Q 036742          489 --------DSCKLIL--CCEDDV-DIIESVKTHCK-VIKVDPPVT-HEIMEVLIQIARK---------------------  534 (629)
Q Consensus       489 --------~~~~~IL--itN~~~-~I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~k---------------------  534 (629)
                              ...+|++  +.|..+ .+.+++..||. .+.+.++.. ++..++|.+....                     
T Consensus       160 ~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (334)
T PRK13407        160 EREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGR  239 (334)
T ss_pred             EECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHH
Confidence                    1223444  344333 47889999984 566766655 5555555542211                     


Q ss_pred             --------cCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          535 --------EDFDLSMTFAAKIATKAK----QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       535 --------egl~is~e~L~~Ia~~s~----GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                              ..+.++++++.+|++.+.    ...|-.+.++..+++.+..-..+..++.+++.+..-+
T Consensus       240 i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v  306 (334)
T PRK13407        240 ILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA  306 (334)
T ss_pred             HHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence                    235678888888876642    3678888888888777766666777777776555443

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=9e-13  Score=147.83  Aligned_cols=180  Identities=13%  Similarity=0.133  Sum_probs=117.3

Q ss_pred             CcccccHHHHHHHHHHHHcCC------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVVDGN------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      +|-.|.+++++.+.++|.-+.      .+.++|+||||+|||++|+.||+.|...++         .|.+.+-..+.+|.
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf---------RfSvGG~tDvAeIk  481 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF---------RFSVGGMTDVAEIK  481 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE---------EEeccccccHHhhc
Confidence            567899999999999996332      235789999999999999999999854432         12222222222221


Q ss_pred             cccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhcc---------------CCCcE
Q 036742          432 VNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGY---------------TDSCK  492 (629)
Q Consensus       432 as~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~---------------~~~~~  492 (629)
                      ..--.++...-..++..+..     -...+.+++|||||.+..    +-..+|+.+++.-               .+.+.
T Consensus       482 GHRRTYVGAMPGkiIq~LK~-----v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL  556 (906)
T KOG2004|consen  482 GHRRTYVGAMPGKIIQCLKK-----VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL  556 (906)
T ss_pred             ccceeeeccCChHHHHHHHh-----hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence            10000000000011111110     012244999999999943    4456777776521               15567


Q ss_pred             EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHHHHHHHc
Q 036742          493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RKE-----DFDLSMTFAAKIATKA  551 (629)
Q Consensus       493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~ke-----gl~is~e~L~~Ia~~s  551 (629)
                      ||+|+|..+.|.++|+.|+.+|++..|..+|-..|..+++     ...     .++++++++..|++..
T Consensus       557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y  625 (906)
T KOG2004|consen  557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY  625 (906)
T ss_pred             EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence            8999999999999999999999999999999887776653     233     3578888887776553

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.39  E-value=3.2e-11  Score=123.79  Aligned_cols=219  Identities=14%  Similarity=0.118  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC-cceE-EEe----cccch
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS-AHHV-ELN----VNLQA  436 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS-~~vl-eIn----as~~~  436 (629)
                      +..+...+...+..+ .+.++|+||+|+||||+++.++..+.......     +..+....+ ..++ .+.    .....
T Consensus        28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~l~~i~~~lG~~~~~  101 (269)
T TIGR03015        28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERVVA-----AKLVNTRVDAEDLLRMVAADFGLETEG  101 (269)
T ss_pred             HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE-----eeeeCCCCCHHHHHHHHHHHcCCCCCC
Confidence            344555566555543 33588999999999999999999874222100     000000000 0000 000    00000


Q ss_pred             hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---CCcEEEEEecCCc------cchHHH
Q 036742          437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---DSCKLILCCEDDV------DIIESV  507 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---~~~~~ILitN~~~------~I~~aL  507 (629)
                      .....+...+.......  .......||||||+|.+.....+.|+.+.+.-.   ..+.||++.....      .-...+
T Consensus       102 ~~~~~~~~~l~~~l~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l  179 (269)
T TIGR03015       102 RDKAALLRELEDFLIEQ--FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQL  179 (269)
T ss_pred             CCHHHHHHHHHHHHHHH--HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence            00000111111111111  112334599999999998888887776654321   2234455543210      123457


Q ss_pred             hhcc-eEeeccCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH
Q 036742          508 KTHC-KVIKVDPPVTHEIMEVLIQIARKED----FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW  582 (629)
Q Consensus       508 rSR~-~~I~F~ppt~eei~~iL~~i~~keg----l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~  582 (629)
                      .+|+ ..+.+.+++.+++.+++...+...+    ..+++++++.|++.++|++|.+..++..+...++....+.....++
T Consensus       180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v  259 (269)
T TIGR03015       180 RQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEV  259 (269)
T ss_pred             HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence            7775 5788999999999999998877544    4689999999999999999998887776654443333333333455


Q ss_pred             HHHHHHH
Q 036742          583 EEVLIEL  589 (629)
Q Consensus       583 ek~l~ei  589 (629)
                      +.++.++
T Consensus       260 ~~~~~~~  266 (269)
T TIGR03015       260 REVIAEI  266 (269)
T ss_pred             HHHHHHh
Confidence            5544443

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=99.39  E-value=6.9e-11  Score=119.72  Aligned_cols=185  Identities=13%  Similarity=0.160  Sum_probs=140.8

Q ss_pred             HHHHHHHHHcCCCCe-EEEEcCCC-CcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc--hhhHHHH
Q 036742          367 AQLLKELVVDGNCPH-ILIKGQSG-SGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ--ANAKYAL  442 (629)
Q Consensus       367 ~~~Lk~~L~~g~~p~-ILL~GPPG-tGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~--~~~k~~l  442 (629)
                      +..|...++.++..| .||.|..+ .||..++..+++.+.|..           +.......+..+.+...  .....+-
T Consensus         2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----------i~~~~HPD~~~I~pe~~~~~~~~~I~   70 (263)
T PRK06581          2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS-----------IPLENNPDYHFIARETSATSNAKNIS   70 (263)
T ss_pred             hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC-----------cccCCCCCEEEEeccccccccCCccc
Confidence            356888888888775 67999998 999999999999886653           23334455666654321  1112234


Q ss_pred             HHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCH
Q 036742          443 MGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT  521 (629)
Q Consensus       443 ~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~  521 (629)
                      .+.+|++...+...+ .+..+|+|||++|.|+.++.++|++++|+++.++.|||+|..+..++++|+|||+.+.|..+..
T Consensus        71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~  150 (263)
T PRK06581         71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSIL  150 (263)
T ss_pred             HHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCH
Confidence            677888887776665 3567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                      ....++....+.-   -.+...++.|.+...-|....+...+.|
T Consensus       151 ~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~  191 (263)
T PRK06581        151 HAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNL  191 (263)
T ss_pred             HHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            8887777655432   2244567778777766666666555544

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.38  E-value=4.3e-12  Score=148.26  Aligned_cols=168  Identities=16%  Similarity=0.186  Sum_probs=115.4

Q ss_pred             CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||+++++.|.+++...         ...++||+||||||||.+|+++|+.+. ..                   ++
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-~~-------------------~i  517 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-IE-------------------LL  517 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-CC-------------------cE
Confidence            45899999999999998721         123699999999999999999999973 22                   23


Q ss_pred             EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++++....   ...+           ....+.+...      ....+||||||||.+.+++++.|+.++++..      
T Consensus       518 ~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g  591 (758)
T PRK11034        518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG  591 (758)
T ss_pred             EeechhhcccccHHHHcCCCCCcccccccchHHHHHH------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence            344322110   0000           0011111111      1124699999999999999999999998542      


Q ss_pred             -----CCcEEEEEecCC-------------------------ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHH----
Q 036742          489 -----DSCKLILCCEDD-------------------------VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR----  533 (629)
Q Consensus       489 -----~~~~~ILitN~~-------------------------~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~----  533 (629)
                           .++.||+|+|.-                         ..+.+.|..|+ .++.|.+++.+++.+++...+.    
T Consensus       592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~  671 (758)
T PRK11034        592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA  671 (758)
T ss_pred             ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                 356689999832                         11457788888 4899999999999888765432    


Q ss_pred             ---hcCC--CCCHHHHHHHHHHc
Q 036742          534 ---KEDF--DLSMTFAAKIATKA  551 (629)
Q Consensus       534 ---kegl--~is~e~L~~Ia~~s  551 (629)
                         ..++  .++++++++|++..
T Consensus       672 ~l~~~~i~l~~~~~~~~~l~~~~  694 (758)
T PRK11034        672 QLDQKGVSLEVSQEARDWLAEKG  694 (758)
T ss_pred             HHHHCCCCceECHHHHHHHHHhC
Confidence               2344  55888888888664

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.37  E-value=8.6e-12  Score=147.88  Aligned_cols=171  Identities=15%  Similarity=0.227  Sum_probs=117.8

Q ss_pred             CcccccHHHHHHHHHHHHcC-------CCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDG-------NCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g-------~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      +.|+||+++++.|...+...       .-|  .+||+||+|||||++|+++|+.++|...                 .++
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~-----------------~~~  571 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED-----------------AMI  571 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc-----------------ceE
Confidence            66899999999999888622       112  5899999999999999999999876531                 123


Q ss_pred             EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++.+....   ...+           ....+.+....      ...+||||||||.+++++++.|++++|+..      
T Consensus       572 ~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~------~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g  645 (821)
T CHL00095        572 RLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK------KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG  645 (821)
T ss_pred             EEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh------CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCC
Confidence            333221100   0000           00111111111      123699999999999999999999999642      


Q ss_pred             -----CCcEEEEEecCCcc-------------------------------------chHHHhhcc-eEeeccCCCHHHHH
Q 036742          489 -----DSCKLILCCEDDVD-------------------------------------IIESVKTHC-KVIKVDPPVTHEIM  525 (629)
Q Consensus       489 -----~~~~~ILitN~~~~-------------------------------------I~~aLrSR~-~~I~F~ppt~eei~  525 (629)
                           .++.||+|+|.-..                                     +.+.|.+|+ .+|.|.+++.+++.
T Consensus       646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~  725 (821)
T CHL00095        646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVW  725 (821)
T ss_pred             cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHH
Confidence                 56789999874211                                     124678888 79999999999999


Q ss_pred             HHHHHHHHh-------cC--CCCCHHHHHHHHHHc
Q 036742          526 EVLIQIARK-------ED--FDLSMTFAAKIATKA  551 (629)
Q Consensus       526 ~iL~~i~~k-------eg--l~is~e~L~~Ia~~s  551 (629)
                      +++...+.+       .+  +.+++++++.|++.+
T Consensus       726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~  760 (821)
T CHL00095        726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG  760 (821)
T ss_pred             HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence            888766442       22  467899999998863

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.35  E-value=1.4e-11  Score=144.44  Aligned_cols=168  Identities=15%  Similarity=0.213  Sum_probs=116.3

Q ss_pred             CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||+++++.|.+++...         ...++||+||+|||||++|++||+.+.+.                    ++
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~--------------------~~  513 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH--------------------LE  513 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC--------------------eE
Confidence            56899999999999888632         12258999999999999999999997432                    22


Q ss_pred             EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++.+....   ...+           ....+.+...      ...++||||||||.+.+++++.|+++++...      
T Consensus       514 ~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g  587 (731)
T TIGR02639       514 RFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNG  587 (731)
T ss_pred             EEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCC
Confidence            333221100   0000           0011112111      1224699999999999999999999998641      


Q ss_pred             -----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh---
Q 036742          489 -----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK---  534 (629)
Q Consensus       489 -----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k---  534 (629)
                           .++.||+|+|.-.                         .+.+.|..|+ .+|.|.+++.+++.+++...+.+   
T Consensus       588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~  667 (731)
T TIGR02639       588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK  667 (731)
T ss_pred             cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                 3566888887531                         1356778888 58999999999999988876542   


Q ss_pred             ----c--CCCCCHHHHHHHHHHc
Q 036742          535 ----E--DFDLSMTFAAKIATKA  551 (629)
Q Consensus       535 ----e--gl~is~e~L~~Ia~~s  551 (629)
                          .  .+.++++++++|++.+
T Consensus       668 ~l~~~~~~l~i~~~a~~~La~~~  690 (731)
T TIGR02639       668 QLNEKNIKLELTDDAKKYLAEKG  690 (731)
T ss_pred             HHHhCCCeEEeCHHHHHHHHHhC
Confidence                2  2567889999888864

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.35  E-value=2.5e-11  Score=110.03  Aligned_cols=139  Identities=17%  Similarity=0.250  Sum_probs=92.3

Q ss_pred             cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHH
Q 036742          361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY  440 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~  440 (629)
                      +|++.++..+..++......+++|+||||||||++++.+++.+....                 ..++.+++....... 
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-----------------~~v~~~~~~~~~~~~-   62 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG-----------------APFLYLNASDLLEGL-   62 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC-----------------CCeEEEehhhhhhhh-
Confidence            36778888888888876667899999999999999999999874211                 125566553222111 


Q ss_pred             HHHHHHHH--HHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc------CCCcEEEEEecCCc--cchHHHhhc
Q 036742          441 ALMGLVKE--IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY------TDSCKLILCCEDDV--DIIESVKTH  510 (629)
Q Consensus       441 ~l~~~lre--i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~------~~~~~~ILitN~~~--~I~~aLrSR  510 (629)
                      ........  ..............+|||||++.+.......+...++..      ...+.+|++++...  .+.+.+.+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r  142 (151)
T cd00009          63 VVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDR  142 (151)
T ss_pred             HHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhh
Confidence            00000100  001111112234569999999999777777777777755      35778999998877  688899999


Q ss_pred             c-eEeecc
Q 036742          511 C-KVIKVD  517 (629)
Q Consensus       511 ~-~~I~F~  517 (629)
                      + ..+.|+
T Consensus       143 ~~~~i~~~  150 (151)
T cd00009         143 LDIRIVIP  150 (151)
T ss_pred             hccEeecC
Confidence            9 566654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.34  E-value=4.7e-11  Score=132.07  Aligned_cols=205  Identities=12%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742          358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~  437 (629)
                      ..|+|++++++.+...+..+.  |+||.||||||||++|++|+..+.....                  +..+.+.-.. 
T Consensus        20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~------------------F~~~~~~ftt-   78 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARA------------------FEYLMTRFST-   78 (498)
T ss_pred             hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCc------------------ceeeeeeecC-
Confidence            678999999999998888765  7999999999999999999998632211                  1111110000 


Q ss_pred             hHHHHHH-HHHHHH--HHhc--cCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccC---------CCcEE-EEEecCCc
Q 036742          438 AKYALMG-LVKEIR--DNLA--ITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------DSCKL-ILCCEDDV  501 (629)
Q Consensus       438 ~k~~l~~-~lrei~--~~~~--~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------~~~~~-ILitN~~~  501 (629)
                      ...++.. .+....  ..|.  ..+.. ...|||+|||..+++..++.|+..|++..         -..+| ++++|...
T Consensus        79 p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP  158 (498)
T PRK13531         79 PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP  158 (498)
T ss_pred             cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence            0000000 011111  1111  11111 22399999999999999999999996432         12244 44555443


Q ss_pred             c---chHHHhhcce-EeeccCCCH-HHHHHHHHHHHH-----------------------hcCCCCCHHHHHHHHHHcc-
Q 036742          502 D---IIESVKTHCK-VIKVDPPVT-HEIMEVLIQIAR-----------------------KEDFDLSMTFAAKIATKAK-  552 (629)
Q Consensus       502 ~---I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~-----------------------kegl~is~e~L~~Ia~~s~-  552 (629)
                      .   ..+++..|+. .+.++++.. ++..++|.....                       -..+.+++.++++|++... 
T Consensus       159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~  238 (498)
T PRK13531        159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQ  238 (498)
T ss_pred             ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHH
Confidence            2   5568999985 467777763 444566643211                       1345677888888776532 


Q ss_pred             ---------CCHHHHHHHHHHHHhcCCCCCCCCCCchhHH
Q 036742          553 ---------QNLRKAIMALEACKALNYPFADDQPIPLGWE  583 (629)
Q Consensus       553 ---------GDiR~AInlLq~~~~~~~~~~~~~~~~~~~e  583 (629)
                               -..|..+.++..+++.++-.+.+..+|.|+.
T Consensus       239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~  278 (498)
T PRK13531        239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI  278 (498)
T ss_pred             HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence                     3568888888888887777777777777755

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.33  E-value=2.7e-11  Score=132.93  Aligned_cols=173  Identities=17%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             cccccHHHHHHHHHHHH-------cC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          359 GFICHRHEAQLLKELVV-------DG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~-------~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .|+||+++++.|..++.       .+         ...++||+||||||||++|+++|+.+....               
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---------------  136 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---------------  136 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---------------
Confidence            48999999998877662       11         124799999999999999999999874332               


Q ss_pred             CCcceEEEecccc---hhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH--------------HHHHHHHHHH
Q 036742          423 SSAHHVELNVNLQ---ANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIM  484 (629)
Q Consensus       423 sS~~vleInas~~---~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~--------------~~q~aLlril  484 (629)
                           +.+++...   .+....+...+......... .....+.||||||||.+..              ++|++|+++|
T Consensus       137 -----~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L  211 (412)
T PRK05342        137 -----AIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL  211 (412)
T ss_pred             -----eecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence                 22222110   00000112223332221110 1123456999999999964              4899999999


Q ss_pred             hccC-------------CCcEEEEEecC--------C------------------------------c------------
Q 036742          485 DGYT-------------DSCKLILCCED--------D------------------------------V------------  501 (629)
Q Consensus       485 Ee~~-------------~~~~~ILitN~--------~------------------------------~------------  501 (629)
                      |...             ....+|.|+|-        .                              .            
T Consensus       212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~  291 (412)
T PRK05342        212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI  291 (412)
T ss_pred             hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence            8421             00112222221        0                              0            


Q ss_pred             --cchHHHhhcc-eEeeccCCCHHHHHHHHHH----H-------HHhcCC--CCCHHHHHHHHHHc
Q 036742          502 --DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----I-------ARKEDF--DLSMTFAAKIATKA  551 (629)
Q Consensus       502 --~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i-------~~kegl--~is~e~L~~Ia~~s  551 (629)
                        .+.|.|..|+ .++.|.+++.+++..|+..    +       +...++  .++++++.+|++.+
T Consensus       292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~  357 (412)
T PRK05342        292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA  357 (412)
T ss_pred             HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence              0245566676 5788999999999988862    2       223344  56899999999874

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.6e-11  Score=144.15  Aligned_cols=193  Identities=17%  Similarity=0.124  Sum_probs=134.5

Q ss_pred             CCCCcccccHHHHHHHHHHHH-------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVV-------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~-------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..|++|.|.+.++..|++++-             -.+..++|||||||||||..|+++|..+....       .++.+-.
T Consensus       262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-------~kisffm  334 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-------RKISFFM  334 (1080)
T ss_pred             cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-------cccchhh
Confidence            468999999999999999984             12234799999999999999999999863221       0111111


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccCCC
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYTDS  490 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~~~  490 (629)
                      ...+..+    +.+.|      +.-++..-.|..+....+.|||+||||.|.+           .....|+-+|+.....
T Consensus       335 rkgaD~l----skwvg------EaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR  404 (1080)
T KOG0732|consen  335 RKGADCL----SKWVG------EAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR  404 (1080)
T ss_pred             hcCchhh----ccccC------cHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence            1111110    11222      1122333333333444556999999998832           3445677888866555


Q ss_pred             c--EEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          491 C--KLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       491 ~--~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                      .  .+|.+||+++.++++||+..   ..+.|+-|+.+...++|...-.+..-.++...+..|++.+.|..+.-|..|=+
T Consensus       405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT  483 (1080)
T KOG0732|consen  405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT  483 (1080)
T ss_pred             CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence            4  45557899999999999865   46899999999999999877777667888999999999999887776666533

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.31  E-value=1e-10  Score=139.16  Aligned_cols=174  Identities=14%  Similarity=0.192  Sum_probs=118.4

Q ss_pred             CCcccccHHHHHHHHHHHHcC-------C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742          357 LNGFICHRHEAQLLKELVVDG-------N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH  427 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g-------~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v  427 (629)
                      ...|+|++.++..|...+...       .  ...+||+||+|||||++|++||..+++...                 .+
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~-----------------~~  629 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD-----------------AM  629 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC-----------------cE
Confidence            467899999999999888632       1  125899999999999999999998864321                 14


Q ss_pred             EEEecccchhhHHHHHHHH------------HHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------
Q 036742          428 VELNVNLQANAKYALMGLV------------KEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------  488 (629)
Q Consensus       428 leInas~~~~~k~~l~~~l------------rei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------  488 (629)
                      +.++++..... .....++            ..+.....   ...+.||||||++.+.+..++.|+.+++...       
T Consensus       630 i~id~se~~~~-~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr  705 (857)
T PRK10865        630 VRIDMSEFMEK-HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGR  705 (857)
T ss_pred             EEEEhHHhhhh-hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCce
Confidence            55555321110 0000111            00011100   1123599999999999999999999998542       


Q ss_pred             ----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh----
Q 036742          489 ----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK----  534 (629)
Q Consensus       489 ----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k----  534 (629)
                          .++.||+|||...                         .+.++|.+|+ .++.|.|++.+++..++...+.+    
T Consensus       706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r  785 (857)
T PRK10865        706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR  785 (857)
T ss_pred             EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                3345889998621                         1346788999 89999999999998887765433    


Q ss_pred             ---cC--CCCCHHHHHHHHHHc
Q 036742          535 ---ED--FDLSMTFAAKIATKA  551 (629)
Q Consensus       535 ---eg--l~is~e~L~~Ia~~s  551 (629)
                         .+  +.+++++++.|++..
T Consensus       786 l~~~gi~l~is~~al~~L~~~g  807 (857)
T PRK10865        786 LEERGYEIHISDEALKLLSENG  807 (857)
T ss_pred             HHhCCCcCcCCHHHHHHHHHcC
Confidence               23  457899999988764

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.31  E-value=5.3e-11  Score=141.70  Aligned_cols=185  Identities=14%  Similarity=0.176  Sum_probs=127.5

Q ss_pred             CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+|++.+++.+...+....         ...+||+||+|||||++|++||..+++...                 .++
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~-----------------~~i  627 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED-----------------AMV  627 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------------cEE
Confidence            568999999999999886421         225899999999999999999999865421                 134


Q ss_pred             EEecccchhh---HHHH-----------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQANA---KYAL-----------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~~---k~~l-----------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++++.....   ..++           ...+.+....      ..+.|||||||+.+++.+++.|+.++++..      
T Consensus       628 ~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g  701 (852)
T TIGR03346       628 RIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQG  701 (852)
T ss_pred             EEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCC
Confidence            4444321110   0000           0011111111      123599999999999999999999998642      


Q ss_pred             -----CCcEEEEEecCCcc-------------------------chHHHhhcc-eEeeccCCCHHHHHHHHHHHHH----
Q 036742          489 -----DSCKLILCCEDDVD-------------------------IIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR----  533 (629)
Q Consensus       489 -----~~~~~ILitN~~~~-------------------------I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~----  533 (629)
                           .++.||+|||.-..                         +.+.|..|+ .++.|.|++.+++..++...+.    
T Consensus       702 ~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~  781 (852)
T TIGR03346       702 RTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRK  781 (852)
T ss_pred             eEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence                 45669999987221                         234566777 6899999999998887766543    


Q ss_pred             ---hc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Q 036742          534 ---KE--DFDLSMTFAAKIATKA---KQNLRKAIMALEAC  565 (629)
Q Consensus       534 ---ke--gl~is~e~L~~Ia~~s---~GDiR~AInlLq~~  565 (629)
                         ..  .+.+++++++.|++..   .+.+|..-+.++..
T Consensus       782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~  821 (852)
T TIGR03346       782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE  821 (852)
T ss_pred             HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence               22  2567999999999874   47788877777654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3e-11  Score=135.27  Aligned_cols=180  Identities=15%  Similarity=0.173  Sum_probs=130.9

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      .+.. +++.|.......+++++.           .  ...+++|+|||||||||.++++||++. +..            
T Consensus       180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-~a~------------  245 (693)
T KOG0730|consen  180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-GAF------------  245 (693)
T ss_pred             cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-Cce------------
Confidence            5556 788888888888888774           1  123479999999999999999999995 332            


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC-CeEEEEEccchhhH----------HHHHHHHHHHhccC
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-NAMIVIYEVDKAAE----------HIQYLIKWIMDGYT  488 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~-~kVIIIDEID~Ls~----------~~q~aLlrilEe~~  488 (629)
                             ++.+|+.....  ....+.-.+++..|......+ +.+|||||+|.+.+          .....|+.+++...
T Consensus       246 -------~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~  316 (693)
T KOG0730|consen  246 -------LFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK  316 (693)
T ss_pred             -------eEecccHHHHH--hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence                   56666631110  011111222333344444444 67999999999953          35567888888665


Q ss_pred             --CCcEEEEEecCCccchHHHhh-cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742          489 --DSCKLILCCEDDVDIIESVKT-HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR  556 (629)
Q Consensus       489 --~~~~~ILitN~~~~I~~aLrS-R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR  556 (629)
                        .++.+|.++|.+..|++++|+ |+ ..+.+.-|+..+..++|+.++.+.++. ++..+..++..++|...
T Consensus       317 ~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvG  387 (693)
T KOG0730|consen  317 PDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVG  387 (693)
T ss_pred             CcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhH
Confidence              556677788999999999997 77 568889999999999999999887776 67889999999988664

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.30  E-value=8.1e-11  Score=126.30  Aligned_cols=234  Identities=12%  Similarity=0.115  Sum_probs=143.5

Q ss_pred             CCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC------------ccccccccC
Q 036742          356 SLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP------------TQVLVPVAS  423 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~------------~~v~~~i~s  423 (629)
                      .|.+|+||++++..|...+......++||.||+|||||++|++++..+.........-.            .+.......
T Consensus        15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~   94 (350)
T CHL00081         15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNG   94 (350)
T ss_pred             CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhccc
Confidence            68999999999999988888877789999999999999999999988753221100000            000000000


Q ss_pred             --------CcceEEEec--ccchhhHHHHHHHHHHHHHH-----hccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC
Q 036742          424 --------SAHHVELNV--NLQANAKYALMGLVKEIRDN-----LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT  488 (629)
Q Consensus       424 --------S~~vleIna--s~~~~~k~~l~~~lrei~~~-----~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~  488 (629)
                              ...++.+..  ..++-...  .+.-+.+...     ........+.+|||||++.+....|..|+..|++..
T Consensus        95 ~~~~~~~~~~~~~~lp~~~ted~l~G~--iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~  172 (350)
T CHL00081         95 ETIETEKIKIPMVDLPLGATEDRVCGT--IDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGW  172 (350)
T ss_pred             ccccceeccccceecCCCCchhhccCc--ccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence                    000111111  11100000  0011111100     001112234599999999999999999999987521


Q ss_pred             -----------CCcEEEEEe--cCCc-cchHHHhhcce-EeeccCCC-HHHHHHHHHHHHH-------------------
Q 036742          489 -----------DSCKLILCC--EDDV-DIIESVKTHCK-VIKVDPPV-THEIMEVLIQIAR-------------------  533 (629)
Q Consensus       489 -----------~~~~~ILit--N~~~-~I~~aLrSR~~-~I~F~ppt-~eei~~iL~~i~~-------------------  533 (629)
                                 -..+|++++  |..+ .+.+++..|+. .+.+..+. .++..++|.+...                   
T Consensus       173 ~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~  252 (350)
T CHL00081        173 NTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEEL  252 (350)
T ss_pred             eEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccC
Confidence                       123455544  3223 48899999984 67777776 3555555554311                   


Q ss_pred             ----------hcCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          534 ----------KEDFDLSMTFAAKIATKAK----QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       534 ----------kegl~is~e~L~~Ia~~s~----GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                                -..+.++++++.+|++.+.    -..|-.|.+++.+.+.+.--..+..++.|+..+..-+..
T Consensus       253 ~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~  324 (350)
T CHL00081        253 RSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLR  324 (350)
T ss_pred             HHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence                      1236788999888877652    258999999998888777667777888887766665544

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.1e-11  Score=128.27  Aligned_cols=179  Identities=17%  Similarity=0.200  Sum_probs=110.4

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-----------C-CCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-----------G-NCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g-~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      +..+|+++.|.-+.+..|.+.+.-           | ..| .++||||||+|||.+|++||..+....            
T Consensus       127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf------------  194 (388)
T KOG0651|consen  127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF------------  194 (388)
T ss_pred             cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce------------
Confidence            344899999999999888887741           1 223 689999999999999999999974332            


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG--  486 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe--  486 (629)
                              +.+.++.-.  ...+.+--+-+++.|..+.....|||||||||.+.           ...+..|-.++++  
T Consensus       195 --------l~v~ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd  264 (388)
T KOG0651|consen  195 --------LKVVSSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD  264 (388)
T ss_pred             --------EEeeHhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence                    333232100  00111222233334444444455899999999982           2334444444332  


Q ss_pred             -c--CCCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccC
Q 036742          487 -Y--TDSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQ  553 (629)
Q Consensus       487 -~--~~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl--~is~e~L~~Ia~~s~G  553 (629)
                       +  ...+++|+++|+++.|+++|.+-  + ..+..+-|+....+.+++-....-..  .++.+.+-.+++..+|
T Consensus       265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g  339 (388)
T KOG0651|consen  265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG  339 (388)
T ss_pred             cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence             2  26688999999999999999874  3 24555556555555555433222111  3456666666666655

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.2e-10  Score=121.18  Aligned_cols=139  Identities=18%  Similarity=0.217  Sum_probs=91.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc----cchhhHH-HHHHHHHHHHHHhcc
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN----LQANAKY-ALMGLVKEIRDNLAI  455 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas----~~~~~k~-~l~~~lrei~~~~~~  455 (629)
                      -||||||||||||+|++++|+.|.--..  +         -...+.++|||+.    .+.+... .+..++..+.+....
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkLSIR~~--~---------~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d  247 (423)
T KOG0744|consen  179 LILLHGPPGTGKTSLCKALAQKLSIRTN--D---------RYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED  247 (423)
T ss_pred             EEEEeCCCCCChhHHHHHHHHhheeeec--C---------ccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            4899999999999999999999742110  0         0122347899982    3433332 333334333332222


Q ss_pred             CcCCCCeEEEEEccchhhH---------------HHHHHHHHHHhccC--CCcEEEEEecCCccchHHHhhcc-eEeecc
Q 036742          456 TPEVSNAMIVIYEVDKAAE---------------HIQYLIKWIMDGYT--DSCKLILCCEDDVDIIESVKTHC-KVIKVD  517 (629)
Q Consensus       456 ~~~~~~kVIIIDEID~Ls~---------------~~q~aLlrilEe~~--~~~~~ILitN~~~~I~~aLrSR~-~~I~F~  517 (629)
                        .+.-..++|||++.+..               .+.|+|+.-++...  .++.++.|+|-.+.|+.++..|. .+..+.
T Consensus       248 --~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG  325 (423)
T KOG0744|consen  248 --RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVG  325 (423)
T ss_pred             --CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecC
Confidence              11123789999999932               35678888887543  44445556677788999999998 567788


Q ss_pred             CCCHHHHHHHHHHHH
Q 036742          518 PPVTHEIMEVLIQIA  532 (629)
Q Consensus       518 ppt~eei~~iL~~i~  532 (629)
                      +|+...+.++++...
T Consensus       326 ~Pt~~ai~~Ilksci  340 (423)
T KOG0744|consen  326 PPTAEAIYEILKSCI  340 (423)
T ss_pred             CccHHHHHHHHHHHH
Confidence            999998888887654

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.27  E-value=1e-10  Score=125.32  Aligned_cols=232  Identities=13%  Similarity=0.089  Sum_probs=137.8

Q ss_pred             CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-------CCCC-C-CCCCCccccccccCC---
Q 036742          357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-------GDAC-W-NEKWPTQVLVPVASS---  424 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-------g~~~-~-~~~~~~~v~~~i~sS---  424 (629)
                      |..|+|+++++..|.-.+-.....+++|.|++|+||||++++++..+-       +... . ......|..|.....   
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   82 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE   82 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence            688999999998876666655567899999999999999999998862       1100 0 000111111121100   


Q ss_pred             --------cceEEE--ecccch--hhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC
Q 036742          425 --------AHHVEL--NVNLQA--NAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT  488 (629)
Q Consensus       425 --------~~vleI--nas~~~--~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~  488 (629)
                              ..+..+  ++..++  |.- .+...++.  ..+.    ......+.+|||||++.+....|..|+..|++..
T Consensus        83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~-d~~~~l~~--g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~  159 (337)
T TIGR02030        83 PLSIIKKPVPVVDLPLGATEDRVCGTL-DIERALTE--GVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGW  159 (337)
T ss_pred             ccccccCCCCcCCCCCCCcccceecch-hHhhHhhc--CCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence                    001111  111111  100 00011100  0111    1111234699999999999999999999997532


Q ss_pred             -----------CCcEEEEE--ecCCc-cchHHHhhcce-EeeccCCCH-HHHHHHHHHHHH-------------------
Q 036742          489 -----------DSCKLILC--CEDDV-DIIESVKTHCK-VIKVDPPVT-HEIMEVLIQIAR-------------------  533 (629)
Q Consensus       489 -----------~~~~~ILi--tN~~~-~I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~-------------------  533 (629)
                                 -..+|+++  .|..+ .+.+++..|+. .+.+..+.. ++..++|.+...                   
T Consensus       160 ~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~  239 (337)
T TIGR02030       160 NVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEAL  239 (337)
T ss_pred             eEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcC
Confidence                       11334443  34333 48889999995 566766665 555566655211                   


Q ss_pred             ----------hcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          534 ----------KEDFDLSMTFAAKIATKA---KQ-NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       534 ----------kegl~is~e~L~~Ia~~s---~G-DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                                -..+.++++++++|++.+   +. ..|..+.++..+++.+.--..+..++.|+..++.-+..
T Consensus       240 ~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~  311 (337)
T TIGR02030       240 QAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR  311 (337)
T ss_pred             HHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence                      133568888888877654   33 47999999998888777666677777887766655443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.6e-10  Score=125.21  Aligned_cols=153  Identities=11%  Similarity=0.127  Sum_probs=102.4

Q ss_pred             cCCCCCCcccccHHHHHHHH----HHHHc-------CC-C-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          352 HQPSSLNGFICHRHEAQLLK----ELVVD-------GN-C-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk----~~L~~-------g~-~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      -+|.+|+.++..+++++.|.    .+++.       |. + ++.|||||||||||+++-|+|++| +.++          
T Consensus       195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~ydI----------  263 (457)
T KOG0743|consen  195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYDI----------  263 (457)
T ss_pred             CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCce----------
Confidence            36789999998877665554    44432       22 1 379999999999999999999997 5543          


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------------HHHHHH
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------------HIQYLI  480 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------------~~q~aL  480 (629)
                             +.+++...  ....    + ++.++...     ....||+|+|||.-..                  -...-|
T Consensus       264 -------ydLeLt~v--~~n~----d-Lr~LL~~t-----~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL  324 (457)
T KOG0743|consen  264 -------YDLELTEV--KLDS----D-LRHLLLAT-----PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL  324 (457)
T ss_pred             -------EEeeeccc--cCcH----H-HHHHHHhC-----CCCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence                   13344332  1111    1 34433322     1234999999998621                  112346


Q ss_pred             HHHHhccCCC----cEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHh
Q 036742          481 KWIMDGYTDS----CKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       481 lrilEe~~~~----~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                      +..++..-+.    ..||+|||..++|+|||.++.   ..|++...+.+.......+.+.-
T Consensus       325 LNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~  385 (457)
T KOG0743|consen  325 LNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI  385 (457)
T ss_pred             hhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence            6666644333    468999999999999999954   46888888888887777766543

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=7.1e-11  Score=136.36  Aligned_cols=187  Identities=16%  Similarity=0.202  Sum_probs=124.8

Q ss_pred             CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||++++..+...++..         +...+||.||.|+|||.||++||..|+|...                 .++
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~-----------------ali  553 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ-----------------ALI  553 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc-----------------cce
Confidence            56899999999999999721         2236899999999999999999999987542                 256


Q ss_pred             EEecccchhhHHHHHHHHHHHHHHhccCcC----------CCCeEEEEEccchhhHHHHHHHHHHHhccC----------
Q 036742          429 ELNVNLQANAKYALMGLVKEIRDNLAITPE----------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------  488 (629)
Q Consensus       429 eInas~~~~~k~~l~~~lrei~~~~~~~~~----------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------  488 (629)
                      .++.|..... ..+..++...- -|.....          .-+.||++|||++.++++++.|+.+++...          
T Consensus       554 R~DMSEy~Ek-HsVSrLIGaPP-GYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~Vd  631 (786)
T COG0542         554 RIDMSEYMEK-HSVSRLIGAPP-GYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVD  631 (786)
T ss_pred             eechHHHHHH-HHHHHHhCCCC-CCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence            6666543321 11111111000 0000000          113499999999999999999999998643          


Q ss_pred             -CCcEEEEEecCCc--------------------c--------chHHHhhcce-EeeccCCCHHHHHHHHHHHH------
Q 036742          489 -DSCKLILCCEDDV--------------------D--------IIESVKTHCK-VIKVDPPVTHEIMEVLIQIA------  532 (629)
Q Consensus       489 -~~~~~ILitN~~~--------------------~--------I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~------  532 (629)
                       .++.||||+|-=.                    .        +.|.|+.|+. +|.|.+++.+.+.+|+...+      
T Consensus       632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~  711 (786)
T COG0542         632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR  711 (786)
T ss_pred             cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence             5567899987411                    1        2355667775 89999999999887776543      


Q ss_pred             -HhcCC--CCCHHHHHHHHHHcc---CCHHHHHHHHH
Q 036742          533 -RKEDF--DLSMTFAAKIATKAK---QNLRKAIMALE  563 (629)
Q Consensus       533 -~kegl--~is~e~L~~Ia~~s~---GDiR~AInlLq  563 (629)
                       ...++  .+++++.++|++.+-   .-.|-+-..+|
T Consensus       712 L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq  748 (786)
T COG0542         712 LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ  748 (786)
T ss_pred             HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence             23344  568999999988863   22344444444

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.25  E-value=2e-10  Score=116.83  Aligned_cols=188  Identities=15%  Similarity=0.197  Sum_probs=126.5

Q ss_pred             hccCCCCCCcccccHHHHHHH----HHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPSSLNGFICHRHEAQLL----KELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~L----k~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ....|..+++++|.+..++.|    ..++......|+||+|+.|||||++++++..++...++                 
T Consensus        19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL-----------------   81 (249)
T PF05673_consen   19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL-----------------   81 (249)
T ss_pred             CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc-----------------
Confidence            345677889999988866555    45555666679999999999999999999999765543                 


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHh----ccCCCcEEEEEecCC
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMD----GYTDSCKLILCCEDD  500 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilE----e~~~~~~~ILitN~~  500 (629)
                      .++++....-....    +++..+.    .  ...+-|||+||+--= .......|..+||    ..+.++.|..|+|..
T Consensus        82 RlIev~k~~L~~l~----~l~~~l~----~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR  151 (249)
T PF05673_consen   82 RLIEVSKEDLGDLP----ELLDLLR----D--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR  151 (249)
T ss_pred             eEEEECHHHhccHH----HHHHHHh----c--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence            36777664333321    2222222    1  112349999986432 2334455666665    456788888898876


Q ss_pred             ccchH-----------------------HHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHc
Q 036742          501 VDIIE-----------------------SVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA-----KIATKA  551 (629)
Q Consensus       501 ~~I~~-----------------------aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~-----~Ia~~s  551 (629)
                      +.+.+                       +|..|| ..+.|.+++.++..+|+...+.+.|+.++++.+.     ......
T Consensus       152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg  231 (249)
T PF05673_consen  152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG  231 (249)
T ss_pred             hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence            54432                       244566 6799999999999999999999999999864443     333334


Q ss_pred             cCCHHHHHHHHHH
Q 036742          552 KQNLRKAIMALEA  564 (629)
Q Consensus       552 ~GDiR~AInlLq~  564 (629)
                      +.+-|.|-..+..
T Consensus       232 ~RSGRtA~QF~~~  244 (249)
T PF05673_consen  232 GRSGRTARQFIDD  244 (249)
T ss_pred             CCCHHHHHHHHHH
Confidence            4566666655544

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.5e-10  Score=125.56  Aligned_cols=198  Identities=18%  Similarity=0.191  Sum_probs=132.8

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .-++|   ..+.|.+.....+++|+.    ......++++|-||+|||.+..-+...+.+...               +.
T Consensus       145 ~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~---------------~~  206 (529)
T KOG2227|consen  145 NTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK---------------SP  206 (529)
T ss_pred             hcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc---------------cc
Confidence            44555   677888888888888875    444557999999999999999977776533221               12


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCC---------------CCeEEEEEccchhhHHHHHHHHHHHhcc---
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---------------SNAMIVIYEVDKAAEHIQYLIKWIMDGY---  487 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~---------------~~kVIIIDEID~Ls~~~q~aLlrilEe~---  487 (629)
                      .++++||..-.....++..++..+.+.....+.+               ..-||++||+|.|....+..|+.+++.+   
T Consensus       207 ~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp  286 (529)
T KOG2227|consen  207 VTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP  286 (529)
T ss_pred             eeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC
Confidence            3578888432222222233333332211111111               1239999999999887788888877743   


Q ss_pred             CCCcEEEEEecCCcc---chHHHhhcc----eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHH---ccCCHH
Q 036742          488 TDSCKLILCCEDDVD---IIESVKTHC----KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATK---AKQNLR  556 (629)
Q Consensus       488 ~~~~~~ILitN~~~~---I~~aLrSR~----~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~---s~GDiR  556 (629)
                      ...+.+|.++|..+.   +++.|..++    .++.|.||+.++|.+||+..+..+... +-+.++..+|+.   ..||+|
T Consensus       287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR  366 (529)
T KOG2227|consen  287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR  366 (529)
T ss_pred             cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence            355556667787543   678888866    479999999999999999988765543 334466666665   479999


Q ss_pred             HHHHHHHHH
Q 036742          557 KAIMALEAC  565 (629)
Q Consensus       557 ~AInlLq~~  565 (629)
                      +|+..++.+
T Consensus       367 kaLdv~R~a  375 (529)
T KOG2227|consen  367 KALDVCRRA  375 (529)
T ss_pred             HHHHHHHHH
Confidence            999999843

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.23  E-value=1.8e-10  Score=126.18  Aligned_cols=172  Identities=17%  Similarity=0.192  Sum_probs=106.9

Q ss_pred             CcccccHHHHHHHHHHHH-------c---CC--------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          358 NGFICHRHEAQLLKELVV-------D---GN--------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~-------~---g~--------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      +-|+||+++++.|...+.       .   ..        ..++||+||||||||++|+++|+.+. ..+           
T Consensus        77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-~pf-----------  144 (413)
T TIGR00382        77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-VPF-----------  144 (413)
T ss_pred             ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-CCe-----------
Confidence            447999999999887762       1   11        23799999999999999999998863 221           


Q ss_pred             cccCCcceEEEecc-----cchhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742          420 PVASSAHHVELNVN-----LQANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE--------------HIQYL  479 (629)
Q Consensus       420 ~i~sS~~vleInas-----~~~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~--------------~~q~a  479 (629)
                              ..+++.     ...+.  -....+......... .....+.||||||+|.+..              +.|++
T Consensus       145 --------~~~da~~L~~~gyvG~--d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~  214 (413)
T TIGR00382       145 --------AIADATTLTEAGYVGE--DVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQA  214 (413)
T ss_pred             --------EEechhhccccccccc--cHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHH
Confidence                    122221     01111  012223332221111 1122345999999999975              68999


Q ss_pred             HHHHHhccC-------------CCcEEEEEecCC---------------------------c------------------
Q 036742          480 IKWIMDGYT-------------DSCKLILCCEDD---------------------------V------------------  501 (629)
Q Consensus       480 LlrilEe~~-------------~~~~~ILitN~~---------------------------~------------------  501 (629)
                      |+++||...             .++.+|+|+|-.                           .                  
T Consensus       215 LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~  294 (413)
T TIGR00382       215 LLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPE  294 (413)
T ss_pred             HHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHH
Confidence            999997321             122345554430                           0                  


Q ss_pred             -----cchHHHhhcc-eEeeccCCCHHHHHHHHHH----HHH-------hcCC--CCCHHHHHHHHHHc
Q 036742          502 -----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----IAR-------KEDF--DLSMTFAAKIATKA  551 (629)
Q Consensus       502 -----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i~~-------kegl--~is~e~L~~Ia~~s  551 (629)
                           .+.|.|..|+ .++.|.+++.+++.+|+..    +..       ..++  .++++++++|++.+
T Consensus       295 dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~  363 (413)
T TIGR00382       295 DLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA  363 (413)
T ss_pred             HHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence                 0335666777 5688999999999988765    121       1233  56899999999875

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.21  E-value=6.4e-10  Score=114.82  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             EEEEEccchhhHHHHHHHHHHHhccCCCcE-EEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCK-LILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       463 VIIIDEID~Ls~~~q~aLlrilEe~~~~~~-~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      ||||||++.|.-+++.+|.+.+|.  .-++ +|++||.            ++.|+-.|..|.++|.-.||+.+++.++|.
T Consensus       291 VLFIDEvHMLDIEcFsFlNrAlE~--d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~  368 (454)
T KOG2680|consen  291 VLFIDEVHMLDIECFSFLNRALEN--DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILR  368 (454)
T ss_pred             eEEEeeehhhhhHHHHHHHHHhhh--ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHH
Confidence            999999999999999999999985  3444 4455553            345888999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhc
Q 036742          530 QIARKEDFDLSMTFAAKIATK-AKQNLRKAIMALEACKAL  568 (629)
Q Consensus       530 ~i~~kegl~is~e~L~~Ia~~-s~GDiR~AInlLq~~~~~  568 (629)
                      -.|..+.+.+++++++.|... ....+|.+++++..+.+.
T Consensus       369 iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~  408 (454)
T KOG2680|consen  369 IRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLV  408 (454)
T ss_pred             hhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999998876 356899999999776543

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.20  E-value=1.3e-09  Score=116.43  Aligned_cols=143  Identities=16%  Similarity=0.189  Sum_probs=93.0

Q ss_pred             CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742          358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~  437 (629)
                      ..++|.++++..+..++..|.  |+||.||||||||++|+.+|+.+. ..                   ++.+.+..+..
T Consensus        24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~-~~-------------------~~~i~~t~~l~   81 (329)
T COG0714          24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG-LP-------------------FVRIQCTPDLL   81 (329)
T ss_pred             CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC-CC-------------------eEEEecCCCCC
Confidence            347888888887777776655  799999999999999999999974 33                   35555532221


Q ss_pred             hHHHHH-HHHHHH---HHHhc-cCcCCCC---eEEEEEccchhhHHHHHHHHHHHhccC------------CCcEEEEEe
Q 036742          438 AKYALM-GLVKEI---RDNLA-ITPEVSN---AMIVIYEVDKAAEHIQYLIKWIMDGYT------------DSCKLILCC  497 (629)
Q Consensus       438 ~k~~l~-~~lrei---~~~~~-~~~~~~~---kVIIIDEID~Ls~~~q~aLlrilEe~~------------~~~~~ILit  497 (629)
                      ...++. ..+...   ...+. ..+..-.   .|+++|||++..+..+++|+..|++..            ....+|.+.
T Consensus        82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~  161 (329)
T COG0714          82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ  161 (329)
T ss_pred             HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence            111111 111111   11111 1112222   399999999999999999999998721            122344455


Q ss_pred             c-----CCccchHHHhhcc-eEeeccCCCHH
Q 036742          498 E-----DDVDIIESVKTHC-KVIKVDPPVTH  522 (629)
Q Consensus       498 N-----~~~~I~~aLrSR~-~~I~F~ppt~e  522 (629)
                      |     ....+.++++.|| ..+.+..|..+
T Consensus       162 Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~  192 (329)
T COG0714         162 NPGEYEGTYPLPEALLDRFLLRIYVDYPDSE  192 (329)
T ss_pred             CccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence            7     4455899999999 67777777343

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.4e-10  Score=130.83  Aligned_cols=201  Identities=14%  Similarity=0.165  Sum_probs=150.1

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      +.-+-..+|-+||.++.+..+.+.|.+...++-+|.|+||+|||+++..+|..+-...++.          ......++.
T Consensus       162 ~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~----------~L~~~~i~s  231 (786)
T COG0542         162 ELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPE----------SLKDKRIYS  231 (786)
T ss_pred             HHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCH----------HHcCCEEEE
Confidence            4445667899999999999999999988888899999999999999999999986554321          123333555


Q ss_pred             Eecc------cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----h----HHHHHHHHHHHhccCCCcEEE
Q 036742          430 LNVN------LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----A----EHIQYLIKWIMDGYTDSCKLI  494 (629)
Q Consensus       430 Inas------~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----s----~~~q~aLlrilEe~~~~~~~I  494 (629)
                      ++..      ..+|   .+++.++.+++......   +.||||||+|.+     +    .++.|.|...+..  ...++|
T Consensus       232 LD~g~LvAGakyRG---eFEeRlk~vl~ev~~~~---~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~I  303 (786)
T COG0542         232 LDLGSLVAGAKYRG---EFEERLKAVLKEVEKSK---NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCI  303 (786)
T ss_pred             ecHHHHhccccccC---cHHHHHHHHHHHHhcCC---CeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEE
Confidence            5431      2233   34566666666544332   569999999998     1    2366777777763  456677


Q ss_pred             EEecCCcc-----chHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCCH------HHHH
Q 036742          495 LCCEDDVD-----IIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQNL------RKAI  559 (629)
Q Consensus       495 LitN~~~~-----I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GDi------R~AI  559 (629)
                      .+|+..+.     .+++|-+||+.|.+..|+.++...+|+-+..    .+++.++++++.+.+.++...|      .+||
T Consensus       304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI  383 (786)
T COG0542         304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI  383 (786)
T ss_pred             EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence            77664332     4899999999999999999999999877643    4678899999999999987654      4899


Q ss_pred             HHHHHHHhc
Q 036742          560 MALEACKAL  568 (629)
Q Consensus       560 nlLq~~~~~  568 (629)
                      .+++.+++.
T Consensus       384 DLiDeA~a~  392 (786)
T COG0542         384 DLLDEAGAR  392 (786)
T ss_pred             HHHHHHHHH
Confidence            999876653

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.18  E-value=2.3e-10  Score=124.58  Aligned_cols=105  Identities=24%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             CeEEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eE
Q 036742          461 NAMIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KV  513 (629)
Q Consensus       461 ~kVIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~  513 (629)
                      ..||||||||.+.            .++|..|++++|...          .++.||+..    ..+.+++|.|.-|+ .+
T Consensus       248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~  327 (441)
T TIGR00390       248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR  327 (441)
T ss_pred             CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence            4499999999993            358999999998643          223344432    23566899999999 57


Q ss_pred             eeccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHH
Q 036742          514 IKVDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKA--------KQNLRKAIMALEAC  565 (629)
Q Consensus       514 I~F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s--------~GDiR~AInlLq~~  565 (629)
                      +.+.+++.+++..||..           ....+|+  .++++++..||+.+        +--.|..-.+++..
T Consensus       328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~  400 (441)
T TIGR00390       328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL  400 (441)
T ss_pred             EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence            89999999999988822           2344554  45899999998775        33456666666654

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.18  E-value=4.1e-10  Score=119.51  Aligned_cols=176  Identities=10%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .|..=.+++..++....+..++..+.  +|||.||||||||++|+.+|..+ +..+                   +.+++
T Consensus        40 ~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l-~~~~-------------------~rV~~   97 (327)
T TIGR01650        40 VPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL-NWPC-------------------VRVNL   97 (327)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH-CCCe-------------------EEEEe
Confidence            34444566777777777777776543  79999999999999999999998 4332                   33333


Q ss_pred             ccchhhHHHHHHH---HHHHH--HHhcc----CcCCCCeEEEEEccchhhHHHHHHHHHHHhcc--------------CC
Q 036742          433 NLQANAKYALMGL---VKEIR--DNLAI----TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--------------TD  489 (629)
Q Consensus       433 s~~~~~k~~l~~~---lrei~--~~~~~----~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--------------~~  489 (629)
                      ........++...   +++-.  ..|..    .....+.+||+||+|...++.++.|..++|..              ..
T Consensus        98 ~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp  177 (327)
T TIGR01650        98 DSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHP  177 (327)
T ss_pred             cCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCC
Confidence            2111100000000   00000  00000    00123458999999999999999999998831              13


Q ss_pred             CcEEEEEecCCc------------cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742          490 SCKLILCCEDDV------------DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK  550 (629)
Q Consensus       490 ~~~~ILitN~~~------------~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~  550 (629)
                      ..++|.|+|...            .+.++++.|+. ++.+..|+.++-.++|...+....-..++++++++++.
T Consensus       178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l  251 (327)
T TIGR01650       178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV  251 (327)
T ss_pred             CeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence            456788888743            26899999996 46899999999989987654321101134556665544

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.17  E-value=7.9e-10  Score=127.79  Aligned_cols=232  Identities=14%  Similarity=0.076  Sum_probs=136.0

Q ss_pred             CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-------CC-CCCC-CCCCccccccccC----
Q 036742          357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-------GD-ACWN-EKWPTQVLVPVAS----  423 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-------g~-~~~~-~~~~~~v~~~i~s----  423 (629)
                      |.+|+||+.++..|.-.+......+|||.|++|||||++|++|+..+-       |. .|.. ..+..|.+|.-..    
T Consensus         3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~   82 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE   82 (633)
T ss_pred             cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence            689999999999888888777777899999999999999999999861       00 0000 0111111111111    


Q ss_pred             --CcceEEEecccchhhHHHHH-HHHHHHHH--Hh----ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          424 --SAHHVELNVNLQANAKYALM-GLVKEIRD--NL----AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       424 --S~~vleInas~~~~~k~~l~-~~lrei~~--~~----~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                        ...++.+......  ..++. ..+.....  ..    .......+.|||||||+.|....++.|+..|+...      
T Consensus        83 ~~~~pfv~~p~~~t~--~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~  160 (633)
T TIGR02442        83 QRPVPFVNLPLGATE--DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVERE  160 (633)
T ss_pred             cCCCCeeeCCCCCcH--HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEEC
Confidence              1223333332110  00000 00111111  00    01111234599999999999999999999998532      


Q ss_pred             -------CCcEEEEEecCCc-cchHHHhhcce-EeeccCCC-HHHHHHHHHHHHH-------------------------
Q 036742          489 -------DSCKLILCCEDDV-DIIESVKTHCK-VIKVDPPV-THEIMEVLIQIAR-------------------------  533 (629)
Q Consensus       489 -------~~~~~ILitN~~~-~I~~aLrSR~~-~I~F~ppt-~eei~~iL~~i~~-------------------------  533 (629)
                             ..+.+|.++|..+ .+.++|..|+. .+.+..+. .++..+++.+...                         
T Consensus       161 g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  240 (633)
T TIGR02442       161 GLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIAR  240 (633)
T ss_pred             CceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHH
Confidence                   2345666666432 47889999994 45555543 3443334332110                         


Q ss_pred             ----hcCCCCCHHHHHHHHHHcc---C-CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          534 ----KEDFDLSMTFAAKIATKAK---Q-NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       534 ----kegl~is~e~L~~Ia~~s~---G-DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                          ...+.++++++.+|+..+.   - .+|..+.++..+.+.+.--......+.++..++.-+.
T Consensus       241 ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL  305 (633)
T TIGR02442       241 ARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL  305 (633)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence                1236778888888877652   1 4788888888776655544455566666665555444

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.16  E-value=6.9e-10  Score=125.90  Aligned_cols=199  Identities=14%  Similarity=0.165  Sum_probs=131.5

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      +++..++++|+|.....+.+.+.++.  ....+|||+|++||||+++|++|.......                 ...++
T Consensus       189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-----------------~~pfv  251 (534)
T TIGR01817       189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-----------------KRPFV  251 (534)
T ss_pred             ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-----------------CCCeE
Confidence            45556899999998877776666642  233479999999999999999999864211                 12378


Q ss_pred             EEecccchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742          429 ELNVNLQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------  488 (629)
Q Consensus       429 eInas~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------  488 (629)
                      .+||..... . .+. .++......|..        .....+.+|||||||.|....|..|+++++...           
T Consensus       252 ~i~c~~~~~-~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~  329 (534)
T TIGR01817       252 KVNCAALSE-T-LLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLK  329 (534)
T ss_pred             EeecCCCCH-H-HHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEe
Confidence            888853321 1 111 111111111111        111234599999999999999999999997532           


Q ss_pred             CCcEEEEEecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC--CCCCHHHHHHHHHHc
Q 036742          489 DSCKLILCCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED--FDLSMTFAAKIATKA  551 (629)
Q Consensus       489 ~~~~~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg--l~is~e~L~~Ia~~s  551 (629)
                      .++++|++|+..-       .+.+.|..|+.  .|.++++.  .+++..++..    .+.+.+  +.++++++..|..+.
T Consensus       330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~  409 (534)
T TIGR01817       330 VDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK  409 (534)
T ss_pred             ecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC
Confidence            2467888877542       24567777764  46677775  3455444333    333332  568999999998885


Q ss_pred             -cCCHHHHHHHHHHHHhc
Q 036742          552 -KQNLRKAIMALEACKAL  568 (629)
Q Consensus       552 -~GDiR~AInlLq~~~~~  568 (629)
                       .||+|..-+.++.+...
T Consensus       410 WPGNvrEL~~v~~~a~~~  427 (534)
T TIGR01817       410 WPGNVRELENCLERTATL  427 (534)
T ss_pred             CCChHHHHHHHHHHHHHh
Confidence             89999999999987654

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.16  E-value=3.5e-10  Score=123.17  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=75.4

Q ss_pred             CeEEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eE
Q 036742          461 NAMIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KV  513 (629)
Q Consensus       461 ~kVIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~  513 (629)
                      ..||||||||.+.            .++|..|++++|...          .++.||+..    ..+.+++|.|.-|+ .+
T Consensus       250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~  329 (443)
T PRK05201        250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR  329 (443)
T ss_pred             CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence            4599999999993            368999999999643          223333332    23566899999999 56


Q ss_pred             eeccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHHH
Q 036742          514 IKVDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKA--------KQNLRKAIMALEACK  566 (629)
Q Consensus       514 I~F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s--------~GDiR~AInlLq~~~  566 (629)
                      +.+.+++.+++..||..           ....+|+  .++++++..||+.+        +--.|..-.+++.+-
T Consensus       330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L  403 (443)
T PRK05201        330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL  403 (443)
T ss_pred             EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence            88999999999988833           2334555  56899999998775        234566666666543

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.15  E-value=3.7e-10  Score=111.79  Aligned_cols=180  Identities=21%  Similarity=0.248  Sum_probs=103.6

Q ss_pred             ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-
Q 036742          360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-  438 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-  438 (629)
                      ++|.+..++.|.+++..+...+++|+||.|+|||++++.++..+......                 ++++........ 
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~-----------------~~y~~~~~~~~~~   63 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYK-----------------VVYIDFLEESNES   63 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EEC-----------------CCHHCCTTBSHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc-----------------EEEEecccchhhh
Confidence            57889999999999998878899999999999999999999987322110                 111111000000 


Q ss_pred             --HHH---------------------------------HHHHHHHHHHHhccCcCCCCeEEEEEccchhh------HHHH
Q 036742          439 --KYA---------------------------------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------EHIQ  477 (629)
Q Consensus       439 --k~~---------------------------------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------~~~q  477 (629)
                        ...                                 ....+..+...+..  .....||||||++.+.      ....
T Consensus        64 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~  141 (234)
T PF01637_consen   64 SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFL  141 (234)
T ss_dssp             HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHH
Confidence              000                                 00111111111111  1112599999999998      4556


Q ss_pred             HHHHHHHhc--cCCCcEEEEEecCCcc------chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 036742          478 YLIKWIMDG--YTDSCKLILCCEDDVD------IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL--SMTFAAKI  547 (629)
Q Consensus       478 ~aLlrilEe--~~~~~~~ILitN~~~~------I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~i--s~e~L~~I  547 (629)
                      ..|..+++.  ...+..+|+++.....      -..++..|+..+.+.+++.++..+.+....... ..+  +++.+..+
T Consensus       142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i  220 (234)
T PF01637_consen  142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEI  220 (234)
T ss_dssp             HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHH
T ss_pred             HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence            677777765  2344455555543221      123466778889999999999999999877665 544  89999999


Q ss_pred             HHHccCCHHHHH
Q 036742          548 ATKAKQNLRKAI  559 (629)
Q Consensus       548 a~~s~GDiR~AI  559 (629)
                      ...++|.++.+.
T Consensus       221 ~~~~gG~P~~l~  232 (234)
T PF01637_consen  221 YSLTGGNPRYLQ  232 (234)
T ss_dssp             HHHHTT-HHHHH
T ss_pred             HHHhCCCHHHHh
Confidence            999999988754

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.14  E-value=4.4e-09  Score=118.76  Aligned_cols=201  Identities=16%  Similarity=0.205  Sum_probs=127.7

Q ss_pred             CcccccHHHHHHHHHHHH----c-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          358 NGFICHRHEAQLLKELVV----D-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      +-+.+.+.....|..++.    . +....++++|-||||||++++.+.++|....-.+          -+....+++||+
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~----------e~p~f~yveINg  465 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQK----------ELPKFDYVEING  465 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhc----------CCCCccEEEEcc
Confidence            445566666666666654    3 3334789999999999999999999885211000          011223788988


Q ss_pred             ccchhhHHHHHHHHHH--------------HHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccC---CCcEEE
Q 036742          433 NLQANAKYALMGLVKE--------------IRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---DSCKLI  494 (629)
Q Consensus       433 s~~~~~k~~l~~~lre--------------i~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---~~~~~I  494 (629)
                      ....+..++...+...              +...|... ......||+|||.|.|-..-|..|+-+++.+.   ....||
T Consensus       466 m~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi  545 (767)
T KOG1514|consen  466 LRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI  545 (767)
T ss_pred             eeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence            5332222221111111              11112211 12233499999999998888888888888654   333455


Q ss_pred             EEecCCcc----chHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHH
Q 036742          495 LCCEDDVD----IIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK---AKQNLRKAIMALEAC  565 (629)
Q Consensus       495 LitN~~~~----I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~---s~GDiR~AInlLq~~  565 (629)
                      .++|..+.    ++..+-||+  ..+.|.||+..|+.+++...+... ..+..++++.+++.   ..||.|+|++++..+
T Consensus       546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA  624 (767)
T KOG1514|consen  546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA  624 (767)
T ss_pred             EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            56665443    344566665  689999999999999998766543 34566666666544   579999999999876


Q ss_pred             HhcC
Q 036742          566 KALN  569 (629)
Q Consensus       566 ~~~~  569 (629)
                      ...+
T Consensus       625 ~Eia  628 (767)
T KOG1514|consen  625 AEIA  628 (767)
T ss_pred             HHHh
Confidence            6543

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=99.09  E-value=4.8e-10  Score=110.72  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE----------
Q 036742          444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV----------  513 (629)
Q Consensus       444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~----------  513 (629)
                      +.++++.+.....+. .++ +|||++|.|+..++|+|++++|+++.++.||++|+.+..++++|+|||+.          
T Consensus        40 d~iReii~~~~~~~~-~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~  117 (206)
T PRK08485         40 EDAKEVIAEAYIAES-EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVK  117 (206)
T ss_pred             HHHHHHHHHHhhCCC-CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccccccccc
Confidence            567777766555543 334 46889999999999999999999999999999999999999999999986          


Q ss_pred             ---eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          514 ---IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       514 ---I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                         +.|.+++.+++...|.. +.++++...++.+..|+..+.|.+|.++.+.+..
T Consensus       118 ~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~  171 (206)
T PRK08485        118 PLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE  171 (206)
T ss_pred             ccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence               77899999999999998 6788887788889999999999999998777653

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.1e-10  Score=125.53  Aligned_cols=172  Identities=15%  Similarity=0.169  Sum_probs=106.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE  458 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~  458 (629)
                      +.+||||||||||||.+||.|.+.|+....           .++..+.++  +...+.. ..-+..++.+.-+.+...+.
T Consensus       256 VKGiLLyGPPGTGKTLiARqIGkMLNAreP-----------KIVNGPeIL--~KYVGeS-E~NvR~LFaDAEeE~r~~g~  321 (744)
T KOG0741|consen  256 VKGILLYGPPGTGKTLIARQIGKMLNAREP-----------KIVNGPEIL--NKYVGES-EENVRKLFADAEEEQRRLGA  321 (744)
T ss_pred             eeeEEEECCCCCChhHHHHHHHHHhcCCCC-----------cccCcHHHH--HHhhccc-HHHHHHHHHhHHHHHHhhCc
Confidence            447999999999999999999999865432           122222221  1111111 11233445554444444444


Q ss_pred             CCCe-EEEEEccchh-------------hHHHHHHHHHHHhc--cCCCcEEEEEecCCccchHHHhh--cce-EeeccCC
Q 036742          459 VSNA-MIVIYEVDKA-------------AEHIQYLIKWIMDG--YTDSCKLILCCEDDVDIIESVKT--HCK-VIKVDPP  519 (629)
Q Consensus       459 ~~~k-VIIIDEID~L-------------s~~~q~aLlrilEe--~~~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~pp  519 (629)
                      .++- |||+||||.+             ...+.+.|+.-|+.  -..++.+|-.||+.+.|+++|.+  |+. .+++.-|
T Consensus       322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLP  401 (744)
T KOG0741|consen  322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLP  401 (744)
T ss_pred             cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCC
Confidence            4433 9999999999             23567888887773  34677888899999999999998  443 4777777


Q ss_pred             CHHHHHHHHHHHHH---hcCCCCC-HHHHHHHHHHcc----CCHHHHHHHHHHH
Q 036742          520 VTHEIMEVLIQIAR---KEDFDLS-MTFAAKIATKAK----QNLRKAIMALEAC  565 (629)
Q Consensus       520 t~eei~~iL~~i~~---kegl~is-~e~L~~Ia~~s~----GDiR~AInlLq~~  565 (629)
                      +..-..+||+-+..   ..++ ++ +-.++.||..+.    ..+...+...+..
T Consensus       402 DE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lTKNfSGAEleglVksA~S~  454 (744)
T KOG0741|consen  402 DEKGRLQILKIHTKRMRENNK-LSADVDLKELAALTKNFSGAELEGLVKSAQSF  454 (744)
T ss_pred             CccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            77766666654322   2222 33 334777777654    3344444444443

>PHA02244 ATPase-like protein

Probab=99.06  E-value=7.8e-10  Score=118.84  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhH-HHHH--
Q 036742          367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK-YALM--  443 (629)
Q Consensus       367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~--  443 (629)
                      ...+..|+..+.  ++||+||||||||++|+++|..+ +..                   ++.++.......- ..+.  
T Consensus       109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l-g~p-------------------fv~In~l~d~~~L~G~i~~~  166 (383)
T PHA02244        109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL-DLD-------------------FYFMNAIMDEFELKGFIDAN  166 (383)
T ss_pred             HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-CCC-------------------EEEEecChHHHhhccccccc
Confidence            345566666654  69999999999999999999986 332                   2233321000000 0000  


Q ss_pred             HHHH--HHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-----------cCCCcEEEEEecCC----------
Q 036742          444 GLVK--EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-----------YTDSCKLILCCEDD----------  500 (629)
Q Consensus       444 ~~lr--ei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-----------~~~~~~~ILitN~~----------  500 (629)
                      ..+.  .+...     ...+.+|||||++.+.+.++..|..+++.           ...++++|+++|..          
T Consensus       167 g~~~dgpLl~A-----~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G  241 (383)
T PHA02244        167 GKFHETPFYEA-----FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVA  241 (383)
T ss_pred             ccccchHHHHH-----hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCC
Confidence            0000  00010     12345999999999999999999999862           13677899999973          


Q ss_pred             -ccchHHHhhcceEeeccCCCHHH
Q 036742          501 -VDIIESVKTHCKVIKVDPPVTHE  523 (629)
Q Consensus       501 -~~I~~aLrSR~~~I~F~ppt~ee  523 (629)
                       ..+.+++++||..+.|..|+..|
T Consensus       242 ~k~L~~AllDRFv~I~~dyp~~~E  265 (383)
T PHA02244        242 RNKIDGATLDRFAPIEFDYDEKIE  265 (383)
T ss_pred             CcccCHHHHhhcEEeeCCCCcHHH
Confidence             34789999999999999887433

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.06  E-value=4.6e-10  Score=104.23  Aligned_cols=107  Identities=15%  Similarity=0.319  Sum_probs=68.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHH---HHhccC-
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR---DNLAIT-  456 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~---~~~~~~-  456 (629)
                      +|||+||||||||++|+.+|+.+ +..                   ++.+++.......    +++....   ..+... 
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~-~~~-------------------~~~i~~~~~~~~~----dl~g~~~~~~~~~~~~~   56 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL-GRP-------------------VIRINCSSDTTEE----DLIGSYDPSNGQFEFKD   56 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH-TCE-------------------EEEEE-TTTSTHH----HHHCEEET-TTTTCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-hcc-------------------eEEEEeccccccc----cceeeeeeccccccccc
Confidence            58999999999999999999997 443                   3444443222211    1111000   000000 


Q ss_pred             -c----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------C------CcEEEEEecCCc----cchHHHh
Q 036742          457 -P----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------D------SCKLILCCEDDV----DIIESVK  508 (629)
Q Consensus       457 -~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~------~~~~ILitN~~~----~I~~aLr  508 (629)
                       .    ...+.|+||||++...+++++.|..+++...             .      +..||+++|...    .+.++|+
T Consensus        57 ~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~  136 (139)
T PF07728_consen   57 GPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL  136 (139)
T ss_dssp             -CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred             ccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence             0    0124599999999999999999999987421             1      378899999888    6899999


Q ss_pred             hcc
Q 036742          509 THC  511 (629)
Q Consensus       509 SR~  511 (629)
                      +||
T Consensus       137 ~Rf  139 (139)
T PF07728_consen  137 DRF  139 (139)
T ss_dssp             TT-
T ss_pred             hhC
Confidence            997

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.06  E-value=5.4e-09  Score=111.83  Aligned_cols=190  Identities=17%  Similarity=0.127  Sum_probs=120.4

Q ss_pred             ccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742          360 FICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~  437 (629)
                      |+|.....+.+.+.+.  .....+|||+|++||||+++|++|.......                 ...++.+||.....
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-----------------~~pfv~vnc~~~~~   63 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-----------------QGPLVKLNCAALSE   63 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-----------------CCCeEEEeCCCCCh
Confidence            3455444444444433  1123369999999999999999998753211                 12377888853221


Q ss_pred             hHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEe
Q 036742          438 AKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCC  497 (629)
Q Consensus       438 ~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILit  497 (629)
                        ..+. .++......|..        .....+.+|||||||.|....|..|+++++...           .++++|+++
T Consensus        64 --~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at  141 (329)
T TIGR02974        64 --NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT  141 (329)
T ss_pred             --HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence              1111 122211111111        111234599999999999999999999997532           446888888


Q ss_pred             cCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHH----HHHHHhcC----CCCCHHHHHHHHHHc-cCCHHH
Q 036742          498 EDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVL----IQIARKED----FDLSMTFAAKIATKA-KQNLRK  557 (629)
Q Consensus       498 N~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL----~~i~~keg----l~is~e~L~~Ia~~s-~GDiR~  557 (629)
                      +..-       .+.+.|..|+.  .|.++|+-  .+++..++    .+.+.+.+    ..++++++..|.... .||+|.
T Consensus       142 ~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrE  221 (329)
T TIGR02974       142 NADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRE  221 (329)
T ss_pred             hhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHH
Confidence            7542       35677888884  56677665  34444433    33444433    357999999998886 799999


Q ss_pred             HHHHHHHHHhc
Q 036742          558 AIMALEACKAL  568 (629)
Q Consensus       558 AInlLq~~~~~  568 (629)
                      .-|.++.+...
T Consensus       222 L~n~i~~~~~~  232 (329)
T TIGR02974       222 LKNVVERSVYR  232 (329)
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.05  E-value=2.7e-09  Score=117.37  Aligned_cols=165  Identities=13%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc--cCCcceEEEeccc
Q 036742          357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV--ASSAHHVELNVNL  434 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i--~sS~~vleInas~  434 (629)
                      ++++++.++.++.+...+..+  .+++|+||||||||++|+.+|..+.+......  ...+.+..  .-...+--+.+. 
T Consensus       174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~--v~~VtFHpsySYeDFI~G~rP~-  248 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQR--VNMVQFHQSYSYEDFIQGYRPN-  248 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccce--eeEEeecccccHHHHhcccCCC-
Confidence            577888888888888888764  48999999999999999999998754321100  00000000  000000000000 


Q ss_pred             chhhHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhc----------------------cCCC
Q 036742          435 QANAKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDG----------------------YTDS  490 (629)
Q Consensus       435 ~~~~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe----------------------~~~~  490 (629)
                        +..... ...+.++...... ....+.|||||||++... .+...+..++|.                      .+.+
T Consensus       249 --~vgy~~~~G~f~~~~~~A~~-~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N  325 (459)
T PRK11331        249 --GVGFRRKDGIFYNFCQQAKE-QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN  325 (459)
T ss_pred             --CCCeEecCchHHHHHHHHHh-cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCC
Confidence              000000 0112222222111 122456999999999864 345566665552                      1245


Q ss_pred             cEEEEEecCCc----cchHHHhhcceEeeccC-CCHHHHHHHHH
Q 036742          491 CKLILCCEDDV----DIIESVKTHCKVIKVDP-PVTHEIMEVLI  529 (629)
Q Consensus       491 ~~~ILitN~~~----~I~~aLrSR~~~I~F~p-pt~eei~~iL~  529 (629)
                      +.||.|+|..+    .++.+|++|+..+++.+ ++...+...+.
T Consensus       326 l~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~  369 (459)
T PRK11331        326 VYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL  369 (459)
T ss_pred             eEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence            56888888876    48999999999998876 55555555543

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.02  E-value=4.9e-09  Score=113.90  Aligned_cols=200  Identities=16%  Similarity=0.183  Sum_probs=130.1

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      ...++++||.....+.+.+-++.-.  --++|+.|++||||+.+|++|.......                ..+.++.+|
T Consensus        74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~----------------~~~PFI~~N  137 (403)
T COG1221          74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR----------------AEAPFIAFN  137 (403)
T ss_pred             chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc----------------cCCCEEEEE
Confidence            3457899998876666666665421  1279999999999999999999432110                234488999


Q ss_pred             cccchhhHHHHHHHHHHHHHHhccCcC--------CCCeEEEEEccchhhHHHHHHHHHHHhc-----------cCCCcE
Q 036742          432 VNLQANAKYALMGLVKEIRDNLAITPE--------VSNAMIVIYEVDKAAEHIQYLIKWIMDG-----------YTDSCK  492 (629)
Q Consensus       432 as~~~~~k~~l~~~lrei~~~~~~~~~--------~~~kVIIIDEID~Ls~~~q~aLlrilEe-----------~~~~~~  492 (629)
                      |......-.. .++|.-....|.....        ..+++||+|||..|....|..|++++|+           ...+++
T Consensus       138 Ca~~~en~~~-~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR  216 (403)
T COG1221         138 CAAYSENLQE-AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR  216 (403)
T ss_pred             HHHhCcCHHH-HHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence            9543221111 1233333333333222        1245999999999999999999999996           236677


Q ss_pred             EEEEecCC--ccchH--HHhhcceE--eeccCCCHH--HHH----HHHHHHHHhcCCCC---CHHHHHHHHHH-ccCCHH
Q 036742          493 LILCCEDD--VDIIE--SVKTHCKV--IKVDPPVTH--EIM----EVLIQIARKEDFDL---SMTFAAKIATK-AKQNLR  556 (629)
Q Consensus       493 ~ILitN~~--~~I~~--aLrSR~~~--I~F~ppt~e--ei~----~iL~~i~~kegl~i---s~e~L~~Ia~~-s~GDiR  556 (629)
                      +|++|+..  ..+..  .|.+|+..  |.++++-..  ++.    -.|...|.+.+..+   +++++..+... ..||+|
T Consensus       217 li~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNir  296 (403)
T COG1221         217 LICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIR  296 (403)
T ss_pred             eeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHH
Confidence            88887753  33666  77777654  555555432  222    23455577766654   34556665544 689999


Q ss_pred             HHHHHHHHHHhcCC
Q 036742          557 KAIMALEACKALNY  570 (629)
Q Consensus       557 ~AInlLq~~~~~~~  570 (629)
                      ...|+++.+++...
T Consensus       297 ELkN~Ve~~~~~~~  310 (403)
T COG1221         297 ELKNLVERAVAQAS  310 (403)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998777654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.3e-08  Score=114.95  Aligned_cols=240  Identities=15%  Similarity=0.156  Sum_probs=142.1

Q ss_pred             CcccccHHHHHHHHHHH-HcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          358 NGFICHRHEAQLLKELV-VDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L-~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      .|++--+.+++...+.. .-. ..++|||+||+|||||.||+++++++.....                +++..+.|+.-
T Consensus       408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~----------------~hv~~v~Cs~l  471 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLI----------------AHVEIVSCSTL  471 (952)
T ss_pred             CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccc----------------eEEEEEechhc
Confidence            55554454444433321 111 1247999999999999999999999753322                23555666543


Q ss_pred             hhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHHhccC---CCcEEEEEe
Q 036742          436 ANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIMDGYT---DSCKLILCC  497 (629)
Q Consensus       436 ~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlrilEe~~---~~~~~ILit  497 (629)
                      .+.+ .-+...+.++   |...-...+.||++|++|.|..              ....+|...+..|.   ..+.||.+.
T Consensus       472 ~~~~~e~iQk~l~~v---fse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~  548 (952)
T KOG0735|consen  472 DGSSLEKIQKFLNNV---FSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG  548 (952)
T ss_pred             cchhHHHHHHHHHHH---HHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence            3322 1222333332   2223334456999999999933              11233445444443   334567777


Q ss_pred             cCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHhcCC--C
Q 036742          498 EDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL-EACKALNY--P  571 (629)
Q Consensus       498 N~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL-q~~~~~~~--~  571 (629)
                      +....|.+.|-+-  + .++.+++|...+..+||..++.+....+..+.++.++..+.|..-.-+.++ +.+.-.++  .
T Consensus       549 qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ler  628 (952)
T KOG0735|consen  549 QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLER  628 (952)
T ss_pred             hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Confidence            7777787777653  3 368899999999999999999987777778889999999998543333322 22211111  1


Q ss_pred             CCCC--CCCchhHHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHHHcC
Q 036742          572 FADD--QPIPLGWEEVLIELAAEILAD-----------PSPKRLVMVRGKIQKLLAEF  616 (629)
Q Consensus       572 ~~~~--~~~~~~~ek~l~ei~~~il~~-----------~s~~~L~~ir~kly~lL~~~  616 (629)
                      +..+  ..+..++.+.+..++-..+.+           ..+..+.++++.+.+.|.--
T Consensus       629 is~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P  686 (952)
T KOG0735|consen  629 ISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWP  686 (952)
T ss_pred             hccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhcc
Confidence            1222  122256666666554333222           24556677777777766543

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.00  E-value=1.3e-08  Score=108.86  Aligned_cols=195  Identities=14%  Similarity=0.109  Sum_probs=124.3

Q ss_pred             CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+++++|.......+.+.+..  ....+|||+|++||||+++|++|......                 ....++.++|.
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-----------------~~~pfv~v~c~   66 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-----------------WQGPFISLNCA   66 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------------cCCCeEEEeCC
Confidence            357899987766666555541  22336999999999999999998864211                 11237788885


Q ss_pred             cchhhHHHHHHHHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEE
Q 036742          434 LQANAKYALMGLVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLI  494 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~I  494 (629)
                      .... ..+-..++......+.        ......+.+|||||||.|....|..|..+++...           .+++||
T Consensus        67 ~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI  145 (326)
T PRK11608         67 ALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV  145 (326)
T ss_pred             CCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence            4221 1111112211111110        1112234599999999999999999999997432           246788


Q ss_pred             EEecCC-------ccchHHHhhcce--EeeccCCCH--HHHHHH----HHHHHHhcC----CCCCHHHHHHHHHHc-cCC
Q 036742          495 LCCEDD-------VDIIESVKTHCK--VIKVDPPVT--HEIMEV----LIQIARKED----FDLSMTFAAKIATKA-KQN  554 (629)
Q Consensus       495 LitN~~-------~~I~~aLrSR~~--~I~F~ppt~--eei~~i----L~~i~~keg----l~is~e~L~~Ia~~s-~GD  554 (629)
                      ++++..       ..+.+.|..|+.  .|.++|+-.  +++..+    |...+.+.+    ..++++++..|.... .||
T Consensus       146 ~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGN  225 (326)
T PRK11608        146 CATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGN  225 (326)
T ss_pred             EeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcH
Confidence            887753       235677888874  566776653  334333    333344433    257899999988774 699


Q ss_pred             HHHHHHHHHHHHhc
Q 036742          555 LRKAIMALEACKAL  568 (629)
Q Consensus       555 iR~AInlLq~~~~~  568 (629)
                      +|..-+.++.+...
T Consensus       226 vrEL~~vl~~a~~~  239 (326)
T PRK11608        226 IRELKNVVERSVYR  239 (326)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999986653

>smart00350 MCM minichromosome maintenance proteins

Probab=98.99  E-value=1.1e-08  Score=115.44  Aligned_cols=154  Identities=15%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             CcccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          358 NGFICHRHEAQLLKELVVDGNCP------------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p------------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      -+|.|++.++..|.-.+-.|..+            |+||+|+||+|||++|+++++......+ .          .....
T Consensus       203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~-~----------~~~~~  271 (509)
T smart00350      203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVY-T----------TGKGS  271 (509)
T ss_pred             ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceE-c----------CCCCC
Confidence            46889999887777666554311            8999999999999999999986421111 0          00000


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------  488 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------  488 (629)
                      ....+.+...+.       .   ....+.    ......+.+++|||+|.+....+.+|+..||...             
T Consensus       272 ~~~~l~~~~~~~-------~---~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~  341 (509)
T smart00350      272 SAVGLTAAVTRD-------P---ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN  341 (509)
T ss_pred             CcCCccccceEc-------c---CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence            000000000000       0   000010    0111234599999999999999999999997532             


Q ss_pred             CCcEEEEEecCCc-------------cchHHHhhcc-eE-eeccCCCHHHHHHHHHHHH
Q 036742          489 DSCKLILCCEDDV-------------DIIESVKTHC-KV-IKVDPPVTHEIMEVLIQIA  532 (629)
Q Consensus       489 ~~~~~ILitN~~~-------------~I~~aLrSR~-~~-I~F~ppt~eei~~iL~~i~  532 (629)
                      ..+.+|.++|...             .+.+++.+|| ++ +....++.+.-.+++.+++
T Consensus       342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~  400 (509)
T smart00350      342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence            4567888888642             4789999999 54 4446677766666666654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.98  E-value=1.4e-08  Score=117.53  Aligned_cols=197  Identities=12%  Similarity=0.108  Sum_probs=124.8

Q ss_pred             CCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          354 PSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      ..+|++++|.......+.+.++.  ....+|||+|++||||+++|++|.......                 ...++.+|
T Consensus       321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-----------------~~pfv~vn  383 (638)
T PRK11388        321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-----------------AGPYIAVN  383 (638)
T ss_pred             cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-----------------CCCeEEEE
Confidence            34789999987766655555541  222359999999999999999998764211                 12378888


Q ss_pred             cccchhhHHHHHHHHHHHHHHh-----ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742          432 VNLQANAKYALMGLVKEIRDNL-----AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL  495 (629)
Q Consensus       432 as~~~~~k~~l~~~lrei~~~~-----~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL  495 (629)
                      |..... ..+..+++.......     .......+.+||||||+.|....|..|+++++...           .++++|+
T Consensus       384 c~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~  462 (638)
T PRK11388        384 CQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA  462 (638)
T ss_pred             CCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence            853221 101112222110000     00011234599999999999999999999997532           1467888


Q ss_pred             EecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHHHHHH----HHhc--CCCCCHHHHHHHHHHc-cCCHHH
Q 036742          496 CCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEVLIQI----ARKE--DFDLSMTFAAKIATKA-KQNLRK  557 (629)
Q Consensus       496 itN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~iL~~i----~~ke--gl~is~e~L~~Ia~~s-~GDiR~  557 (629)
                      +|+..-       .+.+.|..|+.  .|.++|+-.  +++..++..+    +.+.  .+.++++++..|.... .||+|.
T Consensus       463 ~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvre  542 (638)
T PRK11388        463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFE  542 (638)
T ss_pred             eccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHH
Confidence            887542       24455666654  455666554  2344333333    3232  2468999999999887 799999


Q ss_pred             HHHHHHHHHhc
Q 036742          558 AIMALEACKAL  568 (629)
Q Consensus       558 AInlLq~~~~~  568 (629)
                      ..|.++.+...
T Consensus       543 L~~~l~~~~~~  553 (638)
T PRK11388        543 LRSVIENLALS  553 (638)
T ss_pred             HHHHHHHHHHh
Confidence            99999986654

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.98  E-value=2.2e-08  Score=115.24  Aligned_cols=104  Identities=13%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccC---------------------CCcEEEEEecCC--ccchHHHhhcce----Ee
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYT---------------------DSCKLILCCEDD--VDIIESVKTHCK----VI  514 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~---------------------~~~~~ILitN~~--~~I~~aLrSR~~----~I  514 (629)
                      .+|||||++.|....|..|++.++...                     -.+++|+++|..  ..++++|++|+.    .+
T Consensus       219 GtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v  298 (608)
T TIGR00764       219 GVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEV  298 (608)
T ss_pred             CEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEE
Confidence            499999999999999999999986321                     245678888754  458999999986    24


Q ss_pred             ecc---CCCHHHH---HHHHHHHHHhcC--CCCCHHHHHHHHHHcc----------CCHHHHHHHHHHH
Q 036742          515 KVD---PPVTHEI---MEVLIQIARKED--FDLSMTFAAKIATKAK----------QNLRKAIMALEAC  565 (629)
Q Consensus       515 ~F~---ppt~eei---~~iL~~i~~keg--l~is~e~L~~Ia~~s~----------GDiR~AInlLq~~  565 (629)
                      .|.   +.+.+..   ...+.+.+.+.|  ..++++++..|++...          .+.|..-+++..+
T Consensus       299 ~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A  367 (608)
T TIGR00764       299 YMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA  367 (608)
T ss_pred             EeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            443   2334433   445555555553  3578999988875422          3467777777765

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.97  E-value=8.7e-10  Score=107.34  Aligned_cols=105  Identities=19%  Similarity=0.294  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhcc-Cc
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI-TP  457 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~-~~  457 (629)
                      ..+||.||+|||||.+|+++|+.++ +...                 .++.++++..... ......+......... ..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~-----------------~~~~~d~s~~~~~-~~~~~~~~~l~~~~~~~v~   65 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSER-----------------PLIRIDMSEYSEG-DDVESSVSKLLGSPPGYVG   65 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCC-----------------EEEEEEGGGHCSH-HHCSCHCHHHHHHTTCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCcc-----------------chHHHhhhccccc-chHHhhhhhhhhcccceee
Confidence            4789999999999999999999997 3321                 2677777533220 0000111111111100 00


Q ss_pred             CCCCeEEEEEccchhhH-----------HHHHHHHHHHhccC-----------CCcEEEEEecCCcc
Q 036742          458 EVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYT-----------DSCKLILCCEDDVD  502 (629)
Q Consensus       458 ~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~-----------~~~~~ILitN~~~~  502 (629)
                      .....||||||||++.+           ++++.|++++|...           .++.||+|+|.-..
T Consensus        66 ~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~  132 (171)
T PF07724_consen   66 AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE  132 (171)
T ss_dssp             HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred             ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence            11123999999999999           99999999998532           56678999987554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.97  E-value=3.2e-08  Score=102.36  Aligned_cols=235  Identities=15%  Similarity=0.201  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742          364 RHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA  441 (629)
Q Consensus       364 e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~  441 (629)
                      +..++.|.++|..  .....+.|+|++|+|||+||..+++.......+.               .++.++.........+
T Consensus         2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~---------------~v~wv~~~~~~~~~~~   66 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD---------------GVIWVSLSKNPSLEQL   66 (287)
T ss_dssp             HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT---------------EEEEEEEES-SCCHHH
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc---------------cccccccccccccccc
Confidence            5567788888876  4555788999999999999999998732111110               1344444322222222


Q ss_pred             HHHHHHHHHHHhccC----------------cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchH
Q 036742          442 LMGLVKEIRDNLAIT----------------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE  505 (629)
Q Consensus       442 l~~~lrei~~~~~~~----------------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~  505 (629)
                      +..+++.+.......                -...+.+||||+++...  ....+...+-....++.||+||.... +..
T Consensus        67 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~  143 (287)
T PF00931_consen   67 LEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAG  143 (287)
T ss_dssp             HHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGT
T ss_pred             cccccccccccccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-ccc
Confidence            222222221110000                01225599999998876  22223333333345788888887643 333


Q ss_pred             HHhhcceEeeccCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCCCCCCchh
Q 036742          506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKED---FDLSMTFAAKIATKAKQNLRKAIMAL-EACKALNYPFADDQPIPLG  581 (629)
Q Consensus       506 aLrSR~~~I~F~ppt~eei~~iL~~i~~keg---l~is~e~L~~Ia~~s~GDiR~AInlL-q~~~~~~~~~~~~~~~~~~  581 (629)
                      .+......+.+.+++.++..+.+...+....   ....++....|++.|+|.+ -||.++ ..+....        ....
T Consensus       144 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~a~~l~~~~--------~~~~  214 (287)
T PF00931_consen  144 SLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP-LALKLIASYLRSKS--------TVDE  214 (287)
T ss_dssp             THHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H-HHHHHHHHHHHHHH--------SSSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc--------cccc
Confidence            3333367899999999999999998875443   1122456789999998854 444444 3332211        2256


Q ss_pred             HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          582 WEEVLIELAAEILADP-SPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       582 ~ek~l~ei~~~il~~~-s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      |+.++..+........ ....+......-|+.|..  ..+..|..|+
T Consensus       215 w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~  259 (287)
T PF00931_consen  215 WEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLS  259 (287)
T ss_dssp             HHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGG
T ss_pred             cccccccccccccccccccccccccceechhcCCc--cHHHHHhhCc
Confidence            8888877766553322 346666666666666665  3444555554

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK12377 putative replication protein; Provisional

Probab=98.96  E-value=9.8e-09  Score=105.69  Aligned_cols=130  Identities=15%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             hccCCCCCCccc----ccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          350 DKHQPSSLNGFI----CHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       350 eKyrP~tfddIi----G~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ..+.-.+|+.+.    |+..++...+.++..  ....+++|+||||||||+||.+||+++...+.               
T Consensus        66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~---------------  130 (248)
T PRK12377         66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR---------------  130 (248)
T ss_pred             cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------
Confidence            556677899886    333355555544431  22357999999999999999999999853322               


Q ss_pred             CcceEEEecccchh-hHHHHH--HHHHHHHHHhccCcCCCCeEEEEEccc--hhhHHHHHHHHHHHhc-cCCCcEEEEEe
Q 036742          424 SAHHVELNVNLQAN-AKYALM--GLVKEIRDNLAITPEVSNAMIVIYEVD--KAAEHIQYLIKWIMDG-YTDSCKLILCC  497 (629)
Q Consensus       424 S~~vleInas~~~~-~k~~l~--~~lrei~~~~~~~~~~~~kVIIIDEID--~Ls~~~q~aLlrilEe-~~~~~~~ILit  497 (629)
                        .++.+...+... .+....  ....++...+     ....||||||++  .++...+..|..+++. +....++|+|+
T Consensus       131 --~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l-----~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitS  203 (248)
T PRK12377        131 --SVIVVTVPDVMSRLHESYDNGQSGEKFLQEL-----CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLT  203 (248)
T ss_pred             --CeEEEEHHHHHHHHHHHHhccchHHHHHHHh-----cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence              144444421100 000000  0011111111     123499999995  4577788889999884 45568899999


Q ss_pred             cCCc
Q 036742          498 EDDV  501 (629)
Q Consensus       498 N~~~  501 (629)
                      |...
T Consensus       204 Nl~~  207 (248)
T PRK12377        204 NLNH  207 (248)
T ss_pred             CCCH
Confidence            9753

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=98.95  E-value=1.3e-08  Score=115.26  Aligned_cols=197  Identities=14%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      ...+|++++|.....+.+.+.++  ......|||+|++||||+++|+++-......                 ...++.+
T Consensus       199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-----------------~~pfv~i  261 (520)
T PRK10820        199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-----------------KKPFLAL  261 (520)
T ss_pred             ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-----------------CCCeEEe
Confidence            45689999998776555554443  2223469999999999999999976542111                 1236788


Q ss_pred             ecccchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CC
Q 036742          431 NVNLQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DS  490 (629)
Q Consensus       431 nas~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~  490 (629)
                      ||.....  ..+. +++......|..        .....+..|||||||.|+...|..|+++++...           .+
T Consensus       262 nca~~~~--~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~  339 (520)
T PRK10820        262 NCASIPD--DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD  339 (520)
T ss_pred             ccccCCH--HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence            8854321  1111 112111111110        001224589999999999999999999997531           24


Q ss_pred             cEEEEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-c
Q 036742          491 CKLILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-A  551 (629)
Q Consensus       491 ~~~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s  551 (629)
                      ++||++|+..-       .+.+.|..|+.  .+.++|+..  +++..    +|.+.+.+.+.   .++++++..|... .
T Consensus       340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~W  419 (520)
T PRK10820        340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGW  419 (520)
T ss_pred             eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCC
Confidence            57888776542       24567888864  566666654  23332    34455555543   6899999999888 7


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 036742          552 KQNLRKAIMALEACKAL  568 (629)
Q Consensus       552 ~GDiR~AInlLq~~~~~  568 (629)
                      .||+|+.-|.++.+...
T Consensus       420 PGNvreL~nvl~~a~~~  436 (520)
T PRK10820        420 PGNVRQLKNAIYRALTQ  436 (520)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            89999999999876653

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=98.94  E-value=1.9e-08  Score=113.87  Aligned_cols=203  Identities=13%  Similarity=0.139  Sum_probs=125.0

Q ss_pred             CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .+|++|+|.....+.+.+.+.  .....+|||+|++||||+++|++|-..+.-....         ........++.+||
T Consensus       216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~---------~S~r~~~pfv~inC  286 (538)
T PRK15424        216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDA---------RQGKKSHPFVAVNC  286 (538)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccc---------cCccCCCCeEEeec
Confidence            368999999888877777765  2233479999999999999999998762110000         00112334788888


Q ss_pred             ccchhhHHHHH-HHHHHHHHHhccCc---------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCc
Q 036742          433 NLQANAKYALM-GLVKEIRDNLAITP---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSC  491 (629)
Q Consensus       433 s~~~~~k~~l~-~~lrei~~~~~~~~---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~  491 (629)
                      .....  ..+. +++......|....         ...+..||||||+.|....|..|++++++..           .++
T Consensus       287 aal~e--~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dv  364 (538)
T PRK15424        287 GAIAE--SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV  364 (538)
T ss_pred             ccCCh--hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccce
Confidence            53221  1111 12221111111110         1234599999999999999999999997532           345


Q ss_pred             EEEEEecCCcc-------chHHHhhcce--EeeccCCCH--HHHHHHHHH----HHHhcCCCCCHHHHH-------HHHH
Q 036742          492 KLILCCEDDVD-------IIESVKTHCK--VIKVDPPVT--HEIMEVLIQ----IARKEDFDLSMTFAA-------KIAT  549 (629)
Q Consensus       492 ~~ILitN~~~~-------I~~aLrSR~~--~I~F~ppt~--eei~~iL~~----i~~kegl~is~e~L~-------~Ia~  549 (629)
                      ++|++|+..-.       +.+.|..|+.  .|.++|+-.  +++..++..    .+.+.+..++++++.       .|..
T Consensus       365 RiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~  444 (538)
T PRK15424        365 RVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH  444 (538)
T ss_pred             EEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh
Confidence            78888875421       3345666664  455666543  344433333    334456678877763       2322


Q ss_pred             H-ccCCHHHHHHHHHHHHhc
Q 036742          550 K-AKQNLRKAIMALEACKAL  568 (629)
Q Consensus       550 ~-s~GDiR~AInlLq~~~~~  568 (629)
                      . ..||+|..-|.++.+...
T Consensus       445 y~WPGNvREL~nvier~~i~  464 (538)
T PRK15424        445 YDWPGNVRELRNLMERLALF  464 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHh
Confidence            2 569999999999987653

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=98.94  E-value=2.6e-08  Score=112.53  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=127.6

Q ss_pred             CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+.+|+|+....+.+.+.+..  ....+|||+|++||||+++|++|.......                 ...++.+||.
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-----------------~~p~v~v~c~  247 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-----------------DKPLVYLNCA  247 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-----------------CCCeEEEEcc
Confidence            578899998877777766652  223379999999999999999999863211                 1237888885


Q ss_pred             cchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742          434 LQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL  493 (629)
Q Consensus       434 ~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~  493 (629)
                      ....  ..+. +++......|..        .....+.+|||||||.|....|..|+++++...           .++++
T Consensus       248 ~~~~--~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri  325 (509)
T PRK05022        248 ALPE--SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV  325 (509)
T ss_pred             cCCh--HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence            3321  1111 122211111111        011234589999999999999999999987432           25689


Q ss_pred             EEEecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCC
Q 036742          494 ILCCEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQN  554 (629)
Q Consensus       494 ILitN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GD  554 (629)
                      |++++..-       .+.+.|..|+.+  |.++|+-.  +++..+    |.+.+.+.+   +.++++++..|..+. .||
T Consensus       326 I~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN  405 (509)
T PRK05022        326 IAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN  405 (509)
T ss_pred             EEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence            99887642       255667777644  55666543  233332    333444433   568999999988774 699


Q ss_pred             HHHHHHHHHHHHhcC
Q 036742          555 LRKAIMALEACKALN  569 (629)
Q Consensus       555 iR~AInlLq~~~~~~  569 (629)
                      +|..-|.++.+....
T Consensus       406 vrEL~~~i~ra~~~~  420 (509)
T PRK05022        406 VRELEHVISRAALLA  420 (509)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999876644

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=98.94  E-value=1.6e-08  Score=114.39  Aligned_cols=195  Identities=16%  Similarity=0.128  Sum_probs=126.5

Q ss_pred             CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .+|++|+|.....+.+.+.++  .....+|||+|++||||+++|++|...-...                 ...++.+||
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-----------------~~pfv~inC  271 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-----------------DFPFVAINC  271 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-----------------CCCEEEecc
Confidence            568999999887777777765  2233479999999999999999998753111                 123788888


Q ss_pred             ccchhhHHHHH-HHHHHHHHHhccC---------cCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCc
Q 036742          433 NLQANAKYALM-GLVKEIRDNLAIT---------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSC  491 (629)
Q Consensus       433 s~~~~~k~~l~-~~lrei~~~~~~~---------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~  491 (629)
                      .....  ..+. +++......|...         ....+..||||||+.|....|..|++++++..           .++
T Consensus       272 ~~l~e--~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv  349 (526)
T TIGR02329       272 GAIAE--SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDV  349 (526)
T ss_pred             ccCCh--hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence            53221  1111 1222111111111         01234599999999999999999999997532           235


Q ss_pred             EEEEEecCCc-------cchHHHhhcc--eEeeccCCCH--HHHH----HHHHHHHHhcCCCCCHHHHHH-------HHH
Q 036742          492 KLILCCEDDV-------DIIESVKTHC--KVIKVDPPVT--HEIM----EVLIQIARKEDFDLSMTFAAK-------IAT  549 (629)
Q Consensus       492 ~~ILitN~~~-------~I~~aLrSR~--~~I~F~ppt~--eei~----~iL~~i~~kegl~is~e~L~~-------Ia~  549 (629)
                      ++|++++..-       .+.+.|-.|+  ..|.++|+-.  +++.    .+|.+.+...++.++++++..       |..
T Consensus       350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~  429 (526)
T TIGR02329       350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR  429 (526)
T ss_pred             eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh
Confidence            7888887642       2344555665  4566776654  3433    334444445566788888776       544


Q ss_pred             H-ccCCHHHHHHHHHHHHhc
Q 036742          550 K-AKQNLRKAIMALEACKAL  568 (629)
Q Consensus       550 ~-s~GDiR~AInlLq~~~~~  568 (629)
                      . ..||+|..-|.++.+...
T Consensus       430 y~WPGNvrEL~nvier~~i~  449 (526)
T TIGR02329       430 YPWPGNVRELRNLVERLALE  449 (526)
T ss_pred             CCCCchHHHHHHHHHHHHHh
Confidence            4 469999999999987653

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.93  E-value=1.9e-08  Score=103.35  Aligned_cols=148  Identities=17%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             hhccCCCCCCcccc----cHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          349 ADKHQPSSLNGFIC----HRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       349 ~eKyrP~tfddIiG----~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+.|+..+|+++..    +..++..+.+++..  ....+++|+|+||||||+||.+||.++.....              
T Consensus        63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~--------------  128 (244)
T PRK07952         63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK--------------  128 (244)
T ss_pred             CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC--------------
Confidence            36778899999863    23466666666653  22357999999999999999999999853221              


Q ss_pred             CCcceEEEecccchh-hHHHH---HHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHh-ccCCCcEEEE
Q 036742          423 SSAHHVELNVNLQAN-AKYAL---MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMD-GYTDSCKLIL  495 (629)
Q Consensus       423 sS~~vleInas~~~~-~k~~l---~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilE-e~~~~~~~IL  495 (629)
                         .++.+...+... .+...   ......+...+.     ...||||||++...  ......|..+++ .+....++|+
T Consensus       129 ---~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-----~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii  200 (244)
T PRK07952        129 ---SVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-----NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM  200 (244)
T ss_pred             ---eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-----cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence               145554422110 00000   000111111111     23499999998873  345567778887 4556788999


Q ss_pred             EecCCcc-----chHHHhhcc-----eEeeccC
Q 036742          496 CCEDDVD-----IIESVKTHC-----KVIKVDP  518 (629)
Q Consensus       496 itN~~~~-----I~~aLrSR~-----~~I~F~p  518 (629)
                      ++|....     +.+.+.+|+     ..+.|..
T Consensus       201 tSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~  233 (244)
T PRK07952        201 LTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNW  233 (244)
T ss_pred             eCCCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence            9997543     334444544     3556654

>PRK08116 hypothetical protein; Validated

Probab=98.90  E-value=1.2e-08  Score=106.09  Aligned_cols=150  Identities=15%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             hccCCCCCCcccccHH---HHHHHHHHHH----cC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          350 DKHQPSSLNGFICHRH---EAQLLKELVV----DG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       350 eKyrP~tfddIiG~e~---~~~~Lk~~L~----~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      .+|+-.+|+++...+.   ++...++++.    .. ...+++|+|++|+|||+||.+||+++.....             
T Consensus        77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~-------------  143 (268)
T PRK08116         77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGV-------------  143 (268)
T ss_pred             HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence            5666678888764332   4444454443    11 2236999999999999999999999853321             


Q ss_pred             cCCcceEEEecccch-hhHHHHH----HHHHHHHHHhccCcCCCCeEEEEEcc--chhhHHHHHHHHHHHhc-cCCCcEE
Q 036742          422 ASSAHHVELNVNLQA-NAKYALM----GLVKEIRDNLAITPEVSNAMIVIYEV--DKAAEHIQYLIKWIMDG-YTDSCKL  493 (629)
Q Consensus       422 ~sS~~vleInas~~~-~~k~~l~----~~lrei~~~~~~~~~~~~kVIIIDEI--D~Ls~~~q~aLlrilEe-~~~~~~~  493 (629)
                          .++.++..... .+.....    ....++...+.     ...+|||||+  +..+...+..|..+++. +....++
T Consensus       144 ----~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-----~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~  214 (268)
T PRK08116        144 ----PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-----NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPT  214 (268)
T ss_pred             ----eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-----CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence                14555542110 0000000    00011111111     2249999999  55677777888888873 5566789


Q ss_pred             EEEecCCcc-----chHHHhhc----ceEeeccCCCH
Q 036742          494 ILCCEDDVD-----IIESVKTH----CKVIKVDPPVT  521 (629)
Q Consensus       494 ILitN~~~~-----I~~aLrSR----~~~I~F~ppt~  521 (629)
                      |+|||....     +...+.+|    |..|.|..++.
T Consensus       215 IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        215 IVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             EEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            999998643     35567777    56788876653

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.90  E-value=3.3e-08  Score=113.51  Aligned_cols=195  Identities=13%  Similarity=0.101  Sum_probs=119.1

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec--ccchhhHHHHHHHHHHHHH-H
Q 036742          376 DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV--NLQANAKYALMGLVKEIRD-N  452 (629)
Q Consensus       376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna--s~~~~~k~~l~~~lrei~~-~  452 (629)
                      ...+.||||.|+||||||++|++|+..+.....                  ++.+..  ....-...+  ++...+.. .
T Consensus        13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~p------------------fv~i~~~~t~d~L~G~i--dl~~~~~~g~   72 (589)
T TIGR02031        13 DPSLGGVAIRARAGTGKTALARALAEILPPIMP------------------FVELPLGVTEDRLIGGI--DVEESLAGGQ   72 (589)
T ss_pred             CCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCC------------------eEecCcccchhhcccch--hhhhhhhcCc
Confidence            344779999999999999999999997533211                  222221  111000000  00000000 0


Q ss_pred             hc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEEEEEecCCc---cchHHHhhcce
Q 036742          453 LA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKLILCCEDDV---DIIESVKTHCK  512 (629)
Q Consensus       453 ~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~ILitN~~~---~I~~aLrSR~~  512 (629)
                      +.    ......+.|||||||+.+....++.|+..|++..             ..+.+|.++|...   .+.++|..|+.
T Consensus        73 ~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~  152 (589)
T TIGR02031        73 RVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLA  152 (589)
T ss_pred             ccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhcc
Confidence            00    1111233599999999999999999999998542             3456777777654   58899999985


Q ss_pred             E-eecc-CCCHHHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHHc---c-CCHHHHHHHHH
Q 036742          513 V-IKVD-PPVTHEIMEVLIQIA-----------------------RKEDFDLSMTFAAKIATKA---K-QNLRKAIMALE  563 (629)
Q Consensus       513 ~-I~F~-ppt~eei~~iL~~i~-----------------------~kegl~is~e~L~~Ia~~s---~-GDiR~AInlLq  563 (629)
                      . +.+. .++.++..+++.+..                       ....+.++++++.+|++.+   + ..+|..+.++.
T Consensus       153 l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r  232 (589)
T TIGR02031       153 LHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVR  232 (589)
T ss_pred             CeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence            3 4443 334444445444321                       1134678898888887764   2 23788888888


Q ss_pred             HHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          564 ACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      .+.+.+.-...+..++.|+..++.-+.
T Consensus       233 ~ArA~Aal~gr~~V~~~Dv~~a~~lvl  259 (589)
T TIGR02031       233 AAKAHAALHGRTEVTEEDLKLAVELVL  259 (589)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence            877766655566667777666655443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=98.89  E-value=4.5e-08  Score=114.41  Aligned_cols=195  Identities=16%  Similarity=0.173  Sum_probs=123.1

Q ss_pred             CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      ..|++++|.....+.+.+.+.  .....+|||+|++|||||++|++|.......                 ...++.++|
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-----------------~~~~v~i~c  435 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-----------------NRRMVKMNC  435 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-----------------CCCeEEEec
Confidence            468899999887776655554  1223379999999999999999998764211                 123677887


Q ss_pred             ccchhhHHHHH-HHHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcE
Q 036742          433 NLQANAKYALM-GLVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCK  492 (629)
Q Consensus       433 s~~~~~k~~l~-~~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~  492 (629)
                      .....  ..+. .++......+.        ......+.+||||||+.|....|..|+++++...           .+++
T Consensus       436 ~~~~~--~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R  513 (686)
T PRK15429        436 AAMPA--GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR  513 (686)
T ss_pred             ccCCh--hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence            43211  0111 11111000000        0011224599999999999999999999997532           3568


Q ss_pred             EEEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-ccC
Q 036742          493 LILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-AKQ  553 (629)
Q Consensus       493 ~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s~G  553 (629)
                      +|++++..-       .+...|..|+.  .|.++|+-.  +++..    +|.+++.+.+.   .++++++..|... ..|
T Consensus       514 iI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPG  593 (686)
T PRK15429        514 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPG  593 (686)
T ss_pred             EEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence            888887642       23445666654  455666543  33332    33344444333   4789999998776 469


Q ss_pred             CHHHHHHHHHHHHhc
Q 036742          554 NLRKAIMALEACKAL  568 (629)
Q Consensus       554 DiR~AInlLq~~~~~  568 (629)
                      |+|..-+.++.+...
T Consensus       594 NvrEL~~~i~~a~~~  608 (686)
T PRK15429        594 NVRELENVIERAVLL  608 (686)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999987653

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.87  E-value=5e-09  Score=104.53  Aligned_cols=46  Identities=24%  Similarity=0.418  Sum_probs=38.8

Q ss_pred             CCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          356 SLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.||+||+.++..|.-+...+  .|+||+||||||||++|+++...|
T Consensus         1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred             ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence            4799999999999999888865  489999999999999999999765

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.87  E-value=8e-08  Score=110.70  Aligned_cols=52  Identities=21%  Similarity=0.407  Sum_probs=46.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|..+++|+||+++++.|..++..+.  +++|+||||||||++|++++..+.+.
T Consensus        26 ~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~   77 (637)
T PRK13765         26 PERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             CcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence            46677999999999999999998774  89999999999999999999987543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.84  E-value=1.1e-07  Score=96.12  Aligned_cols=190  Identities=16%  Similarity=0.179  Sum_probs=127.4

Q ss_pred             hccCCCCCCcccccHHHHHHHH----HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLK----ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk----~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ..+-|..+.+|+|-+..++.|.    ++++.-...|+||+|--||||+++++|+..++...+.                 
T Consensus        52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl-----------------  114 (287)
T COG2607          52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL-----------------  114 (287)
T ss_pred             CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC-----------------
Confidence            4667788999999887666554    4555555669999999999999999999999865543                 


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHHHHHHh----ccCCCcEEEEEecCC
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLIKWIMD----GYTDSCKLILCCEDD  500 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aLlrilE----e~~~~~~~ILitN~~  500 (629)
                      ..+||+..+-.... .+.+.++.         ...+-|||.||.--=. ....-+|..++|    ..+.++.|..|+|+.
T Consensus       115 rLVEV~k~dl~~Lp-~l~~~Lr~---------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR  184 (287)
T COG2607         115 RLVEVDKEDLATLP-DLVELLRA---------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR  184 (287)
T ss_pred             eEEEEcHHHHhhHH-HHHHHHhc---------CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence            26787765433221 12222222         1223488988764432 234445555554    456777788888887


Q ss_pred             ccchHH----------------------Hhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH-----HHcc
Q 036742          501 VDIIES----------------------VKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIA-----TKAK  552 (629)
Q Consensus       501 ~~I~~a----------------------LrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia-----~~s~  552 (629)
                      +.|.+.                      |-.|| +.+.|.+++.++..+++...+++.++.++++.+..-|     ...+
T Consensus       185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~  264 (287)
T COG2607         185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG  264 (287)
T ss_pred             ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence            655432                      23455 5799999999999999999999999999876655433     2334


Q ss_pred             CCHHHHHHHHHHHH
Q 036742          553 QNLRKAIMALEACK  566 (629)
Q Consensus       553 GDiR~AInlLq~~~  566 (629)
                      .+-|.|-..++.++
T Consensus       265 RSGR~A~QF~~~~~  278 (287)
T COG2607         265 RSGRVAWQFIRDLA  278 (287)
T ss_pred             CccHhHHHHHHHHH
Confidence            45566665555443

>TIGR00368 Mg chelatase-related protein

Probab=98.80  E-value=8.7e-08  Score=107.79  Aligned_cols=151  Identities=13%  Similarity=0.077  Sum_probs=92.7

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-  433 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-  433 (629)
                      ..|+||.|+..+++.+.-.+..+.  +++|.||||||||++|++++..+.....                ...++.... 
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp~~~~----------------~~~le~~~i~  250 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILPPLTN----------------EEAIETARIW  250 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccCCCCC----------------cEEEeccccc
Confidence            378999999999888887776553  7999999999999999999986522111                001111110 


Q ss_pred             cchhh------------H-----HHHHHHHHHHHH-HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------
Q 036742          434 LQANA------------K-----YALMGLVKEIRD-NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------  488 (629)
Q Consensus       434 ~~~~~------------k-----~~l~~~lrei~~-~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------  488 (629)
                      ...+.            .     ......+..-.. .-.......+.||||||++.+....++.|+..||...       
T Consensus       251 s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g  330 (499)
T TIGR00368       251 SLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRAS  330 (499)
T ss_pred             cchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecC
Confidence            00000            0     000000000000 0000001123599999999999999999999997532       


Q ss_pred             ------CCcEEEEEecCC------c-----------------cchHHHhhcc-eEeeccCCCHHH
Q 036742          489 ------DSCKLILCCEDD------V-----------------DIIESVKTHC-KVIKVDPPVTHE  523 (629)
Q Consensus       489 ------~~~~~ILitN~~------~-----------------~I~~aLrSR~-~~I~F~ppt~ee  523 (629)
                            ..+.+|+++|.-      .                 +|..+|++|+ ..+.+.+++.++
T Consensus       331 ~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~  395 (499)
T TIGR00368       331 AKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK  395 (499)
T ss_pred             cceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence                  456788888752      1                 4778899998 456777665443

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.80  E-value=4e-08  Score=87.78  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=57.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhH---------------HHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK---------------YALMG  444 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k---------------~~l~~  444 (629)
                      .+++|+||||||||++++.+|..+....                 ..++.+++.......               .....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG-----------------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL   65 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC-----------------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHH
Confidence            4799999999999999999999875432                 014555543211100               00011


Q ss_pred             HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHH--------HHhccCCCcEEEEEecC
Q 036742          445 LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKW--------IMDGYTDSCKLILCCED  499 (629)
Q Consensus       445 ~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlr--------ilEe~~~~~~~ILitN~  499 (629)
                      .++........   ....||||||++.+..........        ..........+|+++|.
T Consensus        66 ~~~~~~~~~~~---~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       66 RLRLALALARK---LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             HHHHHHHHHHh---cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            11211111111   114699999999996654443322        23344567788889886

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.79  E-value=2.1e-08  Score=92.92  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=56.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH-----HHHHhcc
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE-----IRDNLAI  455 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre-----i~~~~~~  455 (629)
                      |+||.|+||+|||++|+++|+.+ +..+.                 -+...+...-.      +++..     ....+..
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~-~~~f~-----------------RIq~tpdllPs------Di~G~~v~~~~~~~f~~   56 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSL-GLSFK-----------------RIQFTPDLLPS------DILGFPVYDQETGEFEF   56 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHT-T--EE-----------------EEE--TT--HH------HHHEEEEEETTTTEEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHc-CCcee-----------------EEEecCCCCcc------cceeeeeeccCCCeeEe
Confidence            79999999999999999999997 43320                 11111110000      11100     0001111


Q ss_pred             C-cCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecCCc-----cchHHHhhcce
Q 036742          456 T-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCEDDV-----DIIESVKTHCK  512 (629)
Q Consensus       456 ~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~~~-----~I~~aLrSR~~  512 (629)
                      . +.....|+++||+.+..+..|.+|+..|++..           ....||.|-|..+     .+.++++.|+.
T Consensus        57 ~~GPif~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   57 RPGPIFTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM  130 (131)
T ss_dssp             EE-TT-SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred             ecChhhhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence            0 11123499999999999999999999998643           2233444556544     37888888874

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK06921 hypothetical protein; Provisional

Probab=98.78  E-value=9e-08  Score=99.61  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHhCC-CCCCCCCCccccccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhcc
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIYGD-ACWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAI  455 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~-~~~~~~~~~~v~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~  455 (629)
                      ...+++|+||+|+|||+||.+||+++... +.                 .++++...+... ..... +.+.+....+  
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~-----------------~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--  175 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV-----------------PVLYFPFVEGFGDLKDDF-DLLEAKLNRM--  175 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc-----------------eEEEEEHHHHHHHHHHHH-HHHHHHHHHh--
Confidence            34679999999999999999999997532 21                 256665522111 00000 1111111111  


Q ss_pred             CcCCCCeEEEEEccch-------hhHHHHHHHHHHHhcc-CCCcEEEEEecCCcc----chHHHhhc
Q 036742          456 TPEVSNAMIVIYEVDK-------AAEHIQYLIKWIMDGY-TDSCKLILCCEDDVD----IIESVKTH  510 (629)
Q Consensus       456 ~~~~~~kVIIIDEID~-------Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~~----I~~aLrSR  510 (629)
                         ....||||||++.       ++......|..+++.. ....++|+++|....    +.+.|.+|
T Consensus       176 ---~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sR  239 (266)
T PRK06921        176 ---KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR  239 (266)
T ss_pred             ---cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHH
Confidence               1234999999944       3444556677777643 345678999987533    23455554

>PF13173 AAA_14: AAA domain

Probab=98.78  E-value=6e-08  Score=89.42  Aligned_cols=121  Identities=20%  Similarity=0.251  Sum_probs=80.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV  459 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~  459 (629)
                      +.++|+||.||||||+++.+++.+....                  .+++++..+.........+....+.+..    ..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~------------------~~~yi~~~~~~~~~~~~~~~~~~~~~~~----~~   60 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPE------------------NILYINFDDPRDRRLADPDLLEYFLELI----KP   60 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccc------------------cceeeccCCHHHHHHhhhhhHHHHHHhh----cc
Confidence            4689999999999999999999874111                  2677777544332111011112222211    11


Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc----chHHHhhcceEeeccCCCHHHH
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD----IIESVKTHCKVIKVDPPVTHEI  524 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~----I~~aLrSR~~~I~F~ppt~eei  524 (629)
                      ...+||||||+.+. +....+..+.+.. .++.||+++.....    +.+.+..|...+++.|++-.|.
T Consensus        61 ~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   61 GKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             CCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            45699999999995 5667777777754 56788888766544    3466778889999999987764

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=98.77  E-value=2e-07  Score=103.11  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=133.6

Q ss_pred             CCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          355 SSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      ....+++|+..+.+.|.+.+.+  ...-.|||+|++||||-.+|++|-..-..                 ....++.|||
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-----------------~~~PFVavNc  200 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-----------------AKGPFIAVNC  200 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-----------------cCCCceeeec
Confidence            3568899998888888877752  22336999999999999999999876311                 1223788888


Q ss_pred             ccchhhHHHHHH-HHHHHHHHhccCcC--------CCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcE
Q 036742          433 NLQANAKYALMG-LVKEIRDNLAITPE--------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCK  492 (629)
Q Consensus       433 s~~~~~k~~l~~-~lrei~~~~~~~~~--------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~  492 (629)
                      ..-..  .+++. +|..-...|.....        ..+..||||||..|.-+.|.-|++++++-.           -+++
T Consensus       201 aAip~--~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR  278 (464)
T COG2204         201 AAIPE--NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR  278 (464)
T ss_pred             ccCCH--HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence            42221  12222 22222222222211        124499999999999999999999998532           3467


Q ss_pred             EEEEecCCc-------cchHHHhhcceEeeccCCCHHH----H----HHHHHHHHHhcCC---CCCHHHHHHHHHH-ccC
Q 036742          493 LILCCEDDV-------DIIESVKTHCKVIKVDPPVTHE----I----MEVLIQIARKEDF---DLSMTFAAKIATK-AKQ  553 (629)
Q Consensus       493 ~ILitN~~~-------~I~~aLrSR~~~I~F~ppt~ee----i----~~iL~~i~~kegl---~is~e~L~~Ia~~-s~G  553 (629)
                      ||.+||..-       .+-+.|-.|+.++.+.-|+-.+    |    ...|++.|...+.   .++++++..|..+ ..|
T Consensus       279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG  358 (464)
T COG2204         279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG  358 (464)
T ss_pred             EEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh
Confidence            888888642       2567888888877665555433    2    2445556665544   6789999888776 469


Q ss_pred             CHHHHHHHHHHHHhcCC
Q 036742          554 NLRKAIMALEACKALNY  570 (629)
Q Consensus       554 DiR~AInlLq~~~~~~~  570 (629)
                      |+|..-|.++.+.....
T Consensus       359 NVREL~N~ver~~il~~  375 (464)
T COG2204         359 NVRELENVVERAVILSE  375 (464)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999998776543

>PRK08181 transposase; Validated

Probab=98.77  E-value=4.4e-08  Score=102.03  Aligned_cols=108  Identities=10%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh-hHHH-HHHHHH
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYA-LMGLVK  447 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~-~k~~-l~~~lr  447 (629)
                      +..|+..+  .+++|+||||||||+||.+++.++...+.                 .++++.+.+... .... ....+.
T Consensus        99 ~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-----------------~v~f~~~~~L~~~l~~a~~~~~~~  159 (269)
T PRK08181         99 GDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW-----------------RVLFTRTTDLVQKLQVARRELQLE  159 (269)
T ss_pred             HHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC-----------------ceeeeeHHHHHHHHHHHHhCCcHH
Confidence            34677754  47999999999999999999998743321                 144444421100 0000 000001


Q ss_pred             HHHHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          448 EIRDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       448 ei~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .....+     ....+|||||++.+  ....+..|..+++..-....+|+++|.+.
T Consensus       160 ~~l~~l-----~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~  210 (269)
T PRK08181        160 SAIAKL-----DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF  210 (269)
T ss_pred             HHHHHH-----hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence            111111     12349999999887  34556678888874333468999998753

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.76  E-value=2.3e-07  Score=102.50  Aligned_cols=194  Identities=15%  Similarity=0.159  Sum_probs=121.9

Q ss_pred             CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+.+++|.....+.+...+..  ....+++|+|++||||+++|+++.......                 ...++.++|.
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~v~v~c~  199 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-----------------DKRFVAINCA  199 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-----------------CCCeEEEECC
Confidence            456788877666666655542  223468999999999999999998763211                 1226778875


Q ss_pred             cchhhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742          434 LQANAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL  493 (629)
Q Consensus       434 ~~~~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~  493 (629)
                      ....  ..+... +......|..        .....+.+||||||+.|....|..|+++++...           .++++
T Consensus       200 ~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri  277 (445)
T TIGR02915       200 AIPE--NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI  277 (445)
T ss_pred             CCCh--HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence            3321  111111 1111111110        011234599999999999999999999997432           25688


Q ss_pred             EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHHc-cCC
Q 036742          494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKED---FDLSMTFAAKIATKA-KQN  554 (629)
Q Consensus       494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~keg---l~is~e~L~~Ia~~s-~GD  554 (629)
                      |++++..-       .+.+.|..|+.  .|.++|+-.  +++..    +|.+.+.+.+   ..++++++..|.... .||
T Consensus       278 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN  357 (445)
T TIGR02915       278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN  357 (445)
T ss_pred             EEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence            88887642       24566767765  455555543  23322    3333444333   458999999988775 799


Q ss_pred             HHHHHHHHHHHHhc
Q 036742          555 LRKAIMALEACKAL  568 (629)
Q Consensus       555 iR~AInlLq~~~~~  568 (629)
                      +|..-+.++.+...
T Consensus       358 vreL~~~i~~a~~~  371 (445)
T TIGR02915       358 VRELENKVKRAVIM  371 (445)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.75  E-value=2.6e-07  Score=97.02  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=114.5

Q ss_pred             cccHHH---HHHHHHHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742          361 ICHRHE---AQLLKELVV---DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       361 iG~e~~---~~~Lk~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      ||.+.+   ++.|.+++.   ..++|++||+|++|.|||++++.+++. +......+ .         ....|+.+.+-.
T Consensus        37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~-~---------~~~PVv~vq~P~  105 (302)
T PF05621_consen   37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDED-A---------ERIPVVYVQMPP  105 (302)
T ss_pred             ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCC-C---------ccccEEEEecCC
Confidence            666654   455556564   456789999999999999999999986 33322111 0         011344444311


Q ss_pred             chhhHHHHHHHHHHHHHHh--------------ccCcCCCCeEEEEEccchhh-------HHHHHHHHHHHhccCCCcEE
Q 036742          435 QANAKYALMGLVKEIRDNL--------------AITPEVSNAMIVIYEVDKAA-------EHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       435 ~~~~k~~l~~~lrei~~~~--------------~~~~~~~~kVIIIDEID~Ls-------~~~q~aLlrilEe~~~~~~~  493 (629)
                      ..+...+...++..+..-+              ......+-++|||||++.+.       ....++|+.+-++  -.+++
T Consensus       106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipi  183 (302)
T PF05621_consen  106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPI  183 (302)
T ss_pred             CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCe
Confidence            1111111112222111100              11112234599999999972       2344555555443  34566


Q ss_pred             EEEecCCc----cchHHHhhcceEeeccCCCHH-HHHHHHHHHHHhcCC----CC-CHHHHHHHHHHccCCHHHHHHHHH
Q 036742          494 ILCCEDDV----DIIESVKTHCKVIKVDPPVTH-EIMEVLIQIARKEDF----DL-SMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       494 ILitN~~~----~I~~aLrSR~~~I~F~ppt~e-ei~~iL~~i~~kegl----~i-s~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      |++....-    .-++.+.+|+..+.+++...+ +....|...-....+    .+ +++....|...++|.+.....+|.
T Consensus       184 V~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~  263 (302)
T PF05621_consen  184 VGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLN  263 (302)
T ss_pred             EEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHH
Confidence            66654321    136889999999999877654 444444443322111    22 456678999999999999999999


Q ss_pred             HHHhcCC
Q 036742          564 ACKALNY  570 (629)
Q Consensus       564 ~~~~~~~  570 (629)
                      .++..+.
T Consensus       264 ~aA~~AI  270 (302)
T PF05621_consen  264 AAAIAAI  270 (302)
T ss_pred             HHHHHHH
Confidence            8776554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14700 recombination factor protein RarA; Provisional

Probab=98.73  E-value=2e-07  Score=97.46  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=91.2

Q ss_pred             CcEEEEEecC-C-ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742          490 SCKLILCCED-D-VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE------DFDLSMTFAAKIATKAKQNLRKAIMA  561 (629)
Q Consensus       490 ~~~~ILitN~-~-~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke------gl~is~e~L~~Ia~~s~GDiR~AInl  561 (629)
                      .+.+|.+|+. | ..+.++|+|||.++.|.+++.+++..+|++.+..+      .+.+++++++.|++.++||.|.++|+
T Consensus         8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~   87 (300)
T PRK14700          8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL   87 (300)
T ss_pred             cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence            3445555433 3 35899999999999999999999999999988642      36789999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHhcC-C-C----hHHHHHHHH--------HHHHHHHcCCCHHHHHHHHh
Q 036742          562 LEACKALNYPFADDQPIPLGWEEVLIELAAEILAD-P-S----PKRLVMVRG--------KIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       562 Lq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~il~~-~-s----~~~L~~ir~--------kly~lL~~~i~~~~i~~~La  627 (629)
                      |+.+......-.....+...+++.+..-.....+. + -    ...++++|+        .+..+|..+.+|.+|+.+|-
T Consensus        88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi  167 (300)
T PRK14700         88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML  167 (300)
T ss_pred             HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99965321110001122233333332211111111 1 0    111233333        45668999999999999885


Q ss_pred             c
Q 036742          628 Y  628 (629)
Q Consensus       628 ~  628 (629)
                      .
T Consensus       168 i  168 (300)
T PRK14700        168 C  168 (300)
T ss_pred             H
Confidence            3

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.71  E-value=3.4e-07  Score=98.55  Aligned_cols=87  Identities=11%  Similarity=0.017  Sum_probs=60.4

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecCC-------ccchHHHhhcceEeeccCCCH-H
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCEDD-------VDIIESVKTHCKVIKVDPPVT-H  522 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~~-------~~I~~aLrSR~~~I~F~ppt~-e  522 (629)
                      .|+-|+|++....+.++.|+.++++..           -...||.++|..       .+..++|++||..+.++.+.. .
T Consensus       238 Gi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~  317 (361)
T smart00763      238 GILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVS  317 (361)
T ss_pred             ceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHH
Confidence            499999999999999999999988532           112345566665       256899999999988876653 4


Q ss_pred             HHHHHHHHHHHhc---CCCCCHHHHHHHH
Q 036742          523 EIMEVLIQIARKE---DFDLSMTFAAKIA  548 (629)
Q Consensus       523 ei~~iL~~i~~ke---gl~is~e~L~~Ia  548 (629)
                      +-.+|.++.+...   +..+.+.++..++
T Consensus       318 ~E~~Iy~k~~~~s~~~~~~~aP~~le~aa  346 (361)
T smart00763      318 EEAQIYEKLLRNSDLTEAHIAPHTLEMAA  346 (361)
T ss_pred             HHHHHHHHHhccCcCcccccCchHHHHHH
Confidence            4456666655433   4556666555544

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.71  E-value=1.5e-07  Score=91.50  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=71.4

Q ss_pred             ccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742          360 FICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~  437 (629)
                      |+|.......+.+.++.  ....+|||+|++||||+.+|++|-.....                 ....++.+||.....
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-----------------~~~pfi~vnc~~~~~   63 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-----------------KNGPFISVNCAALPE   63 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-----------------TTS-EEEEETTTS-H
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-----------------ccCCeEEEehhhhhc
Confidence            46666655555555542  22247999999999999999999874211                 123478999964322


Q ss_pred             hHHHHHHHHHHHHHHhccC--------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEEEEEec
Q 036742          438 AKYALMGLVKEIRDNLAIT--------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKLILCCE  498 (629)
Q Consensus       438 ~k~~l~~~lrei~~~~~~~--------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~ILitN  498 (629)
                      . .+-.+++......+...        ....+.+||||||+.|....|..|+++++..           ..+++||++|+
T Consensus        64 ~-~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~  142 (168)
T PF00158_consen   64 E-LLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS  142 (168)
T ss_dssp             H-HHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred             c-hhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence            1 01111111110011000        0113459999999999999999999999842           13678899888


Q ss_pred             CC
Q 036742          499 DD  500 (629)
Q Consensus       499 ~~  500 (629)
                      ..
T Consensus       143 ~~  144 (168)
T PF00158_consen  143 KD  144 (168)
T ss_dssp             S-
T ss_pred             cC
Confidence            54

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.2e-07  Score=96.01  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             ccccHHHHHHHHHHHH--------cCC-------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          360 FICHRHEAQLLKELVV--------DGN-------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~--------~g~-------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ++||+.+++.|.-++-        ...       ..+|||.||.|||||.||+.+|+.|.-+...-+      .-.....
T Consensus        63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD------ATtLTEA  136 (408)
T COG1219          63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD------ATTLTEA  136 (408)
T ss_pred             eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc------ccchhhc
Confidence            6799988876653331        111       137999999999999999999999854421000      0000111


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhh--------------HHHHHHHHHHHhc
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAA--------------EHIQYLIKWIMDG  486 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls--------------~~~q~aLlrilEe  486 (629)
                      +||           ..-++.++-.+++.....- .....||+|||||.+.              +++|.+|++++|.
T Consensus       137 GYV-----------GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG  202 (408)
T COG1219         137 GYV-----------GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG  202 (408)
T ss_pred             ccc-----------chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence            111           1123344444444333221 1234599999999993              4789999999985

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=98.68  E-value=3.2e-07  Score=102.02  Aligned_cols=198  Identities=16%  Similarity=0.148  Sum_probs=129.6

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      .+...+|++|+|.......+.+.++..  ....|||.|.+||||-.+|++|-+.-. -                ..+.++
T Consensus       238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~-R----------------~~~PFI  300 (560)
T COG3829         238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSP-R----------------ANGPFI  300 (560)
T ss_pred             cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCc-c----------------cCCCeE
Confidence            455668999999888776666666532  234799999999999999999886521 1                123478


Q ss_pred             EEecccchhhHHHHH-HHHHHHHHHhccCcCC---------CCeEEEEEccchhhHHHHHHHHHHHhccC----------
Q 036742          429 ELNVNLQANAKYALM-GLVKEIRDNLAITPEV---------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------  488 (629)
Q Consensus       429 eInas~~~~~k~~l~-~~lrei~~~~~~~~~~---------~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------  488 (629)
                      .+||..-..  .+++ ++|.-....|..+...         .+.-||||||..|.-..|..|++++++-.          
T Consensus       301 aiNCaAiPe--~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~  378 (560)
T COG3829         301 AINCAAIPE--TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPI  378 (560)
T ss_pred             EEecccCCH--HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCce
Confidence            899842211  1233 2333333344433321         13399999999999999999999998532          


Q ss_pred             -CCcEEEEEecCCcc-------chHHHhhcceEeeccCCCH----HHHH----HHHHHHHHhcCC---CCCHHHHHHHHH
Q 036742          489 -DSCKLILCCEDDVD-------IIESVKTHCKVIKVDPPVT----HEIM----EVLIQIARKEDF---DLSMTFAAKIAT  549 (629)
Q Consensus       489 -~~~~~ILitN~~~~-------I~~aLrSR~~~I~F~ppt~----eei~----~iL~~i~~kegl---~is~e~L~~Ia~  549 (629)
                       .+++||.+||..-.       +-+.|--|+.++.+.-|+-    +++.    ..|.+...+.+-   .++++++..|.+
T Consensus       379 ~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~  458 (560)
T COG3829         379 PVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR  458 (560)
T ss_pred             eeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence             44678999987422       3455666776655443432    2222    223333333332   378999988877


Q ss_pred             H-ccCCHHHHHHHHHHHHh
Q 036742          550 K-AKQNLRKAIMALEACKA  567 (629)
Q Consensus       550 ~-s~GDiR~AInlLq~~~~  567 (629)
                      . ..|++|..-|+++.+..
T Consensus       459 y~WPGNVRELeNviER~v~  477 (560)
T COG3829         459 YDWPGNVRELENVIERAVN  477 (560)
T ss_pred             CCCCchHHHHHHHHHHHHh
Confidence            6 56999999999998664

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2.9e-07  Score=96.94  Aligned_cols=103  Identities=21%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             EEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eEee
Q 036742          463 MIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KVIK  515 (629)
Q Consensus       463 VIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~I~  515 (629)
                      ||||||||.+.            .++|.-|+.++|...          +++.||.+.    ..|++++|.|.-|+ ..++
T Consensus       253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVE  332 (444)
T COG1220         253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVE  332 (444)
T ss_pred             eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEE
Confidence            99999999992            256777888888543          222333332    34778999999999 5799


Q ss_pred             ccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHcc--------CCHHHHHHHHHHH
Q 036742          516 VDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKAK--------QNLRKAIMALEAC  565 (629)
Q Consensus       516 F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s~--------GDiR~AInlLq~~  565 (629)
                      +..++.+++..||..           .+.-+++  .+++++++.||+.+.        =-.|+.-..|+.+
T Consensus       333 L~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl  403 (444)
T COG1220         333 LDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL  403 (444)
T ss_pred             cccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence            999999998887743           2445665  458999998887642        1246666666543

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=98.68  E-value=4.1e-07  Score=100.10  Aligned_cols=195  Identities=16%  Similarity=0.183  Sum_probs=130.1

Q ss_pred             CCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+.+|||+-.+...+.+.+.  ...--.|||+|..||||-.+|++|-..- .-.                ...++.+||.
T Consensus       221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S-~R~----------------~kPfV~~NCA  283 (550)
T COG3604         221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS-PRR----------------DKPFVKLNCA  283 (550)
T ss_pred             ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC-ccc----------------CCCceeeecc
Confidence            56789999887777776664  2233379999999999999999998752 211                1237888884


Q ss_pred             cchhhHHHHH-HHHHHHHHHhccCcCC--------CCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742          434 LQANAKYALM-GLVKEIRDNLAITPEV--------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL  493 (629)
Q Consensus       434 ~~~~~k~~l~-~~lrei~~~~~~~~~~--------~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~  493 (629)
                      .-..  .+++ ++|.-....|..+...        .+.-||+|||..|.-..|..|++.+.+..           -+++|
T Consensus       284 AlPe--sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRi  361 (550)
T COG3604         284 ALPE--SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRV  361 (550)
T ss_pred             ccch--HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence            2211  0222 3333333333332211        23499999999999999999999997542           34578


Q ss_pred             EEEecCCc-------cchHHHhhcceEeeccCCCHHH-------HH-HHHHHHHHhcCC---CCCHHHHHHHHHH-ccCC
Q 036742          494 ILCCEDDV-------DIIESVKTHCKVIKVDPPVTHE-------IM-EVLIQIARKEDF---DLSMTFAAKIATK-AKQN  554 (629)
Q Consensus       494 ILitN~~~-------~I~~aLrSR~~~I~F~ppt~ee-------i~-~iL~~i~~kegl---~is~e~L~~Ia~~-s~GD  554 (629)
                      |.+||..-       ++-..|--|+-++.+.-|+-.|       +. ..+++++.+.|.   .++.++++.|... ..||
T Consensus       362 IAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGN  441 (550)
T COG3604         362 IAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGN  441 (550)
T ss_pred             EeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCc
Confidence            99998642       2456677777766654444322       22 334445555444   6789999998876 4699


Q ss_pred             HHHHHHHHHHHHhcC
Q 036742          555 LRKAIMALEACKALN  569 (629)
Q Consensus       555 iR~AInlLq~~~~~~  569 (629)
                      +|...|.++.+...+
T Consensus       442 VRELen~veRavlla  456 (550)
T COG3604         442 VRELENVVERAVLLA  456 (550)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877644

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.64  E-value=3.4e-07  Score=98.07  Aligned_cols=130  Identities=15%  Similarity=0.251  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          366 EAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       366 ~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      +++..+.++..  ....+++|+||+|+|||+||.+||+++...+.                 .|+++++.+..       
T Consensus       168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~-----------------~V~y~t~~~l~-------  223 (329)
T PRK06835        168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-----------------SVIYRTADELI-------  223 (329)
T ss_pred             HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC-----------------eEEEEEHHHHH-------
Confidence            44545556651  12268999999999999999999999854332                 26666653211       


Q ss_pred             HHHHHHH-HH---hc--cCcCCCCeEEEEEccchh--hHHHHHHHHHHHhc-cCCCcEEEEEecCCcc-----chHHHhh
Q 036742          444 GLVKEIR-DN---LA--ITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDG-YTDSCKLILCCEDDVD-----IIESVKT  509 (629)
Q Consensus       444 ~~lrei~-~~---~~--~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe-~~~~~~~ILitN~~~~-----I~~aLrS  509 (629)
                      ..++... ..   ..  ...-....+|||||+...  +...+..|..+++. +....++|++||....     +.+.+.+
T Consensus       224 ~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~S  303 (329)
T PRK06835        224 EILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISS  303 (329)
T ss_pred             HHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHH
Confidence            1111100 00   00  000112249999999665  56666777778774 3446789999997543     3456677


Q ss_pred             cc----eEeeccCC
Q 036742          510 HC----KVIKVDPP  519 (629)
Q Consensus       510 R~----~~I~F~pp  519 (629)
                      |+    .++.|...
T Consensus       304 RL~~~~~~i~~~G~  317 (329)
T PRK06835        304 RLLGNFTLLKFYGE  317 (329)
T ss_pred             HHHcCCEEEEecCc
Confidence            65    45666543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.63  E-value=2.2e-07  Score=84.70  Aligned_cols=102  Identities=19%  Similarity=0.320  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV  459 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~  459 (629)
                      ..++|+||+|+|||++++.+++.+.....            ......++.+++........+    ...+...+......
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~----~~~i~~~l~~~~~~   68 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAE------------IKNHPDVIYVNCPSSRTPRDF----AQEILEALGLPLKS   68 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHH------------HCCCEEEEEEEHHHHSSHHHH----HHHHHHHHT-SSSS
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhh------------ccCCCcEEEEEeCCCCCHHHH----HHHHHHHhCccccc
Confidence            36899999999999999999998742100            000123566666332222222    22222222211111


Q ss_pred             ------------------CCeEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          460 ------------------SNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       460 ------------------~~kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                                        ...+|||||+|.+ ..+..+.|+.+.+  ...+.||++++.
T Consensus        69 ~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   69 RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence                              1139999999999 8888888888877  677888888875

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.63  E-value=7.2e-07  Score=99.38  Aligned_cols=194  Identities=15%  Similarity=0.150  Sum_probs=121.8

Q ss_pred             CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      .+.+++|.......+...+..  .....++|.|++||||+++|+++.......                 ...++.++|.
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~i~i~c~  198 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-----------------KAPFIALNMA  198 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-----------------CCCeEeeeCC
Confidence            456788877666555555431  122369999999999999999988763211                 1236788885


Q ss_pred             cchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742          434 LQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL  493 (629)
Q Consensus       434 ~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~  493 (629)
                      .....  .+. .++......+..        .....+..|||||||.|....|..|+++++...           .++++
T Consensus       199 ~~~~~--~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri  276 (469)
T PRK10923        199 AIPKD--LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI  276 (469)
T ss_pred             CCCHH--HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence            33211  111 111111111110        011224589999999999999999999997532           24578


Q ss_pred             EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-ccCC
Q 036742          494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-AKQN  554 (629)
Q Consensus       494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s~GD  554 (629)
                      |++++..-       .+.+.|..|+.  .|.++|+-.  +++..    +|...+.+.+.   .++++++..|..+ ..||
T Consensus       277 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN  356 (469)
T PRK10923        277 IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN  356 (469)
T ss_pred             EEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCh
Confidence            88887542       35677888874  455666543  33333    33333444332   4789999988877 4699


Q ss_pred             HHHHHHHHHHHHhc
Q 036742          555 LRKAIMALEACKAL  568 (629)
Q Consensus       555 iR~AInlLq~~~~~  568 (629)
                      +|..-|.++.+...
T Consensus       357 v~eL~~~i~~~~~~  370 (469)
T PRK10923        357 VRQLENTCRWLTVM  370 (469)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>PRK06526 transposase; Provisional

Probab=98.63  E-value=9.2e-08  Score=98.90  Aligned_cols=106  Identities=14%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HH-HHHHHHHHH
Q 036742          372 ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KY-ALMGLVKEI  449 (629)
Q Consensus       372 ~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~-~l~~~lrei  449 (629)
                      +|+..  ..+++|+||||||||+||.+|+.++...+.                 .++.+.+...... .. .....+...
T Consensus        93 ~fi~~--~~nlll~Gp~GtGKThLa~al~~~a~~~g~-----------------~v~f~t~~~l~~~l~~~~~~~~~~~~  153 (254)
T PRK06526         93 DFVTG--KENVVFLGPPGTGKTHLAIGLGIRACQAGH-----------------RVLFATAAQWVARLAAAHHAGRLQAE  153 (254)
T ss_pred             chhhc--CceEEEEeCCCCchHHHHHHHHHHHHHCCC-----------------chhhhhHHHHHHHHHHHHhcCcHHHH
Confidence            45543  347999999999999999999998743321                 0222222110000 00 000000111


Q ss_pred             HHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          450 RDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       450 ~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ...+     ....||||||++.+  .....+.|..+++.-.....+|+++|.+.
T Consensus       154 l~~l-----~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~  202 (254)
T PRK06526        154 LVKL-----GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF  202 (254)
T ss_pred             HHHh-----ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence            1111     12349999999987  46666778888764333456899998753

>PRK15115 response regulator GlrR; Provisional

Probab=98.63  E-value=8.9e-07  Score=97.86  Aligned_cols=191  Identities=19%  Similarity=0.230  Sum_probs=113.6

Q ss_pred             cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      .++|.......+.+.+.  ...-..++|+|++|+||+++|+++.......                 ...++.++|....
T Consensus       135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-----------------~~~f~~i~c~~~~  197 (444)
T PRK15115        135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-----------------SKPFIAINCGALP  197 (444)
T ss_pred             cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-----------------CCCeEEEeCCCCC
Confidence            45665443333332222  1223469999999999999999998864211                 1236788875322


Q ss_pred             hhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742          437 NAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC  496 (629)
Q Consensus       437 ~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi  496 (629)
                      .  ..+... +......+..        .....+.+|||||||.|....|..|+++++...           .++++|++
T Consensus       198 ~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~  275 (444)
T PRK15115        198 E--QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA  275 (444)
T ss_pred             H--HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEe
Confidence            1  111111 1111111110        111234599999999999999999999997532           24678888


Q ss_pred             ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742          497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQNLRK  557 (629)
Q Consensus       497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GDiR~  557 (629)
                      ++..-       .+.+.|..|+..  |.++|+-.  +++..+    +...+.+.+   ..++++++..|.... .||+|.
T Consensus       276 ~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvre  355 (444)
T PRK15115        276 THRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ  355 (444)
T ss_pred             CCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHH
Confidence            77531       233455555543  44444432  233323    333333333   247999999999887 899999


Q ss_pred             HHHHHHHHHhc
Q 036742          558 AIMALEACKAL  568 (629)
Q Consensus       558 AInlLq~~~~~  568 (629)
                      ..+.++.+...
T Consensus       356 L~~~i~~~~~~  366 (444)
T PRK15115        356 LVNVIEQCVAL  366 (444)
T ss_pred             HHHHHHHHHHh
Confidence            99999986653

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=98.63  E-value=8.9e-07  Score=92.17  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             cccccHHHHHHHHHHH----HcCC--CCeEE-EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          359 GFICHRHEAQLLKELV----VDGN--CPHIL-IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L----~~g~--~p~IL-L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      -+.||.-+++.+-..+    ....  .|-+| |||++||||..+++.||+.++..+.              .|.+|..+-
T Consensus        83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~fv  148 (344)
T KOG2170|consen   83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL--------------RSPFVHHFV  148 (344)
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc--------------cchhHHHhh
Confidence            3566655555554444    4433  23344 9999999999999999999864432              122222221


Q ss_pred             cc----cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------CCcEEEEEecCC
Q 036742          432 VN----LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------DSCKLILCCEDD  500 (629)
Q Consensus       432 as----~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------~~~~~ILitN~~  500 (629)
                      +.    ....+...-.++-+.++.+..   .....++|+||+|.|.++..+.|...++.++       .+..||+.+|.-
T Consensus       149 at~hFP~~~~ie~Yk~eL~~~v~~~v~---~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g  225 (344)
T KOG2170|consen  149 ATLHFPHASKIEDYKEELKNRVRGTVQ---ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG  225 (344)
T ss_pred             hhccCCChHHHHHHHHHHHHHHHHHHH---hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence            21    112221111222233333322   2233599999999999999999999999654       445788888764


Q ss_pred             c
Q 036742          501 V  501 (629)
Q Consensus       501 ~  501 (629)
                      .
T Consensus       226 g  226 (344)
T KOG2170|consen  226 G  226 (344)
T ss_pred             c
Confidence            4

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.58  E-value=7e-08  Score=94.57  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-  457 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-  457 (629)
                      ..+++|+||+|||||+||.++++++...+.                 .+++++..          +++..+........ 
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-----------------~v~f~~~~----------~L~~~l~~~~~~~~~   99 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-----------------SVLFITAS----------DLLDELKQSRSDGSY   99 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT-------------------EEEEEHH----------HHHHHHHCCHCCTTH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-----------------ceeEeecC----------ceeccccccccccch
Confidence            348999999999999999999998854332                 14555442          11111111110000 


Q ss_pred             ------CCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          458 ------EVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       458 ------~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                            -....+|||||+...  +....+.|..+++.--.+.+.|+|||..
T Consensus       100 ~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~  150 (178)
T PF01695_consen  100 EELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS  150 (178)
T ss_dssp             CHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred             hhhcCccccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence                  001239999999765  4556666777776332345789999964

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PLN03210 Resistant to P

Probab=98.58  E-value=3.7e-06  Score=103.83  Aligned_cols=263  Identities=15%  Similarity=0.132  Sum_probs=137.0

Q ss_pred             chhhhhhhcCCCCCCCCCCccccCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHHc--CCCCeEE
Q 036742          306 DAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD--GNCPHIL  383 (629)
Q Consensus       306 ~~~~~~~~~~~~~~~~~s~~~~~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~--g~~p~IL  383 (629)
                      ..|-..++......|-..  ....+|.+++++. +. .....+ ..-.+..+++++|.+..++.|..++..  .....+-
T Consensus       137 ~~w~~al~~~~~~~g~~~--~~~~~E~~~i~~I-v~-~v~~~l-~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvg  211 (1153)
T PLN03210        137 IQWKQALTDVANILGYHS--QNWPNEAKMIEEI-AN-DVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVG  211 (1153)
T ss_pred             HHHHHHHHHHhCcCceec--CCCCCHHHHHHHH-HH-HHHHhh-ccccCcccccccchHHHHHHHHHHHccccCceEEEE
Confidence            467666654433333211  2234677777753 11 111111 122345689999999999999998853  2344577


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc-ccccCCcceEE-EecccchhhHHHHHHHHHHHHHHhccC-----
Q 036742          384 IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL-VPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAIT-----  456 (629)
Q Consensus       384 L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~-~~i~sS~~vle-Inas~~~~~k~~l~~~lrei~~~~~~~-----  456 (629)
                      |+||+|+||||+|++++..+..... . .  ..+. ..+........ .+.........+....+.++.......     
T Consensus       212 I~G~gGiGKTTLA~~l~~~l~~~F~-g-~--vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~  287 (1153)
T PLN03210        212 IWGSSGIGKTTIARALFSRLSRQFQ-S-S--VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG  287 (1153)
T ss_pred             EEcCCCCchHHHHHHHHHHHhhcCC-e-E--EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH
Confidence            9999999999999999988643210 0 0  0000 00000000000 000000000001112222222111100     


Q ss_pred             -----cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHH
Q 036742          457 -----PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI  531 (629)
Q Consensus       457 -----~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i  531 (629)
                           -..++.+||||+++..  ...+.|....+.+..+.+||+||.+...+...  .-..++.+..++.++..+++...
T Consensus       288 ~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~--~~~~~~~v~~l~~~ea~~LF~~~  363 (1153)
T PLN03210        288 AMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAH--GIDHIYEVCLPSNELALEMFCRS  363 (1153)
T ss_pred             HHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc--CCCeEEEecCCCHHHHHHHHHHH
Confidence                 0122349999999864  34555555555555678899998865433211  01246888889999999999888


Q ss_pred             HHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          532 ARKEDFDLS--MTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       532 ~~kegl~is--~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      +.+....-+  .+....|++.|+|-+ -|+..+-..- .+      . ....|+.++..+.
T Consensus       364 Af~~~~~~~~~~~l~~~iv~~c~GLP-LAl~vlgs~L-~~------k-~~~~W~~~l~~L~  415 (1153)
T PLN03210        364 AFKKNSPPDGFMELASEVALRAGNLP-LGLNVLGSYL-RG------R-DKEDWMDMLPRLR  415 (1153)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHhCCCc-HHHHHHHHHH-cC------C-CHHHHHHHHHHHH
Confidence            765433211  134566788888844 4555543322 11      1 1256777766554

syringae 6; Provisional

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.58  E-value=1.6e-06  Score=96.19  Aligned_cols=194  Identities=13%  Similarity=0.117  Sum_probs=122.0

Q ss_pred             CcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          358 NGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      ..++|.......+...+.  .+..-.+++.|.+||||+++|+++.......                 ...++.++|...
T Consensus       134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-----------------~~~~~~~~c~~~  196 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-----------------NGPFIALNMAAI  196 (463)
T ss_pred             cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-----------------CCCeEEEeCCCC
Confidence            457776554444444432  1223368999999999999999998763211                 123677777533


Q ss_pred             hhhHHHHHHHH-HHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742          436 ANAKYALMGLV-KEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL  495 (629)
Q Consensus       436 ~~~k~~l~~~l-rei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL  495 (629)
                      ..  ..+...+ ......|..        .....+..|||||||.|....|..|+++++...           .++++|+
T Consensus       197 ~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~  274 (463)
T TIGR01818       197 PK--DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA  274 (463)
T ss_pred             CH--HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence            21  1111111 110001110        011224589999999999999999999997532           2457888


Q ss_pred             EecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742          496 CCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED---FDLSMTFAAKIATKA-KQNLR  556 (629)
Q Consensus       496 itN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg---l~is~e~L~~Ia~~s-~GDiR  556 (629)
                      +++..-       .+.+.|..|+.  .|.++|+.  .+++..++..    .+...+   ..++++++..|.... .||+|
T Consensus       275 ~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr  354 (463)
T TIGR01818       275 ATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVR  354 (463)
T ss_pred             eCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHH
Confidence            887542       34567777764  57777776  4555544433    344333   467899999988775 69999


Q ss_pred             HHHHHHHHHHhcCC
Q 036742          557 KAIMALEACKALNY  570 (629)
Q Consensus       557 ~AInlLq~~~~~~~  570 (629)
                      ..-+.++.+...+.
T Consensus       355 eL~~~~~~~~~~~~  368 (463)
T TIGR01818       355 QLENLCRWLTVMAS  368 (463)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999998776543

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>TIGR01128 holA DNA polymerase III, delta subunit

Probab=98.58  E-value=6.2e-06  Score=86.19  Aligned_cols=160  Identities=13%  Similarity=0.145  Sum_probs=114.1

Q ss_pred             CCeEEEEEccchhh-HHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHh--hcceEeeccCCCHHHHHHHHHHHHH
Q 036742          460 SNAMIVIYEVDKAA-EHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVK--THCKVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       460 ~~kVIIIDEID~Ls-~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLr--SR~~~I~F~ppt~eei~~iL~~i~~  533 (629)
                      ..+||+|++++.+. ....+.|..+++.++..+.+|++++..+.   +...+.  ++|.++.|.+++..++..++...+.
T Consensus        46 ~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~  125 (302)
T TIGR01128        46 ERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLK  125 (302)
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHH
Confidence            45699999999985 35678899999988888888888875443   222333  4999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChHHHHHH
Q 036742          534 KEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPKRLVMV  605 (629)
Q Consensus       534 kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~~L~~i  605 (629)
                      +.|+.+++++++.|+..++||++.+.+.|+.++.....   +..+..++++++        .+++..++.+.....+   
T Consensus       126 ~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~---~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~---  199 (302)
T TIGR01128       126 KLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPD---GKITLEDVEEAVSDSARFNVFDLTDALLEGKAARAL---  199 (302)
T ss_pred             HcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCC---CCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHH---
Confidence            99999999999999999999999999999987764221   112223444333        3445544444332222   


Q ss_pred             HHHHHHHHHcCCCHHHHHHHH
Q 036742          606 RGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       606 r~kly~lL~~~i~~~~i~~~L  626 (629)
                       ..+..++..+.+|-.|+..|
T Consensus       200 -~~l~~l~~~~~~~~~il~~l  219 (302)
T TIGR01128       200 -RILKGLLGEGEEPLILLALL  219 (302)
T ss_pred             -HHHHHHHHCCCcHHHHHHHH
Confidence             23444555555555554444

subunit around DNA forming a DNA sliding clamp.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.55  E-value=6.6e-07  Score=94.97  Aligned_cols=129  Identities=14%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             hccCCCCCCccccc----HHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          350 DKHQPSSLNGFICH----RHEAQLLKELVVDG----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       350 eKyrP~tfddIiG~----e~~~~~Lk~~L~~g----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+...+|+++...    ..+......|+...    ...+++|+||+|||||+||.|+|+++...+.             
T Consensus       119 ~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-------------  185 (306)
T PRK08939        119 KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-------------  185 (306)
T ss_pred             HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence            34445678877643    23445556666532    3458999999999999999999999853221             


Q ss_pred             cCCcceEEEecccc-hhhHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchh--hHHHH-HHHHHHHh-ccCCCcEEEE
Q 036742          422 ASSAHHVELNVNLQ-ANAKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKA--AEHIQ-YLIKWIMD-GYTDSCKLIL  495 (629)
Q Consensus       422 ~sS~~vleInas~~-~~~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~L--s~~~q-~aLlrilE-e~~~~~~~IL  495 (629)
                          .+..+..... ...+... ...+.+....+.     ...||||||+...  +.... ..|..+++ .+....+.|+
T Consensus       186 ----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~-----~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~  256 (306)
T PRK08939        186 ----SSTLLHFPEFIRELKNSISDGSVKEKIDAVK-----EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFF  256 (306)
T ss_pred             ----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc-----CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEE
Confidence                1333333210 0000000 000111111111     2249999999765  44443 34444555 3346788999


Q ss_pred             EecCC
Q 036742          496 CCEDD  500 (629)
Q Consensus       496 itN~~  500 (629)
                      |+|..
T Consensus       257 TSNl~  261 (306)
T PRK08939        257 TSNFD  261 (306)
T ss_pred             ECCCC
Confidence            99954

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.55  E-value=2.9e-06  Score=93.95  Aligned_cols=192  Identities=14%  Similarity=0.181  Sum_probs=115.5

Q ss_pred             CcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          358 NGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      .+++|.......+.+.+..  .....++++|++||||+++|+++.......                 ...++.++|...
T Consensus       143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~~~i~c~~~  205 (457)
T PRK11361        143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-----------------KGPFIKVNCAAL  205 (457)
T ss_pred             cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-----------------CCCeEEEECCCC
Confidence            4567765544444444321  122369999999999999999997753211                 123677777532


Q ss_pred             hhhHHHHHH-HHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742          436 ANAKYALMG-LVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL  495 (629)
Q Consensus       436 ~~~k~~l~~-~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL  495 (629)
                      ..  ..+.. ++......+.        ......+.+|||||||.|....|..|+.+++...           .++++|+
T Consensus       206 ~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~  283 (457)
T PRK11361        206 PE--SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIA  283 (457)
T ss_pred             CH--HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEE
Confidence            21  11111 1111000110        0111234599999999999999999999987422           2468888


Q ss_pred             EecCCc-------cchHHHhhcceE--eeccCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742          496 CCEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIME----VLIQIARKED---FDLSMTFAAKIATKA-KQNLR  556 (629)
Q Consensus       496 itN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~----iL~~i~~keg---l~is~e~L~~Ia~~s-~GDiR  556 (629)
                      +++..-       .+.+.+..|+..  |.++|+-.  +++..    +|.+.+.+.+   ..++++++..|.... .||+|
T Consensus       284 ~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~  363 (457)
T PRK11361        284 ATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIR  363 (457)
T ss_pred             eCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHH
Confidence            887542       245556666644  44555442  23332    3333343322   357899999988775 79999


Q ss_pred             HHHHHHHHHHhc
Q 036742          557 KAIMALEACKAL  568 (629)
Q Consensus       557 ~AInlLq~~~~~  568 (629)
                      ..-+.++.+...
T Consensus       364 eL~~~~~~~~~~  375 (457)
T PRK11361        364 ELSNVIERAVVM  375 (457)
T ss_pred             HHHHHHHHHHHh
Confidence            999999976653

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=5.2e-07  Score=106.14  Aligned_cols=123  Identities=15%  Similarity=0.238  Sum_probs=83.2

Q ss_pred             CcccccHHHHHHHHHHHHcC-----C---CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          358 NGFICHRHEAQLLKELVVDG-----N---CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g-----~---~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      +.|+||++++..+.+++..-     +   .--+||.||.|+|||-||+++|..+++...                 .++.
T Consensus       562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~-----------------~~Ir  624 (898)
T KOG1051|consen  562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE-----------------NFIR  624 (898)
T ss_pred             hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc-----------------ceEE
Confidence            45899999999999999621     1   124899999999999999999999977642                 1445


Q ss_pred             EecccchhhH--------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CC
Q 036742          430 LNVNLQANAK--------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DS  490 (629)
Q Consensus       430 Inas~~~~~k--------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~  490 (629)
                      |+.+....+.        +.-.+....+.+....   .-+.||+|||||......++.|+.+++...           .+
T Consensus       625 iDmse~~evskligsp~gyvG~e~gg~Lteavrr---rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN  701 (898)
T KOG1051|consen  625 LDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR---RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN  701 (898)
T ss_pred             echhhhhhhhhccCCCcccccchhHHHHHHHHhc---CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence            5443210000        0001111122222111   123599999999999999999999998654           66


Q ss_pred             cEEEEEecCC
Q 036742          491 CKLILCCEDD  500 (629)
Q Consensus       491 ~~~ILitN~~  500 (629)
                      +.||||+|.-
T Consensus       702 ~I~IMTsn~~  711 (898)
T KOG1051|consen  702 AIFIMTSNVG  711 (898)
T ss_pred             eEEEEecccc
Confidence            7899998763

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.47  E-value=9e-07  Score=104.37  Aligned_cols=158  Identities=13%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             CcccccHHHHHHHHHHHHcCC------------------C---CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          358 NGFICHRHEAQLLKELVVDGN------------------C---PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~------------------~---p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      -.|.|++.++..|.-.|-.|.                  .   .||||.|+|||||+.+|+++++......+        
T Consensus       450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y--------  521 (915)
T PTZ00111        450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY--------  521 (915)
T ss_pred             CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc--------
Confidence            368899998887765554332                  1   18999999999999999999985211100        


Q ss_pred             ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC--------
Q 036742          417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------  488 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------  488 (629)
                          ..+. ....+++.......   ...-.+............+.+++|||+|.|....+.+|+..||...        
T Consensus       522 ----tsG~-~~s~vgLTa~~~~~---d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi  593 (915)
T PTZ00111        522 ----TSGK-SSSSVGLTASIKFN---ESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI  593 (915)
T ss_pred             ----CCCC-CCccccccchhhhc---ccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence                0000 01111110000000   0000000000000111234599999999999999999999998542        


Q ss_pred             -----CCcEEEEEecCCc-------------cchHHHhhcc-eE-eeccCCCHHHHHHHHHHH
Q 036742          489 -----DSCKLILCCEDDV-------------DIIESVKTHC-KV-IKVDPPVTHEIMEVLIQI  531 (629)
Q Consensus       489 -----~~~~~ILitN~~~-------------~I~~aLrSR~-~~-I~F~ppt~eei~~iL~~i  531 (629)
                           ..+.||.+||...             .+.++|.+|| ++ +.+..++.+.=..+...+
T Consensus       594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI  656 (915)
T PTZ00111        594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI  656 (915)
T ss_pred             ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence                 4567888888631             2679999999 43 445666654433333333

>PRK07452 DNA polymerase III subunit delta; Validated

Probab=98.47  E-value=4e-05  Score=81.56  Aligned_cols=220  Identities=11%  Similarity=0.077  Sum_probs=138.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-  458 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-  458 (629)
                      |.+||||+----....+..+...+..... .             .-.+.+++..+..        .+.++.......+- 
T Consensus         2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~-~-------------~fn~~~~d~~~~~--------~~~~~~~~~~t~pff   59 (326)
T PRK07452          2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW-K-------------SFNYSRLDGDDAD--------QAIQALNEAMTPPFG   59 (326)
T ss_pred             CEEEEEcChHHHHHHHHHHHHHHhCCchh-h-------------hcchhhcCCccch--------HHHHHHHHhcCCCCC
Confidence            57899999888887777777766532211 0             0012233322111        12233332222222 


Q ss_pred             CCCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecC-Cc---cchHHHhhcceEeeccCC---CHHHHHHHH
Q 036742          459 VSNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCED-DV---DIIESVKTHCKVIKVDPP---VTHEIMEVL  528 (629)
Q Consensus       459 ~~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~-~~---~I~~aLrSR~~~I~F~pp---t~eei~~iL  528 (629)
                      ...++|+|++++.+   .....+.|..+++.+++.+.+|+++.. .+   ++...+...+.+..|.++   +.+++..++
T Consensus        60 ~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i  139 (326)
T PRK07452         60 SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLV  139 (326)
T ss_pred             CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHH
Confidence            34579999998655   566778899999988888888876533 22   245567777778887655   457799999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH-------HHHHHHHHhcCCChHH
Q 036742          529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV-------LIELAAEILADPSPKR  601 (629)
Q Consensus       529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~-------l~ei~~~il~~~s~~~  601 (629)
                      ...+.+.|+.++++++..|++.+++|++.+.+.|+.+++.... .....+..+++.+       +.+++..++.+.... 
T Consensus       140 ~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~-~~~~It~~~V~~~v~~~~~~if~l~dai~~~~~~~-  217 (326)
T PRK07452        140 ERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAEN-STKPISAEEVKALVSNTTQNSLQLADALLQGNTGK-  217 (326)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccC-CCCccCHHHHHHHhccCcCcHHHHHHHHHCCCHHH-
Confidence            9999999999999999999999999999999999988764110 0111222333333       344555554443322 


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          602 LVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       602 L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                         ....+..++..+.+|-.|+--|
T Consensus       218 ---A~~~l~~L~~~g~~p~~il~~l  239 (326)
T PRK07452        218 ---ALALLDDLLDANEPALRIVATL  239 (326)
T ss_pred             ---HHHHHHHHHHCCCcHHHHHHHH
Confidence               2234556667777776665444

>PRK05574 holA DNA polymerase III subunit delta; Reviewed

Probab=98.47  E-value=8.4e-05  Score=79.09  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             CCeEEEEEccchhhHH-HHHHHHHHHh--ccCCC--cEEEEEecCCcc---c---hHHHhhcceEeeccCCCHHHHHHHH
Q 036742          460 SNAMIVIYEVDKAAEH-IQYLIKWIMD--GYTDS--CKLILCCEDDVD---I---IESVKTHCKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~-~q~aLlrilE--e~~~~--~~~ILitN~~~~---I---~~aLrSR~~~I~F~ppt~eei~~iL  528 (629)
                      ..+||+|++++.+... ....+..+.+  .+...  ..+|+..+..+.   +   ..++..++.++.|.+++..++..++
T Consensus        76 ~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i  155 (340)
T PRK05574         76 DRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWI  155 (340)
T ss_pred             cCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHH
Confidence            4569999999998554 2233333333  22322  333444443322   3   5678888999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChH
Q 036742          529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPK  600 (629)
Q Consensus       529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~  600 (629)
                      ...+.+.|+.+++++++.|++.++||++.+.+.|+.++.....   +..+..++++++        +++...++.+....
T Consensus       156 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~---~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~  232 (340)
T PRK05574        156 QQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPD---GKITLEDVEEAVPDSARFDVFDLVDAILAGKIKR  232 (340)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999999999999987764311   112333333332        34444444443222


Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          601 RLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       601 ~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                          ....+..++..+.+|-.|+-.|.
T Consensus       233 ----a~~~l~~l~~~~~~~~~il~~l~  255 (340)
T PRK05574        233 ----ALRILDGLRLEGEEPIKLLAALQ  255 (340)
T ss_pred             ----HHHHHHHHHHCCCcHHHHHHHHH
Confidence                22334455556666655554443

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5e-06  Score=95.26  Aligned_cols=171  Identities=14%  Similarity=0.161  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          361 ICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      -+.+..+..+..++....         .+.+||+|+||||||++++++|.++ |..                   +++++
T Consensus       404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-g~h-------------------~~evd  463 (953)
T KOG0736|consen  404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-GLH-------------------LLEVD  463 (953)
T ss_pred             ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-CCc-------------------eEecc
Confidence            345555555666664222         3468999999999999999999997 654                   56776


Q ss_pred             cccch-hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHh--ccC---CCcEEEEEe
Q 036742          432 VNLQA-NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMD--GYT---DSCKLILCC  497 (629)
Q Consensus       432 as~~~-~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilE--e~~---~~~~~ILit  497 (629)
                      |..-- ......+-.+   ...|.......+.||||-.+|.+..        ..+..++..+.  .+.   ....||.+|
T Consensus       464 c~el~~~s~~~~etkl---~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~  540 (953)
T KOG0736|consen  464 CYELVAESASHTETKL---QAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT  540 (953)
T ss_pred             HHHHhhcccchhHHHH---HHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence            63110 0000001111   1223333334567999998887721        23344444443  222   334577788


Q ss_pred             cCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccCCHH
Q 036742          498 EDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQNLR  556 (629)
Q Consensus       498 N~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~GDiR  556 (629)
                      +..+.+.+.|++-+. .|.++.++.+|..++|+-.+....  ++.+ .++.++..+.|-.+
T Consensus       541 ~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~  599 (953)
T KOG0736|consen  541 SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSF  599 (953)
T ss_pred             cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCH
Confidence            888999999999874 699999999999999998877654  4433 46678887776443

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.45  E-value=3e-06  Score=95.43  Aligned_cols=158  Identities=11%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc----CC---cce
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA----SS---AHH  427 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~----sS---~~v  427 (629)
                      .+|.++.|+..+++.+.-.+..|  .+++|.||+|||||++++.++..+.......     .+++...    +.   ..-
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g~e-----~le~~~i~s~~g~~~~~~~  260 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSNEE-----ALESAAILSLVNAESVQKQ  260 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCCcE-----EEecchhhhhhccccccCC
Confidence            37888899998887776555544  4899999999999999999998753221100     0000000    00   000


Q ss_pred             EEEecc--cchhhHHHHHHHHHHHH-HHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-------------CCCc
Q 036742          428 VELNVN--LQANAKYALMGLVKEIR-DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-------------TDSC  491 (629)
Q Consensus       428 leInas--~~~~~k~~l~~~lrei~-~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-------------~~~~  491 (629)
                      +...+.  -.....  ...++..-. -.-.......+.+|||||++.+....++.|+..||..             +..+
T Consensus       261 ~~~rPfr~ph~~~s--~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f  338 (506)
T PRK09862        261 WRQRPFRSPHHSAS--LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARF  338 (506)
T ss_pred             cCCCCccCCCccch--HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCE
Confidence            000000  000000  001111000 0000001122459999999999999999999998743             2456


Q ss_pred             EEEEEecCCc---------------------cchHHHhhcce-EeeccCCCH
Q 036742          492 KLILCCEDDV---------------------DIIESVKTHCK-VIKVDPPVT  521 (629)
Q Consensus       492 ~~ILitN~~~---------------------~I~~aLrSR~~-~I~F~ppt~  521 (629)
                      .+|.++|...                     .|..++.+||- .+.+++++.
T Consensus       339 ~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~  390 (506)
T PRK09862        339 QLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP  390 (506)
T ss_pred             EEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence            7888888642                     36678999984 467776643

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.45  E-value=1.1e-06  Score=82.14  Aligned_cols=106  Identities=19%  Similarity=0.298  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV  459 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~  459 (629)
                      ..|+|+|++||||+++|++|.... +...                ..++.+++....      .+.+..          .
T Consensus        22 ~pvli~GE~GtGK~~~A~~lh~~~-~~~~----------------~~~~~~~~~~~~------~~~l~~----------a   68 (138)
T PF14532_consen   22 SPVLITGEPGTGKSLLARALHRYS-GRAN----------------GPFIVIDCASLP------AELLEQ----------A   68 (138)
T ss_dssp             S-EEEECCTTSSHHHHHHCCHHTT-TTCC----------------S-CCCCCHHCTC------HHHHHH----------C
T ss_pred             CcEEEEcCCCCCHHHHHHHHHhhc-CccC----------------CCeEEechhhCc------HHHHHH----------c
Confidence            369999999999999999998863 2211                012222332111      112222          1


Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCc-c------chHHHhhcc--eEeeccC
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDV-D------IIESVKTHC--KVIKVDP  518 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~-~------I~~aLrSR~--~~I~F~p  518 (629)
                      .+..|||+|+|.|..+.|..|...++.. ..++++|++|...- .      +.+.|..++  ..|.+++
T Consensus        69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp  137 (138)
T PF14532_consen   69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP  137 (138)
T ss_dssp             TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred             CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence            4468999999999999999999999854 57789999887543 2      455666665  3454443

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=5.9e-07  Score=98.72  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=42.1

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|.||+||+.+++.|.-....|.  |+||+||||||||.+|..+..-|
T Consensus       176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL  222 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL  222 (490)
T ss_pred             cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC
Confidence            478999999999999998888766  79999999999999999887754

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.41  E-value=1.4e-05  Score=86.85  Aligned_cols=197  Identities=15%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC----C--CC---CCCCcccccccc-----
Q 036742          357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA----C--WN---EKWPTQVLVPVA-----  422 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~----~--~~---~~~~~~v~~~i~-----  422 (629)
                      |.-++|++..+..|.--...-.+.++||-|+.|+||||++++|+..|-...    |  ..   .....|..|.-.     
T Consensus        16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~   95 (423)
T COG1239          16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELE   95 (423)
T ss_pred             hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccc
Confidence            577899999777665554455567899999999999999999999863111    0  00   000011111111     


Q ss_pred             ---CCcceEEE-ec----ccchhh-HHHHHHHHHHHHHHh--ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---
Q 036742          423 ---SSAHHVEL-NV----NLQANA-KYALMGLVKEIRDNL--AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---  488 (629)
Q Consensus       423 ---sS~~vleI-na----s~~~~~-k~~l~~~lrei~~~~--~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---  488 (629)
                         .....+++ +.    ..++-+ .--++..+++-.+.|  .+.......||+|||+..|....+++|+..+++.-   
T Consensus        96 ~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~v  175 (423)
T COG1239          96 WLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDV  175 (423)
T ss_pred             cccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCcee
Confidence               00001111 11    011000 000112222211111  12222334599999999999999999999988631   


Q ss_pred             ----------CCcEEEEEecCCc-cchHHHhhcc-eEeecc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742          489 ----------DSCKLILCCEDDV-DIIESVKTHC-KVIKVD-PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL  555 (629)
Q Consensus       489 ----------~~~~~ILitN~~~-~I~~aLrSR~-~~I~F~-ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi  555 (629)
                                ..+.+|.+.|.-. .|-+.|+.|| ..+... +.+.++.++++.+.+..+  ..++.+++.++.. ...+
T Consensus       176 ereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~--~~Pe~f~~~~~~~-~~~l  252 (423)
T COG1239         176 EREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE--AVPEAFLEKYADA-QRAL  252 (423)
T ss_pred             eeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHHH-HHHH
Confidence                      2223444555433 4899999997 456654 455677778888877663  3345455544433 3345


Q ss_pred             H
Q 036742          556 R  556 (629)
Q Consensus       556 R  556 (629)
                      |
T Consensus       253 R  253 (423)
T COG1239         253 R  253 (423)
T ss_pred             H
Confidence            5

>PF05729 NACHT: NACHT domain

Probab=98.40  E-value=2.3e-06  Score=80.36  Aligned_cols=141  Identities=13%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch------hhHHHHHHHHHHHHHHh-
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA------NAKYALMGLVKEIRDNL-  453 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~------~~k~~l~~~lrei~~~~-  453 (629)
                      -++|+|+||+|||++++.++..+........           ....++.+......      .....+...+....... 
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~   70 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPS-----------KFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE   70 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccc-----------cceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH
Confidence            4789999999999999999988754332110           00112333331110      11111111111110000 


Q ss_pred             ----ccCcCCCCeEEEEEccchhhHHH--------HHHHHHHHhc-cCCCcEEEEEecCCccc-hHHHhhcceEeeccCC
Q 036742          454 ----AITPEVSNAMIVIYEVDKAAEHI--------QYLIKWIMDG-YTDSCKLILCCEDDVDI-IESVKTHCKVIKVDPP  519 (629)
Q Consensus       454 ----~~~~~~~~kVIIIDEID~Ls~~~--------q~aLlrilEe-~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~pp  519 (629)
                          .........+||||-+|.+....        ...|..++.. ...++.+|++|.....- ..........+.+.++
T Consensus        71 ~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~  150 (166)
T PF05729_consen   71 ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF  150 (166)
T ss_pred             HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence                00112233499999999996532        2345555654 45678888888754331 2222222367899999


Q ss_pred             CHHHHHHHHHHHH
Q 036742          520 VTHEIMEVLIQIA  532 (629)
Q Consensus       520 t~eei~~iL~~i~  532 (629)
                      +.+++.+++....
T Consensus       151 ~~~~~~~~~~~~f  163 (166)
T PF05729_consen  151 SEEDIKQYLRKYF  163 (166)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999987654

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.40  E-value=1.2e-06  Score=91.46  Aligned_cols=141  Identities=17%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE  448 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre  448 (629)
                      .|.-++..+.  ++||+||+|||||++++.+...+....+                 .+..++.+.....     ..+..
T Consensus        25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~~~-----------------~~~~~~~s~~Tts-----~~~q~   80 (272)
T PF12775_consen   25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSDKY-----------------LVITINFSAQTTS-----NQLQK   80 (272)
T ss_dssp             HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTCCE-----------------EEEEEES-TTHHH-----HHHHH
T ss_pred             HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcccc-----------------ceeEeeccCCCCH-----HHHHH
Confidence            4555556543  7999999999999999987766533221                 0233444322221     11222


Q ss_pred             HHHHhccC--------cCCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc-
Q 036742          449 IRDNLAIT--------PEVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV-  501 (629)
Q Consensus       449 i~~~~~~~--------~~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~-  501 (629)
                      +++.....        ..++..|+||||+..-..      ...+.|+.+++..   .         .++.+|.+++... 
T Consensus        81 ~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G  160 (272)
T PF12775_consen   81 IIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG  160 (272)
T ss_dssp             CCCTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT
T ss_pred             HHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC
Confidence            22111110        112233999999987743      3568888888732   1         3445677776532 


Q ss_pred             --cchHHHhhcceEeeccCCCHHHHHHHHHHHHH
Q 036742          502 --DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       502 --~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~  533 (629)
                        .+.+.+.+.+.++.+..|+.+.+..|...++.
T Consensus       161 r~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~  194 (272)
T PF12775_consen  161 RNPISPRFLRHFNILNIPYPSDESLNTIFSSILQ  194 (272)
T ss_dssp             --SHHHHHHTTEEEEE----TCCHHHHHHHHHHH
T ss_pred             CCCCChHHhhheEEEEecCCChHHHHHHHHHHHh
Confidence              37889999999999999999999888877765

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=5.5e-06  Score=89.85  Aligned_cols=124  Identities=15%  Similarity=0.272  Sum_probs=72.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEV  459 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~  459 (629)
                      +|||.||.|+|||.||+.||+.+.-+....+.      -.+.+.+||       +.    -++.++..+...+... ...
T Consensus       228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDc------TtLTQAGYV-------Ge----DVEsvi~KLl~~A~~nVekA  290 (564)
T KOG0745|consen  228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDC------TTLTQAGYV-------GE----DVESVIQKLLQEAEYNVEKA  290 (564)
T ss_pred             cEEEECCCCCchhHHHHHHHHHhCCCeEEecc------cchhhcccc-------cc----cHHHHHHHHHHHccCCHHHH
Confidence            79999999999999999999988544210000      001112222       11    1223333333332221 112


Q ss_pred             CCeEEEEEccchhh--------------HHHHHHHHHHHhccC-------------------CCcEEEEEecC-CccchH
Q 036742          460 SNAMIVIYEVDKAA--------------EHIQYLIKWIMDGYT-------------------DSCKLILCCED-DVDIIE  505 (629)
Q Consensus       460 ~~kVIIIDEID~Ls--------------~~~q~aLlrilEe~~-------------------~~~~~ILitN~-~~~I~~  505 (629)
                      +..|+||||+|.+.              +++|.+|++++|..-                   +...|+++|.. ...|+.
T Consensus       291 QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk  370 (564)
T KOG0745|consen  291 QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDK  370 (564)
T ss_pred             hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHH
Confidence            34599999999994              478999999998421                   11224555543 345777


Q ss_pred             HHhhcce--EeeccCCCH
Q 036742          506 SVKTHCK--VIKVDPPVT  521 (629)
Q Consensus       506 aLrSR~~--~I~F~ppt~  521 (629)
                      .|-+|..  .+-|..++.
T Consensus       371 ~I~rR~~d~slGFg~~s~  388 (564)
T KOG0745|consen  371 IISRRLDDKSLGFGAPSS  388 (564)
T ss_pred             HHHHhhcchhcccCCCCC
Confidence            7777764  466666643

>PRK06585 holA DNA polymerase III subunit delta; Reviewed

Probab=98.38  E-value=0.00016  Score=77.61  Aligned_cols=228  Identities=13%  Similarity=0.070  Sum_probs=142.6

Q ss_pred             HHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742          370 LKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK  447 (629)
Q Consensus       370 Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr  447 (629)
                      +...+.  .+..|.+||||+-.......+..+.+.+..... .             ...+..+...+...       ...
T Consensus         9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~-~-------------~fn~~~~~~~e~~~-------~~~   67 (343)
T PRK06585          9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLD-D-------------PFAVVRLDGDDLDA-------DPA   67 (343)
T ss_pred             HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCC-C-------------CcceeeccHHHhhc-------CHH
Confidence            344444  335678999999998888888888877532210 0             00122332211110       022


Q ss_pred             HHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHh--hcceEeeccCCCH
Q 036742          448 EIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVK--THCKVIKVDPPVT  521 (629)
Q Consensus       448 ei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLr--SR~~~I~F~ppt~  521 (629)
                      ++...+...+-+ ..++|++.+.+.   .....|..+++.+...+.+|+.+.....   +...+.  .....+.|.+++.
T Consensus        68 ~~~~~~~t~slF~~~rlViv~~~~~---~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~  144 (343)
T PRK06585         68 RLEDEANAISLFGGRRLIWVRAGSK---NLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDE  144 (343)
T ss_pred             HHHHHHhCCCCCCCceEEEEECCch---hHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCH
Confidence            333333333222 346999996653   3345677777777777777776544322   223232  2345788889999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHH
Q 036742          522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEI  593 (629)
Q Consensus       522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~i  593 (629)
                      .++..++...+.+.|+.++++++..|++.++||++.+.+.|+.+.+....  .+..+..+++.+        +++++..+
T Consensus       145 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~--~~~It~edV~~lv~~~~e~~if~l~dai  222 (343)
T PRK06585        145 RDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHG--KGEITLDDVRAVVGDASALSLDDAADAA  222 (343)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHhCCcccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999988775321  122233444333        35666666


Q ss_pred             hcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          594 LADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       594 l~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      +.++....+    ..+..++..+.+|-.|+-.|+
T Consensus       223 ~~~~~~~a~----~~l~~ll~~g~~p~~il~~L~  252 (343)
T PRK06585        223 LAGDLAAFE----RALDRALAEGTAPVLILRAAL  252 (343)
T ss_pred             HCCCHHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence            666543333    335566777777777766554

>PRK09183 transposase/IS protein; Provisional

Probab=98.38  E-value=1.3e-06  Score=90.52  Aligned_cols=113  Identities=19%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             HHHHHHHH--HHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch-hhHHH
Q 036742          365 HEAQLLKE--LVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA-NAKYA  441 (629)
Q Consensus       365 ~~~~~Lk~--~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~-~~k~~  441 (629)
                      ..+..|..  |+..+  .+++|+||+|||||+||.+|+..+...+.                 .+.++++.... .....
T Consensus        88 ~~i~~L~~~~~i~~~--~~v~l~Gp~GtGKThLa~al~~~a~~~G~-----------------~v~~~~~~~l~~~l~~a  148 (259)
T PRK09183         88 KQLQSLRSLSFIERN--ENIVLLGPSGVGKTHLAIALGYEAVRAGI-----------------KVRFTTAADLLLQLSTA  148 (259)
T ss_pred             HHHHHHhcCCchhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEEeHHHHHHHHHHH
Confidence            34444432  34443  37999999999999999999887532221                 14454432111 00000


Q ss_pred             -HHHHHHHHHHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          442 -LMGLVKEIRDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       442 -l~~~lrei~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                       ....+.......    .....++||||++.+  .....+.|..+++..-....+|+|+|.+
T Consensus       149 ~~~~~~~~~~~~~----~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~  206 (259)
T PRK09183        149 QRQGRYKTTLQRG----VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP  206 (259)
T ss_pred             HHCCcHHHHHHHH----hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence             000011111111    112349999999875  4555667777776433334688898875

>PHA00729 NTP-binding motif containing protein

Probab=98.38  E-value=3.3e-06  Score=85.76  Aligned_cols=131  Identities=12%  Similarity=0.138  Sum_probs=69.2

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHH
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI  449 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei  449 (629)
                      +.+.+..+...+++|+|+|||||||+|.+|+..+. .....-. .....+  .....++.++..       .+.+.++..
T Consensus         8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~-~~l~~l~-~~~~~~--d~~~~~~fid~~-------~Ll~~L~~a   76 (226)
T PHA00729          8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF-WKLNNLS-TKDDAW--QYVQNSYFFELP-------DALEKIQDA   76 (226)
T ss_pred             HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH-hhccccc-chhhHH--hcCCcEEEEEHH-------HHHHHHHHH
Confidence            33444555666899999999999999999999873 1110000 000000  000012222221       111222222


Q ss_pred             HHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          450 RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       450 ~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      ...     .....+|||||+..-.....  .  ..+.        +  .....+.++|++||..+.|.+++++++..+|.
T Consensus        77 ~~~-----~~~~dlLIIDd~G~~~~~~~--w--h~~~--------~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr  137 (226)
T PHA00729         77 IDN-----DYRIPLIIFDDAGIWLSKYV--W--YEDY--------M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR  137 (226)
T ss_pred             Hhc-----CCCCCEEEEeCCchhhcccc--h--hhhc--------c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence            211     11224899999654321100  0  0000        0  01123567889999999999999999999887


Q ss_pred             H
Q 036742          530 Q  530 (629)
Q Consensus       530 ~  530 (629)
                      .
T Consensus       138 ~  138 (226)
T PHA00729        138 E  138 (226)
T ss_pred             h
Confidence            6

>PRK05629 hypothetical protein; Validated

Probab=98.36  E-value=0.00013  Score=77.60  Aligned_cols=157  Identities=11%  Similarity=0.040  Sum_probs=112.9

Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcC
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKED  536 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~keg  536 (629)
                      ..++|+++..+.........+...+..+++.+.+|+++.....   +...|+..+.+++|.++...++..++...+.+.|
T Consensus        64 ~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g  143 (318)
T PRK05629         64 EDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHG  143 (318)
T ss_pred             CceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcC
Confidence            4579999998776555566777788777777777777754322   3446777888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHHhcCCChHHHHHHHHH
Q 036742          537 FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEILADPSPKRLVMVRGK  608 (629)
Q Consensus       537 l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir~k  608 (629)
                      +.+++++++.|++.+++|+..+-+-|+.+...    ..+..+..+++.+        +.+++..++.++....+    ..
T Consensus       144 ~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al----~~  215 (318)
T PRK05629        144 VRPTPDVVHALLEGVGSDLRELASAISQLVED----TQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAV----AS  215 (318)
T ss_pred             CCCCHHHHHHHHHHHCccHHHHHHHHHHHHhc----CCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHH----HH
Confidence            99999999999999999999999999976542    1223333444443        35566666665543333    33


Q ss_pred             HHHHHHcCCCHHHHHH
Q 036742          609 IQKLLAEFVHPKLILL  624 (629)
Q Consensus       609 ly~lL~~~i~~~~i~~  624 (629)
                      +..++..+.+|-.|+-
T Consensus       216 l~~l~~~g~~pi~il~  231 (318)
T PRK05629        216 TRRALQLGVSPVALAA  231 (318)
T ss_pred             HHHHHHcCCCcHHHHH
Confidence            4456666666655543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.35  E-value=1.5e-05  Score=87.74  Aligned_cols=191  Identities=17%  Similarity=0.173  Sum_probs=113.6

Q ss_pred             cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      .++|.......+...+.  ......++|+|.+|+||+++|+++.......                 ...++.++|....
T Consensus       140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-----------------~~~~i~~~c~~~~  202 (441)
T PRK10365        140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-----------------EKPLVTLNCAALN  202 (441)
T ss_pred             ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-----------------CCCeeeeeCCCCC
Confidence            35555444433333322  2223468999999999999999998753211                 1236788885332


Q ss_pred             hhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742          437 NAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC  496 (629)
Q Consensus       437 ~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi  496 (629)
                      . . .+... +......+..        .....+.+|||||||.|....|..|++.++...           .++++|++
T Consensus       203 ~-~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~  280 (441)
T PRK10365        203 E-S-LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAA  280 (441)
T ss_pred             H-H-HHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEe
Confidence            1 1 11111 1111111110        011234599999999999999999999987532           24567877


Q ss_pred             ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742          497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQNLRK  557 (629)
Q Consensus       497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GDiR~  557 (629)
                      ++...       .+.+.|..|+..  +.++|+-.  +++..+    |..++.+.+   ..++++++..|.... .||+|.
T Consensus       281 t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~re  360 (441)
T PRK10365        281 THRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE  360 (441)
T ss_pred             CCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHH
Confidence            76542       244555666544  44444432  233333    333333322   347999999999886 799999


Q ss_pred             HHHHHHHHHhc
Q 036742          558 AIMALEACKAL  568 (629)
Q Consensus       558 AInlLq~~~~~  568 (629)
                      +.+.++.+...
T Consensus       361 L~~~~~~~~~~  371 (441)
T PRK10365        361 LENAVERAVVL  371 (441)
T ss_pred             HHHHHHHHHHh
Confidence            99999986653

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.31  E-value=2.7e-06  Score=88.05  Aligned_cols=97  Identities=13%  Similarity=0.235  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhcc--
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI--  455 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~--  455 (629)
                      ...+++|+||||+|||+||-||++++...+.                 .++.+...          +++.++...+..  
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~-----------------sv~f~~~~----------el~~~Lk~~~~~~~  156 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI-----------------SVLFITAP----------DLLSKLKAAFDEGR  156 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC-----------------eEEEEEHH----------HHHHHHHHHHhcCc
Confidence            3458999999999999999999999863222                 25555443          122222221111  


Q ss_pred             -----Cc-CCCCeEEEEEccchh--hHHHHHHHHHHHhc-cCCCcEEEEEecCCcc
Q 036742          456 -----TP-EVSNAMIVIYEVDKA--AEHIQYLIKWIMDG-YTDSCKLILCCEDDVD  502 (629)
Q Consensus       456 -----~~-~~~~kVIIIDEID~L--s~~~q~aLlrilEe-~~~~~~~ILitN~~~~  502 (629)
                           .. -....||||||+...  +....+.+..++.. +..... |+|+|.+..
T Consensus       157 ~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~  211 (254)
T COG1484         157 LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFG  211 (254)
T ss_pred             hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCChH
Confidence                 00 011239999999886  44445555555543 333334 888886543

>PRK04132 replication factor C small subunit; Provisional

Probab=98.30  E-value=3.2e-07  Score=108.27  Aligned_cols=52  Identities=33%  Similarity=0.604  Sum_probs=48.7

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHH
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL  395 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtL  395 (629)
                      +..+|++||||++|+||+||+.+++.|+.++..+.++|+||+||||+||+..
T Consensus         5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132          5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence            3568999999999999999999999999999999999999999999999754

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.27  E-value=1.3e-05  Score=91.87  Aligned_cols=210  Identities=12%  Similarity=0.067  Sum_probs=122.7

Q ss_pred             cHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch---hh
Q 036742          363 HRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA---NA  438 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~---~~  438 (629)
                      +++++..|.=..... .+.+++|.|+.|+||++++++++..|-....+.                -+..+++..+   +.
T Consensus         8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r----------------~~p~~~t~~~L~Gg~   71 (584)
T PRK13406          8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLR----------------RLPPGIADDRLLGGL   71 (584)
T ss_pred             HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcc----------------cCCCCCcHHHccCCc
Confidence            344444443333343 567899999999999999999998763211100                1112222111   11


Q ss_pred             HHHHHHHHHHHHHHh--ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCC-----------cEEEEEecCC-----
Q 036742          439 KYALMGLVKEIRDNL--AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDS-----------CKLILCCEDD-----  500 (629)
Q Consensus       439 k~~l~~~lrei~~~~--~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~-----------~~~ILitN~~-----  500 (629)
                      +  +...++.-...+  .......+.||||||+..+....+++|+..|+...-.           .+|+|++...     
T Consensus        72 D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~  149 (584)
T PRK13406         72 D--LAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED  149 (584)
T ss_pred             h--HHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc
Confidence            0  011111100000  0011112459999999999999999999999864311           2455555322     


Q ss_pred             ccchHHHhhcc-eEeeccCCCHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHHcc--C--CHHHHHHHHHHHHhc
Q 036742          501 VDIIESVKTHC-KVIKVDPPVTHEIM-------EVLIQIARKEDFDLSMTFAAKIATKAK--Q--NLRKAIMALEACKAL  568 (629)
Q Consensus       501 ~~I~~aLrSR~-~~I~F~ppt~eei~-------~iL~~i~~kegl~is~e~L~~Ia~~s~--G--DiR~AInlLq~~~~~  568 (629)
                      ..+.++|..|| +.+.+..++..+..       .++.....-.++.++++++.++++.+.  |  ..|-.+.++..+...
T Consensus       150 ~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~  229 (584)
T PRK13406        150 ERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAA  229 (584)
T ss_pred             cCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Confidence            23888999999 46777777655432       122211122468899999998876542  2  668888888877666


Q ss_pred             CCCCCCCCCCchhHHHHHHHHH
Q 036742          569 NYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       569 ~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      +.--..+...+.++.+++.-+.
T Consensus       230 AaL~Gr~~V~~~dv~~Aa~lvL  251 (584)
T PRK13406        230 AALAGRTAVEEEDLALAARLVL  251 (584)
T ss_pred             HHHcCCCCCCHHHHHHHHHHHH
Confidence            5544555666666665555443

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.27  E-value=2.9e-05  Score=88.17  Aligned_cols=146  Identities=13%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             cccccHHHHHHHHHHHHc---------CCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccccccCCc
Q 036742          359 GFICHRHEAQLLKELVVD---------GNCP---HILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVASSA  425 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~---------g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~sS~  425 (629)
                      .|.|++++++-|.=.|-.         |+++   ||||+|.||||||.+.+.+++.+- .+.+- .+.+       ...+
T Consensus       430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg~yTSGkGs-------SavG  501 (804)
T KOG0478|consen  430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RGVYTSGKGS-------SAVG  501 (804)
T ss_pred             hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-cceeecCCcc-------chhc
Confidence            678899987655444432         2222   799999999999999999998752 21100 0000       0001


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcE
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCK  492 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~  492 (629)
                      ...++.-. ..+         ++++......--..+.|..|||+|+|+....+.|...||.-+             ..+.
T Consensus       502 LTayVtrd-~dt---------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S  571 (804)
T KOG0478|consen  502 LTAYVTKD-PDT---------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCS  571 (804)
T ss_pred             ceeeEEec-Ccc---------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence            11111110 001         011100000111234599999999999999999999998533             4445


Q ss_pred             EEEEecCCc-------------cchHHHhhcceE--eeccCCCHH
Q 036742          493 LILCCEDDV-------------DIIESVKTHCKV--IKVDPPVTH  522 (629)
Q Consensus       493 ~ILitN~~~-------------~I~~aLrSR~~~--I~F~ppt~e  522 (629)
                      |+.++|...             .|.++|.|||-.  +.|.+++..
T Consensus       572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~  616 (804)
T KOG0478|consen  572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER  616 (804)
T ss_pred             eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence            777777321             157899999953  556777655

>PHA02774 E1; Provisional

Probab=98.26  E-value=6.2e-06  Score=93.20  Aligned_cols=118  Identities=15%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          365 HEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      .....|+.|++.... ..++|+||||||||++|.+|++.+.|..                   +..+|...         
T Consensus       419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v-------------------i~fvN~~s---------  470 (613)
T PHA02774        419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV-------------------ISFVNSKS---------  470 (613)
T ss_pred             HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE-------------------EEEEECcc---------
Confidence            345677788765432 4799999999999999999999985432                   23344311         


Q ss_pred             HHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHhccC-------------CCcEEEEEecCCcc---chHH
Q 036742          444 GLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMDGYT-------------DSCKLILCCEDDVD---IIES  506 (629)
Q Consensus       444 ~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilEe~~-------------~~~~~ILitN~~~~---I~~a  506 (629)
                              .|-+..-...+|++|||+-.- ..-....|+.+++...             ...++|+|+|..-.   -...
T Consensus       471 --------~FwLqpl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~y  542 (613)
T PHA02774        471 --------HFWLQPLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKY  542 (613)
T ss_pred             --------ccccchhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHH
Confidence                    111111122359999999322 2334446777777542             22468999986443   2467


Q ss_pred             HhhcceEeeccC
Q 036742          507 VKTHCKVIKVDP  518 (629)
Q Consensus       507 LrSR~~~I~F~p  518 (629)
                      |.||+..+.|+.
T Consensus       543 L~sRi~~f~F~n  554 (613)
T PHA02774        543 LHSRITVFEFPN  554 (613)
T ss_pred             hhhhEEEEECCC
Confidence            889999999864

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.23  E-value=6.8e-05  Score=76.91  Aligned_cols=181  Identities=15%  Similarity=0.160  Sum_probs=114.7

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc--cchhh--
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN--LQANA--  438 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas--~~~~~--  438 (629)
                      +.+++..+...+..+.. -+.++|+-|+|||.+.+++...+.+...       +          ++.+..-  ...++  
T Consensus        36 h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~-------~----------~v~i~~~~~s~~~~~~   97 (269)
T COG3267          36 HNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQV-------A----------VVVIDKPTLSDATLLE   97 (269)
T ss_pred             hhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCce-------E----------EEEecCcchhHHHHHH
Confidence            34466666666665542 4779999999999999977776544332       0          1222220  00010  


Q ss_pred             --------------HHHHHHHHHHHHHHhccCcCCCC-eEEEEEccchhhHHHHHHHHHHHhc---cCCCcEEEEEecC-
Q 036742          439 --------------KYALMGLVKEIRDNLAITPEVSN-AMIVIYEVDKAAEHIQYLIKWIMDG---YTDSCKLILCCED-  499 (629)
Q Consensus       439 --------------k~~l~~~lrei~~~~~~~~~~~~-kVIIIDEID~Ls~~~q~aLlrilEe---~~~~~~~ILitN~-  499 (629)
                                    ...+...-+.+..   ....++. .++++||++.+...+.++|+.+.+.   +.+...++++... 
T Consensus        98 ai~~~l~~~p~~~~~~~~e~~~~~L~a---l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~  174 (269)
T COG3267          98 AIVADLESQPKVNVNAVLEQIDRELAA---LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK  174 (269)
T ss_pred             HHHHHhccCccchhHHHHHHHHHHHHH---HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc
Confidence                          0011111111111   1122333 5999999999999999999988763   3333446776532 


Q ss_pred             ----Ccc-chHHHhhcceE-eeccCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          500 ----DVD-IIESVKTHCKV-IKVDPPVTHEIMEVLIQIARKEDF---DLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       500 ----~~~-I~~aLrSR~~~-I~F~ppt~eei~~iL~~i~~kegl---~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                          +.. .+..+..||.+ |...|++.++...+|+..++..+.   -++++.+..|...+.|-.|...+.+..
T Consensus       175 L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~  248 (269)
T COG3267         175 LRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL  248 (269)
T ss_pred             cchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence                111 35677789987 999999999999999888776544   247889999999999955555544443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=8.7e-06  Score=78.18  Aligned_cols=147  Identities=12%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC--------CCCCcccccccc--CCcceE---EEecccch-hhHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWN--------EKWPTQVLVPVA--SSAHHV---ELNVNLQA-NAKYALMGLV  446 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~--------~~~~~~v~~~i~--sS~~vl---eInas~~~-~~k~~l~~~l  446 (629)
                      .++++|+||+||||++.-++..|...++..        +....++.|.+.  .++.-.   ..+.+..+ +...+..+.+
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l   86 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL   86 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence            488999999999999999999885443211        111112222211  111111   11111100 1111122333


Q ss_pred             HHHHHHhccCcCCCCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCCc--cchHHHhhcceEeeccCCCH
Q 036742          447 KEIRDNLAITPEVSNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDV--DIIESVKTHCKVIKVDPPVT  521 (629)
Q Consensus       447 rei~~~~~~~~~~~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~~--~I~~aLrSR~~~I~F~ppt~  521 (629)
                      .++.-.........-.|||||||..|   +.....++..++.   ...++|.+-+..+  -+...++.+..++-|  +++
T Consensus        87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~P~v~~ik~~~~v~v~--lt~  161 (179)
T COG1618          87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRHPLVQRIKKLGGVYVF--LTP  161 (179)
T ss_pred             HHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCChHHHHhhhcCCEEEE--Ecc
Confidence            32221100000001249999999998   5566666666665   4455777766543  367788888777665  444


Q ss_pred             HHHHHHHHHHH
Q 036742          522 HEIMEVLIQIA  532 (629)
Q Consensus       522 eei~~iL~~i~  532 (629)
                      +..-.++.+++
T Consensus       162 ~NR~~i~~~Il  172 (179)
T COG1618         162 ENRNRILNEIL  172 (179)
T ss_pred             chhhHHHHHHH
Confidence            33334444443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.22  E-value=8.3e-07  Score=86.29  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             CeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCC--ccchHHHhhc--ceEeeccCCCHHHHH
Q 036742          461 NAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDD--VDIIESVKTH--CKVIKVDPPVTHEIM  525 (629)
Q Consensus       461 ~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~--~~I~~aLrSR--~~~I~F~ppt~eei~  525 (629)
                      ..+||||||..|   .....+++..+++   +..++|.+-...  ..+.+.+++|  +.++.+.+-+.+.+.
T Consensus        96 ~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~  164 (168)
T PF03266_consen   96 SDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP  164 (168)
T ss_dssp             CHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred             CCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence            349999999998   6677888888887   556677766554  3488999998  778887766554443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK07914 hypothetical protein; Reviewed

Probab=98.20  E-value=0.00052  Score=73.22  Aligned_cols=160  Identities=9%  Similarity=0.022  Sum_probs=114.8

Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhc-ceEeeccCC-CHHHHHHHHHHHHHh
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTH-CKVIKVDPP-VTHEIMEVLIQIARK  534 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR-~~~I~F~pp-t~eei~~iL~~i~~k  534 (629)
                      ..+||+|++...+.....+.|..+++.++..+.+|++++....   +..+|+.. +.++.|.++ +..++..++...+.+
T Consensus        64 ~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~  143 (320)
T PRK07914         64 EERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRS  143 (320)
T ss_pred             CceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            4569999998777666677888898888777777777543222   34466655 458899988 999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHHhcCCChHHHHHHH
Q 036742          535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEILADPSPKRLVMVR  606 (629)
Q Consensus       535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir  606 (629)
                      .|+.++++++..|++.+++|+..+-+-|+.+..  +  ..+..+..+++.+        +.++++.++.+.....+    
T Consensus       144 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~--~--~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~----  215 (320)
T PRK07914        144 LRVKVDDDTVTALLDAVGSDLRELASACSQLVA--D--TGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAA----  215 (320)
T ss_pred             cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhc--C--CCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHH----
Confidence            999999999999999999999999999986543  1  1122333444333        35666666666544433    


Q ss_pred             HHHHHHHHcCCCHHHHHHHHh
Q 036742          607 GKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       607 ~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..+.+++..+.+|-.|+--|+
T Consensus       216 ~~l~~L~~~ge~p~~il~~l~  236 (320)
T PRK07914        216 EALRWAMMRGEPHVVLADALA  236 (320)
T ss_pred             HHHHHHHHCCCchHHHHHHHH
Confidence            335567777887777664443

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=98.17  E-value=1.7e-05  Score=89.00  Aligned_cols=138  Identities=15%  Similarity=0.190  Sum_probs=78.9

Q ss_pred             CcccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          358 NGFICHRHEAQLLKELVVDGNCP------------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p------------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      -.|.|+++++..+.-.|-.|...            |+||+|.|||||+-+.+.+++-.. -.+          +.....+
T Consensus       449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~-RAV----------~tTGqGA  517 (854)
T KOG0477|consen  449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP-RAV----------FTTGQGA  517 (854)
T ss_pred             chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc-cee----------EeccCCc
Confidence            35779999998888888644211            699999999999999999887531 111          1111111


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-------------CCCcE
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-------------TDSCK  492 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-------------~~~~~  492 (629)
                      .-+-+.++..+..      +.++..-.....--..+.|.+|||+|.|.......+...||.-             ...|.
T Consensus       518 SavGLTa~v~KdP------vtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct  591 (854)
T KOG0477|consen  518 SAVGLTAYVRKDP------VTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT  591 (854)
T ss_pred             cccceeEEEeeCC------ccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence            1222222211100      0011100000000112359999999999765554555545432             25677


Q ss_pred             EEEEecC---Cc----------cchHHHhhcce
Q 036742          493 LILCCED---DV----------DIIESVKTHCK  512 (629)
Q Consensus       493 ~ILitN~---~~----------~I~~aLrSR~~  512 (629)
                      +|+++|.   .+          .+.++|.||+-
T Consensus       592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFD  624 (854)
T KOG0477|consen  592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFD  624 (854)
T ss_pred             hheecCCCCCccCCccchhhccccccchhhhcc
Confidence            8888886   22          25689999974

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.15  E-value=9.1e-05  Score=75.73  Aligned_cols=137  Identities=18%  Similarity=0.268  Sum_probs=84.8

Q ss_pred             HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742          368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK  447 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr  447 (629)
                      ..|-.++...  -+..++||.|||||++++.+|+.+ |..                   ++.+|++..... ..+..+++
T Consensus        23 ~~l~~al~~~--~~~~~~GpagtGKtetik~La~~l-G~~-------------------~~vfnc~~~~~~-~~l~ril~   79 (231)
T PF12774_consen   23 LTLTQALSLN--LGGALSGPAGTGKTETIKDLARAL-GRF-------------------VVVFNCSEQMDY-QSLSRILK   79 (231)
T ss_dssp             HHHHHHHCTT--TEEEEESSTTSSHHHHHHHHHHCT-T---------------------EEEEETTSSS-H-HHHHHHHH
T ss_pred             HHHHHHhccC--CCCCCcCCCCCCchhHHHHHHHHh-CCe-------------------EEEecccccccH-HHHHHHHH
Confidence            3444455433  245689999999999999999986 554                   577888765443 34556666


Q ss_pred             HHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-------c-------------CCCcEEEEEecC----Cccc
Q 036742          448 EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-------Y-------------TDSCKLILCCED----DVDI  503 (629)
Q Consensus       448 ei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-------~-------------~~~~~~ILitN~----~~~I  503 (629)
                      .+...        +.-+++||+++|..+....+-..+..       .             ..++.+++|.|.    ...+
T Consensus        80 G~~~~--------GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~L  151 (231)
T PF12774_consen   80 GLAQS--------GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSEL  151 (231)
T ss_dssp             HHHHH--------T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S
T ss_pred             HHhhc--------CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccC
Confidence            65543        34799999999987665554333221       1             134456677764    3458


Q ss_pred             hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCC
Q 036742          504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFD  538 (629)
Q Consensus       504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~  538 (629)
                      ++.|+.-+..+.+..|+...+.+++.   ...|+.
T Consensus       152 P~nLk~lFRpvam~~PD~~~I~ei~L---~s~GF~  183 (231)
T PF12774_consen  152 PENLKALFRPVAMMVPDLSLIAEILL---LSQGFK  183 (231)
T ss_dssp             -HHHCTTEEEEE--S--HHHHHHHHH---HCCCTS
T ss_pred             CHhHHHHhheeEEeCCCHHHHHHHHH---HHcCch
Confidence            99999999999999998877777664   456664

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.14  E-value=5.5e-06  Score=79.58  Aligned_cols=46  Identities=35%  Similarity=0.587  Sum_probs=32.1

Q ss_pred             cccccHHHHHHHHHHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          359 GFICHRHEAQLLKELVV---DGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.++.++.|..++.   .+..+.++|+|++|+|||++++.++..+.
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            37899999999999993   33456899999999999999999888764

>PRK05907 hypothetical protein; Provisional

Probab=98.11  E-value=0.0013  Score=70.23  Aligned_cols=221  Identities=13%  Similarity=0.110  Sum_probs=141.7

Q ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHH
Q 036742          367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV  446 (629)
Q Consensus       367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~l  446 (629)
                      +..+.+.++.|. |..++||..-   -.....+...+.+...                   ..++.....         +
T Consensus         7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-------------------~~fdg~~~~---------~   54 (311)
T PRK05907          7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-------------------SEFDGQGLL---------Q   54 (311)
T ss_pred             HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-------------------ceecCCCCC---------H
Confidence            344555677787 8999999766   4445555444433321                   111221111         1


Q ss_pred             HHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE-EEecCCcc---chHHHhhcceEe----ecc
Q 036742          447 KEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI-LCCEDDVD---IIESVKTHCKVI----KVD  517 (629)
Q Consensus       447 rei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I-LitN~~~~---I~~aLrSR~~~I----~F~  517 (629)
                      .++...+...+-+ ..++|++.+.+.+.....+.|..+++.+++.+.+| ++.. .+.   +...|.. ...+    .|.
T Consensus        55 ~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-~d~~kkl~K~i~k-~~~v~~~~e~~  132 (311)
T PRK05907         55 QELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-QECFSSLSKKLSS-ALCLSLFGEWF  132 (311)
T ss_pred             HHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-ccHHHHHHHHHhh-cceeccccccC
Confidence            2333333333322 34577888777776666778999999888865555 5552 222   2233432 4444    899


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHH
Q 036742          518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIE  588 (629)
Q Consensus       518 ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~e  588 (629)
                      ++...++..++...+.+.|+.++++++..+++.+ ++|+..+.+-|+.+.+...  .....+..+++.+        +++
T Consensus       133 ~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g--~~~~It~e~V~~lv~~s~e~nIF~  210 (311)
T PRK05907        133 ADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMG--KKESLEASDIQSFVVKKEAASLWK  210 (311)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC--CCCeECHHHHHHHhcCcccccHHH
Confidence            9999999999999999999999999999999999 6999999999998776421  1122333444443        466


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHc-CCCHHHHHHHHh
Q 036742          589 LAAEILADPSPKRLVMVRGKIQKLLAE-FVHPKLILLVMH  627 (629)
Q Consensus       589 i~~~il~~~s~~~L~~ir~kly~lL~~-~i~~~~i~~~La  627 (629)
                      +...+..++....+    .-+++++.. +..|-.|+--|+
T Consensus       211 L~dai~~~~~~~Al----~il~~Ll~~~ge~p~~ILall~  246 (311)
T PRK05907        211 LRDALLRRDRVEGH----SLLRSLLSDMGEDPLGIIAFLR  246 (311)
T ss_pred             HHHHHHccCHHHHH----HHHHHHHHhcCCChHHHHHHHH
Confidence            67766666544433    456678888 888887766554

>PRK08487 DNA polymerase III subunit delta; Validated

Probab=98.07  E-value=0.0012  Score=70.60  Aligned_cols=222  Identities=15%  Similarity=0.155  Sum_probs=138.0

Q ss_pred             HHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHH
Q 036742          368 QLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV  446 (629)
Q Consensus       368 ~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~l  446 (629)
                      +.|...++.|.. |..||||.-=--.-..+..|.+.+..... .                .. +..+.         ..+
T Consensus         4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~----------------~~-~~~~~---------~~~   56 (328)
T PRK08487          4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-L----------------KT-LYFDE---------YDF   56 (328)
T ss_pred             HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-h----------------hh-hchhh---------ccH
Confidence            356666777765 56779997766666666666655432211 0                00 00110         012


Q ss_pred             HHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhc--ceEeeccCCC
Q 036742          447 KEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTH--CKVIKVDPPV  520 (629)
Q Consensus       447 rei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR--~~~I~F~ppt  520 (629)
                      .++...+...+-+ ..+||+|.+...+.......|...++.+++.+.+|++......   +-..+...  ...+.|.+++
T Consensus        57 ~~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~  136 (328)
T PRK08487         57 EQAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPN  136 (328)
T ss_pred             HHHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCC
Confidence            3333333333322 3458898887666555556777777776655545543333221   11222222  4578999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHH
Q 036742          521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAE  592 (629)
Q Consensus       521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~  592 (629)
                      ..++..++...+.+.|+.++++++..|+..+++|+..+.+-|+.+.+...     ..+..+++.++        .+++..
T Consensus       137 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-----~It~edV~~~v~~~~e~~vF~l~da  211 (328)
T PRK08487        137 AREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-----PITLKDIQELVFGLGSVSFEDFFEK  211 (328)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-----CCCHHHHHHHhcccccccHHHHHHH
Confidence            99999999999999999999999999999999999999999998877532     23334444433        556666


Q ss_pred             HhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          593 ILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       593 il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ++.+..      ....+..++..+.+|-.|+--|+
T Consensus       212 i~~g~~------a~~~l~~L~~~g~~pi~Il~~L~  240 (328)
T PRK08487        212 LLNKKD------IKDDLEKLLEEGFNEIALLNSLE  240 (328)
T ss_pred             HHCCCc------HHHHHHHHHHCCCCHHHHHHHHH
Confidence            666552      22345567777777766655443

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.06  E-value=0.00041  Score=74.19  Aligned_cols=194  Identities=14%  Similarity=0.141  Sum_probs=114.2

Q ss_pred             CCCcccccHHHHHHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVDG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      -|+.|++.....+.+..-.++- - -..+||.|..||||-.+|++.-..  ..               ..+..++-+||.
T Consensus       202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~--S~---------------R~~~pFlalNCA  264 (511)
T COG3283         202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA--SP---------------RHSKPFLALNCA  264 (511)
T ss_pred             chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc--Cc---------------ccCCCeeEeecC
Confidence            4677777655444333222211 1 125999999999999999954322  11               123346778874


Q ss_pred             cchhhHHHHHHHHHHHHH---HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecC
Q 036742          434 LQANAKYALMGLVKEIRD---NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCED  499 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~---~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~  499 (629)
                      .-.... .-.+++.....   .........+..+|+|||..|++..|..|++++...+           -++++|++|..
T Consensus       265 ~lPe~~-aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~  343 (511)
T COG3283         265 SLPEDA-AESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQV  343 (511)
T ss_pred             CCchhH-hHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccc
Confidence            211110 00111111100   0000001123489999999999999999999997543           33567777654


Q ss_pred             C-------ccchHHHhhcceEeeccCCCHHH--------HHHHHHHHHHhcCC---CCCHHHHHHHHHH-ccCCHHHHHH
Q 036742          500 D-------VDIIESVKTHCKVIKVDPPVTHE--------IMEVLIQIARKEDF---DLSMTFAAKIATK-AKQNLRKAIM  560 (629)
Q Consensus       500 ~-------~~I~~aLrSR~~~I~F~ppt~ee--------i~~iL~~i~~kegl---~is~e~L~~Ia~~-s~GDiR~AIn  560 (629)
                      .       ..+-+.|--|..++.+.-|+-.+        ..-.+.++|.+.++   +++++.+.++.+. ..|++|+.-|
T Consensus       344 nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N  423 (511)
T COG3283         344 NLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKN  423 (511)
T ss_pred             cHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHH
Confidence            3       12456677787766555444332        22356677777776   4577888887765 5799999999


Q ss_pred             HHHHHHh
Q 036742          561 ALEACKA  567 (629)
Q Consensus       561 lLq~~~~  567 (629)
                      .+-.++.
T Consensus       424 ~iyRA~s  430 (511)
T COG3283         424 AIYRALT  430 (511)
T ss_pred             HHHHHHH
Confidence            9865543

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=5.4e-05  Score=83.96  Aligned_cols=158  Identities=17%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE-ecccchhh--HHHHHHHHHHHHHHhccCc
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANA--KYALMGLVKEIRDNLAITP  457 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI-nas~~~~~--k~~l~~~lrei~~~~~~~~  457 (629)
                      .+||+||||+|||+||-.+|..- ...                   ++.+ .+.+..|.  ......    +.+.|..+.
T Consensus       540 SvLl~Gp~~sGKTaLAA~iA~~S-~FP-------------------FvKiiSpe~miG~sEsaKc~~----i~k~F~DAY  595 (744)
T KOG0741|consen  540 SVLLEGPPGSGKTALAAKIALSS-DFP-------------------FVKIISPEDMIGLSESAKCAH----IKKIFEDAY  595 (744)
T ss_pred             EEEEecCCCCChHHHHHHHHhhc-CCC-------------------eEEEeChHHccCccHHHHHHH----HHHHHHHhh
Confidence            79999999999999999999873 322                   2333 33221111  111111    112222222


Q ss_pred             CCCCeEEEEEccchh----------hHHHHHHHHHHHhccC-CC-cEEEEEecCCccchHH--Hhhcc-eEeeccCCCH-
Q 036742          458 EVSNAMIVIYEVDKA----------AEHIQYLIKWIMDGYT-DS-CKLILCCEDDVDIIES--VKTHC-KVIKVDPPVT-  521 (629)
Q Consensus       458 ~~~~kVIIIDEID~L----------s~~~q~aLlrilEe~~-~~-~~~ILitN~~~~I~~a--LrSR~-~~I~F~ppt~-  521 (629)
                      ...-.||+||++++|          +.-...+|+-++.+.+ .. ..+|++|.....++..  +..-+ ..+.++.++. 
T Consensus       596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~  675 (744)
T KOG0741|consen  596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG  675 (744)
T ss_pred             cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence            222249999999998          2234455555555433 33 3455655544333321  22222 3577777765 


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHHHHh
Q 036742          522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-----NLRKAIMALEACKA  567 (629)
Q Consensus       522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-----DiR~AInlLq~~~~  567 (629)
                      +++.++|...    ++ +.++....+++.-.+     -+.+.+.+++.+..
T Consensus       676 ~~~~~vl~~~----n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q  721 (744)
T KOG0741|consen  676 EQLLEVLEEL----NI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ  721 (744)
T ss_pred             HHHHHHHHHc----cC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence            6676776543    22 344445554443322     37888888887764

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.02  E-value=1.9e-05  Score=70.81  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          382 ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |+|+||||+|||++|+.||+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999875

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.00  E-value=0.00052  Score=82.32  Aligned_cols=178  Identities=12%  Similarity=0.108  Sum_probs=110.6

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .|..-.+++-.+.+.+.|...   ...+-++|+||+|.||||++..++... +.                    +.-++.
T Consensus         9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~~--------------------~~w~~l   64 (903)
T PRK04841          9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-NN--------------------LGWYSL   64 (903)
T ss_pred             CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-CC--------------------eEEEec
Confidence            466667888888777766532   345679999999999999999888653 21                    111111


Q ss_pred             --ccch--hh-HHHH--------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHH
Q 036742          433 --NLQA--NA-KYAL--------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLI  480 (629)
Q Consensus       433 --s~~~--~~-k~~l--------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aL  480 (629)
                        .+..  .+ .+++                          ...+..+.....  ......||||||++.+. ......|
T Consensus        65 ~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~lvlDD~h~~~~~~~~~~l  142 (903)
T PRK04841         65 DESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELA--DWHQPLYLVIDDYHLITNPEIHEAM  142 (903)
T ss_pred             CcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHh--cCCCCEEEEEeCcCcCCChHHHHHH
Confidence              1100  00 0000                          011111111111  11234599999999996 4445677


Q ss_pred             HHHHhccCCCcEEEEEecCCccc-hHHHhhcc--eEeecc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742          481 KWIMDGYTDSCKLILCCEDDVDI-IESVKTHC--KVIKVD--PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL  555 (629)
Q Consensus       481 lrilEe~~~~~~~ILitN~~~~I-~~aLrSR~--~~I~F~--ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi  555 (629)
                      ..++...+....+|+++.....+ ...++-+-  ..+...  +++.+|....+...   .+..++++.+..|.+.+.|.+
T Consensus       143 ~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp  219 (903)
T PRK04841        143 RFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWA  219 (903)
T ss_pred             HHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChH
Confidence            77787777888888887653333 23343333  334444  88999999888643   356789999999999999988


Q ss_pred             HHHH
Q 036742          556 RKAI  559 (629)
Q Consensus       556 R~AI  559 (629)
                      --+-
T Consensus       220 ~~l~  223 (903)
T PRK04841        220 TALQ  223 (903)
T ss_pred             HHHH
Confidence            5543

>PF14516 AAA_35: AAA-like domain

Probab=97.91  E-value=0.0013  Score=70.68  Aligned_cols=184  Identities=17%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             cccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc----
Q 036742          361 ICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ----  435 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~----  435 (629)
                      |..+.+-+.+.+.+.. |.  .+.|+||..+|||++...+...+...++                 .++.++....    
T Consensus        14 i~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~-----------------~~v~id~~~~~~~~   74 (331)
T PF14516_consen   14 IERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGY-----------------RCVYIDLQQLGSAI   74 (331)
T ss_pred             cCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCC-----------------EEEEEEeecCCCcc
Confidence            4445455556555554 55  5899999999999999999988754332                 1233332110    


Q ss_pred             -hhhHHHHHHHHHHHHH---------------------------HhccCcCCCCeEEEEEccchhhH------HHHHHHH
Q 036742          436 -ANAKYALMGLVKEIRD---------------------------NLAITPEVSNAMIVIYEVDKAAE------HIQYLIK  481 (629)
Q Consensus       436 -~~~k~~l~~~lrei~~---------------------------~~~~~~~~~~kVIIIDEID~Ls~------~~q~aLl  481 (629)
                       ......+..+...+..                           .+.......+-||+|||||.+..      +....|+
T Consensus        75 ~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR  154 (331)
T PF14516_consen   75 FSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLR  154 (331)
T ss_pred             cCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHH
Confidence             0001111111111111                           11111112334999999999853      3455555


Q ss_pred             HHHhccC-----CCcEEEEEecCCccchHHH-h---hcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Q 036742          482 WIMDGYT-----DSCKLILCCEDDVDIIESV-K---THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK  552 (629)
Q Consensus       482 rilEe~~-----~~~~~ILitN~~~~I~~aL-r---SR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~  552 (629)
                      ...+...     ....+|++......+...+ .   ..+..+.++.++.+|+...+..    .+..+++..++.|...++
T Consensus       155 ~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tg  230 (331)
T PF14516_consen  155 SWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTG  230 (331)
T ss_pred             HHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHC
Confidence            5555322     2233555443222222111 1   3345688999999998776654    456788888999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 036742          553 QNLRKAIMALEACKA  567 (629)
Q Consensus       553 GDiR~AInlLq~~~~  567 (629)
                      |..--.-.++..+..
T Consensus       231 GhP~Lv~~~~~~l~~  245 (331)
T PF14516_consen  231 GHPYLVQKACYLLVE  245 (331)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            988655555555543

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.88  E-value=0.00012  Score=72.68  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      ++..+.+..++..+ -+.+++.||||||||++++.++..+.....                 .++-+.+. ..... .+.
T Consensus         4 ~~Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~-----------------~v~~~apT-~~Aa~-~L~   63 (196)
T PF13604_consen    4 EEQREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGK-----------------RVIGLAPT-NKAAK-ELR   63 (196)
T ss_dssp             HHHHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT-------------------EEEEESS-HHHHH-HHH
T ss_pred             HHHHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCC-----------------eEEEECCc-HHHHH-HHH
Confidence            34455566666654 346889999999999999999887754321                 13433332 21111 111


Q ss_pred             HHHH----HHHHHhccCc---------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          444 GLVK----EIRDNLAITP---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       444 ~~lr----ei~~~~~~~~---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      +...    .+...+....         .....||||||+..+.......|+..+..  .++++||+....
T Consensus        64 ~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~  131 (196)
T PF13604_consen   64 EKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN  131 (196)
T ss_dssp             HHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred             HhhCcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence            1100    0001111000         12235999999999998888777777664  467899988754

>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2

Probab=97.86  E-value=0.00021  Score=68.49  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CeEEEEEcc----chhhHHHHHHHHHHHhccCCCcEEEEEec-CCc---cchHHHhhcceEeeccCCCHHHHHHHHHHHH
Q 036742          461 NAMIVIYEV----DKAAEHIQYLIKWIMDGYTDSCKLILCCE-DDV---DIIESVKTHCKVIKVDPPVTHEIMEVLIQIA  532 (629)
Q Consensus       461 ~kVIIIDEI----D~Ls~~~q~aLlrilEe~~~~~~~ILitN-~~~---~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~  532 (629)
                      .+||+|.++    +.........|...+..+..++.+|+.++ ..+   .+...+...+.++.|.++...++..+++..+
T Consensus        58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~  137 (172)
T PF06144_consen   58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERA  137 (172)
T ss_dssp             EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHH
T ss_pred             CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHH
Confidence            469999998    55667788889999998889999999888 333   2567778888999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          533 RKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       533 ~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      .+.|+.+++++++.|++..++|++.+.+-|+.++
T Consensus       138 ~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~  171 (172)
T PF06144_consen  138 KKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS  171 (172)
T ss_dssp             HHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998765

7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.85  E-value=0.0012  Score=72.92  Aligned_cols=130  Identities=17%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE  448 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre  448 (629)
                      .+.+.+..... .++|+||-+|||||+++.+.+.+...                    .++++-.+.......+.+.++.
T Consensus        28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~--------------------~iy~~~~d~~~~~~~l~d~~~~   86 (398)
T COG1373          28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE--------------------IIYINFDDLRLDRIELLDLLRA   86 (398)
T ss_pred             HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc--------------------eEEEEecchhcchhhHHHHHHH
Confidence            33344433332 78999999999999998887764221                    3555554443333333455555


Q ss_pred             HHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc----chHHHhhcceEeeccCCCHHHH
Q 036742          449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD----IIESVKTHCKVIKVDPPVTHEI  524 (629)
Q Consensus       449 i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~----I~~aLrSR~~~I~F~ppt~eei  524 (629)
                      ....+..    ....||||||+.+.. -+.++..+.+....  .|++++.....    +-+.|.-|...+.+.|++-.|.
T Consensus        87 ~~~~~~~----~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef  159 (398)
T COG1373          87 YIELKER----EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF  159 (398)
T ss_pred             HHHhhcc----CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence            5444433    345899999999854 44556666664433  56666554333    4677888989999999999887


Q ss_pred             HH
Q 036742          525 ME  526 (629)
Q Consensus       525 ~~  526 (629)
                      ..
T Consensus       160 l~  161 (398)
T COG1373         160 LK  161 (398)
T ss_pred             Hh
Confidence            64

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=97.85  E-value=6.6e-05  Score=85.14  Aligned_cols=170  Identities=16%  Similarity=0.222  Sum_probs=107.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH-HHHHHHHHHHhccCc--
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL-MGLVKEIRDNLAITP--  457 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l-~~~lrei~~~~~~~~--  457 (629)
                      ++|++|.+||||-.+|++|-..-..                  .+.++-+||..-..  ..+ .++|......|....  
T Consensus       338 pvll~GEtGtGKe~laraiH~~s~~------------------~gpfvAvNCaAip~--~liesELFGy~~GafTga~~k  397 (606)
T COG3284         338 PVLLQGETGTGKEVLARAIHQNSEA------------------AGPFVAVNCAAIPE--ALIESELFGYVAGAFTGARRK  397 (606)
T ss_pred             CeEecCCcchhHHHHHHHHHhcccc------------------cCCeEEEEeccchH--HhhhHHHhccCccccccchhc
Confidence            5999999999999999999876322                  22367777742211  111 123333333332211  


Q ss_pred             -------CCCCeEEEEEccchhhHHHHHHHHHHHhccC----------CCcEEEEEecCCc-------cchHHHhhcce-
Q 036742          458 -------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------DSCKLILCCEDDV-------DIIESVKTHCK-  512 (629)
Q Consensus       458 -------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------~~~~~ILitN~~~-------~I~~aLrSR~~-  512 (629)
                             ...+..+|+|||..|.-+.|..|++++++..          -.++||.+|+..-       .+-+.|--|+. 
T Consensus       398 G~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~  477 (606)
T COG3284         398 GYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA  477 (606)
T ss_pred             cccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC
Confidence                   1123499999999999999999999998642          2234666666531       24566666764 


Q ss_pred             -EeeccCCCHH-HHHHHHHHHHHh---cCCCCCHHHHHHHHH-HccCCHHHHHHHHHHHHhcCC
Q 036742          513 -VIKVDPPVTH-EIMEVLIQIARK---EDFDLSMTFAAKIAT-KAKQNLRKAIMALEACKALNY  570 (629)
Q Consensus       513 -~I~F~ppt~e-ei~~iL~~i~~k---egl~is~e~L~~Ia~-~s~GDiR~AInlLq~~~~~~~  570 (629)
                       +|.++++-.. +....|.++..+   ..+.++++++..|.. ...|++|...|.|+.+++...
T Consensus       478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~  541 (606)
T COG3284         478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD  541 (606)
T ss_pred             eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence             4555554321 222333333333   447889999888654 467999999999998776543

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=97.77  E-value=3.3e-05  Score=89.36  Aligned_cols=134  Identities=15%  Similarity=0.206  Sum_probs=82.1

Q ss_pred             CcccccHHHHHHHHHHHHcCC---------C---CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          358 NGFICHRHEAQLLKELVVDGN---------C---PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~---------~---p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      -.|.|++++++.|.-.|-.|.         .   =||||.|.||+||+.|.+.+++.+- ..++-          .....
T Consensus       286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-r~vyt----------sgkgs  354 (682)
T COG1241         286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-RGVYT----------SGKGS  354 (682)
T ss_pred             ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-ceEEE----------ccccc
Confidence            578899998887776664332         1   1899999999999999999998642 11100          00000


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------  488 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------  488 (629)
                      ...-+.++..+.       ..   ...+.+..    ...+.|++|||+|.|......+|...||..+             
T Consensus       355 s~~GLTAav~rd-------~~---tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLn  424 (682)
T COG1241         355 SAAGLTAAVVRD-------KV---TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLN  424 (682)
T ss_pred             cccCceeEEEEc-------cC---CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecc
Confidence            011112211110       00   00111111    1234599999999999999999999999653             


Q ss_pred             CCcEEEEEecCCc-------------cchHHHhhcce
Q 036742          489 DSCKLILCCEDDV-------------DIIESVKTHCK  512 (629)
Q Consensus       489 ~~~~~ILitN~~~-------------~I~~aLrSR~~  512 (629)
                      ..|-++.+||...             .+.++|.|||-
T Consensus       425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFD  461 (682)
T COG1241         425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFD  461 (682)
T ss_pred             hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCC
Confidence            3344667777643             15789999994

>PRK10536 hypothetical protein; Provisional

Probab=97.77  E-value=0.00026  Score=73.31  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |.+.......+..++...  ..+++.||+|||||+||.+++.+.
T Consensus        57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~   98 (262)
T PRK10536         57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence            444555556666777664  478999999999999999999863

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.76  E-value=0.0001  Score=80.19  Aligned_cols=120  Identities=14%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc---chhhHHHH--HHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL---QANAKYAL--MGLVKEIRDNL  453 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~---~~~~k~~l--~~~lrei~~~~  453 (629)
                      .++++||||+|+|||.|.-++...+-....  . +              +.+....   ........  .+-+..+....
T Consensus        62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~-R--------------~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l  124 (362)
T PF03969_consen   62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRK--R-R--------------VHFHEFMLDVHSRLHQLRGQDDPLPQVADEL  124 (362)
T ss_pred             CceEEEECCCCCchhHHHHHHHHhCCcccc--c-c--------------ccccHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            458999999999999999999887633211  0 0              0000000   00000000  00011111111


Q ss_pred             ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc--------------chHHHhhcceEeeccC
Q 036742          454 AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD--------------IIESVKTHCKVIKVDP  518 (629)
Q Consensus       454 ~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~--------------I~~aLrSR~~~I~F~p  518 (629)
                      .    ....||+|||++--.....-.|.++++. +..++.+|+|+|.+..              .++.|..+|.++.+..
T Consensus       125 ~----~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~  200 (362)
T PF03969_consen  125 A----KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG  200 (362)
T ss_pred             H----hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence            1    1224999999987755555555555552 3467788889987533              2456788998888876


Q ss_pred             C
Q 036742          519 P  519 (629)
Q Consensus       519 p  519 (629)
                      .
T Consensus       201 ~  201 (362)
T PF03969_consen  201 G  201 (362)
T ss_pred             C
Confidence            5

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.76  E-value=0.00098  Score=73.27  Aligned_cols=105  Identities=10%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhc------cCCCcEEEEEecCCcc---chHHHhhcc-eEeeccCCCHHHHHHHHHHH
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDG------YTDSCKLILCCEDDVD---IIESVKTHC-KVIKVDPPVTHEIMEVLIQI  531 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe------~~~~~~~ILitN~~~~---I~~aLrSR~-~~I~F~ppt~eei~~iL~~i  531 (629)
                      .||+||.+..-... .+.++..+-+      -..-..||+.|++...   |..+|-+|. ..|.+...+++..+.++...
T Consensus       150 PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~  228 (431)
T PF10443_consen  150 PVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ  228 (431)
T ss_pred             CEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence            49999998665433 3333332221      1244578888877543   567777665 56889999999988888877


Q ss_pred             HHhcC-C-------------------CCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          532 ARKED-F-------------------DLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       532 ~~keg-l-------------------~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      +.... .                   ......++..+...+|-+...-.+.+.++.
T Consensus       229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks  284 (431)
T PF10443_consen  229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS  284 (431)
T ss_pred             hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence            75431 1                   124556777888888877777666666654

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.71  E-value=0.00061  Score=83.29  Aligned_cols=146  Identities=18%  Similarity=0.306  Sum_probs=99.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC-
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV-  459 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~-  459 (629)
                      .+||.||..+|||+++..+|++. |..                   ++.||-.....        +.+.+..|.....+ 
T Consensus       890 P~LiQGpTSSGKTSMI~yla~~t-ghk-------------------fVRINNHEHTd--------lqeYiGTyvTdd~G~  941 (4600)
T COG5271         890 PLLIQGPTSSGKTSMILYLARET-GHK-------------------FVRINNHEHTD--------LQEYIGTYVTDDDGS  941 (4600)
T ss_pred             cEEEecCCCCCcchHHHHHHHHh-Ccc-------------------EEEecCcccch--------HHHHhhceeecCCCc
Confidence            48999999999999999999996 543                   34444422211        11112222211111 


Q ss_pred             -------------CCeEEEEEccchhhHHHHHHHHHHHhccC--------------CCcEEEEEecCCcc-------chH
Q 036742          460 -------------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------------DSCKLILCCEDDVD-------IIE  505 (629)
Q Consensus       460 -------------~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------------~~~~~ILitN~~~~-------I~~  505 (629)
                                   .+--|++||..-...++.++|.++++...              .+.+ +++|..|..       +..
T Consensus       942 lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~-lFATQNppg~YgGRK~LSr 1020 (4600)
T COG5271         942 LSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR-LFATQNPPGGYGGRKGLSR 1020 (4600)
T ss_pred             eeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee-EEeecCCCccccchHHHHH
Confidence                         12379999999999999999999997422              2222 344444332       678


Q ss_pred             HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 036742          506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NLRKAIM  560 (629)
Q Consensus       506 aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-DiR~AIn  560 (629)
                      ++|.|+..++|...+.+++..||..     ++.+.+.....|++...| .+|+.++
T Consensus      1021 AFRNRFlE~hFddipedEle~ILh~-----rc~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271        1021 AFRNRFLEMHFDDIPEDELEEILHG-----RCEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred             HHHhhhHhhhcccCcHHHHHHHHhc-----cCccCHHHHHHHHHHHHHhhhhhhHH
Confidence            9999999999999999999999874     456778888888876544 4555544

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.71  E-value=0.00024  Score=66.07  Aligned_cols=24  Identities=46%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +++|+||||+|||+++..++..+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999863

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.71  E-value=0.0005  Score=68.72  Aligned_cols=28  Identities=36%  Similarity=0.613  Sum_probs=24.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      +|-|||+|+||+||||+|+.+|++|...
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~   28 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQE   28 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHh
Confidence            3568999999999999999999998533

>PHA02624 large T antigen; Provisional

Probab=97.69  E-value=0.00014  Score=82.72  Aligned_cols=102  Identities=23%  Similarity=0.247  Sum_probs=61.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS  460 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~  460 (629)
                      .++|+||||||||+++.+|++.|.|.                    ++.+|......-              |-+.....
T Consensus       433 ~il~~GPpnTGKTtf~~sLl~~L~G~--------------------vlsVNsPt~ks~--------------FwL~pl~D  478 (647)
T PHA02624        433 YWLFKGPVNSGKTTLAAALLDLCGGK--------------------SLNVNCPPDKLN--------------FELGCAID  478 (647)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCe--------------------EEEeeCCcchhH--------------HHhhhhhh
Confidence            68899999999999999999997554                    444553222110              11111122


Q ss_pred             CeEEEEEccchhhH-----------HHHHHHHHHHhcc-C------------CCc-EEEEEecCCccchHHHhhcce-Ee
Q 036742          461 NAMIVIYEVDKAAE-----------HIQYLIKWIMDGY-T------------DSC-KLILCCEDDVDIIESVKTHCK-VI  514 (629)
Q Consensus       461 ~kVIIIDEID~Ls~-----------~~q~aLlrilEe~-~------------~~~-~~ILitN~~~~I~~aLrSR~~-~I  514 (629)
                      .++++|||+-.--.           +-...|+..++.. +            -.+ ++|+|+| .+.|+.+++-||. ++
T Consensus       479 ~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~Rf~~~~  557 (647)
T PHA02624        479 QFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKARFAKVL  557 (647)
T ss_pred             ceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHHHHHHhc
Confidence            35899999853211           1124566666644 1            112 3566666 5678889999984 56


Q ss_pred             ecc
Q 036742          515 KVD  517 (629)
Q Consensus       515 ~F~  517 (629)
                      .|.
T Consensus       558 ~F~  560 (647)
T PHA02624        558 DFK  560 (647)
T ss_pred             ccc
Confidence            664

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.66  E-value=0.0041  Score=65.64  Aligned_cols=42  Identities=31%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHcC--CCC-eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          365 HEAQLLKELVVDG--NCP-HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       365 ~~~~~Lk~~L~~g--~~p-~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      ...+.|.+.|...  ..+ .|.|+|+=|+|||++.+.+-+++...
T Consensus         3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen    3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            3456777888754  233 56799999999999999999988544

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=97.65  E-value=5.6e-05  Score=81.18  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=38.4

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEEEEEecCCc-------------cchHHHhhcceE-
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKLILCCEDDV-------------DIIESVKTHCKV-  513 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~ILitN~~~-------------~I~~aLrSR~~~-  513 (629)
                      +.|++|||+|.|..+...+|...||.-.             ..+.|+.+||...             .+.++|.+||-. 
T Consensus       122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi  201 (331)
T PF00493_consen  122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI  201 (331)
T ss_dssp             TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred             CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence            4599999999999999999999999632             4456788888654             256789999943 


Q ss_pred             ee-ccCCCHHH
Q 036742          514 IK-VDPPVTHE  523 (629)
Q Consensus       514 I~-F~ppt~ee  523 (629)
                      +. +..++.+.
T Consensus       202 f~l~D~~d~~~  212 (331)
T PF00493_consen  202 FLLRDKPDEEE  212 (331)
T ss_dssp             ECC--TTT-HH
T ss_pred             EEecccccccc
Confidence            33 45565443

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]

Probab=97.64  E-value=0.011  Score=63.48  Aligned_cols=160  Identities=15%  Similarity=0.132  Sum_probs=112.1

Q ss_pred             eEEEEEccchhh-HHHHHHHHHHHhccC-CCcEEEEEecCCcc---chHHHhhc--ceEeeccCCCHHHHHHHHHHHHHh
Q 036742          462 AMIVIYEVDKAA-EHIQYLIKWIMDGYT-DSCKLILCCEDDVD---IIESVKTH--CKVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       462 kVIIIDEID~Ls-~~~q~aLlrilEe~~-~~~~~ILitN~~~~---I~~aLrSR--~~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                      ++++|...+... .+....+.......+ ....+++.++..+.   +...+..-  +.++.+.+++..++.+++...+.+
T Consensus        76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  155 (334)
T COG1466          76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKE  155 (334)
T ss_pred             eeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHH
Confidence            589999888874 344444444444444 34444444544433   22223222  668999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChHHHHHHH
Q 036742          535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPKRLVMVR  606 (629)
Q Consensus       535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~~L~~ir  606 (629)
                      .|+.+++++++.++...+||++.+.+-++.+.+....   +..+..+++.++        .++++.++.++....+    
T Consensus       156 ~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~---~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~----  228 (334)
T COG1466         156 LGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGD---KEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKAL----  228 (334)
T ss_pred             cCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC---CcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHH----
Confidence            9999999999999999999999999999987765432   122234444444        5667777777655544    


Q ss_pred             HHHHHHHHcCCCHHHHHHHHhc
Q 036742          607 GKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       607 ~kly~lL~~~i~~~~i~~~La~  628 (629)
                      ..+++++..+++|-.|+.-|++
T Consensus       229 ~~l~~L~~~ge~p~~il~~l~~  250 (334)
T COG1466         229 RLLRDLLLEGEEPLKLLAALTR  250 (334)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHH
Confidence            5577888899998888877653

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.63  E-value=0.0011  Score=71.68  Aligned_cols=218  Identities=14%  Similarity=0.133  Sum_probs=112.6

Q ss_pred             CcccccHHHHHHHHHHHHcCC--CC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC---cceEEEe
Q 036742          358 NGFICHRHEAQLLKELVVDGN--CP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS---AHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~--~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS---~~vleIn  431 (629)
                      ..+.+.+..+..|+.++-...  .| +++|+|-.|||||.+++.+.+.++-+..|-    .|++|-...-   .-...+.
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~----n~~ecft~~~lle~IL~~~~   81 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWL----NCVECFTYAILLEKILNKSQ   81 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceee----ehHHhccHHHHHHHHHHHhc
Confidence            567788999999999996443  45 568999999999999999999874443321    1111110000   0000000


Q ss_pred             -cccchhhH-HHHHHHHHHHHHHhcc----CcCCCCeEEEEEccchhhH---HHHHHHHHHHhccC-CCcEEEEEecCCc
Q 036742          432 -VNLQANAK-YALMGLVKEIRDNLAI----TPEVSNAMIVIYEVDKAAE---HIQYLIKWIMDGYT-DSCKLILCCEDDV  501 (629)
Q Consensus       432 -as~~~~~k-~~l~~~lrei~~~~~~----~~~~~~kVIIIDEID~Ls~---~~q~aLlrilEe~~-~~~~~ILitN~~~  501 (629)
                       ++ ..+.. ....+.+..++..+..    .....+-+||+|.+|.+..   .....|.++-+... ..+.||++.....
T Consensus        82 ~~d-~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e  160 (438)
T KOG2543|consen   82 LAD-KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE  160 (438)
T ss_pred             cCC-CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence             11 11110 0001222222222222    1112345999999999953   33444444444222 3455666544332


Q ss_pred             cchH--HHhhcceEeeccCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHH----HHccCCHHHHHHHHHHHHh-cCCCCC
Q 036742          502 DIIE--SVKTHCKVIKVDPPVTHEIMEVLIQIAR-KEDFDLSMTFAAKIA----TKAKQNLRKAIMALEACKA-LNYPFA  573 (629)
Q Consensus       502 ~I~~--aLrSR~~~I~F~ppt~eei~~iL~~i~~-kegl~is~e~L~~Ia----~~s~GDiR~AInlLq~~~~-~~~~~~  573 (629)
                      ..-.  .=-.-..++.|+.|+.+++..|+.+--. +....+-...+..+.    ..| +|++....++..+.. .-++..
T Consensus       161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~c-rd~~eL~~~~~~~wpky~epi~  239 (438)
T KOG2543|consen  161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMAC-RDVNELRSLISLAWPKYCEPIT  239 (438)
T ss_pred             HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhccccc
Confidence            2110  0011235799999999999988865322 211111122333332    334 488888777776543 233455


Q ss_pred             CCCCCchh
Q 036742          574 DDQPIPLG  581 (629)
Q Consensus       574 ~~~~~~~~  581 (629)
                      .+...+.+
T Consensus       240 ~~~i~~~d  247 (438)
T KOG2543|consen  240 KGKIDPTD  247 (438)
T ss_pred             cCCCChhH
Confidence            55555544

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.60  E-value=0.00026  Score=65.70  Aligned_cols=50  Identities=14%  Similarity=0.336  Sum_probs=37.1

Q ss_pred             CcccccHHHHHHHHHHHH----cCC--CCe-EEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          358 NGFICHRHEAQLLKELVV----DGN--CPH-ILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----~g~--~p~-ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      ..|.||.-+++.+..+|+    ...  .|- +-|+||+|||||.+++.||+.|+..+
T Consensus        25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G   81 (127)
T PF06309_consen   25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG   81 (127)
T ss_pred             HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence            668888876666655554    322  233 34999999999999999999987554

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.59  E-value=0.00058  Score=75.22  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             ccCCCCCCcccccHHHHHHHH---HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH-HhCCCCCCCCCCccccccccCCcc
Q 036742          351 KHQPSSLNGFICHRHEAQLLK---ELVVDGNCPHILIKGQSGSGKRALAMALLHE-IYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk---~~L~~g~~p~ILL~GPPGtGKTtLAraLAke-L~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      =|.|..|++    ...+..|.   .|+..+  -|+++.||+|||||++|.+++.. ..-.+.                  
T Consensus       184 G~~P~~~~~----r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG~------------------  239 (449)
T TIGR02688       184 GYEPEGFEA----RQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISGG------------------  239 (449)
T ss_pred             CCCcccCCh----HHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcCC------------------
Confidence            466766653    33333343   455544  38999999999999999998877 211110                  


Q ss_pred             eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----hHHHHHHHHHHHhccC---------CCcEE
Q 036742          427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----AEHIQYLIKWIMDGYT---------DSCKL  493 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----s~~~q~aLlrilEe~~---------~~~~~  493 (629)
                      .  +      ....++.++-....+.+     ....+|+|||+..+    ..+....|...|+...         ..+.+
T Consensus       240 f--~------T~a~Lf~~L~~~~lg~v-----~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~  306 (449)
T TIGR02688       240 T--I------TVAKLFYNISTRQIGLV-----GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASF  306 (449)
T ss_pred             c--C------cHHHHHHHHHHHHHhhh-----ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEE
Confidence            0  0      01112222222222211     22359999999996    3446677887777432         44567


Q ss_pred             EEEecCC
Q 036742          494 ILCCEDD  500 (629)
Q Consensus       494 ILitN~~  500 (629)
                      |+..|-.
T Consensus       307 vfvGNi~  313 (449)
T TIGR02688       307 VFLGNVP  313 (449)
T ss_pred             EEEcccC
Confidence            8877653

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=97.56  E-value=0.001  Score=75.45  Aligned_cols=147  Identities=13%  Similarity=0.086  Sum_probs=80.9

Q ss_pred             CCcccccHHHHHHHHHHHHcCC------------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc-C
Q 036742          357 LNGFICHRHEAQLLKELVVDGN------------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA-S  423 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~------------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~-s  423 (629)
                      |-.|.||+.++.-|.=.|-.|-            -.||+|.|.||+||+-+.++++.-+ .-..|.       +-... .
T Consensus       344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs-PR~vYt-------sGkaSSa  415 (764)
T KOG0480|consen  344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-PRSVYT-------SGKASSA  415 (764)
T ss_pred             CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC-CcceEe-------cCccccc
Confidence            4568899998876665554221            1289999999999999999988653 111100       00000 0


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CC
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DS  490 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~  490 (629)
                      .+..+-+--+...++          +.-.+...--..+.|..|||+|.|....|.+|...||.-.             ..
T Consensus       416 AGLTaaVvkD~esgd----------f~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnAR  485 (764)
T KOG0480|consen  416 AGLTAAVVKDEESGD----------FTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNAR  485 (764)
T ss_pred             ccceEEEEecCCCCc----------eeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecch
Confidence            011111111111111          0000000111234599999999999988999999998643             12


Q ss_pred             cEEEEEecCCc-------------cchHHHhhcce--EeeccCCCH
Q 036742          491 CKLILCCEDDV-------------DIIESVKTHCK--VIKVDPPVT  521 (629)
Q Consensus       491 ~~~ILitN~~~-------------~I~~aLrSR~~--~I~F~ppt~  521 (629)
                      +.||.++|...             .+..+|.|||-  .|-+..++.
T Consensus       486 tSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE  531 (764)
T KOG0480|consen  486 TSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE  531 (764)
T ss_pred             hhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch
Confidence            23455555421             14678899983  233444443

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=97.53  E-value=0.00065  Score=75.26  Aligned_cols=170  Identities=16%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             CcccccHHHHHHHHHHHHcCCC---------C---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          358 NGFICHRHEAQLLKELVVDGNC---------P---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~---------p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      -+|.|++++++.|.-+|..|.-         +   +|+|.|.||+.|+-|.+.|.+.. .-..+-.-        -.+|+
T Consensus       342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla-pRgvYTTG--------rGSSG  412 (721)
T KOG0482|consen  342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA-PRGVYTTG--------RGSSG  412 (721)
T ss_pred             hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC-cccceecC--------CCCCc
Confidence            5799999999999888864421         1   69999999999999999998853 11110000        00000


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHH-HHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC------------
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIR-DNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------  488 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~-~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------  488 (629)
                        +-+.+.           ++++-+ ....+.+    -..+.|..|||+|.|.+...-++..+||.-+            
T Consensus       413 --VGLTAA-----------VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtL  479 (721)
T KOG0482|consen  413 --VGLTAA-----------VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTL  479 (721)
T ss_pred             --cccchh-----------hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccch
Confidence              111110           011100 0000000    0123499999999998888888888887533            


Q ss_pred             -CCcEEEEEecCCc-------------cchHHHhhcce-------------------------------EeeccCCCHHH
Q 036742          489 -DSCKLILCCEDDV-------------DIIESVKTHCK-------------------------------VIKVDPPVTHE  523 (629)
Q Consensus       489 -~~~~~ILitN~~~-------------~I~~aLrSR~~-------------------------------~I~F~ppt~ee  523 (629)
                       ..+-|+.++|..+             .+..+|.|||-                               ...|.|++.+-
T Consensus       480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~  559 (721)
T KOG0482|consen  480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL  559 (721)
T ss_pred             hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence             2233455555421             15788888872                               13466666766


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742          524 IMEVLIQIARKEDFDLSMTFAAKIATK  550 (629)
Q Consensus       524 i~~iL~~i~~kegl~is~e~L~~Ia~~  550 (629)
                      ++.++. .|+...-.++++..++|+..
T Consensus       560 mR~yI~-~ak~~~P~vp~~l~dyi~~A  585 (721)
T KOG0482|consen  560 MRRYIS-LAKRKNPVVPEALADYITGA  585 (721)
T ss_pred             HHHHHH-HHhhcCCCCCHHHHHHHHHH
Confidence            666664 34444455677777766543

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=97.50  E-value=0.0018  Score=68.94  Aligned_cols=155  Identities=23%  Similarity=0.290  Sum_probs=85.1

Q ss_pred             ccccHHHHHHHHHHH----HcCCCCeEEEEcCCCCcHHHHHHHHHHHH--hCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          360 FICHRHEAQLLKELV----VDGNCPHILIKGQSGSGKRALAMALLHEI--YGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L----~~g~~p~ILL~GPPGtGKTtLAraLAkeL--~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      +.|..+....|.+|+    ..|....+++.||.|+|||.+.-......  +++.+                 .++.+|..
T Consensus        26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~-----------------l~v~Lng~   88 (408)
T KOG2228|consen   26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF-----------------LLVRLNGE   88 (408)
T ss_pred             eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE-----------------EEEEECcc
Confidence            456655555555555    46778889999999999999776555431  23322                 25566664


Q ss_pred             cchhhHHHHHHHHHHHHHHh-------cc--------------CcC-CCCe-EEEEEccchhhH-HHHHHHHHHHhccC-
Q 036742          434 LQANAKYALMGLVKEIRDNL-------AI--------------TPE-VSNA-MIVIYEVDKAAE-HIQYLIKWIMDGYT-  488 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~-------~~--------------~~~-~~~k-VIIIDEID~Ls~-~~q~aLlrilEe~~-  488 (629)
                      ... ++.++.++.+.+....       ..              ... .+.+ |+|+||+|...+ .-|-.|+.++|... 
T Consensus        89 ~~~-dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs  167 (408)
T KOG2228|consen   89 LQT-DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS  167 (408)
T ss_pred             chh-hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh
Confidence            333 2323333333222110       00              001 1222 666679998843 44556666666332 


Q ss_pred             CCcE--EEEEecCC---ccchHHHhhcce---EeeccCCCHHHHHHHHHHHH
Q 036742          489 DSCK--LILCCEDD---VDIIESVKTHCK---VIKVDPPVTHEIMEVLIQIA  532 (629)
Q Consensus       489 ~~~~--~ILitN~~---~~I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~  532 (629)
                      ...+  +|..|...   +.+-...+||+-   ++-++..+-.++..+++...
T Consensus       168 ~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  168 ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence            2333  33333333   235677888883   34445666778877777654

>PRK13695 putative NTPase; Provisional

Probab=97.49  E-value=0.0012  Score=63.84  Aligned_cols=67  Identities=13%  Similarity=0.250  Sum_probs=42.6

Q ss_pred             CCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCCc--cchHHHhhcc--eEeeccCCCHHHHHHHHH
Q 036742          460 SNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDV--DIIESVKTHC--KVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       460 ~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~~--~I~~aLrSR~--~~I~F~ppt~eei~~iL~  529 (629)
                      ...+|+|||+..+   .....+.+..+++   ....+|++++...  .+.+.|..+.  .++.+.+-+.+++-..+.
T Consensus        96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~  169 (174)
T PRK13695         96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEIL  169 (174)
T ss_pred             CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHH
Confidence            3459999997554   4445566666664   4568888888743  2456666664  567776666665554443

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=97.48  E-value=0.00027  Score=73.68  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=68.1

Q ss_pred             HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742          368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK  447 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr  447 (629)
                      +.|......... .|||.||.|.||+.||+.|...-...              ..-++.++|+||...+|+. ....++.
T Consensus       198 eqierva~rsr~-p~ll~gptgagksflarriyelk~ar--------------hq~sg~fvevncatlrgd~-amsalfg  261 (531)
T COG4650         198 EQIERVAIRSRA-PILLNGPTGAGKSFLARRIYELKQAR--------------HQFSGAFVEVNCATLRGDT-AMSALFG  261 (531)
T ss_pred             HHHHHHHhhccC-CeEeecCCCcchhHHHHHHHHHHHHH--------------HhcCCceEEEeeeeecCch-HHHHHHh
Confidence            344443333333 49999999999999999987542111              1124558999997766653 2333444


Q ss_pred             HHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhc
Q 036742          448 EIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDG  486 (629)
Q Consensus       448 ei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe  486 (629)
                      .+...|....        ...+.++|+|||..|..+.|..|++.+|+
T Consensus       262 hvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaiee  308 (531)
T COG4650         262 HVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEE  308 (531)
T ss_pred             hhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHh
Confidence            4433333222        23456999999999999999999999985

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.46  E-value=0.0071  Score=74.63  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHH-----HHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR-----DNL  453 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~-----~~~  453 (629)
                      ...+||.|.||+|||+++.++|+.. |..                   .+.||-++...    +.+++..-.     ..|
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~t-G~k-------------------liRINLSeQTd----L~DLfGsd~Pve~~Gef 1598 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKT-GKK-------------------LIRINLSEQTD----LCDLFGSDLPVEEGGEF 1598 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHh-cCc-------------------eEEeeccccch----HHHHhCCCCCcccCcee
Confidence            3479999999999999999999996 554                   35555543221    111111000     000


Q ss_pred             ccC------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc--------------CCCcEEEEEecCCc------cchHHH
Q 036742          454 AIT------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--------------TDSCKLILCCEDDV------DIIESV  507 (629)
Q Consensus       454 ~~~------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--------------~~~~~~ILitN~~~------~I~~aL  507 (629)
                      ...      .-..+.-|++||+.-.+..+.+-|...++.-              ..+.+++.+-|..+      .++..+
T Consensus      1599 ~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271        1599 RWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred             EecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence            000      0012348999999998888877777776521              13334444444322      278999


Q ss_pred             hhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 036742          508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT  549 (629)
Q Consensus       508 rSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~  549 (629)
                      ..|+.++.+..++.+++..|+....    ..+.++....|+.
T Consensus      1679 ~nRFsvV~~d~lt~dDi~~Ia~~~y----p~v~~d~~~kiik 1716 (4600)
T COG5271        1679 LNRFSVVKMDGLTTDDITHIANKMY----PQVNEDWRLKIIK 1716 (4600)
T ss_pred             hhhhheEEecccccchHHHHHHhhC----CccChHHHHHHHH
Confidence            9999999999999999887775432    3455665555543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.42  E-value=0.00018  Score=81.78  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=42.7

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +-.-|+|+.|++++++.|.+.++      ...-+.++|.||||+|||+||++||+.+..
T Consensus        71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455         71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            33468899999999988888873      222346889999999999999999998743

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.40  E-value=0.0033  Score=65.75  Aligned_cols=153  Identities=12%  Similarity=0.206  Sum_probs=83.2

Q ss_pred             cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      +++.-+++++.+..+.+  .....|+||.|..|+||+++++..|.- .+..                   ++++......
T Consensus         9 ~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i-~~~~-------------------~~~i~~~~~y   68 (268)
T PF12780_consen    9 NLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFI-CGYE-------------------VFQIEITKGY   68 (268)
T ss_dssp             -----HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHH-TTEE-------------------EE-TTTSTTT
T ss_pred             ceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHH-hccc-------------------eEEEEeeCCc
Confidence            45556777766665554  233458999999999999999966654 3433                   3444443333


Q ss_pred             hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH-------------------------HHHHH----------
Q 036742          437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI-------------------------QYLIK----------  481 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~-------------------------q~aLl----------  481 (629)
                      +.+ ...+.++.+....+..  +...|++|+|.+-..+..                         .+.++          
T Consensus        69 ~~~-~f~~dLk~~~~~ag~~--~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~  145 (268)
T PF12780_consen   69 SIK-DFKEDLKKALQKAGIK--GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD  145 (268)
T ss_dssp             HHH-HHHHHHHHHHHHHHCS---S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred             CHH-HHHHHHHHHHHHHhcc--CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence            322 2233444444433332  334577777754331111                         11111          


Q ss_pred             -------HHHhccCCCcEEEEEecCCcc-------chHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742          482 -------WIMDGYTDSCKLILCCEDDVD-------IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       482 -------rilEe~~~~~~~ILitN~~~~-------I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                             -+++.-..+..||++-.....       ..|+|.++|.+.-|.+.+.+.+..+-......
T Consensus       146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~  212 (268)
T PF12780_consen  146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD  212 (268)
T ss_dssp             SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred             chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence                   111222355677877654332       25788889999999999998888877766543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.39  E-value=0.0009  Score=66.92  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS  460 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~  460 (629)
                      .++|.|+.|+|||+..+.|+.+.+....                      ....  . +    +.+..+...        
T Consensus        54 ~lvl~G~QG~GKStf~~~L~~~~~~d~~----------------------~~~~--~-k----d~~~~l~~~--------   96 (198)
T PF05272_consen   54 VLVLVGKQGIGKSTFFRKLGPEYFSDSI----------------------NDFD--D-K----DFLEQLQGK--------   96 (198)
T ss_pred             eeeEecCCcccHHHHHHHHhHHhccCcc----------------------ccCC--C-c----HHHHHHHHh--------
Confidence            4779999999999999999777433321                      0000  0 1    111122211        


Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhcc---------------CCCcEEEEEecCCccc-hHHHhhcceEeeccC
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGY---------------TDSCKLILCCEDDVDI-IESVKTHCKVIKVDP  518 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~---------------~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~p  518 (629)
                       -||.|||++.+.....+.|..++...               +..+.||.+||..+-| +++=-+|+.++.+..
T Consensus        97 -~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~  169 (198)
T PF05272_consen   97 -WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK  169 (198)
T ss_pred             -HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence             27999999999888888888776432               2344578889987754 566778998888875

>PRK04296 thymidine kinase; Provisional

Probab=97.37  E-value=0.00058  Score=67.49  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      -.|++||+|+||||++..++..+.+
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~   28 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEE   28 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999999999987643

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.35  E-value=0.001  Score=66.84  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+.+|||||+.++++...   ..++.....++.+|++.+.
T Consensus       119 ~~~~iIvDEaQN~t~~~~---k~ilTR~g~~skii~~GD~  155 (205)
T PF02562_consen  119 DNAFIIVDEAQNLTPEEL---KMILTRIGEGSKIIITGDP  155 (205)
T ss_dssp             -SEEEEE-SGGG--HHHH---HHHHTTB-TT-EEEEEE--
T ss_pred             cceEEEEecccCCCHHHH---HHHHcccCCCcEEEEecCc
Confidence            356999999999987554   3445555678999998764

; GO: 0005524 ATP binding; PDB: 3B85_A.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.33  E-value=0.0011  Score=69.26  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=29.0

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |..++..+.+.+++|.||+|+||||++++++..+.
T Consensus       102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            44445566677999999999999999999998863

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=97.31  E-value=0.017  Score=63.93  Aligned_cols=91  Identities=13%  Similarity=0.223  Sum_probs=62.2

Q ss_pred             EEEEEccchhh--------HHHHHHHHHHHhccC----CCcEEEEEecCC------ccc--hHHHhhcc-----------
Q 036742          463 MIVIYEVDKAA--------EHIQYLIKWIMDGYT----DSCKLILCCEDD------VDI--IESVKTHC-----------  511 (629)
Q Consensus       463 VIIIDEID~Ls--------~~~q~aLlrilEe~~----~~~~~ILitN~~------~~I--~~aLrSR~-----------  511 (629)
                      ||+|||++.+.        ....+.|+.+++...    .+..|++++...      .-+  .++|.+|+           
T Consensus       242 lI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~  321 (416)
T PF10923_consen  242 LILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFD  321 (416)
T ss_pred             EEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccccc
Confidence            99999999882        245678888887543    344566665431      113  57888875           


Q ss_pred             ----eEeeccCCCHHHHHHHHHHHHH------hcCCCCCHHHHHHHHHHccC
Q 036742          512 ----KVIKVDPPVTHEIMEVLIQIAR------KEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       512 ----~~I~F~ppt~eei~~iL~~i~~------kegl~is~e~L~~Ia~~s~G  553 (629)
                          .+|.+.+++.+++..++.++..      .....++++.+..+++.+.|
T Consensus       322 n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~  373 (416)
T PF10923_consen  322 NLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAG  373 (416)
T ss_pred             CccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Confidence                2588999999999988877642      12246788888888766543

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.30  E-value=0.032  Score=65.73  Aligned_cols=174  Identities=11%  Similarity=0.213  Sum_probs=106.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      +|.-....+-.+.    |...|..+ ..+-++|+-|.|.||||++-.++..+ ....                 .+.-++
T Consensus        14 ~P~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~-----------------~v~Wls   71 (894)
T COG2909          14 RPVRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA-ADGA-----------------AVAWLS   71 (894)
T ss_pred             CCCCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc-Cccc-----------------ceeEee
Confidence            4555565555555    44444443 56789999999999999999888632 2211                 133333


Q ss_pred             cccch-----hhHHHH--------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHH
Q 036742          432 VNLQA-----NAKYAL--------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYL  479 (629)
Q Consensus       432 as~~~-----~~k~~l--------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~a  479 (629)
                      .+...     ...+++                          ..++..+....  ....++..+||||.+.+.. .....
T Consensus        72 lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~El--a~~~~pl~LVlDDyHli~~~~l~~~  149 (894)
T COG2909          72 LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNEL--ASYEGPLYLVLDDYHLISDPALHEA  149 (894)
T ss_pred             cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHH--HhhcCceEEEeccccccCcccHHHH
Confidence            32111     111110                          11111111111  1112335999999999954 56778


Q ss_pred             HHHHHhccCCCcEEEEEecCCccc-hHHHhhcceEeecc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          480 IKWIMDGYTDSCKLILCCEDDVDI-IESVKTHCKVIKVD----PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       480 LlrilEe~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~----ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      |..+++..+.+..+|+++.....+ ...++-|-..+++.    .++.+|..+.+..   ..+..++...++.|...+.|
T Consensus       150 l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teG  225 (894)
T COG2909         150 LRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEG  225 (894)
T ss_pred             HHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhccc
Confidence            888888888999999998765553 44444444333332    3567787777763   34578899999999999888

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.27  E-value=0.0011  Score=71.59  Aligned_cols=23  Identities=48%  Similarity=0.772  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+++.|.||||||.||..+++.+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            47899999999999999999998

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.0022  Score=76.26  Aligned_cols=180  Identities=13%  Similarity=0.129  Sum_probs=106.6

Q ss_pred             CCccccc-HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc--eEEEec-
Q 036742          357 LNGFICH-RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH--HVELNV-  432 (629)
Q Consensus       357 fddIiG~-e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~--vleIna-  432 (629)
                      ++-++|. ++.++.+.+.|......+-+|.|.||+|||.++.-+|..+...++...          .....  ++.+-. 
T Consensus       185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~----------l~~~~l~~l~~g~l  254 (898)
T KOG1051|consen  185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPET----------LKDKKLIALDFGSL  254 (898)
T ss_pred             CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcc----------ccccceEEEEhhhc
Confidence            5677786 776777777776666678999999999999999999998754443220          01111  122211 


Q ss_pred             ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEEEec-CCcc-
Q 036742          433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLILCCE-DDVD-  502 (629)
Q Consensus       433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ILitN-~~~~-  502 (629)
                      ..+......++..++++.+....  .+.+-||||||++-+..        ++.+.|...+..  ....+|-+|. +.+. 
T Consensus       255 ~aGa~~rge~E~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~k  330 (898)
T KOG1051|consen  255 VAGAKRRGEFEERLKELLKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETYRK  330 (898)
T ss_pred             ccCcccchHHHHHHHHHHHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHHHH
Confidence            11111122345566666554333  33456999999999832        233333333322  2255565443 2221 


Q ss_pred             ---chHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHH
Q 036742          503 ---IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATK  550 (629)
Q Consensus       503 ---I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~  550 (629)
                         -+++|.+|+..+.++-|+.++...+|.....+    .|..+.++.+...+..
T Consensus       331 ~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~  385 (898)
T KOG1051|consen  331 CIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL  385 (898)
T ss_pred             HHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence               37899999999999999987766666655443    3445555544444433

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.23  E-value=0.0023  Score=56.89  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ++++++||+|+|||+++..++.++..
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~~   26 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLD   26 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHHh
Confidence            36899999999999999999988753

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.22  E-value=0.0029  Score=74.80  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL  442 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l  442 (629)
                      .++..+.+..++..   +.++|.|+|||||||+++++...+.....                ...+.+.+...+..+ .+
T Consensus       325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~----------------~~~v~l~ApTg~AA~-~L  384 (720)
T TIGR01448       325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGG----------------LLPVGLAAPTGRAAK-RL  384 (720)
T ss_pred             CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCC----------------CceEEEEeCchHHHH-HH
Confidence            45555556555433   36899999999999999999887643210                002333332221111 11


Q ss_pred             HH-------HHHHHHHHhcc-------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          443 MG-------LVKEIRDNLAI-------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       443 ~~-------~lrei~~~~~~-------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+       .+..+......       .......+|||||+..+.......|++.+   ...+++||+...
T Consensus       385 ~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~  452 (720)
T TIGR01448       385 GEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT  452 (720)
T ss_pred             HHhcCCccccHHHHhhccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence            11       01111110000       00123459999999999887776666644   467889988754

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=97.17  E-value=0.0068  Score=57.36  Aligned_cols=40  Identities=8%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+.. .....+..++........+++.+..+.
T Consensus       131 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~  171 (201)
T smart00487      131 DLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP  171 (201)
T ss_pred             CEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCc
Confidence            3899999999986 444455555554444555555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.17  E-value=0.0096  Score=71.87  Aligned_cols=205  Identities=14%  Similarity=0.100  Sum_probs=109.0

Q ss_pred             cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhH
Q 036742          361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK  439 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k  439 (629)
                      +|++..++.+.+.|.......+=|||-.|+||||||+.+-+... -...+.               .++-+..+......
T Consensus       161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd---------------~~iWV~VSk~f~~~  225 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD---------------GVIWVVVSKEFTTR  225 (889)
T ss_pred             ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCc---------------eEEEEEEcccccHH
Confidence            99999999999999876666677999999999999998887642 111100               02222223222222


Q ss_pred             HHHHHHHHHHHH---------------HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          440 YALMGLVKEIRD---------------NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       440 ~~l~~~lrei~~---------------~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      .+..+++..+..               .....-...+.+|++|||=.=.  ....+...+-.-..++.+++||....--.
T Consensus       226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~  303 (889)
T KOG4658|consen  226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCG  303 (889)
T ss_pred             hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence            122222221100               0000011233499999873321  11111111111124488999986432211


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL---SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG  581 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~i---s~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~  581 (629)
                      .+ ..+...++..-++.++.=..+.+++......-   -++....++..|.| +--|++.|-.+-+.       ..+...
T Consensus       304 ~~-m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~G-LPLAl~viG~~ma~-------K~t~~e  374 (889)
T KOG4658|consen  304 RA-MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGG-LPLALNVLGGLLAC-------KKTVQE  374 (889)
T ss_pred             cc-ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCC-hHHHHHHHHHHhcC-------CCcHHH
Confidence            11 11244566777777777777776653321211   25667778888887 66677777543322       222345


Q ss_pred             HHHHHHHHHH
Q 036742          582 WEEVLIELAA  591 (629)
Q Consensus       582 ~ek~l~ei~~  591 (629)
                      |+.++..+..
T Consensus       375 W~~~~~~l~s  384 (889)
T KOG4658|consen  375 WRRALNVLKS  384 (889)
T ss_pred             HHHHHccccc
Confidence            6666654443

>PTZ00202 tuzin; Provisional

Probab=97.15  E-value=0.038  Score=61.47  Aligned_cols=51  Identities=16%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCC--C-CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGN--C-PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~--~-p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|....+++|.+.....|...|....  . +.++|.||+|||||++++.++..+
T Consensus       257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l  310 (550)
T PTZ00202        257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE  310 (550)
T ss_pred             CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence            56678999999999999999997432  2 356799999999999999999775

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.13  E-value=0.0062  Score=65.41  Aligned_cols=117  Identities=15%  Similarity=0.276  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP  457 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~  457 (629)
                      ...+++|||+-|+|||.|.-.+...+-+...  .               -+....        ...++.+++........
T Consensus        64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k--~---------------R~HFh~--------FM~~vH~~l~~l~g~~d  118 (367)
T COG1485          64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERK--R---------------RLHFHR--------FMARVHQRLHTLQGQTD  118 (367)
T ss_pred             CCceEEEECCCCccHHHHHHHHHhhCCcccc--c---------------cccHHH--------HHHHHHHHHHHHcCCCC
Confidence            3458999999999999999998887643321  0               000000        00111111111100000


Q ss_pred             ---------CCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc-----------c---hHHHhhcceE
Q 036742          458 ---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD-----------I---IESVKTHCKV  513 (629)
Q Consensus       458 ---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~-----------I---~~aLrSR~~~  513 (629)
                               .....||+|||+.--.....-.|.++++. +..++.+|.|+|....           +   +..|.++|.+
T Consensus       119 pl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v  198 (367)
T COG1485         119 PLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEV  198 (367)
T ss_pred             ccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEE
Confidence                     01234999999876655555556666653 4567788888887432           2   3456788887


Q ss_pred             eeccCC
Q 036742          514 IKVDPP  519 (629)
Q Consensus       514 I~F~pp  519 (629)
                      +.+..+
T Consensus       199 ~~vD~~  204 (367)
T COG1485         199 VNVDGP  204 (367)
T ss_pred             EEecCC
Confidence            776655

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.05  E-value=0.0045  Score=59.79  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +|++||||||||+++..++.+.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999988765

A related protein is found in archaea.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.02  E-value=0.0037  Score=64.14  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          382 ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |+|+|+||+||||+|+.+++.+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.00  E-value=0.00055  Score=61.60  Aligned_cols=22  Identities=45%  Similarity=0.729  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||||+||||+|+.||..+
T Consensus         2 I~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999986

...

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.99  E-value=0.0026  Score=69.19  Aligned_cols=43  Identities=19%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |..+...+.+.+......++++.||.|||||++.++|...+..
T Consensus         6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen    6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            3445555655565545557899999999999999999988743

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.99  E-value=0.0034  Score=64.94  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ...++|.||+||||||+++.+++.+.
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            34689999999999999999998864

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=96.99  E-value=0.0034  Score=68.81  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .-.+|.||||+|||+|++.|++.+..
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Confidence            35899999999999999999998743

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.98  E-value=0.02  Score=59.08  Aligned_cols=68  Identities=3%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                      ..+|||||+..- .--...+..++... .-++-+|++|.....+++.+|.-+..+-+-..+..++..++.
T Consensus        99 ~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~  167 (241)
T PF04665_consen   99 RFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR  167 (241)
T ss_pred             CeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence            459999998541 11223344444422 244668889988888999998877654433456666544443

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=96.97  E-value=0.002  Score=68.26  Aligned_cols=131  Identities=17%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             Ccccc-cHHHHHHHHHHHH---cCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          358 NGFIC-HRHEAQLLKELVV---DGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       358 ddIiG-~e~~~~~Lk~~L~---~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +++.+ .++.++.|++++-   .+..+   .++|+|+.|+||++++..|... +|...                   +.+
T Consensus        48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l-~G~~~-------------------~~~  107 (304)
T TIGR01613        48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNL-LGDYA-------------------TTA  107 (304)
T ss_pred             HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHH-hChhh-------------------ccC
Confidence            44443 4557778888874   22222   5789999999999999977655 46532                   000


Q ss_pred             ecccchhhHHHHHHHHHHHHH-HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc--------------cCCCcEEEE
Q 036742          431 NVNLQANAKYALMGLVKEIRD-NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG--------------YTDSCKLIL  495 (629)
Q Consensus       431 nas~~~~~k~~l~~~lrei~~-~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe--------------~~~~~~~IL  495 (629)
                      .++.          .+.+.-. .+....-....++++||++.-.....+.|..+...              +...+.+|+
T Consensus       108 ~~~~----------~~~~~~~~~f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~  177 (304)
T TIGR01613       108 VASL----------KMNEFQEHRFGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQ  177 (304)
T ss_pred             Ccch----------hhhhccCCCchhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEE
Confidence            0000          0000000 11111122345899999975322223445444421              123456899


Q ss_pred             EecCCccc---hHHHhhcceEeeccC
Q 036742          496 CCEDDVDI---IESVKTHCKVIKVDP  518 (629)
Q Consensus       496 itN~~~~I---~~aLrSR~~~I~F~p  518 (629)
                      +||....+   ..++.+|+.+|.|..
T Consensus       178 ~tN~~P~~~~~~~a~~RR~~vi~f~~  203 (304)
T TIGR01613       178 STNHLPRIRGFDGGIKRRLRIIPFTK  203 (304)
T ss_pred             EcCCCCccCCCChhheeeEEEEeccC
Confidence            99997775   578999999999863

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>PRK14528 adenylate kinase; Provisional

Probab=96.96  E-value=0.014  Score=57.39  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.++|.||||+||||+|+.+++.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999885

>PRK08118 topology modulation protein; Reviewed

Probab=96.95  E-value=0.0035  Score=60.82  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..|++.||||+||||+|+.|++.+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999999973

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.94  E-value=0.016  Score=64.43  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++..||..+.
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988763

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.93  E-value=0.01  Score=65.23  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||+|+||||++..+|..+.
T Consensus       176 vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        176 VFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998763

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=96.91  E-value=0.0045  Score=67.31  Aligned_cols=115  Identities=15%  Similarity=0.239  Sum_probs=66.1

Q ss_pred             HHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE-EecccchhhHHHHHHH
Q 036742          368 QLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGL  445 (629)
Q Consensus       368 ~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle-Inas~~~~~k~~l~~~  445 (629)
                      ..|+.+|+.-+.. .|+|+|||+|||+.++..|.+-|.|.                    |+- +|...           
T Consensus       250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk--------------------ViSf~Ns~S-----------  298 (432)
T PF00519_consen  250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK--------------------VISFVNSKS-----------  298 (432)
T ss_dssp             HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE--------------------EE-GGGTTS-----------
T ss_pred             HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCE--------------------EEEecCCCC-----------
Confidence            4556666643333 58899999999999999999988554                    221 11110           


Q ss_pred             HHHHHHHhccCcCCCCeEEEEEccchhhHHHH-HHHHHHHhccC-------------CCcEEEEEecCCcc---chHHHh
Q 036742          446 VKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQ-YLIKWIMDGYT-------------DSCKLILCCEDDVD---IIESVK  508 (629)
Q Consensus       446 lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q-~aLlrilEe~~-------------~~~~~ILitN~~~~---I~~aLr  508 (629)
                            .|=+.+-...+|.+|||+-.---.-. ..|+..++..+             .-.++++|+|..-.   -..-|.
T Consensus       299 ------hFWLqPL~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLh  372 (432)
T PF00519_consen  299 ------HFWLQPLADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLH  372 (432)
T ss_dssp             ------CGGGGGGCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHC
T ss_pred             ------cccccchhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhh
Confidence                  11122223346899999866533322 34566666432             11247778876433   356789


Q ss_pred             hcceEeeccCC
Q 036742          509 THCKVIKVDPP  519 (629)
Q Consensus       509 SR~~~I~F~pp  519 (629)
                      ||+..++|+.+
T Consensus       373 SRi~~f~F~n~  383 (432)
T PF00519_consen  373 SRITCFEFPNP  383 (432)
T ss_dssp             TTEEEEE--S-
T ss_pred             heEEEEEcCCc
Confidence            99999999643

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.90  E-value=0.011  Score=61.74  Aligned_cols=50  Identities=22%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.+++++...+..++.|+.++... ...++|.||+|+||||+++++...+.
T Consensus        56 ~~~l~~lg~~~~~~~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          56 ILDLEKLGLKPENLEIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCCHHHcCCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            446778877788888888888643 23689999999999999999988874

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.89  E-value=0.0073  Score=59.92  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||+|||+++..++....
T Consensus        14 i~~i~G~~GsGKT~l~~~~~~~~~   37 (209)
T TIGR02237        14 ITQIYGPPGSGKTNICMILAVNAA   37 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999997753

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.87  E-value=0.032  Score=60.22  Aligned_cols=43  Identities=26%  Similarity=0.487  Sum_probs=33.7

Q ss_pred             ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++...+..+.|..+++.+.  +||++|++|+||||++++++.++.
T Consensus       143 ~~~~~~~~~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        143 LLAEKKIKEFLEHAVISKK--NIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             hhhhHHHHHHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhCC
Confidence            3445556667777777543  799999999999999999998863

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.84  E-value=0.0017  Score=66.01  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+||||+||+||||+|+.++.
T Consensus        14 ~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        14 MYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             EEEEECCCCCCHHHHHHhcCC
Confidence            589999999999999998874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.83  E-value=0.058  Score=57.59  Aligned_cols=48  Identities=17%  Similarity=-0.000  Sum_probs=38.0

Q ss_pred             EeeccCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHH
Q 036742          513 VIKVDPPVTHEIMEVLIQIARKEDFD---LSMTFAAKIATKAKQNLRKAIM  560 (629)
Q Consensus       513 ~I~F~ppt~eei~~iL~~i~~kegl~---is~e~L~~Ia~~s~GDiR~AIn  560 (629)
                      .|.++.++.+|++.++.......-+.   .++.+.+.+.-.++|++|....
T Consensus       258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k  308 (309)
T PF10236_consen  258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK  308 (309)
T ss_pred             eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence            78999999999999998887655443   3566777788888999998653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.80  E-value=0.0099  Score=59.32  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..++|.||.|+||||+++.|+..+
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            468899999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=96.80  E-value=0.012  Score=68.43  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=27.9

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .||||||+-.+.-.....|++.+   +..+++||.....
T Consensus       267 dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~  302 (615)
T PRK10875        267 DVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRD  302 (615)
T ss_pred             CeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchh
Confidence            39999999999877766666654   4678999987653

>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=96.79  E-value=0.0064  Score=76.83  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=90.9

Q ss_pred             ccccHHHHHHHH---HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          360 FICHRHEAQLLK---ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       360 IiG~e~~~~~Lk---~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      ++--+.+...+.   .+...|..| +||-||.|||||.++..+|+.+ |..+                   ++++-....
T Consensus       419 ~i~T~~vq~~la~~~~a~~~~~~p-illqG~tssGKtsii~~la~~~-g~~~-------------------vrinnheht  477 (1856)
T KOG1808|consen  419 YIITPRVQKNLADLARAISSGKFP-ILLQGPTSSGKTSIIKELARAT-GKNI-------------------VRINNHEHT  477 (1856)
T ss_pred             eeccHHHHHHHHHHHHHHhcCCCC-eEEecCcCcCchhHHHHHHHHh-ccCc-------------------eehhccccc
Confidence            344444444444   444455554 9999999999999999999996 5542                   444432221


Q ss_pred             hhHHHHHHHHHHHHHHhccCc--------------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----CCcE-----
Q 036742          437 NAKYALMGLVKEIRDNLAITP--------------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----DSCK-----  492 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~--------------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----~~~~-----  492 (629)
                      ..        .+.++.+....              ...+..+|+||+.....+..++|.++++.-.     .+++     
T Consensus       478 d~--------qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h  549 (1856)
T KOG1808|consen  478 DL--------QEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAH  549 (1856)
T ss_pred             hH--------HHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccC
Confidence            11        11111111111              1124599999999999999999999987511     1222     


Q ss_pred             ----EEEEecCC------ccchHHHhhcceEeeccCCCHHHHHHHHHHHH
Q 036742          493 ----LILCCEDD------VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA  532 (629)
Q Consensus       493 ----~ILitN~~------~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~  532 (629)
                          ++.+=|.+      ..+..+|++|+..++|...+.+++..++...|
T Consensus       550 ~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~  599 (1856)
T KOG1808|consen  550 PEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEHRC  599 (1856)
T ss_pred             cchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence                22233333      12567888999999999999988888887654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.77  E-value=0.014  Score=56.59  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||||+||||+|+.||..+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999986

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.76  E-value=0.0035  Score=61.88  Aligned_cols=38  Identities=16%  Similarity=0.406  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +...+.+..++....  -.++.||||||||+++..++..+
T Consensus         4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen    4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence            344455555555432  38899999999998877777776

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=96.76  E-value=0.0024  Score=63.26  Aligned_cols=52  Identities=15%  Similarity=0.176  Sum_probs=32.5

Q ss_pred             CCeEEEEEccchhhHH-------HHHHHHHHHh-ccCCCcEEEEEecCCccchHHHhhcce
Q 036742          460 SNAMIVIYEVDKAAEH-------IQYLIKWIMD-GYTDSCKLILCCEDDVDIIESVKTHCK  512 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~-------~q~aLlrilE-e~~~~~~~ILitN~~~~I~~aLrSR~~  512 (629)
                      .+.||||||++.+.+.       ....+ ..+. --..+..|||+|..+..|+..++..+.
T Consensus        79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~~id~~ir~lve  138 (193)
T PF05707_consen   79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPSQIDKFIRDLVE  138 (193)
T ss_dssp             TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GGGB-HHHHCCEE
T ss_pred             CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHh
Confidence            4569999999988321       12333 3333 233567899999999999999987663

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.76  E-value=0.00095  Score=61.66  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|+||||+||||+|+.+++.+
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            7899999999999999999885

...

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.76  E-value=0.0058  Score=57.99  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+||||++++|+..+
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999865

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=96.75  E-value=0.016  Score=70.46  Aligned_cols=116  Identities=12%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA  441 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~  441 (629)
                      ..++..+.+..++....  .++|.|++||||||+.+++...+...+.                 .++-+.+. ..-...+
T Consensus       347 Ls~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G~-----------------~V~~~ApT-GkAA~~L  406 (988)
T PRK13889        347 LSGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAGY-----------------EVRGAALS-GIAAENL  406 (988)
T ss_pred             CCHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEecCc-HHHHHHH
Confidence            34555556666655433  5789999999999999887765532221                 02222221 1100000


Q ss_pred             ------HHHHHHHHHHHhcc--CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          442 ------LMGLVKEIRDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       442 ------l~~~lrei~~~~~~--~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                            ....+..+...+..  .......||||||+-.+.......|++..+.  ..+++||+...
T Consensus       407 ~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~  470 (988)
T PRK13889        407 EGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP  470 (988)
T ss_pred             hhccCcchhhHHHHHhhhcccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence                  00111111111111  0112345999999999987777777665543  56889988754

>PRK14532 adenylate kinase; Provisional

Probab=96.75  E-value=0.028  Score=54.81  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +|+|.||||+||||+|+.||+.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999985

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.73  E-value=0.011  Score=61.92  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |-|+|+|.||+|||++|+.|+..+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence            56899999999999999999998754

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.73  E-value=0.021  Score=61.72  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++..+|..+.
T Consensus       142 vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        142 VIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.73  E-value=0.0084  Score=58.37  Aligned_cols=53  Identities=6%  Similarity=0.006  Sum_probs=33.4

Q ss_pred             CeEEEEEccc-hhhHHHHHHHHHHHhccCC--CcEEEEEecCCccchHHHhhcceEe
Q 036742          461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTD--SCKLILCCEDDVDIIESVKTHCKVI  514 (629)
Q Consensus       461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~--~~~~ILitN~~~~I~~aLrSR~~~I  514 (629)
                      +.++++||.- .|.......+..++.....  ...+|+++++.+.+. .+..|+.++
T Consensus       116 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~-~~~d~~~~l  171 (180)
T cd03214         116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA-RYADRVILL  171 (180)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence            3499999986 4666666667666665433  467788887765433 333444443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=96.73  E-value=0.01  Score=64.58  Aligned_cols=57  Identities=16%  Similarity=0.359  Sum_probs=39.2

Q ss_pred             EEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc--------------chHHHhhcceEeeccCC
Q 036742          463 MIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD--------------IIESVKTHCKVIKVDPP  519 (629)
Q Consensus       463 VIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~--------------I~~aLrSR~~~I~F~pp  519 (629)
                      ||.+||+.--.-...-.|+++++. +..++.++.|+|+...              .+.-|..||.++.+..+
T Consensus       196 lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~  267 (467)
T KOG2383|consen  196 LLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSG  267 (467)
T ss_pred             eeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHHHhheEEecCCc
Confidence            899999988776666778888874 4455666667776432              13456778877766553

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.72  E-value=0.025  Score=62.32  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      ..|+|.||+|+||||++..||..+...
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~  268 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGK  268 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            368899999999999999999987533

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.72  E-value=0.014  Score=61.10  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.|+||+||||+|+.|++.+
T Consensus         4 liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          4 IILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHC
Confidence            47899999999999999999986

>PRK06762 hypothetical protein; Provisional

Probab=96.71  E-value=0.011  Score=56.53  Aligned_cols=23  Identities=43%  Similarity=0.720  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+|+||+||||+|+.+++.+
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.70  E-value=0.0097  Score=58.14  Aligned_cols=23  Identities=39%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+||||+++.+++|..+
T Consensus        31 ~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhcc
Confidence            48999999999999999999865

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=96.68  E-value=0.013  Score=69.59  Aligned_cols=115  Identities=12%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA  441 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~  441 (629)
                      ..++..+.+..++..+  +.++|.|+||||||++++++...+...+.                 .++-+.+. ..... .
T Consensus       353 Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~-----------------~V~~~ApT-g~Aa~-~  411 (744)
T TIGR02768       353 LSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGY-----------------RVIGAALS-GKAAE-G  411 (744)
T ss_pred             CCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCC-----------------eEEEEeCc-HHHHH-H
Confidence            3455666666665543  36889999999999999999876643221                 12222221 11110 0


Q ss_pred             HHH-------HHHHHHHHhcc--CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          442 LMG-------LVKEIRDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       442 l~~-------~lrei~~~~~~--~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      +.+       .+..+...+..  .......||||||+-.+.......|+.....  ..+++||+...
T Consensus       412 L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~  476 (744)
T TIGR02768       412 LQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP  476 (744)
T ss_pred             HHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence            000       01111111111  1112345999999999987766666654432  46788888743

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=96.63  E-value=0.014  Score=67.51  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=27.1

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .||||||+-.+.......|++.+   ...+++||+...
T Consensus       261 dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~  295 (586)
T TIGR01447       261 DVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK  295 (586)
T ss_pred             cEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence            39999999999877666665554   467889998764

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>cd01394 radB RadB

Probab=96.60  E-value=0.02  Score=57.31  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=26.6

Q ss_pred             HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |-.++..|-.+  .++|+|+||+|||+++..+|.++.
T Consensus         8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~   44 (218)
T cd01394           8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA   44 (218)
T ss_pred             HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44555544333  378999999999999999998863

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.60  E-value=0.012  Score=57.10  Aligned_cols=43  Identities=9%  Similarity=0.014  Sum_probs=30.0

Q ss_pred             CeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      +.|+++||.. .|.......+..++........+|+++++...+
T Consensus       117 p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  160 (178)
T cd03247         117 APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI  160 (178)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence            4599999986 456666666666665544456788888877654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00767 rho transcription termination factor Rho

Probab=96.58  E-value=0.012  Score=64.76  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ...++|.||+|||||+++++|++.+.
T Consensus       168 Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       168 GQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCEEEEECCCCCChhHHHHHHHHhhc
Confidence            34689999999999999999999863

Members of this family differ in the specificity of RNA binding.

>PRK13808 adenylate kinase; Provisional

Probab=96.57  E-value=0.033  Score=60.08  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|||+||||+||||+++.|+..+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~y   24 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQY   24 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999985

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=96.56  E-value=0.02  Score=63.97  Aligned_cols=132  Identities=15%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             cccccHHHHHHHHHHHHcCC---CC---------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC-Cc
Q 036742          359 GFICHRHEAQLLKELVVDGN---CP---------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS-SA  425 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~g~---~p---------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s-S~  425 (629)
                      .|.|++++++.+.-+|-.|.   +|         ++||.|.|||.|+-|.+-+-+-. .-.+|           ..+ ..
T Consensus       332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-PIaVY-----------TSGKGS  399 (729)
T KOG0481|consen  332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-PIAVY-----------TSGKGS  399 (729)
T ss_pred             hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-ceEEE-----------ecCCCc
Confidence            57899999999998886543   22         69999999999999999665431 11110           000 00


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------  488 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------  488 (629)
                      ...-+.++.-+..          ...+|-..+    -..+.|++|||+|.|.++..-++...||.-+             
T Consensus       400 SAAGLTASV~RD~----------~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LN  469 (729)
T KOG0481|consen  400 SAAGLTASVIRDP----------STREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLN  469 (729)
T ss_pred             ccccceeeEEecC----------CcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeec
Confidence            0111112111100          001111111    1134599999999998877777777776432             


Q ss_pred             CCcEEEEEecCC-----------c--cchHHHhhcce
Q 036742          489 DSCKLILCCEDD-----------V--DIIESVKTHCK  512 (629)
Q Consensus       489 ~~~~~ILitN~~-----------~--~I~~aLrSR~~  512 (629)
                      +.+.++.++|..           +  +++++|.|||-
T Consensus       470 SRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFD  506 (729)
T KOG0481|consen  470 SRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFD  506 (729)
T ss_pred             chhhhhhhcCCccccccccCCcccccchhhhHhhhcc
Confidence            334455566642           1  25789999984

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=96.56  E-value=0.069  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++++.||+|+|||+.+...+-
T Consensus        15 ~~~li~aptGsGKT~~~~~~~l   36 (169)
T PF00270_consen   15 KNVLISAPTGSGKTLAYILPAL   36 (169)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCccHHHHHHHHH
Confidence            4699999999999999885554

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.56  E-value=0.0019  Score=58.00  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.|+||+||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999995

...

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.55  E-value=0.019  Score=57.79  Aligned_cols=35  Identities=34%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |-+++..|-.+  .++|+||||+|||++|..+|.++.
T Consensus        12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~   48 (225)
T PRK09361         12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA   48 (225)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44445444333  478999999999999999998753

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.55  E-value=0.017  Score=65.60  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||++..||..+
T Consensus       352 vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        352 VIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999865

>PF13245 AAA_19: Part of AAA domain

Probab=96.54  E-value=0.0032  Score=53.34  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=16.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.+++.||||||||+++..++.++
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            456779999999995544444444

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.54  E-value=0.0023  Score=60.94  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|+|+|||||||+|++||+.+
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999997

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=96.54  E-value=0.024  Score=64.24  Aligned_cols=51  Identities=22%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.+|+++...++.++.|+.++.... ..+||+||+|+||||+++++..++.
T Consensus       217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       217 VRLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             CCCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence            45678888888888889998886533 3588999999999999999888764

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.54  E-value=0.023  Score=62.14  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++..||..+
T Consensus       139 ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999875

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.53  E-value=0.013  Score=56.66  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             CCeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          460 SNAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       460 ~~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      ...+|++||.- .|.......+.+++.+......+|+++++...+
T Consensus       114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  158 (171)
T cd03228         114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI  158 (171)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence            34599999975 456666666666666554456788888876654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.53  E-value=0.011  Score=59.62  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +.++|+||.|+||||+.+.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            4689999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07261 topology modulation protein; Provisional

Probab=96.52  E-value=0.007  Score=58.83  Aligned_cols=23  Identities=48%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|+..+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999885

>PRK00625 shikimate kinase; Provisional

Probab=96.52  E-value=0.022  Score=55.71  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +|+|.|.||+||||+++.+|+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999997

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.51  E-value=0.017  Score=54.41  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS  460 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~  460 (629)
                      .+.|.||.|+||||++++++..+....-         .+.+.....+..+.. ...+.. ....+    ...+.    ..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G---------~i~~~~~~~i~~~~~-lS~G~~-~rv~l----aral~----~~   88 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPDEG---------IVTWGSTVKIGYFEQ-LSGGEK-MRLAL----AKLLL----EN   88 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCce---------EEEECCeEEEEEEcc-CCHHHH-HHHHH----HHHHh----cC
Confidence            5789999999999999999986421110         000000001111111 111111 00111    11111    13


Q ss_pred             CeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      ..++++||.. .+.......+..++.+.  ...+|+++++.+.+
T Consensus        89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~  130 (144)
T cd03221          89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL  130 (144)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence            4599999986 45666666666666554  34677777765443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.50  E-value=0.069  Score=53.39  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++++|+||+||||+|+.+|..+
T Consensus         5 ~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          5 IHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999985

>PRK14527 adenylate kinase; Provisional

Probab=96.50  E-value=0.055  Score=53.18  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..++|+||||+||||+|+.+|..+
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999886

>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]

Probab=96.49  E-value=0.029  Score=63.60  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=86.6

Q ss_pred             cccccHHHHHHHHHHHHcCC---------CC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc---C
Q 036742          359 GFICHRHEAQLLKELVVDGN---------CP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA---S  423 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~g~---------~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~---s  423 (629)
                      .|.|++.+++.|.-+|-.|.         ++   +||+.|.|-+.|+-|.+.+.+-.- ..           +...   +
T Consensus       302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAp-lA-----------I~TTGRGS  369 (818)
T KOG0479|consen  302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAP-LA-----------IATTGRGS  369 (818)
T ss_pred             ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccc-cc-----------ccccCCCC
Confidence            58899999998887775332         11   699999999999999999887531 11           1111   1


Q ss_pred             Ccc--eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742          424 SAH--HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------  488 (629)
Q Consensus       424 S~~--vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------  488 (629)
                      |+-  ..-+......|..          +-.....--....|++|||+|.|+....-++..+||...             
T Consensus       370 SGVGLTAAVTtD~eTGER----------RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLN  439 (818)
T KOG0479|consen  370 SGVGLTAAVTTDQETGER----------RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLN  439 (818)
T ss_pred             CCccceeEEeeccccchh----------hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhc
Confidence            111  1111111222211          111111111224599999999999888888888888643             


Q ss_pred             CCcEEEEEecCCcc-------------chHHHhhcce--EeeccCCCH
Q 036742          489 DSCKLILCCEDDVD-------------IIESVKTHCK--VIKVDPPVT  521 (629)
Q Consensus       489 ~~~~~ILitN~~~~-------------I~~aLrSR~~--~I~F~ppt~  521 (629)
                      ..|.++.++|..+.             +.+.|.+||-  .|.+...+.
T Consensus       440 ARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~  487 (818)
T KOG0479|consen  440 ARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA  487 (818)
T ss_pred             cceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence            55778888886421             5788999983  344444443

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.48  E-value=0.018  Score=61.41  Aligned_cols=26  Identities=42%  Similarity=0.626  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +.++|.||+|+|||++|..||+.+.+
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~   30 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNG   30 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            35889999999999999999998643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.47  E-value=0.027  Score=57.06  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |-++|..|-.+  .++++|+||+|||+++..++.+.
T Consensus        14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            44444444222  58899999999999999997653

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.47  E-value=0.034  Score=62.42  Aligned_cols=54  Identities=24%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      ...+|++++..+.....+..++... ..-+|++||.|+||||+..++..+++...
T Consensus       233 ~~l~l~~Lg~~~~~~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~  286 (500)
T COG2804         233 VILDLEKLGMSPFQLARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTPE  286 (500)
T ss_pred             ccCCHHHhCCCHHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence            4667899999999889999998863 33588999999999999999999986543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.46  E-value=0.0087  Score=58.64  Aligned_cols=23  Identities=43%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++++|+..+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998874

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.45  E-value=0.018  Score=64.60  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             HHHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          368 QLLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       368 ~~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..|-+++..|-.+  .++|+|+||+|||+++..+|..+.
T Consensus        67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a  105 (446)
T PRK11823         67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA  105 (446)
T ss_pred             HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455555555443  478999999999999999998763

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.45  E-value=0.0071  Score=58.12  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.45  E-value=0.038  Score=61.79  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+|++|+||||++..+|..+.
T Consensus        97 vI~lvG~~GsGKTTtaakLA~~L~  120 (437)
T PRK00771         97 TIMLVGLQGSGKTTTAAKLARYFK  120 (437)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            588999999999999999998874

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=96.43  E-value=0.011  Score=67.91  Aligned_cols=42  Identities=7%  Similarity=0.032  Sum_probs=33.6

Q ss_pred             CCeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          460 SNAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       460 ~~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      +++++||||+- .|.++.+..|+..+.+-...+-||-+++++.
T Consensus       533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t  575 (604)
T COG4178         533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT  575 (604)
T ss_pred             CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence            45699999995 5688888899999887667788888887653

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.41  E-value=0.024  Score=59.87  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          382 ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++|.||+|+|||++|..||+.+.
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~   24 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLN   24 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            68999999999999999999863

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.40  E-value=0.0058  Score=59.99  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++++..+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57799999999999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.39  E-value=0.053  Score=49.98  Aligned_cols=22  Identities=41%  Similarity=0.649  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.|+|||||||+|+.||+.+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999986

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=96.34  E-value=0.034  Score=64.08  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.+|+++...++.++.|.+++... ...|||+||+|+||||+..++..++.
T Consensus       292 ~~~l~~lg~~~~~~~~l~~~~~~~-~Glilv~G~tGSGKTTtl~a~l~~~~  341 (564)
T TIGR02538       292 QLDIDKLGFEPDQKALFLEAIHKP-QGMVLVTGPTGSGKTVSLYTALNILN  341 (564)
T ss_pred             cCCHHHcCCCHHHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence            346788888888888888888643 24689999999999999999998874

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.32  E-value=0.038  Score=53.50  Aligned_cols=44  Identities=9%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             CCCeEEEEEccchhhH-H--HHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742          459 VSNAMIVIYEVDKAAE-H--IQYLIKWIMDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       459 ~~~kVIIIDEID~Ls~-~--~q~aLlrilEe~~~~~~~ILitN~~~~  502 (629)
                      ....+|||||+-.... +  ..+.+..+++.-+...-+|+|......
T Consensus        94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~  140 (159)
T cd00561          94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK  140 (159)
T ss_pred             CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence            3456999999977622 1  234456677777788899999976543

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK13947 shikimate kinase; Provisional

Probab=96.31  E-value=0.0034  Score=60.13  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .+|+|.|+|||||||+|+.||+.+ +.
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~l-g~   27 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTL-SF   27 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh-CC
Confidence            469999999999999999999997 44

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.30  E-value=0.031  Score=57.98  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++++||||||||+++..+|...
T Consensus        38 ~~lI~G~pGtGKT~l~~qf~~~~   60 (259)
T TIGR03878        38 VINITGVSDTGKSLMVEQFAVTQ   60 (259)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            48899999999999999988764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.072  Score=60.21  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHHHhcc
Q 036742          377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAI  455 (629)
Q Consensus       377 g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~  455 (629)
                      ....+++++||||||||+++++++.+  ....                   ..++.. ............+++...   .
T Consensus        16 ~~~~~v~~~g~~~~~~t~~~~~~a~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~   71 (494)
T COG0464          16 EPPKGVLLHGPPGTGKTLLARALANE--GAEF-------------------LSINGPEILSKYVGESELRLRELFE---E   71 (494)
T ss_pred             CCCCCceeeCCCCCchhHHHHHHHhc--cCcc-------------------cccCcchhhhhhhhHHHHHHHHHHH---H
Confidence            34558999999999999999999987  2210                   111111 000000011122222222   1


Q ss_pred             CcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccCCCc-EEEEEecCCccchHHHhhcc---eEeeccCCC
Q 036742          456 TPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYTDSC-KLILCCEDDVDIIESVKTHC---KVIKVDPPV  520 (629)
Q Consensus       456 ~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~~~~-~~ILitN~~~~I~~aLrSR~---~~I~F~ppt  520 (629)
                      .......++++||+|.+.+           .....|...++...... .++..+|.+..++++++.-.   ..+.+..+.
T Consensus        72 a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (494)
T COG0464          72 AEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPD  151 (494)
T ss_pred             HHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCC
Confidence            1122226999999999833           23455666665444222 22334666666777776543   245566666


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      .....+++........+ -.+..+..++..+.|....-+..|
T Consensus       152 ~~~~~ei~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~l  192 (494)
T COG0464         152 EAGRLEILQIHTRLMFL-GPPGTGKTLAARTVGKSGADLGAL  192 (494)
T ss_pred             HHHHHHHHHHHHhcCCC-cccccHHHHHHhcCCccHHHHHHH
Confidence            65555555544332222 124567778877776554444443

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.28  E-value=0.0034  Score=58.74  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +|+|+|+||+||||+|+.+|..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            47999999999999999999987

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK06547 hypothetical protein; Provisional

Probab=96.27  E-value=0.006  Score=59.62  Aligned_cols=34  Identities=38%  Similarity=0.523  Sum_probs=26.7

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +...+..+....|+|.|++|+||||+|+.|++.+
T Consensus         6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547          6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3334455555578899999999999999999985

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.25  E-value=0.0059  Score=64.83  Aligned_cols=39  Identities=44%  Similarity=0.605  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++..+.|..+++.+  .++|++||+|+||||++++++..+.
T Consensus       119 ~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       119 AAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            44567788888754  3799999999999999999998873

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.25  E-value=0.019  Score=57.25  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++-.+|..+.
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHHHHh
Confidence            477999999999999888888764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.24  E-value=0.029  Score=54.07  Aligned_cols=39  Identities=8%  Similarity=0.066  Sum_probs=28.1

Q ss_pred             CeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ..++++||... |.......+..++.+.  ...+|+++++..
T Consensus       110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~  149 (166)
T cd03223         110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS  149 (166)
T ss_pred             CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence            45999999864 5666677777777654  356888888764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.20  E-value=0.0043  Score=59.99  Aligned_cols=25  Identities=32%  Similarity=0.577  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.++|.||||+||||+|+.++..+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK10436 hypothetical protein; Provisional

Probab=96.19  E-value=0.018  Score=64.82  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.+|+++...+..++.|+.++... ...+|++||.|+||||++.++..++.
T Consensus       194 ~~~L~~LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~~  243 (462)
T PRK10436        194 ALDLETLGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTLN  243 (462)
T ss_pred             CCCHHHcCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhhC
Confidence            347788888888888888888642 33689999999999999999888874

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.19  E-value=0.073  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||+++..++..
T Consensus         4 ki~i~G~~~vGKSsli~~~~~~   25 (166)
T cd01869           4 KLLLIGDSGVGKSCLLLRFADD   25 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK03839 putative kinase; Provisional

Probab=96.18  E-value=0.0039  Score=60.49  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+++.||+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999996

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.15  E-value=0.024  Score=62.08  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=26.9

Q ss_pred             HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|-.+|..|-.+  .++|+|+||+|||+++..+|..+.
T Consensus        70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a  107 (372)
T cd01121          70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA  107 (372)
T ss_pred             HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344555444433  488999999999999999998763

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=96.13  E-value=0.063  Score=65.93  Aligned_cols=114  Identities=13%  Similarity=0.090  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL  442 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l  442 (629)
                      .++..+.+..+..  .-+.++|.|++||||||+.+++...+...++                 .++-+.+. ..-.. .+
T Consensus       383 s~eQ~~Av~~i~~--~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-----------------~V~g~ApT-gkAA~-~L  441 (1102)
T PRK13826        383 SDEQKTAIEHVAG--PARIAAVVGRAGAGKTTMMKAAREAWEAAGY-----------------RVVGGALA-GKAAE-GL  441 (1102)
T ss_pred             CHHHHHHHHHHhc--cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEEcCc-HHHHH-HH
Confidence            4454555555432  2346889999999999999999876533221                 12222221 11110 11


Q ss_pred             HH-------HHHHHHHHh-cc-CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          443 MG-------LVKEIRDNL-AI-TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       443 ~~-------~lrei~~~~-~~-~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+       .+..+...+ .. ..-..+.||||||+-.+.......|++..+.  ..+++||+...
T Consensus       442 ~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~  505 (1102)
T PRK13826        442 EKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDP  505 (1102)
T ss_pred             HHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence            00       011110000 00 1112245999999999988877777777653  56888888754

>PF13479 AAA_24: AAA domain

Probab=96.13  E-value=0.0095  Score=59.92  Aligned_cols=19  Identities=58%  Similarity=0.826  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMAL  399 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraL  399 (629)
                      .++||||||+|||++|..+
T Consensus         5 ~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    5 KILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             EEEEECCCCCCHHHHHHhC
Confidence            5899999999999999876

>COG5275 BRCT domain type II [General function prediction only]

Probab=96.13  E-value=0.002  Score=64.14  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             CcccccccCCCCccc-CCCCccccccccCCCc---cccccccccccCccchhhhhhhcCCCCCCCCCCccccCChhhHhH
Q 036742          261 ANLVVSRQSSNGKFS-SEGSKTSYASVKSSTS---STKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQ  336 (629)
Q Consensus       261 ~~~~~~~~~~~g~~~-~~~sk~s~~~~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~ie  336 (629)
                      .+.+++++|| |+++ .+|+|++.++.+.-++   ++++.+..++.+|+++|+.+++..++-++. ....+.     --+
T Consensus       175 ~a~~lvk~yG-grvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~~~pa~gg~-gaaaek-----a~~  247 (276)
T COG5275         175 DAKTLVKVYG-GRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIKDTPAAGGG-GAAAEK-----ATE  247 (276)
T ss_pred             hHHHHHHHhC-CeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHhcCcccCCc-hHHHHH-----HHH
Confidence            3578999999 9998 6999999998877644   888999999999999999999988886654 222111     111


Q ss_pred             HHHH----hhccCchhhhccCCCCCCc
Q 036742          337 KAVV----IEKLRPFWADKHQPSSLNG  359 (629)
Q Consensus       337 ~a~v----~~~~~~lW~eKyrP~tfdd  359 (629)
                      ++..    .-.....|.++|++.+-..
T Consensus       248 K~e~~~~~~s~s~~~~~~k~k~~s~~~  274 (276)
T COG5275         248 KAESRDECGSASSGVMDDSNKKESQPS  274 (276)
T ss_pred             HHHhhhhhhhhhhhhhhcccccccccc
Confidence            2111    1122356889998876543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.13  E-value=0.0035  Score=59.74  Aligned_cols=22  Identities=41%  Similarity=0.721  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||+|+||||+|+.+++.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999986

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd01868 Rab11_like Rab11-like

Probab=96.11  E-value=0.059  Score=50.60  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+++.|++|+|||++++++...
T Consensus         5 ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999754

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.09  E-value=0.055  Score=55.24  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|||||+++..++..+
T Consensus        26 ~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         26 LILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999986666554

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=96.08  E-value=0.042  Score=58.54  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHH
Q 036742          367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGL  445 (629)
Q Consensus       367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~  445 (629)
                      -+.|.+|+..|-  .++++|+.|+|||+++..++-.+. |...        +.-.+...+.|+++++.+.+..   +...
T Consensus        79 P~lId~~fr~g~--~~~~~gdsg~GKttllL~l~IalaaG~~l--------fG~~v~epGkvlyvslEl~re~---~L~R  145 (402)
T COG3598          79 PQLIDEFFRKGY--VSILYGDSGVGKTTLLLYLCIALAAGKNL--------FGNKVKEPGKVLYVSLELYRED---ILER  145 (402)
T ss_pred             hhhhhHHhhcCe--eEEEecCCcccHhHHHHHHHHHHHhhHHH--------hcccccCCCeEEEEEeccChHH---HHHH
Confidence            356677777765  488999999999998776553331 1111        0012455677999999776652   3344


Q ss_pred             HHHHHHHhccC
Q 036742          446 VKEIRDNLAIT  456 (629)
Q Consensus       446 lrei~~~~~~~  456 (629)
                      ++.+...+.+.
T Consensus       146 l~~v~a~mgLs  156 (402)
T COG3598         146 LEPVRARMGLS  156 (402)
T ss_pred             HHHHHHHcCCC
Confidence            45555444443

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.06  E-value=0.0089  Score=65.22  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=24.7

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          377 GNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       377 g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |....++|+||+|||||++++.+++.+..
T Consensus       131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            44457899999999999999999998743

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.06  E-value=0.016  Score=57.19  Aligned_cols=53  Identities=6%  Similarity=0.025  Sum_probs=33.1

Q ss_pred             CeEEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccchHHHhhcceE
Q 036742          461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDIIESVKTHCKV  513 (629)
Q Consensus       461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I~~aLrSR~~~  513 (629)
                      ..||++||... |.......+.+++.+.. ...-+|+++++.......+..|+.+
T Consensus       130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~  184 (194)
T cd03213         130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL  184 (194)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence            45999999764 55666666666666543 3556888888765433334445443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.05  E-value=0.0061  Score=50.30  Aligned_cols=22  Identities=45%  Similarity=0.664  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|.|++|+||||++++++..+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.04  E-value=0.045  Score=50.99  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+++.|++|+|||++++.+...
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998854

Rab GTPases are implicated in vesicle trafficking.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.04  E-value=0.0064  Score=62.98  Aligned_cols=53  Identities=34%  Similarity=0.405  Sum_probs=37.3

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      +.+++++.-.....+.+.+++...  ...++||.||+|+||||++.+++.++...
T Consensus       100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence            447788876665555555555432  12379999999999999999999987443

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.04  E-value=0.05  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      +++.|++|+|||++++.+...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.03  E-value=0.22  Score=52.98  Aligned_cols=26  Identities=38%  Similarity=0.616  Sum_probs=23.1

Q ss_pred             CCC-eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          378 NCP-HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       378 ~~p-~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..| .++|.|++||||||+|..||..+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            344 68899999999999999999997

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.03  E-value=0.05  Score=53.77  Aligned_cols=24  Identities=46%  Similarity=0.681  Sum_probs=19.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+.+||.||+|+|||+|-..+...
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~   26 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNG   26 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHS
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcC
Confidence            357999999999999999988864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.03  E-value=0.14  Score=47.75  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+++..++..
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.02  E-value=0.0084  Score=56.33  Aligned_cols=23  Identities=39%  Similarity=0.713  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.|+.|+||||+++.+++.+
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999987

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK06696 uridine kinase; Validated

Probab=96.02  E-value=0.0099  Score=60.08  Aligned_cols=41  Identities=27%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHc---CCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          364 RHEAQLLKELVVD---GNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       364 e~~~~~Lk~~L~~---g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +++++.|.+.+..   +...-|.|.|++|+||||+|+.|+..|.
T Consensus         4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696          4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556666666642   2233577999999999999999999984

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=96.01  E-value=0.057  Score=51.21  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |++.|++|+|||+++..++..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~   21 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTN   21 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhC
Confidence            579999999999999988764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PRK14530 adenylate kinase; Provisional

Probab=96.01  E-value=0.0055  Score=61.46  Aligned_cols=24  Identities=38%  Similarity=0.645  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.||||+||||+|+.||+.+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999999986

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=96.01  E-value=0.077  Score=69.22  Aligned_cols=122  Identities=19%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      +..+...+...+.+..++..+ .+.++|.|++|||||++++++...+...+.                 .++-+.++ .+
T Consensus       425 ~~~~~Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~-----------------~V~~lAPT-gr  485 (1960)
T TIGR02760       425 LSEFALSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQGY-----------------EIQIITAG-SL  485 (1960)
T ss_pred             cccCCCCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhcCC-----------------eEEEEeCC-HH
Confidence            345555677777787777753 346889999999999999999987643322                 12323222 11


Q ss_pred             hhHHHHHH----------HHHHH--------HHHhccC-cC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEE
Q 036742          437 NAKYALMG----------LVKEI--------RDNLAIT-PE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC  496 (629)
Q Consensus       437 ~~k~~l~~----------~lrei--------~~~~~~~-~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILi  496 (629)
                      ..+.+-..          .+...        ...|... .. ..+.||||||+..+.......|++..+.  .++++||+
T Consensus       486 AA~~L~e~~g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlv  563 (1960)
T TIGR02760       486 SAQELRQKIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILL  563 (1960)
T ss_pred             HHHHHHHHhcchhhhHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEE
Confidence            11111000          01100        0011100 11 2345999999999988777777766542  56788888


Q ss_pred             ecC
Q 036742          497 CED  499 (629)
Q Consensus       497 tN~  499 (629)
                      ...
T Consensus       564 GD~  566 (1960)
T TIGR02760       564 NDS  566 (1960)
T ss_pred             cCh
Confidence            754

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.99  E-value=0.0065  Score=60.88  Aligned_cols=22  Identities=41%  Similarity=0.671  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++++|+||+|||++++.++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5799999999999999999873

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.98  E-value=0.0051  Score=57.67  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++|+|+||+||||+|+.++..+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            6899999999999999999985

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.96  E-value=0.017  Score=56.43  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      .|+++|.|||||||++..|+ ++ +..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~l-g~~   26 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-EL-GYK   26 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-Hh-CCc
Confidence            48899999999999999999 64 554

>cd04106 Rab23_lke Rab23-like subfamily

Probab=95.96  E-value=0.077  Score=49.47  Aligned_cols=21  Identities=14%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..+...
T Consensus         3 v~~vG~~~~GKTsl~~~~~~~   23 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKG   23 (162)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999988764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01861 Rab6 Rab6 subfamily

Probab=95.96  E-value=0.054  Score=50.51  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||+|++.+...
T Consensus         2 ki~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=95.93  E-value=0.095  Score=64.87  Aligned_cols=131  Identities=14%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCCcHHHHHH-HHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742          379 CPHILIKGQSGSGKRALAM-ALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP  457 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAr-aLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~  457 (629)
                      .+.++++||||+|||.+.- ++-.++. .                   .++.+|-+........+ ..+..-..-+...+
T Consensus      1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~-~-------------------ev~~~Nfs~~t~T~s~l-s~Ler~t~yy~~tg 1552 (3164)
T COG5245        1494 LRSYIYCGPPGSGKEMLMCPSLRSELI-T-------------------EVKYFNFSTCTMTPSKL-SVLERETEYYPNTG 1552 (3164)
T ss_pred             cceEEEECCCCCccchhcchhhhhhhh-e-------------------eeeEEeeccccCCHHHH-HHHHhhceeeccCC
Confidence            4479999999999998532 3333321 1                   26777776443332122 22222122121111


Q ss_pred             --------CCCCeEEEEEccchh-------hHHHHHHHHHHHhccC------------CCcEEEEEecCCcc-----chH
Q 036742          458 --------EVSNAMIVIYEVDKA-------AEHIQYLIKWIMDGYT------------DSCKLILCCEDDVD-----IIE  505 (629)
Q Consensus       458 --------~~~~kVIIIDEID~L-------s~~~q~aLlrilEe~~------------~~~~~ILitN~~~~-----I~~  505 (629)
                              .....|||.|||. |       .+...-+|+.++|.-.            .++.++.+||.+.+     ..+
T Consensus      1553 ~~~l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245        1553 VVRLYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred             eEEEccCcchhheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence                    1123499999998 4       2233344556666411            23345557887654     357


Q ss_pred             HHhhcceEeeccCCCHHHHHHHHHHH
Q 036742          506 SVKTHCKVIKVDPPVTHEIMEVLIQI  531 (629)
Q Consensus       506 aLrSR~~~I~F~ppt~eei~~iL~~i  531 (629)
                      .+.++...+.+..|.-..+..+....
T Consensus      1632 Rf~r~~v~vf~~ype~~SL~~Iyea~ 1657 (3164)
T COG5245        1632 RFIRKPVFVFCCYPELASLRNIYEAV 1657 (3164)
T ss_pred             HHhcCceEEEecCcchhhHHHHHHHH
Confidence            78888777777777777777666543

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional

Probab=95.92  E-value=0.11  Score=66.57  Aligned_cols=117  Identities=10%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH---
Q 036742          366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL---  442 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l---  442 (629)
                      ..+.+..++.. .-+.++|.|.+||||||+++++...+.....             .....++-+.+. .+..+.+-   
T Consensus       972 Q~~Av~~il~s-~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~-------------~~~~~V~glAPT-grAAk~L~e~G 1036 (1747)
T PRK13709        972 QRAATRMILES-TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPE-------------SERPRVVGLGPT-HRAVGEMRSAG 1036 (1747)
T ss_pred             HHHHHHHHHhC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhc-------------ccCceEEEECCc-HHHHHHHHhcC
Confidence            33444444443 2347899999999999999999877531100             000012222221 11110000   


Q ss_pred             --HHHHHHHHHH---hcc---CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          443 --MGLVKEIRDN---LAI---TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       443 --~~~lrei~~~---~~~---~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                        ...+..++..   +..   .....+.||||||+-.+.......|++.++.  .++++||+...
T Consensus      1037 i~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709       1037 VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred             cchhhHHHHhcccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence              0011111110   000   1112346999999999988877777777653  36889998764

>cd04122 Rab14 Rab14 subfamily

Probab=95.91  E-value=0.089  Score=49.72  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      +++.|++|+|||++++.++..
T Consensus         5 i~iiG~~~vGKTsli~~~~~~   25 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEK   25 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=95.90  E-value=0.14  Score=54.14  Aligned_cols=186  Identities=12%  Similarity=0.152  Sum_probs=101.4

Q ss_pred             hccCCC-CCCcccccHHH---HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          350 DKHQPS-SLNGFICHRHE---AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       350 eKyrP~-tfddIiG~e~~---~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .+-.|. ...++++-..+   +..+.-.-..|.  ...+||-+|.|||+.++.+|..- ..                   
T Consensus        63 ~q~~~~~~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-p~-------------------  120 (297)
T COG2842          63 VQAALEKLAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-PN-------------------  120 (297)
T ss_pred             cccccccccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-cc-------------------
Confidence            333433 56778876664   334444444544  57899999999999999888752 22                   


Q ss_pred             ceEEEecccchhhHHHHHH-----------HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE
Q 036742          426 HHVELNVNLQANAKYALMG-----------LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI  494 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~-----------~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I  494 (629)
                       .+.+.++.......++..           .+................+|++||+|.|...+.+.|+++.++  ..+-++
T Consensus       121 -~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~--~Gi~~v  197 (297)
T COG2842         121 -ALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK--TGIGVV  197 (297)
T ss_pred             -ceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh--hCceEE
Confidence             122222211111000000           000000000000122345999999999999999999999885  456677


Q ss_pred             EEecCCc--------cchHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          495 LCCEDDV--------DIIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       495 LitN~~~--------~I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      ++.+..-        ...-.+.+|..   .+...-++.+++..+....+..    ..+..+..+.....|.+|..-.+|.
T Consensus       198 LvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~~----~~~~~v~~~~~~~~g~~~~L~~~l~  273 (297)
T COG2842         198 LVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLPT----EDELVLMQVIKETEGNIRRLDKILA  273 (297)
T ss_pred             EecChHHHhccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhCcc----chHHHHHHHHHhcchhHhHHHHHHh
Confidence            7776531        11122233321   1222223334554444433221    3567777888888899888777775


Q ss_pred             H
Q 036742          564 A  564 (629)
Q Consensus       564 ~  564 (629)
                      -
T Consensus       274 ~  274 (297)
T COG2842         274 G  274 (297)
T ss_pred             h
Confidence            4

>cd04110 Rab35 Rab35 subfamily

Probab=95.90  E-value=0.061  Score=53.01  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|++|+|||+|++.++..
T Consensus         8 kivvvG~~~vGKTsli~~l~~~   29 (199)
T cd04110           8 KLLIIGDSGVGKSSLLLRFADN   29 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional

Probab=95.89  E-value=0.14  Score=64.92  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc--c-----hHHHhhc--ceEeeccCCCHHHHHHHHHH
Q 036742          460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD--I-----IESVKTH--CKVIKVDPPVTHEIMEVLIQ  530 (629)
Q Consensus       460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~--I-----~~aLrSR--~~~I~F~ppt~eei~~iL~~  530 (629)
                      .+.||||||+-.+.......|++.++.  .++++||+......  +     ...+..+  +..+.+.        +|+. 
T Consensus       930 ~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~~QL~sV~aG~~F~~lq~~~~~~ta~L~--------eI~R-  998 (1623)
T PRK14712        930 SNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMK--------EIVR-  998 (1623)
T ss_pred             CCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcchhhcCCCCCCHHHHHHHHcCCCCeEEeC--------eeec-
Confidence            345999999999988877777777763  46889998864322  1     1111111  1111111        1111 


Q ss_pred             HHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          531 IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       531 i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                             . .++....+.....|++..+|..|+.
T Consensus       999 -------Q-~~elr~AV~~~~~g~~~~AL~~L~~ 1024 (1623)
T PRK14712        999 -------Q-TPELREAVYSLINRDVERALSGLER 1024 (1623)
T ss_pred             -------C-CHHHHHHHHHHHcCCHHHHHHHHhh
Confidence                   1 3556677777788999999999874

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.89  E-value=0.012  Score=57.78  Aligned_cols=39  Identities=41%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++..+.|...++.|.  .++|.||+|+||||++++++..+.
T Consensus        12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhcC
Confidence            556677887777765  699999999999999999998763

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PLN02674 adenylate kinase

Probab=95.89  E-value=0.29  Score=50.69  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|+|.||||+||+|+|+.||..+
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            3579999999999999999999985

>PRK14531 adenylate kinase; Provisional

Probab=95.88  E-value=0.0066  Score=59.41  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|+||||+||||+++.||..+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999986

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.87  E-value=0.0067  Score=58.81  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|+||+||||+|+.++..+.
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            589999999999999999999863

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PLN02840 tRNA dimethylallyltransferase

Probab=95.86  E-value=0.15  Score=56.60  Aligned_cols=25  Identities=40%  Similarity=0.713  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .|+|.||+|+|||++|..||+.+.+
T Consensus        23 vi~I~GptgsGKTtla~~La~~~~~   47 (421)
T PLN02840         23 VIVISGPTGAGKSRLALELAKRLNG   47 (421)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Confidence            5889999999999999999999743

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=95.86  E-value=0.063  Score=60.15  Aligned_cols=25  Identities=48%  Similarity=0.592  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...++|+|++|+||||+|..+|..+
T Consensus       255 p~vil~~G~~G~GKSt~a~~LA~~l  279 (475)
T PRK12337        255 PLHVLIGGVSGVGKSVLASALAYRL  279 (475)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999999986

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=95.85  E-value=0.0064  Score=58.10  Aligned_cols=28  Identities=39%  Similarity=0.646  Sum_probs=24.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      ..|+||++|-|||||||++..||... +.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~-~~   33 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKT-GL   33 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHh-CC
Confidence            35799999999999999999999664 44

>cd04113 Rab4 Rab4 subfamily

Probab=95.85  E-value=0.086  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||++++.+...
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=95.84  E-value=0.071  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+++..+...
T Consensus         5 ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.84  E-value=0.068  Score=51.68  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            57899999999999999999875

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd00876 Ras Ras family

Probab=95.80  E-value=0.087  Score=48.64  Aligned_cols=21  Identities=24%  Similarity=0.629  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+++.++...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK02496 adk adenylate kinase; Provisional

Probab=95.79  E-value=0.0074  Score=58.77  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||||+||||+|+.||+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.79  E-value=0.0071  Score=58.88  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||||+||||+|+.||..+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7999999999999999999985

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=95.79  E-value=0.075  Score=50.98  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..++.||.|+|||+++++++-.+.
T Consensus        23 ~~~i~G~NgsGKS~~l~~i~~~~~   46 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALG   46 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999876653

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=95.78  E-value=0.05  Score=53.41  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      ++|+||.|.|||++++.++-
T Consensus         2 ~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68999999999999999984

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=95.78  E-value=0.016  Score=62.61  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=39.4

Q ss_pred             CC-cccccHHHHHHHHHHHHc----C--CCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          357 LN-GFICHRHEAQLLKELVVD----G--NCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       357 fd-dIiG~e~~~~~Lk~~L~~----g--~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |+ ++.|.++.+..|-..++.    .  .-+.++|.||+|+|||++++.|-+.+..
T Consensus        59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~  114 (358)
T PF08298_consen   59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE  114 (358)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence            44 899999999888888862    1  1236889999999999999999988743

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=95.77  E-value=0.093  Score=52.85  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|.+|+|||+|+..++.
T Consensus        15 Ki~vvG~~gvGKTsli~~~~~   35 (219)
T PLN03071         15 KLVIVGDGGTGKTTFVKRHLT   35 (219)
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            589999999999999998764

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=95.76  E-value=0.049  Score=54.05  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+||.|+||||+.+.|+.-
T Consensus        31 ~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          31 LLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             EEEEECCCCCccHHHHHHHHHH
Confidence            5899999999999999999943

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd01878 HflX HflX subfamily

Probab=95.76  E-value=0.34  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..+.++|.|++|+|||++++++...
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcc
Confidence            3468999999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG3899 Predicted ATPase [General function prediction only]

Probab=95.76  E-value=0.24  Score=59.91  Aligned_cols=108  Identities=17%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccC----CCcEEEEEecCCccchHHHhhc--ceEeeccCCCHHHHHHHHHHHHHh
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYT----DSCKLILCCEDDVDIIESVKTH--CKVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~----~~~~~ILitN~~~~I~~aLrSR--~~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                      +-|||+|+++-+.......|..+|....    ....+.++.+....+....++.  ...|.+.|++..+....+...+..
T Consensus       155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~  234 (849)
T COG3899         155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC  234 (849)
T ss_pred             CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence            3499999999998888888888877543    0011222222222233333333  357999999999999999887754


Q ss_pred             cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742          535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN  569 (629)
Q Consensus       535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~  569 (629)
                      . .....+.+..|.+.+.|+.=-+...++.+...+
T Consensus       235 ~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~  268 (849)
T COG3899         235 T-KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEG  268 (849)
T ss_pred             c-ccccchHHHHHHHHhcCCCccHHHHHHHHHhCC
Confidence            2 345677899999999998877777777766543

>cd01864 Rab19 Rab19 subfamily

Probab=95.73  E-value=0.079  Score=49.91  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+++.|++|+|||+|++.+..
T Consensus         5 kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           5 KIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999998754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=95.67  E-value=0.071  Score=51.41  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|++.|++|+|||++++.+...
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~   23 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQG   23 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR01587 cas3_core CRISPR-associated helicase Cas3

Probab=95.67  E-value=0.079  Score=56.90  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +++.+|+|+|||+++...+-..
T Consensus         2 vvi~apTGsGKT~~~~~~~l~~   23 (358)
T TIGR01587         2 LVIEAPTGYGKTEAALLWALHS   23 (358)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999988776543

This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.

>cd04124 RabL2 RabL2 subfamily

Probab=95.66  E-value=0.081  Score=49.96  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|.+|+|||+|+..+...
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999888754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK13949 shikimate kinase; Provisional

Probab=95.66  E-value=0.0096  Score=57.86  Aligned_cols=23  Identities=39%  Similarity=0.644  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+++.+|+.+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999997

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.66  E-value=0.013  Score=56.69  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++++..+
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08233 hypothetical protein; Provisional

Probab=95.65  E-value=0.0081  Score=57.78  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -|.|.|+||+||||+|..|+..+
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999986

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=95.65  E-value=0.066  Score=53.32  Aligned_cols=23  Identities=43%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      |.|+|.||+|+|||+|...+...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~   23 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTG   23 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Confidence            46999999999999999988754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00154 Rab Rab family

Probab=95.65  E-value=0.093  Score=47.86  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+++.|++|+|||+++..+...
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.63  E-value=0.0097  Score=57.54  Aligned_cols=24  Identities=42%  Similarity=0.587  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+|++++..+.
T Consensus         9 ~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          9 VIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999984

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.62  E-value=0.18  Score=47.04  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |++.|++|+|||++++.+...
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999988864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=95.60  E-value=0.055  Score=55.08  Aligned_cols=21  Identities=19%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|.||.|+|||++.+.++.
T Consensus        33 ~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          33 CQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=95.59  E-value=0.085  Score=52.15  Aligned_cols=117  Identities=12%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS  460 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~  460 (629)
                      -|+++|++|+||||++..+....+...........-...........+.+...+..+.     +.++.+...+....  .
T Consensus         7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----~~~~~~~~~y~~~~--~   79 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----EEYRSLRPEYYRGA--N   79 (219)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH-----HHHHHHHHHHhcCC--C
Confidence            4899999999999999999987655332110000000000000000111222233332     33444444433221  2


Q ss_pred             CeEEEEEccc-hhhHHHHHHHHHHH-hccCCCcEEEEEecCCccch
Q 036742          461 NAMIVIYEVD-KAAEHIQYLIKWIM-DGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       461 ~kVIIIDEID-~Ls~~~q~aLlril-Ee~~~~~~~ILitN~~~~I~  504 (629)
                      ..+++.|..+ .-..+....+...+ +......++|++.|..+...
T Consensus        80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~  125 (219)
T COG1100          80 GILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD  125 (219)
T ss_pred             EEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence            2366666655 23333333333333 33335688999988766543

>PRK14709 hypothetical protein; Provisional

Probab=95.59  E-value=0.14  Score=57.90  Aligned_cols=134  Identities=11%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             Cccc-ccHHHHHHHHHHHH---cCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          358 NGFI-CHRHEAQLLKELVV---DGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       358 ddIi-G~e~~~~~Lk~~L~---~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +++. |.++.+..|++++-   .|...   .++|+|+-|.||++++..|...+ |...                   ..+
T Consensus       177 ~~~~~gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~ll-G~~~-------------------~~~  236 (469)
T PRK14709        177 DEATGGDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGIL-GDYA-------------------TTA  236 (469)
T ss_pred             HHHhCCCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHH-hhhc-------------------ccC
Confidence            5543 56778888888774   33332   47789999999999999888776 4321                   000


Q ss_pred             ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh--------------ccCCCcEEEEE
Q 036742          431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD--------------GYTDSCKLILC  496 (629)
Q Consensus       431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE--------------e~~~~~~~ILi  496 (629)
                      +.      ..+.......  ..+.+..-....+++.+|++.=..-....|..+.-              .+...+.++++
T Consensus       237 ~~------~~~~~~~~~~--~~~~lA~L~Gkrlv~~~E~~~g~~~~~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~  308 (469)
T PRK14709        237 AM------DTFTASKHDR--HPTDLAMLRGARLVTASETEEGRAWAEARIKQMTGGDTITARFMRQDFFEFVPQFKLTIV  308 (469)
T ss_pred             CH------HHHhhccccC--CchhhHhhcCCeEEEeecCCcccccCHHHHHhhhCCCcEEeecccCCceEEEeeeEEEEE
Confidence            00      0000000000  00001111123478888886421111122333221              12245678899


Q ss_pred             ecCCccc---hHHHhhcceEeeccCC
Q 036742          497 CEDDVDI---IESVKTHCKVIKVDPP  519 (629)
Q Consensus       497 tN~~~~I---~~aLrSR~~~I~F~pp  519 (629)
                      ||....+   +.++.+|+.+|.|...
T Consensus       309 ~N~~P~~~d~d~g~~RR~~iIPF~~~  334 (469)
T PRK14709        309 GNHKPRLRNVDEAARRRFNIVPFTRK  334 (469)
T ss_pred             cCCCCccCCCCceeEeeEEEEecCCC
Confidence            9998775   6789999999999754

>PRK14529 adenylate kinase; Provisional

Probab=95.58  E-value=0.11  Score=53.05  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||||+||||+++.||+.+.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999999863

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.58  E-value=0.069  Score=52.09  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+|+.|+||+|||++|..++..+
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~   25 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS   25 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc
Confidence            48999999999999999999875

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=95.58  E-value=0.084  Score=51.74  Aligned_cols=55  Identities=7%  Similarity=0.056  Sum_probs=33.7

Q ss_pred             CCeEEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccchHHHhhcceEeec
Q 036742          460 SNAMIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDIIESVKTHCKVIKV  516 (629)
Q Consensus       460 ~~kVIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I~~aLrSR~~~I~F  516 (629)
                      ...++++||.+. +.......+...+.+.. ....+|+++++...+  ..-.|+..++.
T Consensus       116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~--~~adrvi~i~~  172 (178)
T cd03239         116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF--ENADKLIGVLF  172 (178)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--hhCCeEEEEEE
Confidence            346999999986 45555555555554332 236788888875433  24556655554

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.58  E-value=0.019  Score=61.63  Aligned_cols=37  Identities=35%  Similarity=0.557  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +..+.|..++..+.  ++||+|++|+||||++++++.++
T Consensus       132 ~~~~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        132 AQASVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             HHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence            44567888887653  79999999999999999999986

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=95.56  E-value=0.022  Score=54.08  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          363 HRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |.+++..+.+.+... ..+++||.+|+|+|||.++-.++.++..
T Consensus         8 Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~   51 (184)
T PF04851_consen    8 QQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR   51 (184)
T ss_dssp             HHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence            567778888888776 5678999999999999999987777644

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.55  E-value=0.086  Score=52.59  Aligned_cols=56  Identities=7%  Similarity=0.261  Sum_probs=36.0

Q ss_pred             CeEEEEEccc-hhhHHHHHHHHHHHhccCC-CcEEEEEecCCccchHHHhhcceEeecc
Q 036742          461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTD-SCKLILCCEDDVDIIESVKTHCKVIKVD  517 (629)
Q Consensus       461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~-~~~~ILitN~~~~I~~aLrSR~~~I~F~  517 (629)
                      +.||+-||-- ++.++...-+.+++++... .+-++++|+ ...|....+.|+..+.-.
T Consensus       156 P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATH-d~~lv~~~~~rvl~l~~G  213 (223)
T COG2884         156 PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH-DLELVNRMRHRVLALEDG  213 (223)
T ss_pred             CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEec-cHHHHHhccCcEEEEeCC
Confidence            3499999974 4666666666677766554 344555555 445666777787765543

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.55  E-value=0.11  Score=52.28  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -+.|+||||||||+++..++...
T Consensus        21 i~~i~G~~GsGKT~l~~~l~~~~   43 (235)
T cd01123          21 ITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHe
Confidence            47899999999999999998653

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.55  E-value=0.065  Score=53.15  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLA  400 (629)
                      .++|.||.|+||||+.+.|+
T Consensus        30 ~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            48999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=95.55  E-value=0.24  Score=52.75  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +.|+|.||.|+|||.||..||+. .+
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~-~~   29 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKG-KA   29 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHh-CC
Confidence            35889999999999999999998 44

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.54  E-value=0.01  Score=57.46  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++++|+..+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998863

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.53  E-value=0.061  Score=56.10  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.|.+||||||++++|++.+
T Consensus        41 ~~glVGESG~GKSTlgr~i~~L~   63 (268)
T COG4608          41 TLGLVGESGCGKSTLGRLILGLE   63 (268)
T ss_pred             EEEEEecCCCCHHHHHHHHHcCc
Confidence            46799999999999999999875

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.53  E-value=0.12  Score=52.76  Aligned_cols=48  Identities=19%  Similarity=0.251  Sum_probs=30.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          382 ILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      .+|.||||+|||+++..+|-.+. |..+...      .........+++++..+.
T Consensus         4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~------~~~~~~~~~Vlyi~~Ed~   52 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALAMALGKNLFGG------GLKVTEPGRVVYLSAEDP   52 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHhcCccccCC------ccccCCCceEEEEECCCC
Confidence            57999999999999999987653 2221000      011223556788877543

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.53  E-value=0.0094  Score=57.71  Aligned_cols=25  Identities=40%  Similarity=0.565  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      |-+.|||||||||+|+.||..+ |..
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~-gl~   27 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHL-GLK   27 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHh-CCc
Confidence            5689999999999999999996 554

>cd01863 Rab18 Rab18 subfamily

Probab=95.52  E-value=0.16  Score=47.40  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      +++.|++|+|||+++.++...
T Consensus         3 i~v~G~~~~GKSsli~~l~~~   23 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=95.48  E-value=0.19  Score=51.07  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|+..++..
T Consensus         4 IvvvGd~~vGKTsLi~~~~~~   24 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAKD   24 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998864

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=95.47  E-value=0.091  Score=50.00  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|++.|++|+|||+|+..++.
T Consensus         4 ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           4 KIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999999875

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=95.47  E-value=0.31  Score=47.51  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=17.6

Q ss_pred             EcCCCCcHHHHHHHHHHHHhC
Q 036742          385 KGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       385 ~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .+.+||||||++.+|++. ++
T Consensus         5 IAtiGCGKTTva~aL~~L-Fg   24 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNL-FG   24 (168)
T ss_pred             ecCCCcCHHHHHHHHHHH-cC
Confidence            478999999999999986 46

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.46  E-value=0.022  Score=61.14  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...+.|..++..+  .++++.|++|+||||++++++.++
T Consensus       136 ~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        136 AQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             HHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence            3456677777754  479999999999999999999875

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=95.43  E-value=0.28  Score=48.24  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      +|+|.|.||+|||+++.+|+..
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~   23 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGR   23 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCC
Confidence            5899999999999999999864

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK04040 adenylate kinase; Provisional

Probab=95.42  E-value=0.012  Score=58.29  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+|+|||||||+++.++..+
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999987

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.39  E-value=0.19  Score=55.30  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||.|+||||++..+|..+.
T Consensus       208 ii~lvGptGvGKTTt~akLA~~l~  231 (407)
T PRK12726        208 IISLIGQTGVGKTTTLVKLGWQLL  231 (407)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998763

>cd04117 Rab15 Rab15 subfamily

Probab=95.39  E-value=0.11  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+++.|++|+|||+++..+..
T Consensus         2 ki~vvG~~~~GKTsli~~~~~   22 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTD   22 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            478999999999999987764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.37  E-value=0.013  Score=57.67  Aligned_cols=23  Identities=43%  Similarity=0.684  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999999984

>PRK06217 hypothetical protein; Validated

Probab=95.35  E-value=0.012  Score=57.43  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+||||+|++|++.+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999986

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.35  E-value=0.14  Score=57.01  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++..+|..+
T Consensus       225 vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.34  E-value=0.013  Score=56.03  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |.|+|++|||||||+++|+..
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999987

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.34  E-value=0.29  Score=54.56  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+||||++..||..+
T Consensus       193 vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        193 VYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999764

>PRK00279 adk adenylate kinase; Reviewed

Probab=95.34  E-value=0.013  Score=58.74  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|+||||+||||+|+.||..+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999986

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.34  E-value=0.051  Score=53.82  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          28 ALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.33  E-value=0.02  Score=62.02  Aligned_cols=38  Identities=29%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+..+.|..+++.+.  +||+.||+|+||||++++++..+
T Consensus       149 ~~~~~~l~~~v~~~~--nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        149 GDLEAFLHACVVGRL--TMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             HHHHHHHHHHHHcCC--eEEEECCCCccHHHHHHHHHccc
Confidence            444566667776544  79999999999999999999876

>PRK10263 DNA translocase FtsK; Provisional

Probab=95.31  E-value=0.15  Score=62.95  Aligned_cols=68  Identities=15%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             EEEEEccchhh----HHHHHHHHHHHhcc-CCCcEEEEEecCCcc--chHHHhhcc-eEeeccCCCHHHHHHHHHH
Q 036742          463 MIVIYEVDKAA----EHIQYLIKWIMDGY-TDSCKLILCCEDDVD--IIESVKTHC-KVIKVDPPVTHEIMEVLIQ  530 (629)
Q Consensus       463 VIIIDEID~Ls----~~~q~aLlrilEe~-~~~~~~ILitN~~~~--I~~aLrSR~-~~I~F~ppt~eei~~iL~~  530 (629)
                      ||||||+..|.    .+....|.++.... .-++.+|++|.++..  |...|+.-+ ..|-|.--+..+.+.||-.
T Consensus      1143 VVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263       1143 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred             EEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcCC
Confidence            99999997663    34445566665533 356778999998863  555566655 3566665566666666643

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.31  E-value=0.27  Score=54.20  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          364 RHEAQLLKELVVDG----NCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       364 e~~~~~Lk~~L~~g----~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++...+..|+...    +...+.|.||.|+||||+.--+|...
T Consensus       184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~  227 (407)
T COG1419         184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY  227 (407)
T ss_pred             HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            33444444444333    23468899999999998554455443

>TIGR01351 adk adenylate kinases

Probab=95.30  E-value=0.013  Score=58.55  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||||+||||+|+.||..+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999875

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	629
1sxj_E	354	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-17
1iqp_A	327	Crystal Structure Of The Clamp Loader Small Subunit		2e-16
2chg_A	226	Replication Factor C Domains 1 And 2 Length = 226		9e-15
2chq_A	319	Replication Factor C Adpnp Complex Length = 319		2e-14
1sxj_B	323	Crystal Structure Of The Eukaryotic Clamp Loader (R		5e-12
1sxj_D	353	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-09
1sxj_C	340	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-07
3u5z_B	324	Structure Of T4 Bacteriophage Clamp Loader Bound To		4e-06

>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 131/303 (43%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
            W DK++P SLN    +      LK L     + PH+L+ G +G+GK+   MALL  I+G
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
              +  K   +  V          V SS +H+E+   ++  N +  +  L+KE+      
Sbjct: 63  PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
                +D LA   +     ++I E +   +  Q  ++  M+ Y+ + +LI+ C+    II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
             +K+ C +I+   P   EI  +L  +   E   L +     +IA  +  NLR +++ LE
Sbjct: 179 APIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPK 620
           +  ALN   A     P+    W             + S   L+  R  +  LLA  +   
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
           +IL
Sbjct: 298 IIL 300

>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
           I++  V+EK  P W +K++P  L+  +   H  + LK  V  G+ PH+L  G  G GK  
Sbjct: 5   IREVKVLEK--P-WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTT 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
            A+AL  E++G     E W    L          ELN + +       + +++E     A
Sbjct: 62  AALALARELFG-----ENWRHNFL----------ELNASDERG-----INVIREKVKEFA 101
Query: 455 ITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
            T  +  A   +I + E D   +  Q  ++  M+ ++ + + IL C     IIE +++ C
Sbjct: 102 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
            + +  P    +I + L  IA  E  +L+      I   A+ ++R+AI  L+A  AL+  
Sbjct: 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 221
Query: 572 FADD 575
             D+
Sbjct: 222 ITDE 225

>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+  +      Q LK  V   N PH+L  G  G+GK A A+AL  +++G  
Sbjct: 7   WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
              E W            + +E+N + +       + +V+      A T  +  A   +I
Sbjct: 65  ---ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKII 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
            + E D      Q  ++  M+ Y+ SC+ IL C     IIE +++ C V +  P     +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
            + L++I  KE   ++      +   +  + RKAI AL+   A+ 
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211

>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+  +      Q LK  V   N PH+L  G  G+GK A A+AL  +++G  
Sbjct: 7   WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
              E W            + +E+N + +       + +V+      A T  +  A   +I
Sbjct: 65  ---ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKII 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
            + E D      Q  ++  M+ Y+ SC+ IL C     IIE +++ C V +  P     +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
            + L++I  KE   ++      +   +  + RKAI AL+   A+ 
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211

>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P  L+  + ++     L+++  DGN PH++I G  G GK      L HE+ G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
                +   VL   AS    +++  N            +K         P   + ++++ 
Sbjct: 69  ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++  M+ Y++S +    C     IIE +++ C +++       ++++ 
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
           L+QI + ED   +      I   A+ ++R+AI  L++  A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214

>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 7/224 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+      H   +LK+ +   N PH+L  G  G+GK +  +AL  E+YG  
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
              +   +++L   AS    + +      N  +A + + K  + +L   P     +I++ 
Sbjct: 86  ---DLMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++  M+ Y+   +  L C     II+ + + C   +         ++ 
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNY 570
           L  I+ +E+         +I   +  +LR+ I  L+ A K   Y
Sbjct: 201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244

>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 24/232 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+           +++ V +G  PH+L  G  G+GK +  +AL  EIYG  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
              + +   VL   AS    +++  N              +I+D  A T ++ +    +I
Sbjct: 73  ---KNYSNMVLELNASDDRGIDVVRN--------------QIKD-FASTRQIFSKGFKLI 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
           ++ E D      Q  ++ +++ YT + +  +       +  ++ + C   +  P     I
Sbjct: 115 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-LNYPFADD 575
              +  +   E   LS      +   +  ++R+ +  L++CKA L+ P  D+
Sbjct: 175 ERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDE 226

>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 40/227 (17%)
Query: 351 KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS-GSGKRALAMALLHEIYGDACW 409
           K++PS+++  I    + +  K +   G  PHI++   S G+GK  +A AL H++  D  +
Sbjct: 19  KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78
Query: 410 NEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMIVIY 467
                                      N     +  V+    N A          +IVI 
Sbjct: 79  --------------------------VNGSDCKIDFVRGPLTNFASAASFDGRQKVIVID 112
Query: 468 EVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
           E D++  AE  ++L +  M+ Y+ +C +I+   +   II+ +++ C+VI    P   + +
Sbjct: 113 EFDRSGLAESQRHL-RSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKI 171
Query: 526 EVLIQIARK-------EDFDLS-MTFAAKIATKAKQNLRKAIMALEA 564
           E++ Q+ R+       E   ++ M   A +  K   + RK I  L++
Sbjct: 172 EMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDS 218
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	1e-62
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	6e-42
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	1e-31
2chq_A	319	Replication factor C small subunit; DNA-binding pr	2e-22
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	3e-22
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	1e-21
2chg_A	226	Replication factor C small subunit; DNA-binding pr	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	3e-13
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	7e-09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	2e-04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	7e-04

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score =  210 bits (535), Expect = 1e-62
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 21/298 (7%)

Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVV-DGNCPHILIKGQSGSGKRALAMALLHEIYG 405
            W DK++P SLN    +      LK L     + PH+L+ G +G+GK+   MALL  I+G
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 406 DACWNEKWPTQ---------VLVPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAI 455
              +  K   +         + + V SS +H+E+   ++  N +  +  L+KE+     +
Sbjct: 63  PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122

Query: 456 TPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
             + S          ++I E +   +  Q  ++  M+ Y+ + +LI+ C+    II  +K
Sbjct: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182

Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKA 567
           + C +I+   P   EI  +L  +   E   L +     +IA  +  NLR +++ LE+   
Sbjct: 183 SQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242

Query: 568 LN-YPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
            N        PI    W  V+ +L  +I+ + S   L+  R  +  LLA  +   +IL
Sbjct: 243 NNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353

 Score =  154 bits (390), Expect = 6e-42
 Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 13/286 (4%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+      H   +LK+ +   N PH+L  G  G+GK +  +AL  E+YG  
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
               +    +L   AS    + +    ++  A+  +    K   +N    P     +I++
Sbjct: 87  LMKSR----ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPP---YKIIIL 139

Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
            E D      Q  ++  M+ Y+   +  L C     II+ + + C   +         ++
Sbjct: 140 DEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAID 199

Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG-WEEV 585
            L  I+ +E+         +I   +  +LR+ I  L++         D + I     EE+
Sbjct: 200 RLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEEL 259

Query: 586 LI----ELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627
                 ++  EI+          ++  +   +        ++  +H
Sbjct: 260 AGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLH 305

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score =  124 bits (313), Expect = 1e-31
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 24/269 (8%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P  L+  +   H  + LK  V  G+ PH+L  G  G GK   A+AL  E++G+ 
Sbjct: 15  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE- 73

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
                W    L   AS    + +               ++E     A T  +  A   +I
Sbjct: 74  ----NWRHNFLELNASDERGINV---------------IREKVKEFARTKPIGGASFKII 114

Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
            + E D   +  Q  ++  M+ ++ + + IL C     IIE +++ C + +  P    +I
Sbjct: 115 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 174

Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEE 584
            + L  IA  E  +L+      I   A+ ++R+AI  L+A  AL+    D+  + +    
Sbjct: 175 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDEN-VFMVASR 233

Query: 585 VLIELAAEILADPSPKRLVMVRGKIQKLL 613
              E   E++        +  R K++++L
Sbjct: 234 ARPEDIREMMLLALKGNFLKAREKLREIL 262

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 23/225 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+  +      Q LK  V   N PH+L  G  G+GK A A+AL  +++G+ 
Sbjct: 7   WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE- 65

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
                W    +   AS     E  ++           +V+      A T  +  A   +I
Sbjct: 66  ----NWRDNFIEMNASD----ERGID-----------VVRHKIKEFARTAPIGGAPFKII 106

Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
            + E D      Q  ++  M+ Y+ SC+ IL C     IIE +++ C V +  P     +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166

Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
            + L++I  KE   ++      +   +  + RKAI AL+   A+ 
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 23/224 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+           +++ V +G  PH+L  G  G+GK +  +AL  EIYG  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK- 73

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
                +   VL   AS     +  +++           V+    + A T ++ +    +I
Sbjct: 74  ----NYSNMVLELNASD----DRGIDV-----------VRNQIKDFASTRQIFSKGFKLI 114

Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
           ++ E D      Q  ++ +++ YT + +  +       +  ++ + C   +  P     I
Sbjct: 115 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 174

Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
              +  +   E   LS      +   +  ++R+ +  L++CKA 
Sbjct: 175 ERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT 218

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 34/231 (14%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P  L+  + ++     L+++  DGN PH++I G  G GK      L HE+ G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 69

Query: 408 CWNEKWPTQVLVPVASSAHHVELN---------VNLQANAKYALMGLVKEIRDNLAITPE 458
                +   VL          ELN         V  Q          +K         P 
Sbjct: 70  ----SYADGVL----------ELNASDDRGIDVVRNQ----------IKHFAQKKLHLPP 105

Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
             + ++++ E D      Q  ++  M+ Y++S +    C     IIE +++ C +++   
Sbjct: 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165

Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
               ++++ L+QI + ED   +      I   A+ ++R+AI  L++  A +
Sbjct: 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH 216

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 23/225 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+  +      Q LK  V   N PH+L  G  G+GK A A+AL  +++G+ 
Sbjct: 7   WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE- 65

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
                W    +   AS     E  ++           +V+      A T  +  A   +I
Sbjct: 66  ----NWRDNFIEMNASD----ERGID-----------VVRHKIKEFARTAPIGGAPFKII 106

Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
            + E D      Q  ++  M+ Y+ SC+ IL C     IIE +++ C V +  P     +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166

Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
            + L++I  KE   ++      +   +  + RKAI AL+   A+ 
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 89.1 bits (220), Expect = 2e-18
 Identities = 62/377 (16%), Positives = 113/377 (29%), Gaps = 99/377 (26%)

Query: 321 KSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEA-----QLLKELVV 375
           K+   + +     +I      E+    + D    +  N  +  R +      Q L EL  
Sbjct: 99  KTEQRQPSMMTRMYI------EQRDRLYNDNQVFAKYN--VS-RLQPYLKLRQALLELRP 149

Query: 376 DGNCPHILIKGQSGSGKRALAMALLH----------EIYGDACW----NEKWPTQVLVPV 421
             N   +LI G  GSGK  +A+ +            +I+    W    N   P  VL  +
Sbjct: 150 AKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEML 202

Query: 422 ASSAHHVELNVNLQANAKYALMGLVKEIRD---NLAITPEVSNAMIVIYEV-DKAAEHIQ 477
               + ++ N   +++    +   +  I+     L  +    N ++V+  V +       
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN------- 255

Query: 478 YLIKWIMDGYTDSCKLILCCEDDVDIIESVK----THCKVIKVDPPVTH-EIMEVLIQIA 532
                  + +  SCK IL       + + +     TH  +      +T  E+  +L++  
Sbjct: 256 ---AKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 533 RKEDFDL------------SMTFAAKIATKA-------KQNLRKAIMALEAC-KALNYP- 571
                DL            S+  A  I             N  K    +E+    L  P 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PA 369

Query: 572 -----------FADDQPIPLG-----WEEVLIELAAEILADPSPKRLVMVRGK-----IQ 610
                      F     IP       W +V+      ++       LV  + K     I 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 611 KLLAEFVHPKLILLVMH 627
            +  E          +H
Sbjct: 430 SIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 97/660 (14%), Positives = 195/660 (29%), Gaps = 153/660 (23%)

Query: 14  HSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLPRNISTSLSTSSVR 73
           H H      +++  Y+  D  + ++++   + + K   D+ D   +P++I   LS   + 
Sbjct: 4   HHHMDFETGEHQYQYK--DILSVFEDAFVDNFDCK---DVQD---MPKSI---LSKEEID 52

Query: 74  HALKI-DKDDR----FGSPPKFSSPARRRQSSKLSE------KPNYNRRAMTAPKLRPVL 122
           H +   D        F +          +Q   + +      + NY         ++   
Sbjct: 53  HIIMSKDAVSGTLRLFWT-------LLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQ 102

Query: 123 RDKEQENNHAIVGQKERI-TSASSLPRNPIRRQ------REVVSKFE-APTIGELNEMVA 174
           R          + Q++R+        +  + R       R+ + +   A  +  ++ ++ 
Sbjct: 103 RQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLG 160

Query: 175 SAKMFQGPITT-TNAALRFESTDSI--GDIF---FSRDG---------------FAKNGG 213
           S K      T                   IF                          N  
Sbjct: 161 SGK------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 214 VQADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPI------PPITPA------ 261
            ++D          R  S   E R    L +   P    L +           A      
Sbjct: 215 SRSDHSSNI---KLRIHSIQAELRR---L-LKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 262 NLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSK 321
            L+ +R      F S  + T  +    S + T          +  +     K   CR   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLLL--KYLDCRPQD 317

Query: 322 SSPEKRAFDETSFIQKAVVIEKLRPF---W-------ADKHQP---SSLNGFICHRHEAQ 368
              E      T+  + +++ E +R     W        DK      SSLN      +  +
Sbjct: 318 LPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-K 373

Query: 369 LLKELVV---DGNCPHILIK---GQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422
           +   L V     + P IL+             + +  LH+ Y      EK P +  +   
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLV---EKQPKESTI--- 426

Query: 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDK-AAEHIQY-LI 480
            S   + L + ++   +YAL    + I D+  I     +  ++   +D+    HI + L 
Sbjct: 427 -SIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 481 KWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP--VTHEIMEVLIQIARKEDF- 537
                      +++     D   +E      K+         +  I+  L Q+   + + 
Sbjct: 483 NIEHPERMTLFRMVFL---DFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 538 -DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWE-EVLIELAAEILA 595
            D    +   +       +   +  +E    +   + D   I L  E E + E A + + 
Sbjct: 535 CDNDPKYERLVNA-----ILDFLPKIEE-NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 56/364 (15%), Positives = 104/364 (28%), Gaps = 109/364 (29%)

Query: 331 ETSFIQ---KAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQ 387
           ET   Q   K ++      F  +         F C +    + K ++      HI++   
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDN---------FDC-KDVQDMPKSILSKEEIDHIIMSKD 59

Query: 388 SGSGKRALAMALL---HEIY----GDAC-----W-NEKWPTQVLVPVASSAHHVE----- 429
           + SG   L   LL    E+      +       +      T+   P   +  ++E     
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 430 LNVNLQANAKYAL--MGLVKEIRDNL-AITPEVSNAMIVIY------------EV---DK 471
            N N Q  AKY +  +    ++R  L  + P      ++I             +V    K
Sbjct: 120 YNDN-QVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 472 AAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI 531
               + + I W+             C     ++E ++     I  +     +    +   
Sbjct: 176 VQCKMDFKIFWLNLKN---------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL- 225

Query: 532 ARKEDFD--LSMTFAAKIATKAKQNL--------RKAIMALE-ACKAL------------ 568
            R       L     +K     +  L         KA  A   +CK L            
Sbjct: 226 -RIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 569 -----NYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKL--LAEFVHPKL 621
                 +   D   + L  +EV       +L     K L     + Q L       +P+ 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVK-----SLLL----KYLDC---RPQDLPREVLTTNPRR 329

Query: 622 ILLV 625
           + ++
Sbjct: 330 LSII 333

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 71.5 bits (175), Expect = 3e-13
 Identities = 47/281 (16%), Positives = 91/281 (32%), Gaps = 45/281 (16%)

Query: 312 MKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLK 371
           M         SS       E  F    +  +KL   W  K+ P++L     ++     LK
Sbjct: 1   MGSSHHHHHHSSGL-----EVLFQGPHMASDKL---WTVKYAPTNLQQVCGNKGSVMKLK 52

Query: 372 ELVVD-----------------GNCPHILIKGQSGSGKRALAMALLHEIYGDAC-WNEKW 413
             + +                 G     ++ G  G GK   A  +  E+  D    N   
Sbjct: 53  NWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN--- 109

Query: 414 PTQVLVPVAS---SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVD 470
                   AS   S   +   V    +   +++G  K   +  A      + +I++ EVD
Sbjct: 110 --------ASDVRSKTLLNAGVKNALDNM-SVVGYFKHNEE--AQNLNGKHFVIIMDEVD 158

Query: 471 KAAEHIQYLIKWIMDGYTDSCKLILC-CED-DVDIIESVKTHCKVIKVDPPVTHEIMEVL 528
             +   +  +  +      +   ++  C + ++  +      C  I+   P  + I   L
Sbjct: 159 GMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRL 218

Query: 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
           + IA +E F L      ++    + ++R+ I  L       
Sbjct: 219 MTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTT 259

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 47/237 (19%), Positives = 98/237 (41%), Gaps = 44/237 (18%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS-GSGKRALAMALLHEIYGD 406
              K++PS+++  I    + +  K +   G  PHI++   S G+GK  +A AL H++  D
Sbjct: 16  LEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD 75

Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-----AITPEVSN 461
                     ++    S     +  ++               +R  L     A + +   
Sbjct: 76  ----------MMFVNGS-----DCKIDF--------------VRGPLTNFASAASFDGRQ 106

Query: 462 AMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP- 519
            +IVI E D++     Q  ++  M+ Y+ +C +I+   +   II+ +++ C+VI    P 
Sbjct: 107 KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166

Query: 520 ------VTHEIMEVLIQIARKEDFDLSMTFA-AKIATKAKQNLRKAIMALEACKALN 569
                 +  +++  L +I + E   ++     A +  K   + RK I  L++  +  
Sbjct: 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKG 223

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 35/241 (14%)

Query: 353 QPSSLNGFICHRHE-----AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
            P  +   + HR +     A +L  L  +    +I I G +G+GK A+   +L +++   
Sbjct: 14  LPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73

Query: 408 ----------CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
                           P +VL  +  S       V     +   L   + +     A+  
Sbjct: 74  LGKFKHVYINTRQIDTPYRVLADLLESLDV---KVPFTGLSIAELYRRLVK-----AVRD 125

Query: 458 EVSNAMIVIYEVD----KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE----SVKT 509
             S  +IV+ E+D    K  + I Y +  I      S    +   +DV  ++     VK+
Sbjct: 126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKS 185

Query: 510 HC--KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA--KIATKAKQNLRKAIMALEAC 565
               + I   P    E+ ++L + A+       +        A  A +    A  AL+  
Sbjct: 186 SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLL 245

Query: 566 K 566
           +
Sbjct: 246 R 246

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 44/254 (17%)

Query: 340 VIEKLRPFWADKHQPSSLNGFICHRHE-----AQLLKELVVDGNCPHILIKGQSGSGKRA 394
           VI+  + F         +      R +     A  ++  V +      L  G +G+GK  
Sbjct: 5   VIKNPKVFIDPLSVFKEIP----FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTF 60

Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV-------- 446
           ++  + +EI      +E++                +N         A++  +        
Sbjct: 61  VSKYIFNEIEEVKKEDEEYK---------DVKQAYVNCREVGGTPQAVLSSLAGKLTGFS 111

Query: 447 --------KEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILC 496
                    E  D +        A+I + EVD   +      ++  ++    +   +++ 
Sbjct: 112 VPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMIS 171

Query: 497 CEDDV--DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-----FAAKIA 548
            + +V   +   V +     +   P    ++  +L + A       +       + A I+
Sbjct: 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231

Query: 549 TKAKQNLRKAIMAL 562
            K   + RKA+  L
Sbjct: 232 AKEHGDARKAVNLL 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	100.0
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.97
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.96
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.96
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.96
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.96
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.94
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.94
3pvs_A	447	Replication-associated recombination protein A; ma	99.93
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.92
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.9
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.89
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.89
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.87
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.87
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.87
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.86
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.85
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.83
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.83
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.83
3bos_A	242	Putative DNA replication factor; P-loop containing	99.83
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.83
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.82
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.82
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.82
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.82
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.82
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.81
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.81
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.81
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.8
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.8
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.8
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.79
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.79
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.78
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.78
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.76
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.74
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.73
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.73
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.73
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.72
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.71
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	99.7
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.69
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.68
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.68
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.68
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.67
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.66
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.66
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.66
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.65
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.65
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.65
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.65
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.63
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.61
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.6
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.6
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.59
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.59
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.55
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.55
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.54
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.54
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.52
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.49
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.49
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.38
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.35
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.3
3co5_A	143	Putative two-component system transcriptional RES	99.27
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.26
2fna_A	357	Conserved hypothetical protein; structural genomic	99.15
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.11
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.05
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.01
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.95
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.93
2qgz_A	308	Helicase loader, putative primosome component; str	98.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.87
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.82
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	98.72
3f8t_A	506	Predicted ATPase involved in replication control,	98.68
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.48
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.32
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.25
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.24
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.08
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.89
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.82
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.76
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.73
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.59
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.41
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.26
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.19
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.15
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.11
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.11
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.99
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	96.98
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.97
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.85
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.85
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.83
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.82
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.81
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	96.8
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.79
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.75
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.75
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.74
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.72
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.72
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.72
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.64
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.61
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.59
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.56
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.56
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.54
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.5
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.48
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.47
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.47
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	96.41
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.41
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.4
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	96.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.36
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.31
1via_A	175	Shikimate kinase; structural genomics, transferase	96.29
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	96.28
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.28
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.26
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.26
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	96.23
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.2
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.19
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.17
3b6e_A	216	Interferon-induced helicase C domain-containing P;	96.16
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.15
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.15
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.15
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.14
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.13
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.11
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	96.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.08
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.07
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.06
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.03
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.02
3h1t_A	590	Type I site-specific restriction-modification syst	95.99
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.98
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.98
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.98
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.96
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.93
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.91
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.9
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.88
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.87
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.87
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.87
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.83
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.81
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.81
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.79
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.79
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.75
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.75
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.74
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.74
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.73
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.73
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.72
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.7
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.68
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.68
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.67
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.66
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.64
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.63
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.61
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.57
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.57
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.55
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.52
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.49
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.48
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.48
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.45
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.44
3io5_A	333	Recombination and repair protein; storage dimer, i	95.44
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	95.43
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.43
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.42
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.42
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.4
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.39
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.35
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.35
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.31
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.29
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.27
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.26
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.25
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.24
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.2
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.2
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.19
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.18
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.18
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.14
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.14
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	95.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.08
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	95.08
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.07
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.05
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	95.04
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.01
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.99
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.99
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	94.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.97
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.96
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.93
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.93
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	94.91
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.9
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	94.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.86
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	94.85
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.85
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.82
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.81
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.8
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.76
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	94.74
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.73
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.71
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.63
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.57
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.57
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.56
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	94.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.53
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.52
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.52
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.46
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	94.46
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	94.45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.43
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.42
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.4
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.39
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.39
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.38
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.34
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.33
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.33
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.33
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.32
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.31
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.3
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.28
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.27
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.26
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.25
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.19
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.18
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.15
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.14
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.14
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.13
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.11
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.1
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.09
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.08
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.05
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.99
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.97
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.97
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	93.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.91
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.9
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.89
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.82
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.8
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	93.8
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	93.74
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.72
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.71
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.7
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.67
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.67
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.66
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.61
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	93.58
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.54
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	93.53
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.52
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	93.52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.51
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.5
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	93.49
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	93.48
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.45
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.44
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.39
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.34
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.33
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	93.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.26
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.25
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.24
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	93.23
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.22
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.18
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.08
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.03
3ice_A	422	Transcription termination factor RHO; transcriptio	93.02
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.02
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	92.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.94
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.93
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	92.92
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	92.89
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	92.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	92.8
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	92.73
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	92.72
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.68
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.66
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.62
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	92.62
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.58
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	92.58
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.47
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.43
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.41
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.36
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	92.35
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	92.34
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.3
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	92.26
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.26
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.24
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	92.23
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.2
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	92.2
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.17
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.04
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.03
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	91.98
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.96
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.9
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	91.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.71
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	91.7
2z43_A	324	DNA repair and recombination protein RADA; archaea	91.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	91.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	91.68
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.6
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.6
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.59
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	91.59
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	91.58
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.49
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	91.47
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	91.36
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	91.35
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	91.33
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	91.31
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.31
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.31
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	91.28
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	91.28
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	91.27
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	91.21
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.18
2og2_A	359	Putative signal recognition particle receptor; nuc	91.18
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	91.16
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	91.11
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.07
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.07
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	91.06
1b0u_A	262	Histidine permease; ABC transporter, transport pro	91.05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.02
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.99
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	90.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	90.97
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	90.96
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	90.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	90.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	90.86
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.85
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	90.85
1g6h_A	257	High-affinity branched-chain amino acid transport	90.81
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.8
1ji0_A	240	ABC transporter; ATP binding protein, structural g	90.76
2wji_A	165	Ferrous iron transport protein B homolog; membrane	90.69
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	90.69
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	90.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.63
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	90.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	90.57
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	90.51
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.5
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	90.45
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	90.38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	90.3
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	90.3
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	90.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.28
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	90.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	90.24
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.23
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	90.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	90.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.13
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.08
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	90.07
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	90.06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	90.06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	89.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	89.96
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	89.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	89.94
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	89.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.85

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=2.4e-32  Score=287.43  Aligned_cols=282  Identities=26%  Similarity=0.453  Sum_probs=219.8

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHH-HcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELV-VDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWPT  415 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L-~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~~  415 (629)
                      .+|++||+|.+|++++|++.+++.|+.++ ..+..+|++|+||+|+||||+++++++++.+.....         ..+..
T Consensus         2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~   81 (354)
T 1sxj_E            2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR   81 (354)
T ss_dssp             --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred             CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence            47999999999999999999999999999 888888999999999999999999999876543210         00111


Q ss_pred             cccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccC------c-CCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742          416 QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT------P-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY  487 (629)
Q Consensus       416 ~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~------~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~  487 (629)
                      +..+.......+++++++..... ...+.+.+.++.......      . ....+||||||++.|....+++|+++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~  161 (354)
T 1sxj_E           82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY  161 (354)
T ss_dssp             ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred             cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence            22333334455677776432211 111223333322211111      1 225679999999999999999999999999


Q ss_pred             CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          488 TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       488 ~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is-~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      ..++.||++|+.+..++++|++||..+.|.+|+.+++..+|..++.++++.++ ++++..|++.++||+|+++++|+.+.
T Consensus       162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~  241 (354)
T 1sxj_E          162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA  241 (354)
T ss_dssp             TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999 99999999999999999999999887


Q ss_pred             hcCC-CCCCCCCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          567 ALNY-PFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       567 ~~~~-~~~~~~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                      ..+. .+.....++ .+|+..+.+++..++.......+..++..+++++..+.++..|+..|+
T Consensus       242 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~  304 (354)
T 1sxj_E          242 LNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELT  304 (354)
T ss_dssp             HTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            7654 233222233 678888999999999888889999999999999999999999998875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.97  E-value=1.9e-29  Score=265.91  Aligned_cols=262  Identities=18%  Similarity=0.280  Sum_probs=204.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|++||+|.+|++++|++++++.|..++..|..+|+||+||||||||++|+++|+.+.+...               .
T Consensus        12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~---------------~   76 (340)
T 1sxj_C           12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY---------------S   76 (340)
T ss_dssp             CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH---------------H
T ss_pred             CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc---------------c
Confidence            5689999999999999999999999999999999999999999999999999999999876532               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      ..++++++++..+.. .+.+.++.+.+.... .....+|+||||+|.|+.+++++|++++|+++..+.||++||....++
T Consensus        77 ~~~~~~~~~~~~~~~-~ir~~i~~~~~~~~~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~  154 (340)
T 1sxj_C           77 NMVLELNASDDRGID-VVRNQIKDFASTRQI-FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT  154 (340)
T ss_dssp             HHEEEECTTSCCSHH-HHHTHHHHHHHBCCS-SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             ceEEEEcCcccccHH-HHHHHHHHHHhhccc-CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc
Confidence            236788886655542 222333332221111 112467999999999999999999999999999999999999999999


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW--  582 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~--  582 (629)
                      ++|++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|+++++|+.+............+...+  
T Consensus       155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~  234 (340)
T 1sxj_C          155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYE  234 (340)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHH
T ss_pred             hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987654322100011222222  


Q ss_pred             ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742          583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH  627 (629)
Q Consensus       583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La  627 (629)
                            ...+.++...+..++    +......+++++. .+.++..|+..|.
T Consensus       235 ~~~~~~~~~i~~l~~~i~~~~----~~~al~~l~~l~~~~g~~~~~i~~~l~  282 (340)
T 1sxj_C          235 CCGAPRPSDLKAVLKSILEDD----WGTAHYTLNKVRSAKGLALIDLIEGIV  282 (340)
T ss_dssp             HTTCCCHHHHHHHHHHHHTSC----HHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                  234455555554432    2345556777777 7888888887765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.96  E-value=3.8e-28  Score=250.96  Aligned_cols=258  Identities=26%  Similarity=0.406  Sum_probs=198.4

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ...+|+++|+|.+|++++|++++++.|..++..+..+++||+||||||||++|+++++.+.+...               
T Consensus        11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~---------------   75 (327)
T 1iqp_A           11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW---------------   75 (327)
T ss_dssp             TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred             cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc---------------
Confidence            45689999999999999999999999999999999999999999999999999999999865421               


Q ss_pred             CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      ...++++++.+..+.. .+.+.+.+..... .......+||||||+|.+....+++|+++++++...+.||++||.+..+
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l  153 (327)
T 1iqp_A           76 RHNFLELNASDERGIN-VIREKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI  153 (327)
T ss_dssp             HHHEEEEETTCHHHHH-TTHHHHHHHHHSC-CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             cCceEEeeccccCchH-HHHHHHHHHHhhC-CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence            1136778776544431 1122222222111 1111346799999999999999999999999999999999999999999


Q ss_pred             hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH-
Q 036742          504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW-  582 (629)
Q Consensus       504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~-  582 (629)
                      .+++++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+.+......+     ...++ 
T Consensus       154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i-----~~~~v~  228 (327)
T 1iqp_A          154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI-----TDENVF  228 (327)
T ss_dssp             CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEE-----CHHHHH
T ss_pred             CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC-----CHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999876533211     11111 


Q ss_pred             -------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HcCCCHHHHHHHHh
Q 036742          583 -------EEVLIELAAEILADPSPKRLVMVRGKIQKLL-AEFVHPKLILLVMH  627 (629)
Q Consensus       583 -------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL-~~~i~~~~i~~~La  627 (629)
                             ...+.+++..++.+.    +......+++++ ..+.++..|+..|.
T Consensus       229 ~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~~~~ll~~~g~~~~~i~~~l~  277 (327)
T 1iqp_A          229 MVASRARPEDIREMMLLALKGN----FLKAREKLREILLKQGLSGEDVLVQMH  277 (327)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                   223344444444432    233444566677 77888887776664

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.96  E-value=5e-28  Score=249.22  Aligned_cols=257  Identities=23%  Similarity=0.366  Sum_probs=198.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|+++|+|.+|++++|++.+++.|..++..+..+++||+||||||||++|+++++.+.+...               .
T Consensus         4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~---------------~   68 (319)
T 2chq_A            4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW---------------R   68 (319)
T ss_dssp             --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH---------------H
T ss_pred             cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc---------------c
Confidence            3589999999999999999999999999999998889999999999999999999999865431               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      ..++++++....+.. .+.+.+.+..... .......+||||||+|.+..+.++.|+++++.+...+.||++||....+.
T Consensus        69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~  146 (319)
T 2chq_A           69 DNFIEMNASDERGID-VVRHKIKEFARTA-PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII  146 (319)
T ss_dssp             HHCEEEETTSTTCTT-TSSHHHHHHHHSC-CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred             CCeEEEeCccccChH-HHHHHHHHHHhcC-CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence            135777776543321 1112223222111 11123467999999999999999999999999999999999999999999


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW--  582 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~--  582 (629)
                      ++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+...+.     .....++  
T Consensus       147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~-----~i~~~~v~~  221 (319)
T 2chq_A          147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-----VVDADTIYQ  221 (319)
T ss_dssp             HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS-----CBCHHHHHH
T ss_pred             hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998776422     1111222  


Q ss_pred             ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742          583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH  627 (629)
Q Consensus       583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La  627 (629)
                            ...+.++...+..++    +......+++++. .+.++..|+..|.
T Consensus       222 ~~~~~~~~~~~~l~~~~~~~~----~~~a~~~l~~l~~~~g~~~~~i~~~l~  269 (319)
T 2chq_A          222 ITATARPEEMTELIQTALKGN----FMEARELLDRLMVEYGMSGEDIVAQLF  269 (319)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                  223445555554432    2334445667776 7888888777664

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.96  E-value=1.7e-28  Score=255.95  Aligned_cols=199  Identities=22%  Similarity=0.392  Sum_probs=166.7

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ...+|++||+|.+|++++|++++++.|+.++..+..+++ ||+||||||||++|+++|+++ +..               
T Consensus        12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~---------------   75 (324)
T 3u61_B           12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-NAD---------------   75 (324)
T ss_dssp             TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEE---------------
T ss_pred             ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCC---------------
Confidence            356899999999999999999999999999999888765 667789999999999999987 322               


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                          +++++++... . ..+.+.+.+......  .....+||||||+|.+. .+.+++|+++++.+...+.||++||...
T Consensus        76 ----~~~i~~~~~~-~-~~i~~~~~~~~~~~~--~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~  147 (324)
T 3u61_B           76 ----MMFVNGSDCK-I-DFVRGPLTNFASAAS--FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID  147 (324)
T ss_dssp             ----EEEEETTTCC-H-HHHHTHHHHHHHBCC--CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred             ----EEEEcccccC-H-HHHHHHHHHHHhhcc--cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence                6888886543 2 122333333332211  12345799999999999 9999999999999989999999999999


Q ss_pred             cchHHHhhcceEeeccCCCHHH-------HHHHHHHHHHhcCCCCCH-HHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          502 DIIESVKTHCKVIKVDPPVTHE-------IMEVLIQIARKEDFDLSM-TFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~ee-------i~~iL~~i~~kegl~is~-e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      .++++|++||.++.|.+|+.++       +..++..++..+++.+++ ++++.|++.++||+|.+++.|+.+.
T Consensus       148 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~  220 (324)
T 3u61_B          148 GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS  220 (324)
T ss_dssp             GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred             ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            9999999999999999999877       456677778889999988 9999999999999999999999886

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.96  E-value=9.5e-28  Score=251.27  Aligned_cols=264  Identities=20%  Similarity=0.324  Sum_probs=196.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|+++|+|.+|++++|++++++.|..++..+..+++||+||||||||++|+++++.+.+...              ..
T Consensus        24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~--------------~~   89 (353)
T 1sxj_D           24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL--------------MK   89 (353)
T ss_dssp             --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH--------------HT
T ss_pred             CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc--------------cc
Confidence            4679999999999999999999999999999998889999999999999999999999754211              01


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhc---------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEE
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLA---------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL  495 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~---------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~IL  495 (629)
                      ..++++++.+..+.. .+.+.+........         .......+||||||+|.+....+++|+++++++...+.||+
T Consensus        90 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il  168 (353)
T 1sxj_D           90 SRILELNASDERGIS-IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL  168 (353)
T ss_dssp             TSEEEECSSSCCCHH-HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred             cceEEEccccccchH-HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE
Confidence            126778876544432 22222222222100         11123456999999999999999999999999988999999


Q ss_pred             EecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCC
Q 036742          496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD  575 (629)
Q Consensus       496 itN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~  575 (629)
                      +||.+..++++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.+.||+|.+++.|+.+......-...
T Consensus       169 ~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~  248 (353)
T 1sxj_D          169 ICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDG  248 (353)
T ss_dssp             EESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSC
T ss_pred             EeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999765432100000


Q ss_pred             -CCCchhHHHH--------HHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742          576 -QPIPLGWEEV--------LIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH  627 (629)
Q Consensus       576 -~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La  627 (629)
                       ..+..+++++        +.++...+..+. ..   ..+..+++++..+.++..|+..|.
T Consensus       249 ~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~-~~---~a~~~l~~l~~~g~~~~~i~~~l~  305 (353)
T 1sxj_D          249 KNITSTQVEELAGVVPHDILIEIVEKVKSGD-FD---EIKKYVNTFMKSGWSAASVVNQLH  305 (353)
T ss_dssp             CCCCHHHHHHHHTCCCSHHHHHHHHHHHSCC-HH---HHHHHHHHHHHTSCCCTTHHHHHH
T ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHhcCC-HH---HHHHHHHHHHHhCCCHHHHHHHHH
Confidence             2233444333        233343333222 22   233456677777888877776654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.96  E-value=3.4e-27  Score=243.43  Aligned_cols=254  Identities=20%  Similarity=0.327  Sum_probs=194.8

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|+++|+|.+|++++|++.+++.|..++..+..+++||+||+|+|||++|+++++.+.+...               .
T Consensus         8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~---------------~   72 (323)
T 1sxj_B            8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY---------------A   72 (323)
T ss_dssp             CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH---------------H
T ss_pred             cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc---------------c
Confidence            4689999999999999999999999999999999889999999999999999999999865421               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      ..++++++.+..+.     +.+++....+.    .......+||||||+|.+....+++|+++++++...+.||++||..
T Consensus        73 ~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~  147 (323)
T 1sxj_B           73 DGVLELNASDDRGI-----DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS  147 (323)
T ss_dssp             HHEEEECTTSCCSH-----HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred             CCEEEecCccccCh-----HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence            23677777654443     22333333332    1112336799999999999999999999999999999999999999


Q ss_pred             ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCch
Q 036742          501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL  580 (629)
Q Consensus       501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~  580 (629)
                      ..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+.....     .....
T Consensus       148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~-----~i~~~  222 (323)
T 1sxj_B          148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-----LVNAD  222 (323)
T ss_dssp             GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS-----SBCHH
T ss_pred             hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CcCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998764321     12223


Q ss_pred             hHHHHHH----HHHHHHhcCCChHHHHHHHHHHHH-HHHcCCCHHHHHHHH
Q 036742          581 GWEEVLI----ELAAEILADPSPKRLVMVRGKIQK-LLAEFVHPKLILLVM  626 (629)
Q Consensus       581 ~~ek~l~----ei~~~il~~~s~~~L~~ir~kly~-lL~~~i~~~~i~~~L  626 (629)
                      ++.+++.    .....++..   ..+......++. ++..+.++..++..|
T Consensus       223 ~v~~~~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l  270 (323)
T 1sxj_B          223 NVFKIVDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTS  270 (323)
T ss_dssp             HHHHHHTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3333321    111222222   122334444555 666677777776655

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.94  E-value=3.1e-25  Score=233.94  Aligned_cols=269  Identities=16%  Similarity=0.177  Sum_probs=197.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccc---c
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVL---V  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~---~  419 (629)
                      ..+|+++|+|.+|++++|++.+++.|..++..+..+| +||+||+|||||++|+++++.+.+..... ..+..|..   +
T Consensus         3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   82 (373)
T 1jr3_A            3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   82 (373)
T ss_dssp             CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred             cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence            3579999999999999999999999999999888776 68999999999999999999986543111 11111211   1


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++++++....+.     +.++++...+.... ...++||||||+|.+....++.|++++++++..+.+|++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~  157 (373)
T 1jr3_A           83 EQGRFVDLIEIDAASRTKV-----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT  157 (373)
T ss_dssp             HTSCCSSCEEEETTCSCCS-----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred             hccCCCceEEecccccCCH-----HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            1222334566665432221     12344444443332 23457999999999999999999999999989999999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI  578 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~  578 (629)
                      ....+.+++++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+...+.    +..+
T Consensus       158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~----~~i~  233 (373)
T 1jr3_A          158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD----GQVS  233 (373)
T ss_dssp             CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTT----TCBC
T ss_pred             ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC----Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999987655332    1222


Q ss_pred             chhHH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742          579 PLGWE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM  626 (629)
Q Consensus       579 ~~~~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L  626 (629)
                      ..+++        ..+.++...+..++. .   .+...+..++..+.++..++..|
T Consensus       234 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~g~~~~~~l~~l  285 (373)
T 1jr3_A          234 TQAVSAMLGTLDDDQALSLVEAMVEANG-E---RVMALINEAAARGIEWEALLVEM  285 (373)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHTCH-H---HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHcCCH-H---HHHHHHHHHHHhCcCHHHHHHHH
Confidence            22332        223445554444432 2   22334556666777776665544

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.94  E-value=2.6e-25  Score=214.63  Aligned_cols=208  Identities=26%  Similarity=0.446  Sum_probs=172.2

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|.++|+|..|++++|++.+++.|..++..+..++++|+||+|||||++|+++++.+.+...               .
T Consensus         4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------~   68 (226)
T 2chg_A            4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW---------------R   68 (226)
T ss_dssp             CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG---------------G
T ss_pred             hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccc---------------c
Confidence            3579999999999999999999999999999888888999999999999999999998754321               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      ..++.+++....+.. .+...+...... .......+.||||||+|.+....++.|+++++.....+.+|++||....+.
T Consensus        69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~  146 (226)
T 2chg_A           69 DNFIEMNASDERGID-VVRHKIKEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII  146 (226)
T ss_dssp             GGEEEEETTCTTCHH-HHHHHHHHHHTS-CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             cceEEeccccccChH-HHHHHHHHHhcc-cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcC
Confidence            125677765444332 122222222111 111123456999999999999999999999999888899999999999999


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN  569 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~  569 (629)
                      +++.+||..+.|.+++.+++..+|..++...++.++++++..|++.++||+|.+++.|+.+...+
T Consensus       147 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~  211 (226)
T 2chg_A          147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG  211 (226)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999889999999999999999999999999999887654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.93  E-value=2.2e-25  Score=244.79  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=183.6

Q ss_pred             CchhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+|+++|+|.+|++++|+++++   ..|..++..+..+++||+||||||||++|++|++.+. ..              
T Consensus        13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~-~~--------------   77 (447)
T 3pvs_A           13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN-AD--------------   77 (447)
T ss_dssp             -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT-CE--------------
T ss_pred             cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC-CC--------------
Confidence            36899999999999999999999   8899999999999999999999999999999999863 22              


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--  499 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--  499 (629)
                           ++.+++... +.. .+.+.+........   ...+.||||||||.+....++.|++.+|.  ..+.||++|+.  
T Consensus        78 -----f~~l~a~~~-~~~-~ir~~~~~a~~~~~---~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~  145 (447)
T 3pvs_A           78 -----VERISAVTS-GVK-EIREAIERARQNRN---AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENP  145 (447)
T ss_dssp             -----EEEEETTTC-CHH-HHHHHHHHHHHHHH---TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCG
T ss_pred             -----eEEEEeccC-CHH-HHHHHHHHHHHhhh---cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCc
Confidence                 466666432 211 22233333222211   23457999999999999999999999996  56778887744  


Q ss_pred             CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742          500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK-------EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF  572 (629)
Q Consensus       500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k-------egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~  572 (629)
                      ...+.++|.+||.++.|.+++.+++..+|.+++..       .++.++++++..|++.+.||+|.++++|+.+.......
T Consensus       146 ~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~  225 (447)
T 3pvs_A          146 SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD  225 (447)
T ss_dssp             GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBC
T ss_pred             ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc
Confidence            34689999999999999999999999999999886       56779999999999999999999999999877654311


Q ss_pred             --CCCCCCchhHHHHHH------------------HHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742          573 --ADDQPIPLGWEEVLI------------------ELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       573 --~~~~~~~~~~ek~l~------------------ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~  628 (629)
                        .....+..++++++.                  .+.+.+ .+..+.   .....+..++..+.+|..|+.+|..
T Consensus       226 ~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksi-rgsd~d---aAl~~la~ml~~Gedp~~i~rrl~~  297 (447)
T 3pvs_A          226 DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSV-RGSAPD---AALYWYARIITAGGDPLYVARRCLA  297 (447)
T ss_dssp             TTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHH-HTTCHH---HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             cCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHH-hCCCHH---HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence              111122233333332                  222221 222222   2345677899999999999998853

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.92  E-value=1.4e-23  Score=204.35  Aligned_cols=219  Identities=16%  Similarity=0.186  Sum_probs=170.2

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccc---cc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQV---LV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v---~~  419 (629)
                      ..+|.++|+|..|++++|++.+++.|..++..+..+ .++|+||+|+|||++|+++++.+....... ..+..+.   .+
T Consensus        10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (250)
T 1njg_A           10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   89 (250)
T ss_dssp             -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred             HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence            467999999999999999999999999999987765 589999999999999999999885432110 0000010   01


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      .......++.++.......     +.++++...+.... ...+.||||||+|.+....++.|++.++.....+.+|++|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~  164 (250)
T 1njg_A           90 EQGRFVDLIEIDAASRTKV-----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT  164 (250)
T ss_dssp             HTTCCSSEEEEETTCGGGH-----HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred             hccCCcceEEecCcccccH-----HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            1111123445544322221     23344444333222 23456999999999999999999999998888899999999


Q ss_pred             CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      ....+.+++.+||..+.|++++.+++.+++..++.+.++.++++++..|++.++|++|.++++++.+...
T Consensus       165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~  234 (250)
T 1njg_A          165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS  234 (250)
T ss_dssp             CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence            9989999999999999999999999999999999999999999999999999999999999999987654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.92  E-value=2.9e-24  Score=239.61  Aligned_cols=205  Identities=21%  Similarity=0.275  Sum_probs=161.0

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHc-----------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------------GNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ...++|++||+|.+|++|+|++.+++.|.+|+..                 +..+++||+||||||||++|+++|+++ +
T Consensus        24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~  102 (516)
T 1sxj_A           24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G  102 (516)
T ss_dssp             --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T
T ss_pred             ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C
Confidence            3467899999999999999999999999999974                 134689999999999999999999997 3


Q ss_pred             CCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHH------hcc-----CcCCCCeEEEEEccchhhH
Q 036742          406 DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN------LAI-----TPEVSNAMIVIYEVDKAAE  474 (629)
Q Consensus       406 ~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~------~~~-----~~~~~~kVIIIDEID~Ls~  474 (629)
                      ..                   +++++++...... .+...+.+....      +..     .....+.||||||+|.+..
T Consensus       103 ~~-------------------~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~  162 (516)
T 1sxj_A          103 YD-------------------ILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG  162 (516)
T ss_dssp             CE-------------------EEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred             CC-------------------EEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence            32                   6888887655432 222222211110      000     0123456999999999965


Q ss_pred             HH---HHHHHHHHhccCCCcEEEEEecCCc-cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742          475 HI---QYLIKWIMDGYTDSCKLILCCEDDV-DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK  550 (629)
Q Consensus       475 ~~---q~aLlrilEe~~~~~~~ILitN~~~-~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~  550 (629)
                      ..   .+.|+.+++.  ...+||++||... ..++++++||..+.|.+|+.+++.++|..++.++++.++++++..|++.
T Consensus       163 ~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~  240 (516)
T 1sxj_A          163 GDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT  240 (516)
T ss_dssp             TSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            43   4778888875  4677999998865 3567899999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCC
Q 036742          551 AKQNLRKAIMALEACKALNY  570 (629)
Q Consensus       551 s~GDiR~AInlLq~~~~~~~  570 (629)
                      +.||+|.++++|+.++..+.
T Consensus       241 s~GdiR~~i~~L~~~~~~~~  260 (516)
T 1sxj_A          241 TRGDIRQVINLLSTISTTTK  260 (516)
T ss_dssp             TTTCHHHHHHHHTHHHHHSS
T ss_pred             cCCcHHHHHHHHHHHHhcCC
Confidence            99999999999998776443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.90  E-value=2.8e-22  Score=209.80  Aligned_cols=192  Identities=18%  Similarity=0.229  Sum_probs=153.7

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...|.++|+|.+|++|+|++.+++.|..++..     ...+++||+||||||||++|+++|+.+.+.             
T Consensus        16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-------------   82 (338)
T 3pfi_A           16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-------------   82 (338)
T ss_dssp             -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-------------
T ss_pred             hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-------------
Confidence            45799999999999999999999999999873     345689999999999999999999986322             


Q ss_pred             cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCC----------
Q 036742          420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTD----------  489 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~----------  489 (629)
                             ++.+++......     ..+......     ...+.+|||||||.+....++.|++.++....          
T Consensus        83 -------~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~  145 (338)
T 3pfi_A           83 -------IKTTAAPMIEKS-----GDLAAILTN-----LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAA  145 (338)
T ss_dssp             -------EEEEEGGGCCSH-----HHHHHHHHT-----CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------C
T ss_pred             -------eEEecchhccch-----hHHHHHHHh-----ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccc
Confidence                   466666433222     112222221     23456999999999999999999999986531          


Q ss_pred             --------CcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742          490 --------SCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM  560 (629)
Q Consensus       490 --------~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn  560 (629)
                              .+.+|++||....+.++|++|| ..+.|.+|+.+++..++...+...++.++++++..|+..+.|++|.+.+
T Consensus       146 ~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~  225 (338)
T 3pfi_A          146 QTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALR  225 (338)
T ss_dssp             CCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHH
T ss_pred             cceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence                    2678999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 036742          561 ALEACK  566 (629)
Q Consensus       561 lLq~~~  566 (629)
                      +|+.+.
T Consensus       226 ~l~~~~  231 (338)
T 3pfi_A          226 LLKRVR  231 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.89  E-value=3.7e-22  Score=210.79  Aligned_cols=221  Identities=16%  Similarity=0.181  Sum_probs=157.1

Q ss_pred             hhhccCCCC-CCcccccHHHHHH---HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          348 WADKHQPSS-LNGFICHRHEAQL---LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       348 W~eKyrP~t-fddIiG~e~~~~~---Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      +.++++|.. |++|+|++.+++.   +..++..+..+  ++||+||||||||++|+++|+.+.+...             
T Consensus        33 l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-------------   99 (368)
T 3uk6_A           33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-------------   99 (368)
T ss_dssp             BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-------------
T ss_pred             cccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-------------
Confidence            558899998 9999999998766   55566676664  8999999999999999999999853211             


Q ss_pred             cCCcceEEEeccc--------------------------------------------------chh----hHHHHHHHHH
Q 036742          422 ASSAHHVELNVNL--------------------------------------------------QAN----AKYALMGLVK  447 (629)
Q Consensus       422 ~sS~~vleInas~--------------------------------------------------~~~----~k~~l~~~lr  447 (629)
                           ++.+++..                                                  ..+    ....+.+.+.
T Consensus       100 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  174 (368)
T 3uk6_A          100 -----FTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN  174 (368)
T ss_dssp             -----EEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHH
T ss_pred             -----cccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHH
Confidence                 11111100                                                  000    0011122222


Q ss_pred             HHHHHhccCc--CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec------------CCccchHHHhhcceE
Q 036742          448 EIRDNLAITP--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE------------DDVDIIESVKTHCKV  513 (629)
Q Consensus       448 ei~~~~~~~~--~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN------------~~~~I~~aLrSR~~~  513 (629)
                      .....+....  ...++||||||+|.|..+.++.|+++++++...+ +|++++            .+..++++|++||..
T Consensus       175 ~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~  253 (368)
T 3uk6_A          175 AKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI  253 (368)
T ss_dssp             HHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE
T ss_pred             HHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccE
Confidence            2222111111  1123599999999999999999999999876553 444554            255688999999999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Q 036742          514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK-QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI  587 (629)
Q Consensus       514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~-GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~  587 (629)
                      +.|++|+.+++..+|..++..+++.++++++..|++.+. |++|.++++|+.+...+...........++++++.
T Consensus       254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~  328 (368)
T 3uk6_A          254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS  328 (368)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999 99999999999866544322233344455555543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.89  E-value=3.1e-22  Score=211.09  Aligned_cols=193  Identities=12%  Similarity=0.127  Sum_probs=155.7

Q ss_pred             ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccc---cccCCcceEEEecc---
Q 036742          362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLV---PVASSAHHVELNVN---  433 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~---~i~sS~~vleInas---  433 (629)
                      .++++.+.|...++.|+.+| +||+||+|+|||++|+++|+.+.|..... ..+..|..|   .......+.++++.   
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~   85 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK   85 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence            36888899999999999887 89999999999999999999997754211 112222222   22234557777764   


Q ss_pred             cchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcce
Q 036742          434 LQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK  512 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~  512 (629)
                      ...++     +.++++.+.+...+ .+..+||||||+|.|+.+++++|++++|+++.++.||++|+.+..++++|+|||.
T Consensus        86 ~~~~i-----~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~  160 (334)
T 1a5t_A           86 NTLGV-----DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR  160 (334)
T ss_dssp             SSBCH-----HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             CCCCH-----HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence            22332     45566666665544 3456899999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       513 ~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                      .+.|.+++.+++.++|..++     .++++++..+++.++||+|.|+++|+.
T Consensus       161 ~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~  207 (334)
T 1a5t_A          161 LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQG  207 (334)
T ss_dssp             EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred             eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            99999999999999998764     678999999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.87  E-value=4.4e-21  Score=198.80  Aligned_cols=194  Identities=16%  Similarity=0.168  Sum_probs=153.9

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      +|.++|+|.+|++++|++.+++.|..++..     ....++||+||||||||++|+++++.+...               
T Consensus         1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---------------   65 (324)
T 1hqc_A            1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---------------   65 (324)
T ss_dssp             ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---------------
T ss_pred             CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence            467899999999999999999988888862     344689999999999999999999987322               


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------  488 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------  488 (629)
                           ++.+++.......    ++.    ..+.. ....+.+|||||+|.+....++.|+++++...             
T Consensus        66 -----~~~~~~~~~~~~~----~l~----~~l~~-~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~  131 (324)
T 1hqc_A           66 -----LRVTSGPAIEKPG----DLA----AILAN-SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAART  131 (324)
T ss_dssp             -----EEEECTTTCCSHH----HHH----HHHTT-TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCC
T ss_pred             -----EEEEeccccCChH----HHH----HHHHH-hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccc
Confidence                 4555554322211    111    11111 11245699999999999999999999998643             


Q ss_pred             -----CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          489 -----DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       489 -----~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                           ..+.+|++||....+.++|.+|| .++.|.+|+.+++..+|...+...++.++++++..|+..+.|++|.+.+++
T Consensus       132 ~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l  211 (324)
T 1hqc_A          132 IRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF  211 (324)
T ss_dssp             EEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred             cccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence                 34678999999999999999999 699999999999999999999988999999999999999999999999999


Q ss_pred             HHHHhcC
Q 036742          563 EACKALN  569 (629)
Q Consensus       563 q~~~~~~  569 (629)
                      +.+....
T Consensus       212 ~~~~~~a  218 (324)
T 1hqc_A          212 RRVRDFA  218 (324)
T ss_dssp             HHHTTTS
T ss_pred             HHHHHHH
Confidence            8875443

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.87  E-value=2.1e-21  Score=203.18  Aligned_cols=173  Identities=14%  Similarity=0.216  Sum_probs=140.7

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc-chhhHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL-QANAKY  440 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~-~~~~k~  440 (629)
                      ||+++++.|+..++.+..+++|||||||+|||++|+++|+.+. . +           . .....+++++++. ..++  
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~-~-~-----------~-~~~~d~~~l~~~~~~~~i--   64 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE-K-F-----------P-PKASDVLEIDPEGENIGI--   64 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH-T-S-----------C-CCTTTEEEECCSSSCBCH--
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc-h-h-----------h-ccCCCEEEEcCCcCCCCH--
Confidence            7889999999999998877899999999999999999998742 1 1           0 0233478888753 4443  


Q ss_pred             HHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCC
Q 036742          441 ALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP  519 (629)
Q Consensus       441 ~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~pp  519 (629)
                         +.++++...+...+. +..+||||||+|.|+..++++|++++|+++..+.||++|+.+.++.++|+||  ++.|.++
T Consensus        65 ---d~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l  139 (305)
T 2gno_A           65 ---DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN  139 (305)
T ss_dssp             ---HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred             ---HHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence               456666666655443 4568999999999999999999999999999999999999999999999999  9999999


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       520 t~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                      +.+++.++|..++   +  ++++.+    ..+.||+|.|+++|+.
T Consensus       140 ~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~  175 (305)
T 2gno_A          140 VPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL  175 (305)
T ss_dssp             CCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence            9999999999887   2  455554    5579999999999864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.87  E-value=4.4e-21  Score=210.67  Aligned_cols=123  Identities=14%  Similarity=0.125  Sum_probs=104.4

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC-------------CccchHHHhhcceEeeccCCCHHHHHHHH
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-------------DVDIIESVKTHCKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL  528 (629)
                      +|+||||+|.|+.+++++|++++|+++.. .|||+||.             +..++++|+|||..+.|.+|+.+++.++|
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL  375 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII  375 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence            59999999999999999999999999887 57778843             56689999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH
Q 036742          529 IQIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALNYPFADDQPIPLGWEEV  585 (629)
Q Consensus       529 ~~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~  585 (629)
                      ..++..+++.++++++..|+..+ .|++|.|+++|+.+...++....+..++.++.++
T Consensus       376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~  433 (456)
T 2c9o_A          376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI  433 (456)
T ss_dssp             HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence            99999999999999999999999 9999999999998755443323344444444433

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.86  E-value=4.5e-21  Score=206.01  Aligned_cols=199  Identities=18%  Similarity=0.174  Sum_probs=150.0

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN  410 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~  410 (629)
                      ....-|+++|+|.+|++|+|++.+++.|.+++.            .....++||+||||||||++|++||.++ +..   
T Consensus       100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-~~~---  175 (389)
T 3vfd_A          100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-NAT---  175 (389)
T ss_dssp             TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-TCE---
T ss_pred             HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-cCc---
Confidence            344569999999999999999999999998883            1224589999999999999999999986 332   


Q ss_pred             CCCCccccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHH
Q 036742          411 EKWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQY  478 (629)
Q Consensus       411 ~~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~  478 (629)
                                      ++++++....+.. ......++.+....   ......||||||||.|           ....++
T Consensus       176 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a---~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~  236 (389)
T 3vfd_A          176 ----------------FFNISAASLTSKYVGEGEKLVRALFAVA---RELQPSIIFIDQVDSLLCERREGEHDASRRLKT  236 (389)
T ss_dssp             ----------------EEEECSCCC-------CHHHHHHHHHHH---HHSSSEEEEEETGGGGC--------CTHHHHHH
T ss_pred             ----------------EEEeeHHHhhccccchHHHHHHHHHHHH---HhcCCeEEEEECchhhcccCCCccchHHHHHHH
Confidence                            5667664322110 00011222222211   1223469999999998           345566


Q ss_pred             HHHHHHhcc----CCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          479 LIKWIMDGY----TDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       479 aLlrilEe~----~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      .|+..++..    ...+.||++||.++.+++++++||. .+.|..|+.+++..+|..++.+.++.++++.+..|+..+.|
T Consensus       237 ~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g  316 (389)
T 3vfd_A          237 EFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG  316 (389)
T ss_dssp             HHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTT
T ss_pred             HHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence            777777643    3457788899999999999999995 79999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHH
Q 036742          554 NLRKAIMALEA  564 (629)
Q Consensus       554 DiR~AInlLq~  564 (629)
                      +.+..|..|..
T Consensus       317 ~~~~~l~~L~~  327 (389)
T 3vfd_A          317 YSGSDLTALAK  327 (389)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            98887766643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.6e-20  Score=201.11  Aligned_cols=213  Identities=16%  Similarity=0.177  Sum_probs=144.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      ++-...+|+||+|.+++++.|++++.           -|.  ..++|||||||||||++|+++|+++ +..         
T Consensus       140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-~~~---------  209 (405)
T 4b4t_J          140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-DCK---------  209 (405)
T ss_dssp             ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-TCE---------
T ss_pred             cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-CCC---------
Confidence            33445678999999999999998884           122  3489999999999999999999997 333         


Q ss_pred             ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742          417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY  478 (629)
Q Consensus       417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~  478 (629)
                                ++.++++.    +.|..   ...+++   .|..+....++||||||+|.+..              ...+
T Consensus       210 ----------f~~v~~s~l~sk~vGes---e~~vr~---lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~  273 (405)
T 4b4t_J          210 ----------FIRVSGAELVQKYIGEG---SRMVRE---LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTML  273 (405)
T ss_dssp             ----------EEEEEGGGGSCSSTTHH---HHHHHH---HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHH
T ss_pred             ----------ceEEEhHHhhccccchH---HHHHHH---HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHH
Confidence                      45666532    22221   122333   33333344568999999999831              2345


Q ss_pred             HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      .|+..|+.+.  ..+.||++||.++.|+++|++  |+ ..|.|+.|+.++..++|+.++.+..+. ++..+..|++.+.|
T Consensus       274 ~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G  352 (405)
T 4b4t_J          274 ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNG  352 (405)
T ss_dssp             HHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCS
T ss_pred             HHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCC
Confidence            5666666443  456788899999999999998  77 589999999999999998887664432 22248889998876


Q ss_pred             ----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742          554 ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE  592 (629)
Q Consensus       554 ----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~  592 (629)
                          |++.+++-.-..+...   ........+++.++.++...
T Consensus       353 ~SGADi~~l~~eA~~~Air~---~~~~vt~~Df~~Al~~v~~~  392 (405)
T 4b4t_J          353 CSGADVKGVCTEAGMYALRE---RRIHVTQEDFELAVGKVMNK  392 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHT---TCSBCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCc
Confidence                5554443322222221   12223446777777776654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.83  E-value=6.4e-20  Score=192.17  Aligned_cols=182  Identities=15%  Similarity=0.127  Sum_probs=140.0

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHH----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVV----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW  413 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~  413 (629)
                      ..|..++.+.+|++|+|++.+++.|++++.          .+  ...++||+||||||||++|++||+++ +..      
T Consensus         6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~------   78 (322)
T 3eie_A            6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-NST------   78 (322)
T ss_dssp             CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-TCE------
T ss_pred             cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-CCC------
Confidence            347789999999999999999999999883          12  23479999999999999999999997 332      


Q ss_pred             CccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHH
Q 036742          414 PTQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQY  478 (629)
Q Consensus       414 ~~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~  478 (629)
                                   ++.+++...    .+.   ....++.+....   ....++||||||||.|..           ..++
T Consensus        79 -------------~~~v~~~~l~~~~~g~---~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~  139 (322)
T 3eie_A           79 -------------FFSVSSSDLVSKWMGE---SEKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKT  139 (322)
T ss_dssp             -------------EEEEEHHHHHTTTGGG---HHHHHHHHHHHH---HHTSSEEEEEECGGGGSCC------CCTHHHHH
T ss_pred             -------------EEEEchHHHhhcccch---HHHHHHHHHHHH---HhcCCeEEEechhhhhhccCCCCcchHHHHHHH
Confidence                         566766421    111   112222222221   123457999999999843           3466


Q ss_pred             HHHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          479 LIKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       479 aLlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      .|+..++..   ...+.||++||.++.++++|++|| ..+.|+.|+.++..++|+.++.+.+..++++.+..|++.+.|
T Consensus       140 ~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g  218 (322)
T 3eie_A          140 ELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG  218 (322)
T ss_dssp             HHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred             HHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence            777777643   456778889999999999999999 578899999999999999999888888899999999999887

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.83  E-value=2.5e-19  Score=188.83  Aligned_cols=194  Identities=16%  Similarity=0.213  Sum_probs=146.3

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcC-----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDG-----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g-----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      ...+.|+++++|.+|++++|++.+++.|..++..+     ...+++|+|||||||||+|++||+++.+.           
T Consensus        10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-----------   78 (334)
T 1in4_A           10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----------   78 (334)
T ss_dssp             -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----------
T ss_pred             HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----------
Confidence            34567899999999999999999999998888643     34689999999999999999999997432           


Q ss_pred             cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---------
Q 036742          418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------  488 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------  488 (629)
                               +...+........     .+.......     ....|+||||++.+....++.|+..++.+.         
T Consensus        79 ---------~~~~sg~~~~~~~-----~l~~~~~~~-----~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~  139 (334)
T 1in4_A           79 ---------IHVTSGPVLVKQG-----DMAAILTSL-----ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGP  139 (334)
T ss_dssp             ---------EEEEETTTCCSHH-----HHHHHHHHC-----CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------
T ss_pred             ---------EEEEechHhcCHH-----HHHHHHHHc-----cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCc
Confidence                     1112221111111     111111111     234699999999998888888887776542         


Q ss_pred             ---------CCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742          489 ---------DSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA  558 (629)
Q Consensus       489 ---------~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A  558 (629)
                               ..+.++.+++.+..+..++++||. .+.|.+++.+++.++|.+++...++.++++++..|++.+.|++|.+
T Consensus       140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a  219 (334)
T 1in4_A          140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA  219 (334)
T ss_dssp             ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred             ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence                     124566788888899999999995 6889999999999999999998899999999999999999999999


Q ss_pred             HHHHHHHH
Q 036742          559 IMALEACK  566 (629)
Q Consensus       559 InlLq~~~  566 (629)
                      +++|+.+.
T Consensus       220 ~~ll~~~~  227 (334)
T 1in4_A          220 IRLTKRVR  227 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.83  E-value=5.4e-20  Score=195.89  Aligned_cols=188  Identities=15%  Similarity=0.112  Sum_probs=132.5

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHH----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWN  410 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~  410 (629)
                      .+...|..++.+.+|+||+|++.+++.|++++.          .  ....++||+||||||||++|++||+++. ..   
T Consensus        36 ~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---  111 (355)
T 2qp9_X           36 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-ST---  111 (355)
T ss_dssp             -----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT-CE---
T ss_pred             HHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-CC---
Confidence            344567788999999999999999999998873          1  1234799999999999999999999973 32   


Q ss_pred             CCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHH
Q 036742          411 EKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQY  478 (629)
Q Consensus       411 ~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~  478 (629)
                                      ++.+++...... .......++.+....   ....++||||||||.|..           ..++
T Consensus       112 ----------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~  172 (355)
T 2qp9_X          112 ----------------FFSVSSSDLVSKWMGESEKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKT  172 (355)
T ss_dssp             ----------------EEEEEHHHHHSCC---CHHHHHHHHHHH---HHTSSEEEEEECGGGGTC------CTHHHHHHH
T ss_pred             ----------------EEEeeHHHHhhhhcchHHHHHHHHHHHH---HHcCCeEEEEechHhhcccCCCCcchHHHHHHH
Confidence                            455665321100 000112222222211   123457999999999852           3466


Q ss_pred             HHHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          479 LIKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       479 aLlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      .|+..++..   ...+.||++||.++.++++|++|| ..+.|+.|+.+++..+|..++...++.+++..+..|++.+.|
T Consensus       173 ~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G  251 (355)
T 2qp9_X          173 ELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG  251 (355)
T ss_dssp             HHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred             HHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence            777777643   356778889999999999999999 678999999999999999999888777899999999999988

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.83  E-value=6.6e-20  Score=188.41  Aligned_cols=191  Identities=17%  Similarity=0.175  Sum_probs=144.8

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW  413 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~  413 (629)
                      ..|.++|++.+|++|+|++.+++.|.+++..            ....++||+||||||||++|+++|+++. ..      
T Consensus         9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-~~------   81 (297)
T 3b9p_A            9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-AT------   81 (297)
T ss_dssp             TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT-CE------
T ss_pred             HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC-CC------
Confidence            4588999999999999999999999988842            1345899999999999999999999863 22      


Q ss_pred             CccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHH
Q 036742          414 PTQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQY  478 (629)
Q Consensus       414 ~~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~  478 (629)
                                   ++.+++...    .+..   ...++.+.....   ...++||||||+|.+.           ...++
T Consensus        82 -------------~~~i~~~~l~~~~~~~~---~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~  142 (297)
T 3b9p_A           82 -------------FLNISAASLTSKYVGDG---EKLVRALFAVAR---HMQPSIIFIDEVDSLLSERSSSEHEASRRLKT  142 (297)
T ss_dssp             -------------EEEEESTTTSSSSCSCH---HHHHHHHHHHHH---HTCSEEEEEETGGGTSBCC-----CCSHHHHH
T ss_pred             -------------eEEeeHHHHhhcccchH---HHHHHHHHHHHH---HcCCcEEEeccHHHhccccccCcchHHHHHHH
Confidence                         455555321    1111   122222222111   2345799999999983           34566


Q ss_pred             HHHHHHhccC-----CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Q 036742          479 LIKWIMDGYT-----DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK  552 (629)
Q Consensus       479 aLlrilEe~~-----~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~  552 (629)
                      .|+..++...     ..+.||++||.++.+++++++|| ..+.|+.|+.++...++..++.+.+..++++.+..|+..+.
T Consensus       143 ~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~  222 (297)
T 3b9p_A          143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD  222 (297)
T ss_dssp             HHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTT
T ss_pred             HHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence            6777777654     34678889999999999999999 57888999999999999999988888899999999999999


Q ss_pred             CCHHHHHHHH
Q 036742          553 QNLRKAIMAL  562 (629)
Q Consensus       553 GDiR~AInlL  562 (629)
                      |..+..+..|
T Consensus       223 g~~~~~l~~l  232 (297)
T 3b9p_A          223 GYSGSDLTAL  232 (297)
T ss_dssp             TCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9888766443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.83  E-value=1.7e-19  Score=177.29  Aligned_cols=194  Identities=13%  Similarity=0.128  Sum_probs=150.2

Q ss_pred             chhhhccCC-CCCCcccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          346 PFWADKHQP-SSLNGFIC---HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       346 ~lW~eKyrP-~tfddIiG---~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      .+|..+++| .+|++++|   ++.+++.|..++..+..++++|+||||||||++|+++++++.....             
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~-------------   81 (242)
T 3bos_A           15 LSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELER-------------   81 (242)
T ss_dssp             CEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------
T ss_pred             cCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence            468899998 89999996   4688899999998777779999999999999999999998754321             


Q ss_pred             cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH--HHHHHHHHhccCC-Cc-EEEEEe
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI--QYLIKWIMDGYTD-SC-KLILCC  497 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~--q~aLlrilEe~~~-~~-~~ILit  497 (629)
                          .++++++......       +.+...     ......||||||+|.+....  ++.|..+++.... .. .+|++|
T Consensus        82 ----~~~~~~~~~~~~~-------~~~~~~-----~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~  145 (242)
T 3bos_A           82 ----RSFYIPLGIHASI-------STALLE-----GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSA  145 (242)
T ss_dssp             ----CEEEEEGGGGGGS-------CGGGGT-----TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             ----eEEEEEHHHHHHH-------HHHHHH-----hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEc
Confidence                1556665432110       000000     11234699999999996544  7777777664332 22 588888


Q ss_pred             cCCc----cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          498 EDDV----DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       498 N~~~----~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      +...    .+++++.+||   ..+.|.+|+.+++.++|..++...++.+++++++.|++.+.||+|.++++|+.+...
T Consensus       146 ~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~  223 (242)
T 3bos_A          146 SASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA  223 (242)
T ss_dssp             SSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            8654    3569999999   899999999999999999999999999999999999999999999999999876543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=8e-20  Score=198.23  Aligned_cols=213  Identities=15%  Similarity=0.151  Sum_probs=142.7

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      ++-...+|+||+|.+++++.|++.+.           .|  ...++|||||||||||++|++||.++ +..         
T Consensus       174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~---------  243 (437)
T 4b4t_I          174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-SAT---------  243 (437)
T ss_dssp             ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-TCE---------
T ss_pred             ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-CCC---------
Confidence            44455678999999999999998874           12  23489999999999999999999997 333         


Q ss_pred             ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742          417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY  478 (629)
Q Consensus       417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~  478 (629)
                                ++.++.+.    +.+..   ...++.+   |.......++||||||+|.+..              ....
T Consensus       244 ----------fi~v~~s~l~sk~vGes---ek~ir~l---F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~  307 (437)
T 4b4t_I          244 ----------FLRIVGSELIQKYLGDG---PRLCRQI---FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML  307 (437)
T ss_dssp             ----------EEEEESGGGCCSSSSHH---HHHHHHH---HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHH
T ss_pred             ----------EEEEEHHHhhhccCchH---HHHHHHH---HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHH
Confidence                      45555532    22221   1223332   2223334568999999998821              2334


Q ss_pred             HHHHHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcc
Q 036742          479 LIKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAK  552 (629)
Q Consensus       479 aLlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~  552 (629)
                      .|+..++..  ..++.||++||.++.|+++|++  |+ ..|.|+.|+.++..++|+.++.+..+  +++ .++.||+.+.
T Consensus       308 ~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvdl~~LA~~T~  385 (437)
T 4b4t_I          308 ELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVNLETLVTTKD  385 (437)
T ss_dssp             HHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCCHHHHHHHCC
T ss_pred             HHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCC
Confidence            455555543  3556789999999999999998  77 46999999999999999888766443  333 4788898877


Q ss_pred             C----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 036742          553 Q----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEI  593 (629)
Q Consensus       553 G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~i  593 (629)
                      |    ||+.+++..-..+..   .........++++++..+....
T Consensus       386 GfSGADI~~l~~eA~~~Air---~~~~~It~eDf~~Al~rv~~~~  427 (437)
T 4b4t_I          386 DLSGADIQAMCTEAGLLALR---ERRMQVTAEDFKQAKERVMKNK  427 (437)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH---TTCSCBCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH---cCCCccCHHHHHHHHHHHhCCC
Confidence            6    555444332222222   1222344467777777766543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.82  E-value=1.4e-19  Score=186.47  Aligned_cols=191  Identities=14%  Similarity=0.155  Sum_probs=145.9

Q ss_pred             CcccccHHHHHHHHHHHH---------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          358 NGFICHRHEAQLLKELVV---------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~---------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+|+|++.+++.|.+++.               .....++||+||||||||++|+++|+.+.....             .
T Consensus        31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~-------------~   97 (309)
T 3syl_A           31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY-------------V   97 (309)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS-------------S
T ss_pred             HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-------------c
Confidence            479999999999988775               223347999999999999999999999854322             1


Q ss_pred             CCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742          423 SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK  492 (629)
Q Consensus       423 sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~  492 (629)
                      ....++++++....+. .......+.......      .+.||||||+|.+         ....++.|+.+++.....+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  171 (309)
T 3syl_A           98 RKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV  171 (309)
T ss_dssp             SSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred             CCCcEEEEcHHHhhhhcccccHHHHHHHHHhc------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence            2233667766422110 000011222222222      2359999999988         78899999999999888899


Q ss_pred             EEEEecCCc-----cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc--------cCCHHHH
Q 036742          493 LILCCEDDV-----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA--------KQNLRKA  558 (629)
Q Consensus       493 ~ILitN~~~-----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s--------~GDiR~A  558 (629)
                      ||+++|...     .++++|++|| ..+.|++|+.+++..++..++.+.++.++++++..++..+        .||+|.+
T Consensus       172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l  251 (309)
T 3syl_A          172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSI  251 (309)
T ss_dssp             EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred             EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence            999997643     2468999999 8999999999999999999999999999999999999874        4999999


Q ss_pred             HHHHHHHHh
Q 036742          559 IMALEACKA  567 (629)
Q Consensus       559 InlLq~~~~  567 (629)
                      .++|+.+..
T Consensus       252 ~~~l~~a~~  260 (309)
T 3syl_A          252 RNALDRARL  260 (309)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.82  E-value=3.1e-19  Score=189.90  Aligned_cols=191  Identities=17%  Similarity=0.180  Sum_probs=141.6

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT  415 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~  415 (629)
                      +.++++|.+|++|+|++.+++.|++++..            ....++||+||||||||++|++||+++ +..        
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~--------  144 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-GAT--------  144 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-TCE--------
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-CCe--------
Confidence            45889999999999999999999988852            234589999999999999999999986 322        


Q ss_pred             cccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHH
Q 036742          416 QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWI  483 (629)
Q Consensus       416 ~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlri  483 (629)
                                 ++.+++...... .......++.+....   ....+.||||||||.|.           ...++.|+..
T Consensus       145 -----------~~~i~~~~l~~~~~g~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~  210 (357)
T 3d8b_A          145 -----------FFSISASSLTSKWVGEGEKMVRALFAVA---RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ  210 (357)
T ss_dssp             -----------EEEEEGGGGCCSSTTHHHHHHHHHHHHH---HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred             -----------EEEEehHHhhccccchHHHHHHHHHHHH---HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence                       566666432110 001112223322221   12345799999999982           2345666666


Q ss_pred             Hhcc----CCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742          484 MDGY----TDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA  558 (629)
Q Consensus       484 lEe~----~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A  558 (629)
                      ++..    ...+.||++||.++.+++++++||. .+.|..|+.++...+|..++...++.++++.+..|+..+.|.....
T Consensus       211 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d  290 (357)
T 3d8b_A          211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD  290 (357)
T ss_dssp             HHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred             HhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence            6642    3567788899999999999999996 7889999999999999999998888899999999999999844433


Q ss_pred             HHH
Q 036742          559 IMA  561 (629)
Q Consensus       559 Inl  561 (629)
                      |..
T Consensus       291 l~~  293 (357)
T 3d8b_A          291 MTQ  293 (357)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.82  E-value=5.8e-19  Score=186.63  Aligned_cols=229  Identities=13%  Similarity=0.057  Sum_probs=158.9

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      ...|..+|.|   ++++|++..++.|..++.    .+..++++|+||||||||++|+++++++......          .
T Consensus        10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~----------~   76 (384)
T 2qby_B           10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE----------D   76 (384)
T ss_dssp             TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHH----------S
T ss_pred             HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhh----------h
Confidence            4568889999   889999999888887775    3345589999999999999999999987321000          0


Q ss_pred             ccC-CcceEEEecccch-hhHHHHHHHHHHH---------------HHHhccCcCCCCeEEEEEccchhhHH-HHHH-HH
Q 036742          421 VAS-SAHHVELNVNLQA-NAKYALMGLVKEI---------------RDNLAITPEVSNAMIVIYEVDKAAEH-IQYL-IK  481 (629)
Q Consensus       421 i~s-S~~vleInas~~~-~~k~~l~~~lrei---------------~~~~~~~~~~~~kVIIIDEID~Ls~~-~q~a-Ll  481 (629)
                      ... ...++++++.... ....++..++..+               ...+.......+.||||||+|.+... .++. +.
T Consensus        77 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~  156 (384)
T 2qby_B           77 EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY  156 (384)
T ss_dssp             SSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHH
T ss_pred             cCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHH
Confidence            000 1236788875433 2222222222222               11111001112239999999999764 2556 66


Q ss_pred             HHHhccCCCcEEEEEecCC---ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHcc---
Q 036742          482 WIMDGYTDSCKLILCCEDD---VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIATKAK---  552 (629)
Q Consensus       482 rilEe~~~~~~~ILitN~~---~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~~s~---  552 (629)
                      .+++.. ..+.||+++|..   ..+.+++++|+ ..+.|++++.+++.++|...+..  .+..++++++..|++.+.   
T Consensus       157 ~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  235 (384)
T 2qby_B          157 QLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH  235 (384)
T ss_dssp             HHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred             HHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence            666655 778899999987   56889999995 79999999999999999998864  346788999999999998   


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          553 QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       553 GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                      ||+|.++++|+.+...+.  ........++.+++.++
T Consensus       236 G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~  270 (384)
T 2qby_B          236 GDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY  270 (384)
T ss_dssp             CCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence            999999999998766554  22334445666555444

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=188.62  Aligned_cols=182  Identities=18%  Similarity=0.147  Sum_probs=135.6

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc---------C---CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD---------G---NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~---------g---~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      ..+.+.+|+||+|++++++.|++++..         +   ...++||+||||||||++|+++|+++.+..          
T Consensus         4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----------   73 (322)
T 1xwi_A            4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST----------   73 (322)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE----------
T ss_pred             ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc----------
Confidence            456678899999999999999988841         1   234899999999999999999999973332          


Q ss_pred             cccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHH
Q 036742          418 LVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKW  482 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlr  482 (629)
                               ++.+++...    .+..   ...++.+....   ....+.||||||+|.+.           ....+.|+.
T Consensus        74 ---------~~~i~~~~l~~~~~g~~---~~~~~~lf~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~  138 (322)
T 1xwi_A           74 ---------FFSISSSDLVSKWLGES---EKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV  138 (322)
T ss_dssp             ---------EEEEECCSSCCSSCCSC---HHHHHHHHHHH---HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHH
T ss_pred             ---------EEEEEhHHHHhhhhhHH---HHHHHHHHHHH---HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHH
Confidence                     345554311    1111   12222222211   12345799999999982           245566777


Q ss_pred             HHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742          483 IMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR  556 (629)
Q Consensus       483 ilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR  556 (629)
                      .++..   ...+.||++||.++.+++++++|| ..+.|+.|+.++...+|..++.+.+..+++..+..|++.+.|...
T Consensus       139 ~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg  216 (322)
T 1xwi_A          139 QMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG  216 (322)
T ss_dssp             HHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH
T ss_pred             HHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence            77653   356778889999999999999999 679999999999999999999888778899999999999988533

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.3e-19  Score=196.26  Aligned_cols=213  Identities=11%  Similarity=0.125  Sum_probs=141.5

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      +.-...+|+||+|.+++++.|++++.           -|  ...++|||||||||||++|++||+++. ..         
T Consensus       201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-~~---------  270 (467)
T 4b4t_H          201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-AT---------  270 (467)
T ss_dssp             ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-CE---------
T ss_pred             cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-CC---------
Confidence            34445788999999999999998763           12  345899999999999999999999973 33         


Q ss_pred             ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742          417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY  478 (629)
Q Consensus       417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~  478 (629)
                                ++.++++.    ..|..   ...++.   .|.......++||||||+|.+..              ....
T Consensus       271 ----------fi~vs~s~L~sk~vGes---ek~ir~---lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~  334 (467)
T 4b4t_H          271 ----------FIRVIGSELVQKYVGEG---ARMVRE---LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTML  334 (467)
T ss_dssp             ----------EEEEEGGGGCCCSSSHH---HHHHHH---HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHH
T ss_pred             ----------eEEEEhHHhhcccCCHH---HHHHHH---HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHH
Confidence                      45555532    22221   122333   22233334568999999998821              2334


Q ss_pred             HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      .|+..|+...  ..+.||++||.++.|+++|++  || ..|+|+.|+.++..++|+.++.+..+. .+-.+..|++.+.|
T Consensus       335 ~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~G  413 (467)
T 4b4t_H          335 ELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPN  413 (467)
T ss_dssp             HHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCS
T ss_pred             HHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCC
Confidence            4555555433  456788899999999999998  88 579999999999999998887664432 12237888988876


Q ss_pred             ----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742          554 ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE  592 (629)
Q Consensus       554 ----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~  592 (629)
                          ||+.+++-.-..+...   .....+..++++++.++...
T Consensus       414 fSGADI~~l~~eAa~~Air~---~~~~it~~Df~~Al~kV~~g  453 (467)
T 4b4t_H          414 STGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVISG  453 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHhcC
Confidence                5555444322222211   11223346777777666543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.3e-19  Score=196.02  Aligned_cols=210  Identities=15%  Similarity=0.166  Sum_probs=141.6

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      -...+|+||+|.+++++.|++++.           -|  ...++|||||||||||++|++||.++ +..           
T Consensus       175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~-----------  242 (437)
T 4b4t_L          175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-GAN-----------  242 (437)
T ss_dssp             SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCE-----------
T ss_pred             CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCC-----------
Confidence            345677999999999999998884           12  23489999999999999999999997 433           


Q ss_pred             ccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------------HHHHHHH
Q 036742          419 VPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------------EHIQYLI  480 (629)
Q Consensus       419 ~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------------~~~q~aL  480 (629)
                              ++.++++.    +.+..   ...++   ..|.......++||||||+|.+.              ....+.|
T Consensus       243 --------~~~v~~s~l~sk~~Ges---e~~ir---~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~l  308 (437)
T 4b4t_L          243 --------FIFSPASGIVDKYIGES---ARIIR---EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL  308 (437)
T ss_dssp             --------EEEEEGGGTCCSSSSHH---HHHHH---HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHH
T ss_pred             --------EEEEehhhhccccchHH---HHHHH---HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHH
Confidence                    45565532    22221   12222   23333334456899999999882              1234566


Q ss_pred             HHHHhccC--CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC--
Q 036742          481 KWIMDGYT--DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ--  553 (629)
Q Consensus       481 lrilEe~~--~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G--  553 (629)
                      +..|+.+.  ..+.||++||.++.|+++|+++  + ..|+|+.|+.++..++|+.++.+..+. ++..+..|+..+.|  
T Consensus       309 L~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~s  387 (437)
T 4b4t_L          309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFN  387 (437)
T ss_dssp             HHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCC
T ss_pred             HHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCC
Confidence            77777544  4578999999999999999886  4 479999999999999998888764432 22347888888776  


Q ss_pred             --CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742          554 --NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA  591 (629)
Q Consensus       554 --DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~  591 (629)
                        ||+.+++-.-..+..   .........++.+++..+..
T Consensus       388 GADi~~l~~eA~~~air---~~~~~i~~~d~~~Al~~v~~  424 (437)
T 4b4t_L          388 GADIRNCATEAGFFAIR---DDRDHINPDDLMKAVRKVAE  424 (437)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCSSBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHh
Confidence              555544432222221   11223344666666665543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.1e-19  Score=198.52  Aligned_cols=183  Identities=18%  Similarity=0.214  Sum_probs=129.4

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      +.-.+.+|+||+|.+++++.|++.+.           .|  ...++|||||||||||++|+|||.++ +..         
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~---------  242 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-NAT---------  242 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCE---------
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-CCC---------
Confidence            44566788999999999999998763           12  23489999999999999999999997 433         


Q ss_pred             ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------H---HHH
Q 036742          417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------H---IQY  478 (629)
Q Consensus       417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~---~q~  478 (629)
                                ++.++++.    +.|..   ...++.+   |.......++||||||+|.+..           .   ...
T Consensus       243 ----------f~~v~~s~l~~~~vGes---e~~ir~l---F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~  306 (434)
T 4b4t_M          243 ----------FLKLAAPQLVQMYIGEG---AKLVRDA---FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTML  306 (434)
T ss_dssp             ----------EEEEEGGGGCSSCSSHH---HHHHHHH---HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHH
T ss_pred             ----------EEEEehhhhhhcccchH---HHHHHHH---HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHH
Confidence                      45565532    22221   1222322   2222233467999999999821           1   234


Q ss_pred             HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcc
Q 036742          479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAK  552 (629)
Q Consensus       479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~  552 (629)
                      .|+..|+.+.  ..+.||++||.++.|+++|++  |+ ..|.|+.|+.++..++|+.++.+..+  +++ .+..||+.+.
T Consensus       307 ~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~  384 (434)
T 4b4t_M          307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTD  384 (434)
T ss_dssp             HHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCS
T ss_pred             HHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCC
Confidence            5666666543  456788899999999999988  77 47999999999999999988877543  232 3788898887


Q ss_pred             C----CHHHHHH
Q 036742          553 Q----NLRKAIM  560 (629)
Q Consensus       553 G----DiR~AIn  560 (629)
                      |    |++.+++
T Consensus       385 G~sGADi~~l~~  396 (434)
T 4b4t_M          385 EFNGAQLKAVTV  396 (434)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            6    5554444

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.81  E-value=1.1e-18  Score=183.75  Aligned_cols=227  Identities=15%  Similarity=0.111  Sum_probs=156.9

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVD----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .|..+|.|   ++++|++..++.|..++..    +...+++|+||||||||++|+++++.+.....           ...
T Consensus        11 ~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-----------~~~   76 (387)
T 2v1u_A           11 VLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-----------SLG   76 (387)
T ss_dssp             HHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-----------HHT
T ss_pred             hcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-----------ccC
Confidence            45567877   8899999999999998853    44568999999999999999999998732100           000


Q ss_pred             CCcceEEEecccchhhHHHHHHH------------------HHHHHHHhccCcCCCCeEEEEEccchhhHH--HHHHHHH
Q 036742          423 SSAHHVELNVNLQANAKYALMGL------------------VKEIRDNLAITPEVSNAMIVIYEVDKAAEH--IQYLIKW  482 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~------------------lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--~q~aLlr  482 (629)
                      ....++++++........++..+                  +..+...+.  ......||||||+|.+...  .+..|..
T Consensus        77 ~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDEi~~l~~~~~~~~~l~~  154 (387)
T 2v1u_A           77 VLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS--RLRGIYIIVLDEIDFLPKRPGGQDLLYR  154 (387)
T ss_dssp             CCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT--TSCSEEEEEEETTTHHHHSTTHHHHHHH
T ss_pred             CCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--ccCCeEEEEEccHhhhcccCCCChHHHh
Confidence            01236777775332222122221                  122221111  1223459999999999876  6777777


Q ss_pred             HHhcc-----CCCcEEEEEecCC---ccchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Q 036742          483 IMDGY-----TDSCKLILCCEDD---VDIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIATK  550 (629)
Q Consensus       483 ilEe~-----~~~~~~ILitN~~---~~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~~  550 (629)
                      +++..     ...+.+|+++|..   ..+.+++.+|+  ..+.|++|+.+++..+|...+..  .+..++++++..+++.
T Consensus       155 l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~  234 (387)
T 2v1u_A          155 ITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAAL  234 (387)
T ss_dssp             HHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHH
T ss_pred             HhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence            77643     4567899999987   56889999999  78999999999999999998875  4567889999999999


Q ss_pred             cc---CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          551 AK---QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       551 s~---GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                      +.   ||+|.++++|+.+...+...........++.+++.++
T Consensus       235 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~  276 (387)
T 2v1u_A          235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI  276 (387)
T ss_dssp             HHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence            98   9999999999876543321122233345555555433

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.81  E-value=1.4e-18  Score=174.38  Aligned_cols=216  Identities=15%  Similarity=0.099  Sum_probs=139.4

Q ss_pred             CCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      +.+|++|+|++.+++.|++++..            ...+++||+||||||||++|+++|+++...               
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---------------   66 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---------------   66 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---------------
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence            46789999999999998887741            233479999999999999999999997332               


Q ss_pred             cCCcceEEEecccchh-hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh------------HHHHHHHHHHH---h
Q 036742          422 ASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------------EHIQYLIKWIM---D  485 (629)
Q Consensus       422 ~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------------~~~q~aLlril---E  485 (629)
                           ++.+++..... ........++.+.....   ...+.||||||+|.+.            ...+..|..++   +
T Consensus        67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  138 (262)
T 2qz4_A           67 -----FLAMAGAEFVEVIGGLGAARVRSLFKEAR---ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD  138 (262)
T ss_dssp             -----EEEEETTTTSSSSTTHHHHHHHHHHHHHH---HTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred             -----EEEechHHHHhhccChhHHHHHHHHHHHH---hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence                 45555532110 00011122222222211   1235799999999983            22333444444   3


Q ss_pred             c--cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-HHH
Q 036742          486 G--YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL-RKA  558 (629)
Q Consensus       486 e--~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi-R~A  558 (629)
                      .  ....+.+|+++|.+..+++++++  || ..+.|..|+.++..+++...+.+.++..+.+. +..|+..+.|.. +.+
T Consensus       139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l  218 (262)
T 2qz4_A          139 GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADI  218 (262)
T ss_dssp             TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHH
T ss_pred             CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHH
Confidence            3  23467788899999999999998  88 67899999999999999999998888777664 578888888754 455


Q ss_pred             HHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742          559 IMALEACKALNYPFADDQPIPLGWEEVLIELAAE  592 (629)
Q Consensus       559 InlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~  592 (629)
                      .++++.+...+..-........+++.++.++...
T Consensus       219 ~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~  252 (262)
T 2qz4_A          219 ANICNEAALHAAREGHTSVHTLNFEYAVERVLAG  252 (262)
T ss_dssp             HHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence            5666666554443223334456777777776554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.81  E-value=6e-19  Score=179.95  Aligned_cols=219  Identities=16%  Similarity=0.118  Sum_probs=145.6

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      ....+.+|++|+|++.+++.|.+++..             ....++||+||||||||++|+++|+++ +..         
T Consensus         9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-~~~---------   78 (285)
T 3h4m_A            9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-NAT---------   78 (285)
T ss_dssp             ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-TCE---------
T ss_pred             cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCC---------
Confidence            445567899999999999999988753             344589999999999999999999986 332         


Q ss_pred             ccccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHHHHHHHH
Q 036742          417 VLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQYLIKWIM  484 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~aLlril  484 (629)
                                ++.+++..... ........++.+....   ....+.||||||+|.+           ....+..|..++
T Consensus        79 ----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll  145 (285)
T 3h4m_A           79 ----------FIRVVGSELVKKFIGEGASLVKDIFKLA---KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL  145 (285)
T ss_dssp             ----------EEEEEGGGGCCCSTTHHHHHHHHHHHHH---HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred             ----------EEEEehHHHHHhccchHHHHHHHHHHHH---HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence                      45555532110 0001112222222211   1223469999999998           345566666665


Q ss_pred             hc-----cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742          485 DG-----YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL  555 (629)
Q Consensus       485 Ee-----~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di  555 (629)
                      +.     ....+.||++||.++.+++++++  |+ ..+.|++|+.++..++|...+...++. .+..+..|+..+.| ..
T Consensus       146 ~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~  224 (285)
T 3h4m_A          146 AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVG  224 (285)
T ss_dssp             HHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCH
T ss_pred             HHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCH
Confidence            53     23467889999999999999998  87 479999999999999999888765543 23347788888877 33


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742          556 RKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE  592 (629)
Q Consensus       556 R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~  592 (629)
                      |.+..++..+...+...........++.+++.++...
T Consensus       225 ~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~  261 (285)
T 3h4m_A          225 AELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK  261 (285)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence            3444444433332222223345557777777777654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.80  E-value=1.8e-18  Score=182.69  Aligned_cols=202  Identities=17%  Similarity=0.179  Sum_probs=151.4

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHc----CC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD----GN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL  418 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~  418 (629)
                      ..+|..+|+|   ++++|++..++.|..++..    +.  .++++|+||+|||||++++++++.+....           
T Consensus         7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-----------   72 (389)
T 1fnn_A            7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-----------   72 (389)
T ss_dssp             GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-----------
T ss_pred             HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-----------
Confidence            3467789998   8899999999988888864    22  33799999999999999999999975431           


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHH------------------HHHHhccCcCCCCeEEEEEccchhhHHHHHHH
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKE------------------IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLI  480 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lre------------------i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aL  480 (629)
                           ...++++++.........+..++..                  +...+.  ......||||||+|.+....+..|
T Consensus        73 -----~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDE~~~l~~~~~~~L  145 (389)
T 1fnn_A           73 -----TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR--ERDLYMFLVLDDAFNLAPDILSTF  145 (389)
T ss_dssp             -----CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--HTTCCEEEEEETGGGSCHHHHHHH
T ss_pred             -----CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh--hcCCeEEEEEECccccchHHHHHH
Confidence                 1126777764332221122111111                  111110  112346999999999998999999


Q ss_pred             HHHHhccC----CCcEEEEEecCC---ccchHHHhhcce--EeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 036742          481 KWIMDGYT----DSCKLILCCEDD---VDIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIAT  549 (629)
Q Consensus       481 lrilEe~~----~~~~~ILitN~~---~~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~  549 (629)
                      .++++.+.    ..+.||++||..   ..+.+.+.+||.  .+.|++++.+++.++|...+..  ....++++++..|++
T Consensus       146 ~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  225 (389)
T 1fnn_A          146 IRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIAD  225 (389)
T ss_dssp             HHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence            99987654    478899999987   557889999986  6999999999999999998865  124689999999999


Q ss_pred             Hc---------cCCHHHHHHHHHHHHh
Q 036742          550 KA---------KQNLRKAIMALEACKA  567 (629)
Q Consensus       550 ~s---------~GDiR~AInlLq~~~~  567 (629)
                      .+         .||+|.++++|+.+..
T Consensus       226 ~~~~~~~~~~~~G~~r~~~~~l~~a~~  252 (389)
T 1fnn_A          226 ITGAQTPLDTNRGDARLAIDILYRSAY  252 (389)
T ss_dssp             HHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred             HHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence            99         8999999999987654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=7.5e-19  Score=191.58  Aligned_cols=183  Identities=17%  Similarity=0.184  Sum_probs=127.8

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      +-...+|+||+|.+++++.|++.+.           -|  ...++|||||||||||++|++||+++ +..          
T Consensus       165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~----------  233 (428)
T 4b4t_K          165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-KAA----------  233 (428)
T ss_dssp             SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-TCE----------
T ss_pred             CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCC----------
Confidence            3344677999999999999998874           12  23489999999999999999999997 333          


Q ss_pred             cccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742          418 LVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL  479 (629)
Q Consensus       418 ~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a  479 (629)
                               ++.++++.    +.|..   ...++.   .|.......++||||||+|.+..              ...+.
T Consensus       234 ---------~~~v~~~~l~~~~~Ge~---e~~ir~---lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~  298 (428)
T 4b4t_K          234 ---------FIRVNGSEFVHKYLGEG---PRMVRD---VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE  298 (428)
T ss_dssp             ---------EEEEEGGGTCCSSCSHH---HHHHHH---HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH
T ss_pred             ---------eEEEecchhhccccchh---HHHHHH---HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH
Confidence                     45565532    22211   122233   22223334568999999998831              24566


Q ss_pred             HHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeecc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          480 IKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVD-PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       480 LlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~-ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      |+..|+.+.  .++.||++||.++.|+++|++  |+ ..|.|+ .|+.++...+|+.++.+..+. ++..++.|+..+.|
T Consensus       299 lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G  377 (428)
T 4b4t_K          299 LLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDS  377 (428)
T ss_dssp             HHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTT
T ss_pred             HHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCC
Confidence            777777543  456788999999999999998  66 468896 688888889998888765432 22347888988776


Q ss_pred             ----CHHHHHH
Q 036742          554 ----NLRKAIM  560 (629)
Q Consensus       554 ----DiR~AIn  560 (629)
                          |++.+++
T Consensus       378 ~sgadi~~l~~  388 (428)
T 4b4t_K          378 LSGAVIAAIMQ  388 (428)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence                5554443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.80  E-value=3.9e-19  Score=194.77  Aligned_cols=188  Identities=18%  Similarity=0.132  Sum_probs=136.0

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNE  411 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~  411 (629)
                      +...+..++.+.+|+||+|++.+++.|++++.            .....++||+||||||||++|++||+++.+..    
T Consensus       120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~----  195 (444)
T 2zan_A          120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST----  195 (444)
T ss_dssp             ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE----
T ss_pred             hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC----
Confidence            34456678899999999999999999999883            12335899999999999999999999963332    


Q ss_pred             CCCccccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHHH
Q 036742          412 KWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQYL  479 (629)
Q Consensus       412 ~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~a  479 (629)
                                     ++.+++....... ......++.+....   ....+.||||||||.+           ....++.
T Consensus       196 ---------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~  257 (444)
T 2zan_A          196 ---------------FFSISSSDLVSKWLGESEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTE  257 (444)
T ss_dssp             ---------------EEEECCC---------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHH
T ss_pred             ---------------EEEEeHHHHHhhhcchHHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHH
Confidence                           3444443211100 00001122222111   1234579999999998           2346667


Q ss_pred             HHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          480 IKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       480 LlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      |+..++..   ...+.||++||.++.++++|++|| ..+.|+.|+.++...+|..++...++.+++..+..|+..+.|
T Consensus       258 lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G  335 (444)
T 2zan_A          258 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG  335 (444)
T ss_dssp             HHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT
T ss_pred             HHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence            77777653   466789999999999999999999 578899999999999999998887777889999999999988

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.80  E-value=4.6e-19  Score=178.82  Aligned_cols=217  Identities=14%  Similarity=0.094  Sum_probs=145.7

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP  414 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~  414 (629)
                      +|.+++++.+|+||+|++.+++.|.+++..            ....++||+||||||||++|+++|+++...        
T Consensus         1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--------   72 (257)
T 1lv7_A            1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--------   72 (257)
T ss_dssp             CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--------
T ss_pred             CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--------
Confidence            589999999999999999999888776641            123479999999999999999999987322        


Q ss_pred             ccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742          415 TQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL  479 (629)
Q Consensus       415 ~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a  479 (629)
                                  ++.+++...... .......++.+.+..   ....+.||||||+|.+..              ...+.
T Consensus        73 ------------~~~i~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~  137 (257)
T 1lv7_A           73 ------------FFTISGSDFVEMFVGVGASRVRDMFEQA---KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ  137 (257)
T ss_dssp             ------------EEEECSCSSTTSCCCCCHHHHHHHHHHH---HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH
T ss_pred             ------------EEEEeHHHHHHHhhhhhHHHHHHHHHHH---HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHH
Confidence                        344444221000 000011222222221   122346999999998832              34455


Q ss_pred             HHHHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742          480 IKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ  553 (629)
Q Consensus       480 LlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G  553 (629)
                      ++..++..  ...+.+|++||.++.+++++.+  |+ ..+.|..|+.++..+++...+.+..  +.++ .+..++..+.|
T Consensus       138 ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G  215 (257)
T 1lv7_A          138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPG  215 (257)
T ss_dssp             HHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTT
T ss_pred             HHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCC
Confidence            56666643  3456788899999999999987  76 5688999999999999988876543  3333 36778899999


Q ss_pred             -CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742          554 -NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE  588 (629)
Q Consensus       554 -DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e  588 (629)
                       +.|.+.++++.+...+...........++++++.+
T Consensus       216 ~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~  251 (257)
T 1lv7_A          216 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK  251 (257)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence             89998888877655433222223334555555444

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.79  E-value=5.1e-19  Score=193.74  Aligned_cols=239  Identities=13%  Similarity=0.144  Sum_probs=148.4

Q ss_pred             CCCccc-c--cHHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          356 SLNGFI-C--HRHEAQLLKELVVDGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       356 tfddIi-G--~e~~~~~Lk~~L~~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      +|++++ |  +..+...+..++.... .++++|+|||||||||||++|++++....               ....+++++
T Consensus       103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~---------------~~~~v~~v~  167 (440)
T 2z4s_A          103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE---------------PDLRVMYIT  167 (440)
T ss_dssp             SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC---------------CSSCEEEEE
T ss_pred             ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC---------------CCCeEEEee
Confidence            789988 4  5556677777776543 66899999999999999999999874321               011267777


Q ss_pred             cccchhhHHHHHHH----HHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc--
Q 036742          432 VNLQANAKYALMGL----VKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD--  502 (629)
Q Consensus       432 as~~~~~k~~l~~~----lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~--  502 (629)
                      +.....  .+...+    ...+...+.    ....||||||+|.+..  ..++.|+.+++. ...+..+|++|+.+..  
T Consensus       168 ~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l  241 (440)
T 2z4s_A          168 SEKFLN--DLVDSMKEGKLNEFREKYR----KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL  241 (440)
T ss_dssp             HHHHHH--HHHHHHHTTCHHHHHHHHT----TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred             HHHHHH--HHHHHHHcccHHHHHHHhc----CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence            643211  011100    011111111    1346999999999975  677778777764 3456778888887433  


Q ss_pred             --chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742          503 --IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP  577 (629)
Q Consensus       503 --I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~  577 (629)
                        +.++|++||   .++.|.+|+.+++..+|...+...++.++++++..|+..+.||+|.+.++|+.+...+.... ...
T Consensus       242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~-~~I  320 (440)
T 2z4s_A          242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTG-KEV  320 (440)
T ss_dssp             SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSS-SCC
T ss_pred             HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence              789999999   68999999999999999999999999999999999999999999999999987655432111 112


Q ss_pred             CchhHHHHHHHHHH-HHhcCCC-hHHHHHHHHHHHHHHHcC
Q 036742          578 IPLGWEEVLIELAA-EILADPS-PKRLVMVRGKIQKLLAEF  616 (629)
Q Consensus       578 ~~~~~ek~l~ei~~-~il~~~s-~~~L~~ir~kly~lL~~~  616 (629)
                      ....+++++.++.. .....-+ ++.+.+++...|++....
T Consensus       321 t~~~~~~~l~~~~~~~~~~~i~~~~~i~~~v~~~y~i~~~~  361 (440)
T 2z4s_A          321 DLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVPREE  361 (440)
T ss_dssp             CHHHHHHHTSTTTCC--------------------------
T ss_pred             CHHHHHHHHHHHhhccccccCChHHHHHHHHHHHhCCCHHH
Confidence            22334444433320 0001123 556666667777765543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.2e-18  Score=180.04  Aligned_cols=197  Identities=11%  Similarity=0.098  Sum_probs=133.3

Q ss_pred             ccccHHHHHH----HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          360 FICHRHEAQL----LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       360 IiG~e~~~~~----Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      +.|.++.++.    |...+..+..+++||+||||||||++++++++++.......          -.....++++||...
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~----------~~~~~~~v~INc~~~   91 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK----------ELPIFDYIHIDALEL   91 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTT----------SSCCEEEEEEETTCC
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhc----------cCCceEEEEEecccc
Confidence            5556555544    45555677888999999999999999999999985321000          001123788888543


Q ss_pred             hhhHHHHHHHHHHH--------------HHHhccC--cCCCCeEEEEEccchhhHHHHHHHHHHHhc---cCCCcEEEEE
Q 036742          436 ANAKYALMGLVKEI--------------RDNLAIT--PEVSNAMIVIYEVDKAAEHIQYLIKWIMDG---YTDSCKLILC  496 (629)
Q Consensus       436 ~~~k~~l~~~lrei--------------~~~~~~~--~~~~~kVIIIDEID~Ls~~~q~aLlrilEe---~~~~~~~ILi  496 (629)
                      .....++..+++++              ...|...  ......||||||+|.|.  .++.|+.+++.   ....+.||++
T Consensus        92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i  169 (318)
T 3te6_A           92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICV  169 (318)
T ss_dssp             C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEE
Confidence            32222222222222              1111111  12234599999999998  56777777652   3345678888


Q ss_pred             ecCCcc----chHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--C--------------------------------
Q 036742          497 CEDDVD----IIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--D--------------------------------  536 (629)
Q Consensus       497 tN~~~~----I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--g--------------------------------  536 (629)
                      +|..+.    +.+++++|+  ..|.|.+|+.+|+..||++.+...  +                                
T Consensus       170 ~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (318)
T 3te6_A          170 GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVI  249 (318)
T ss_dssp             CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEE
T ss_pred             ecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence            988754    456788998  579999999999999999987652  1                                


Q ss_pred             -CCCCHHHHHHHHH---HccCCHHHHHHHHHHHHhc
Q 036742          537 -FDLSMTFAAKIAT---KAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       537 -l~is~e~L~~Ia~---~s~GDiR~AInlLq~~~~~  568 (629)
                       +.+++++++.+++   ...||+|+||++|+.+...
T Consensus       250 ~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~  285 (318)
T 3te6_A          250 NHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI  285 (318)
T ss_dssp             CEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence             1368999999998   5789999999999876543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.78  E-value=1.9e-18  Score=177.21  Aligned_cols=189  Identities=16%  Similarity=0.213  Sum_probs=134.3

Q ss_pred             CcccccHHHHHHHHHHHHc--------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          358 NGFICHRHEAQLLKELVVD--------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~--------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ++|+|++.+++.|..++..              ....++||+||||||||++|+++|+.+. ..                
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~----------------   77 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-AP----------------   77 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-CC----------------
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-CC----------------
Confidence            6799999999999888864              2345899999999999999999999973 22                


Q ss_pred             CcceEEEecccchh---hHHHHHHHHHHHHHHhccC--cCCCCeEEEEEccchhhHHH------------HHHHHHHHhc
Q 036742          424 SAHHVELNVNLQAN---AKYALMGLVKEIRDNLAIT--PEVSNAMIVIYEVDKAAEHI------------QYLIKWIMDG  486 (629)
Q Consensus       424 S~~vleInas~~~~---~k~~l~~~lrei~~~~~~~--~~~~~kVIIIDEID~Ls~~~------------q~aLlrilEe  486 (629)
                         ++.+++.....   ........++++.......  ....+.||||||+|.+....            ++.|+.+++.
T Consensus        78 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~  154 (310)
T 1ofh_A           78 ---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG  154 (310)
T ss_dssp             ---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred             ---EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence               45666532211   0000011223322211000  00124599999999996543            8889999986


Q ss_pred             c----------CCCcEEEEEe----cCCccchHHHhhcce-EeeccCCCHHHHHHHHHH-----------HHHhcC--CC
Q 036742          487 Y----------TDSCKLILCC----EDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQ-----------IARKED--FD  538 (629)
Q Consensus       487 ~----------~~~~~~ILit----N~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~-----------i~~keg--l~  538 (629)
                      .          ...+.||+++    +.+..++++|++||. .+.|++|+.+++..+|..           .+...+  +.
T Consensus       155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~  234 (310)
T 1ofh_A          155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA  234 (310)
T ss_dssp             CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEE
T ss_pred             CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeec
Confidence            3          2456777775    355678999999994 699999999999999882           333345  36


Q ss_pred             CCHHHHHHHHHHc--------cCCHHHHHHHHHHHH
Q 036742          539 LSMTFAAKIATKA--------KQNLRKAIMALEACK  566 (629)
Q Consensus       539 is~e~L~~Ia~~s--------~GDiR~AInlLq~~~  566 (629)
                      +++++++.|++.+        .|++|.+.++|+.+.
T Consensus       235 ~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          235 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM  270 (310)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence            8999999999998        799999999998754

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.78  E-value=8.6e-18  Score=175.61  Aligned_cols=219  Identities=15%  Similarity=0.135  Sum_probs=153.8

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      ..|.++++|..+++|+|++++++.+..++..+.  ++||+||||||||++|+++|+.+.+.                   
T Consensus        15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~-------------------   73 (331)
T 2r44_A           15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLD-------------------   73 (331)
T ss_dssp             HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCC-------------------
T ss_pred             HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCC-------------------
Confidence            358999999999999999999999988888754  89999999999999999999986332                   


Q ss_pred             ceEEEecccchhhHHHHHHHHHHH-----HHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------C
Q 036742          426 HHVELNVNLQANAKYALMGLVKEI-----RDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------T  488 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei-----~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~  488 (629)
                       +..+++.......    +++...     ...+... ......||||||+|.+....++.|+..+++.           .
T Consensus        74 -~~~i~~~~~~~~~----~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~  148 (331)
T 2r44_A           74 -FHRIQFTPDLLPS----DLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD  148 (331)
T ss_dssp             -EEEEECCTTCCHH----HHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred             -eEEEecCCCCChh----hcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC
Confidence             2333331111000    000000     0000000 1112359999999999999999999999863           3


Q ss_pred             CCcEEEEEecCCc-----cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhc----------------------CCCCC
Q 036742          489 DSCKLILCCEDDV-----DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKE----------------------DFDLS  540 (629)
Q Consensus       489 ~~~~~ILitN~~~-----~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~ke----------------------gl~is  540 (629)
                      ..+.+|.++|...     .++++|++||. .+.|.+|+.++..++|...+..+                      ++.++
T Consensus       149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~  228 (331)
T 2r44_A          149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS  228 (331)
T ss_dssp             SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred             CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence            3455666666432     38899999997 59999999999999998876542                      67789


Q ss_pred             HHHHHHHHHHc-----cC---------------CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          541 MTFAAKIATKA-----KQ---------------NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       541 ~e~L~~Ia~~s-----~G---------------DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      ++++++|++.+     .+               +.|.+++++..+...+.....+...+.++.+++..+.
T Consensus       229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl  298 (331)
T 2r44_A          229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL  298 (331)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence            99999998765     23               6999999998766554333333445566665555443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.76  E-value=2.9e-18  Score=189.05  Aligned_cols=203  Identities=17%  Similarity=0.207  Sum_probs=144.8

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .....|+++|+|.+|++|+|++..++.+.+++.....+++||+||||||||++|++||..+.+..+..          ..
T Consensus       165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~----------~l  234 (468)
T 3pxg_A          165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE----------IL  234 (468)
T ss_dssp             SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT----------TT
T ss_pred             HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh----------hh
Confidence            44567999999999999999999999999999988888999999999999999999999986543211          11


Q ss_pred             CCcceEEEecc-cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ....++.+++. ...+   .....++.+......   ..+.|||||    ...++++.|+..++.  ..+.+|++||...
T Consensus       235 ~~~~~~~l~~~~~~~g---~~e~~~~~~~~~~~~---~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e  302 (468)
T 3pxg_A          235 RDKRVMTLDMGTKYRG---EFEDRLKKVMDEIRQ---AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDE  302 (468)
T ss_dssp             SSCCEECC-------------CTTHHHHHHHHHT---CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTT
T ss_pred             cCCeEEEeeCCccccc---hHHHHHHHHHHHHHh---cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHH
Confidence            12234455543 1111   111122333322221   235699999    445677778877763  5688999999876


Q ss_pred             -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHH
Q 036742          502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIMALEACK  566 (629)
Q Consensus       502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AInlLq~~~  566 (629)
                           .++++|++||.++.|.+|+.+++..+|..++.+    .++.++++++..++..+.+.+      +.++++|+.++
T Consensus       303 ~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~  382 (468)
T 3pxg_A          303 YRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG  382 (468)
T ss_dssp             THHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence                 478999999999999999999999999988765    788999999999999887655      47999997655


Q ss_pred             h
Q 036742          567 A  567 (629)
Q Consensus       567 ~  567 (629)
                      .
T Consensus       383 ~  383 (468)
T 3pxg_A          383 S  383 (468)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.76  E-value=3.7e-17  Score=170.50  Aligned_cols=188  Identities=16%  Similarity=0.198  Sum_probs=139.2

Q ss_pred             CCCCccc---ccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          355 SSLNGFI---CHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       355 ~tfddIi---G~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      .+|++++   ++..+...+..++...  ..++++|+||||||||++|+++++++....                 ..+++
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~-----------------~~~~~   70 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG-----------------YRVIY   70 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT-----------------CCEEE
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC-----------------CEEEE
Confidence            4789987   4566777788888764  356899999999999999999999874321                 12677


Q ss_pred             EecccchhhHHHHHHH----HHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc-
Q 036742          430 LNVNLQANAKYALMGL----VKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV-  501 (629)
Q Consensus       430 Inas~~~~~k~~l~~~----lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~-  501 (629)
                      +++.....  ......    ...+...+     ....||||||+|.+..  ..+..|..+++. ...+..+|++++... 
T Consensus        71 i~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~  143 (324)
T 1l8q_A           71 SSADDFAQ--AMVEHLKKGTINEFRNMY-----KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ  143 (324)
T ss_dssp             EEHHHHHH--HHHHHHHHTCHHHHHHHH-----HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred             EEHHHHHH--HHHHHHHcCcHHHHHHHh-----cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence            77743211  011111    11111111     1245999999999975  566777776653 234567888777543 


Q ss_pred             ---cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          502 ---DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       502 ---~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                         .+.++|.+||   .++.|++ +.+++..+|...+...++.+++++++.|+..+ ||+|.+.+.|+.+...
T Consensus       144 ~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~  214 (324)
T 1l8q_A          144 KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK  214 (324)
T ss_dssp             GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence               4789999999   7899999 99999999999999999999999999999999 9999999999876654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.74  E-value=7.4e-17  Score=169.30  Aligned_cols=204  Identities=18%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..|..+|.|   ++++|++..++.|..++..    +...+++|+||+|||||++|+++++.+.....             
T Consensus        11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~-------------   74 (386)
T 2qby_A           11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL-------------   74 (386)
T ss_dssp             GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC-------------
T ss_pred             hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-------------
Confidence            345567777   8899999999999998873    34558999999999999999999998742100             


Q ss_pred             cCCcceEEEecccchhhHHHH------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhh----HHHHHH
Q 036742          422 ASSAHHVELNVNLQANAKYAL------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA----EHIQYL  479 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls----~~~q~a  479 (629)
                       ....++++++.........+                  .+.+..+...+..  ...+.||||||+|.+.    ......
T Consensus        75 -~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~  151 (386)
T 2qby_A           75 -GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYK  151 (386)
T ss_dssp             -SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHH
T ss_pred             -CCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHH
Confidence             01125666653211111111                  1112222221111  2235699999999996    345666


Q ss_pred             HHHHHhcc-CCCcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc
Q 036742          480 IKWIMDGY-TDSCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--DFDLSMTFAAKIATKA  551 (629)
Q Consensus       480 LlrilEe~-~~~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--gl~is~e~L~~Ia~~s  551 (629)
                      |.+.++.. ...+.+|++++...   .+.+.+.+|+  ..+.|++++.+++.++|...+...  ...++++++..|++.+
T Consensus       152 l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~  231 (386)
T 2qby_A          152 LSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA  231 (386)
T ss_dssp             HHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH
T ss_pred             HhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence            66666542 34677899998764   5778899999  689999999999999999887643  3578999999999999


Q ss_pred             c---CCHHHHHHHHHHHHhc
Q 036742          552 K---QNLRKAIMALEACKAL  568 (629)
Q Consensus       552 ~---GDiR~AInlLq~~~~~  568 (629)
                      .   |++|.++++|+.+...
T Consensus       232 ~~~~G~~r~~~~ll~~a~~~  251 (386)
T 2qby_A          232 AREHGDARRALDLLRVSGEI  251 (386)
T ss_dssp             HHTTCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHH
Confidence            8   9999999999876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.73  E-value=2.6e-17  Score=170.91  Aligned_cols=180  Identities=18%  Similarity=0.120  Sum_probs=125.3

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      ..+.+.+|+||+|++.+++.|++++..             ....++||+||||||||++|++||+++ +..         
T Consensus         7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-~~~---------   76 (301)
T 3cf0_A            7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN---------   76 (301)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-TCE---------
T ss_pred             ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-CCC---------
Confidence            456778899999999999999988852             223479999999999999999999986 322         


Q ss_pred             ccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH--------------HHHHHH
Q 036742          417 VLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH--------------IQYLIK  481 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--------------~q~aLl  481 (629)
                                ++.+++....... ......++.+...   .....++||||||+|.+...              .++.|+
T Consensus        77 ----------~i~v~~~~l~~~~~g~~~~~~~~~f~~---a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL  143 (301)
T 3cf0_A           77 ----------FISIKGPELLTMWFGESEANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL  143 (301)
T ss_dssp             ----------EEEECHHHHHHHHHTTCTTHHHHHHHH---HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHH
T ss_pred             ----------EEEEEhHHHHhhhcCchHHHHHHHHHH---HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHH
Confidence                      4566653211000 0000111222211   11223579999999998653              356777


Q ss_pred             HHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          482 WIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       482 rilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      ..++..  ..++.||++||.++.+++++++  |+ ..+.|+.|+.++..++|+.++.+.++. .+..+..|+..+.|
T Consensus       144 ~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g  219 (301)
T 3cf0_A          144 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG  219 (301)
T ss_dssp             HHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSS
T ss_pred             HHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCC
Confidence            777743  3467889999999999999988  88 579999999999999999888776543 22235566666544

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.73  E-value=4.6e-17  Score=170.17  Aligned_cols=239  Identities=14%  Similarity=0.075  Sum_probs=143.6

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCC--
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASS--  424 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS--  424 (629)
                      ..-+|.+|++|+|++.+++.+...+..+...++||+||||||||++|+++++.+............|....   ....  
T Consensus        16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (350)
T 1g8p_A           16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL   95 (350)
T ss_dssp             --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred             CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence            44467899999999998877766665444557999999999999999999998632100000000011000   0000  


Q ss_pred             --------cceEEEecccchhhHHHHHH-HHHHH-HHH-hccC-c---CCCCeEEEEEccchhhHHHHHHHHHHHhcc--
Q 036742          425 --------AHHVELNVNLQANAKYALMG-LVKEI-RDN-LAIT-P---EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--  487 (629)
Q Consensus       425 --------~~vleInas~~~~~k~~l~~-~lrei-~~~-~~~~-~---~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--  487 (629)
                              ..++.+......  ..++.. .+... ... .... .   ...+.||||||+|.+....++.|+.+++..  
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~--~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~  173 (350)
T 1g8p_A           96 STNVIRKPTPVVDLPLGVSE--DRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGEN  173 (350)
T ss_dssp             CCCEEEECCCEEEECTTCCH--HHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEE
T ss_pred             ccccccCCCcccccCCCcch--hhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCce
Confidence                    112222211100  000000 00110 110 0000 0   112569999999999999999999999863  


Q ss_pred             -----------CCCcEEEEEecCCc-cchHHHhhcceE-eeccCCC-HHHHHHHHHHH----------------------
Q 036742          488 -----------TDSCKLILCCEDDV-DIIESVKTHCKV-IKVDPPV-THEIMEVLIQI----------------------  531 (629)
Q Consensus       488 -----------~~~~~~ILitN~~~-~I~~aLrSR~~~-I~F~ppt-~eei~~iL~~i----------------------  531 (629)
                                 ...+.+|+++|... .+.++|++||.. +.|.+|+ .++...++..+                      
T Consensus       174 ~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~  253 (350)
T 1g8p_A          174 VVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIR  253 (350)
T ss_dssp             EECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHH
Confidence                       13566778888644 689999999965 9999995 44444555441                      


Q ss_pred             -------HHhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          532 -------ARKEDFDLSMTFAAKIATKAKQ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       532 -------~~kegl~is~e~L~~Ia~~s~G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                             ....++.++++++..|++.+.+    ++|.++++|+.+...+...........++.+++..+.
T Consensus       254 ~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l  323 (350)
T 1g8p_A          254 NQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL  323 (350)
T ss_dssp             HHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence                   2234568999999999999877    8999999998765543322222344455555554433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.73  E-value=2.1e-17  Score=155.48  Aligned_cols=170  Identities=13%  Similarity=0.160  Sum_probs=121.5

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ...|.++|+|..|++++|+++.++.+..++..+...++||+||||||||++|+++++.+.+.....          ....
T Consensus         9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~----------~~~~   78 (195)
T 1jbk_A            9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPE----------GLKG   78 (195)
T ss_dssp             EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCG----------GGTT
T ss_pred             hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCch----------hhcC
Confidence            356999999999999999999999999999887778999999999999999999999985432100          0112


Q ss_pred             cceEEEecccch---hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEE
Q 036742          425 AHHVELNVNLQA---NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       425 ~~vleInas~~~---~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~  493 (629)
                      ..++.+++....   .........+..+......  ...+.||||||+|.+..        ..++.|+.+++.  ..+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~  154 (195)
T 1jbk_A           79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHC  154 (195)
T ss_dssp             CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCE
T ss_pred             CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEE
Confidence            235566553211   1111122233333332211  23356999999999953        336777777764  46788


Q ss_pred             EEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHH
Q 036742          494 ILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       494 ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL  528 (629)
                      |+++|...     .+++++++||..+.|.+|+.+++.++|
T Consensus       155 i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          155 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             EEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             EEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            99998765     578999999999999999999987765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.72  E-value=8.8e-17  Score=177.66  Aligned_cols=215  Identities=16%  Similarity=0.148  Sum_probs=143.9

Q ss_pred             hhhc-cCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742          348 WADK-HQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP  414 (629)
Q Consensus       348 W~eK-yrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~  414 (629)
                      |.+. ....+|+||+|++++++.|++++..           .. ..++||+||||||||++|++||.++...        
T Consensus         5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--------   76 (476)
T 2ce7_A            5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--------   76 (476)
T ss_dssp             CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--------
T ss_pred             eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--------
Confidence            4444 4566899999999999988887741           12 2479999999999999999999997322        


Q ss_pred             ccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HH
Q 036742          415 TQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HI  476 (629)
Q Consensus       415 ~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~  476 (629)
                                  ++.++++..    .+.   ....++.+...   .....++||||||+|.+..              ..
T Consensus        77 ------------f~~is~~~~~~~~~g~---~~~~~r~lf~~---A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~  138 (476)
T 2ce7_A           77 ------------FFHISGSDFVELFVGV---GAARVRDLFAQ---AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT  138 (476)
T ss_dssp             ------------EEEEEGGGTTTCCTTH---HHHHHHHHHHH---HHHTCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred             ------------eeeCCHHHHHHHHhcc---cHHHHHHHHHH---HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence                        455555321    111   11222222222   1123457999999999832              24


Q ss_pred             HHHHHHHHhcc--CCCcEEEEEecCCccchHHHhh--cce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHH
Q 036742          477 QYLIKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATK  550 (629)
Q Consensus       477 q~aLlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~  550 (629)
                      ++.|+..++.+  ...+.||++||.++.+++++++  ||. .+.|..|+.++..++|+..+.+..  +.+++ +..|+..
T Consensus       139 l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~  216 (476)
T 2ce7_A          139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKR  216 (476)
T ss_dssp             HHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHT
T ss_pred             HHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHh
Confidence            56666666643  3467788899999999999887  774 789999999999999988776543  33333 7889999


Q ss_pred             ccCCH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742          551 AKQNL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIELA  590 (629)
Q Consensus       551 s~GDi-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~  590 (629)
                      +.|.. |.+.+++..+...+...........+++..+..+.
T Consensus       217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~  257 (476)
T 2ce7_A          217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI  257 (476)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence            99987 67777777654433211122333456666665543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.71  E-value=4.9e-17  Score=167.42  Aligned_cols=188  Identities=11%  Similarity=0.174  Sum_probs=137.0

Q ss_pred             CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ++++|++.+++.|...+..+.         ..++||+||||||||++|+++|+.+.+...                 .++
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~-----------------~~~   79 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE-----------------AMI   79 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG-----------------GEE
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc-----------------ceE
Confidence            678999999999998887531         236999999999999999999999854321                 255


Q ss_pred             EEecccchhhHHHHHHHH------------HHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC--------
Q 036742          429 ELNVNLQANAKYALMGLV------------KEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------  488 (629)
Q Consensus       429 eInas~~~~~k~~l~~~l------------rei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------  488 (629)
                      .+++....... .....+            ..+.....   ...+.||||||+|.+....++.|+++++...        
T Consensus        80 ~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~  155 (311)
T 4fcw_A           80 RIDMTEYMEKH-AVSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRT  155 (311)
T ss_dssp             EEEGGGCCSTT-HHHHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCE
T ss_pred             Eeecccccccc-cHHHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCE
Confidence            66664221110 000111            00111111   1124699999999999999999999998654        


Q ss_pred             ---CCcEEEEEecC--------------------------CccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh----
Q 036742          489 ---DSCKLILCCED--------------------------DVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK----  534 (629)
Q Consensus       489 ---~~~~~ILitN~--------------------------~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k----  534 (629)
                         .++.||++||.                          ...+.++|.+|| .++.|.+|+.+++..++...+.+    
T Consensus       156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~  235 (311)
T 4fcw_A          156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR  235 (311)
T ss_dssp             EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred             EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence               35569999998                          335788999999 78999999999999988876543    


Q ss_pred             -----cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 036742          535 -----EDFDLSMTFAAKIATKAK---QNLRKAIMALEACK  566 (629)
Q Consensus       535 -----egl~is~e~L~~Ia~~s~---GDiR~AInlLq~~~  566 (629)
                           ..+.++++++..|++...   |++|.+.+.++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~  275 (311)
T 4fcw_A          236 LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL  275 (311)
T ss_dssp             HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHT
T ss_pred             HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHH
Confidence                 235689999999999765   99999998888654

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=99.70  E-value=1.2e-16  Score=167.97  Aligned_cols=176  Identities=12%  Similarity=0.086  Sum_probs=137.8

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHH
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI  449 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei  449 (629)
                      |.+.++.+..+.+|||||+|+||++++..+++.+.+.++.              ...+++++..  ...    .+++.+ 
T Consensus         9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~----~~l~~~-   67 (343)
T 1jr3_D            9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------------EHHTFSIDPN--TDW----NAIFSL-   67 (343)
T ss_dssp             HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------------EEEEEECCTT--CCH----HHHHHH-
T ss_pred             HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------------eeEEEEecCC--CCH----HHHHHH-
Confidence            4455553445678899999999999999999987643210              0013344321  111    122222 


Q ss_pred             HHHhccCcCCCCeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCC------ccchHHHhhcceEeeccCCCHH
Q 036742          450 RDNLAITPEVSNAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDD------VDIIESVKTHCKVIKVDPPVTH  522 (629)
Q Consensus       450 ~~~~~~~~~~~~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~------~~I~~aLrSR~~~I~F~ppt~e  522 (629)
                      ......  .+..+||||||+|. ++.+++++|++++|+++.++.||++|+..      ..+.++|.+||.++.|.+++..
T Consensus        68 ~~~~pl--f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~  145 (343)
T 1jr3_D           68 CQAMSL--FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA  145 (343)
T ss_dssp             HHHHHH--CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred             hcCcCC--ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence            222222  13467999999999 99999999999999999999999999874      4588999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       523 ei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      ++..+|..++.++|+.++++++..|++.++||+|.+++.|+.+...
T Consensus       146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~  191 (343)
T 1jr3_D          146 QLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLL  191 (343)
T ss_dssp             HHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.69  E-value=9.6e-17  Score=186.50  Aligned_cols=203  Identities=17%  Similarity=0.200  Sum_probs=144.4

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .....|+++++|..+++|+|++..++.+.+++.....+++||+||||||||++|+++|+.+.+.....          ..
T Consensus       165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~----------~l  234 (758)
T 3pxi_A          165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE----------IL  234 (758)
T ss_dssp             SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT----------TT
T ss_pred             HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCCh----------hh
Confidence            44567999999999999999999999999999988888999999999999999999999985543211          11


Q ss_pred             CCcceEEEec-ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleIna-s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ....++.+++ ....|   .....++.+...+..   ..+.|||||    ...++++.|+..++  ...+.+|++||...
T Consensus       235 ~~~~~~~~~~g~~~~G---~~e~~l~~~~~~~~~---~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~  302 (758)
T 3pxi_A          235 RDKRVMTLDMGTKYRG---EFEDRLKKVMDEIRQ---AGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDE  302 (758)
T ss_dssp             SSCCEECC-------------CTTHHHHHHHHHT---CCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTT
T ss_pred             cCCeEEEecccccccc---hHHHHHHHHHHHHHh---cCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHH
Confidence            1222444444 11111   111223333332222   245699999    44467777887777  45688999999877


Q ss_pred             -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHH
Q 036742          502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKAIMALEACK  566 (629)
Q Consensus       502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~AInlLq~~~  566 (629)
                           .++++|++||..+.|.+|+.+++..+|..++.+    .++.++++++..++..+.+.      .+.++.++..++
T Consensus       303 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~  382 (758)
T 3pxi_A          303 YRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG  382 (758)
T ss_dssp             THHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence                 589999999999999999999999999987655    67889999999999887654      368888887654


Q ss_pred             h
Q 036742          567 A  567 (629)
Q Consensus       567 ~  567 (629)
                      .
T Consensus       383 ~  383 (758)
T 3pxi_A          383 S  383 (758)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.68  E-value=9.5e-17  Score=189.00  Aligned_cols=209  Identities=16%  Similarity=0.157  Sum_probs=144.6

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ...|+++|+|.+|++++|+++.+..+.+++..+..+++||+||||||||++|+++|..+....+..          ....
T Consensus       157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~----------~l~~  226 (854)
T 1qvr_A          157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE----------GLKG  226 (854)
T ss_dssp             EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT----------TSTT
T ss_pred             HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch----------hhcC
Confidence            356899999999999999999999999999988888999999999999999999999985432210          1112


Q ss_pred             cceEEEecccch-hhH--HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------HHHHHHHHHHHhccCCCcEE
Q 036742          425 AHHVELNVNLQA-NAK--YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------EHIQYLIKWIMDGYTDSCKL  493 (629)
Q Consensus       425 ~~vleInas~~~-~~k--~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------~~~q~aLlrilEe~~~~~~~  493 (629)
                      ..++.+++.... +..  ......++.+......  ...+.||||||+|.+.        .++.+.|+.+++.  ..+.+
T Consensus       227 ~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~  302 (854)
T 1qvr_A          227 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRL  302 (854)
T ss_dssp             CEEEEECC-----------CHHHHHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCE
T ss_pred             CeEEEeehHHhhccCccchHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEE
Confidence            345666653211 110  0112233333333221  1235699999999996        4556778888874  46778


Q ss_pred             EEEecCCc----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742          494 ILCCEDDV----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQN------LRKAI  559 (629)
Q Consensus       494 ILitN~~~----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GD------iR~AI  559 (629)
                      |++||...    .++++|.+||..+.|.+|+.+++..+|..++.    ..++.++++++..++..+.|.      .++++
T Consensus       303 I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai  382 (854)
T 1qvr_A          303 IGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI  382 (854)
T ss_dssp             EEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred             EEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence            88888664    36899999999999999999999999987665    457889999999999988653      67888


Q ss_pred             HHHHHHHh
Q 036742          560 MALEACKA  567 (629)
Q Consensus       560 nlLq~~~~  567 (629)
                      .+++.++.
T Consensus       383 ~lldea~a  390 (854)
T 1qvr_A          383 DLIDEAAA  390 (854)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.68  E-value=5.5e-16  Score=165.20  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=128.4

Q ss_pred             CcccccHHHHHHHHHHHH----c--------------------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          358 NGFICHRHEAQLLKELVV----D--------------------------GNCPHILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~----~--------------------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      ++|+|++++++.|..++.    .                          ....++||+||||||||++|+++|+.+ +..
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l-~~~   99 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL-DIP   99 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCC
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence            568999999999988872    1                          123479999999999999999999987 322


Q ss_pred             CCCCCCCccccccccCCcceEEEecccch--h-hHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHH--------
Q 036742          408 CWNEKWPTQVLVPVASSAHHVELNVNLQA--N-AKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEH--------  475 (629)
Q Consensus       408 ~~~~~~~~~v~~~i~sS~~vleInas~~~--~-~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~--------  475 (629)
                                         ++.+++....  + ........+.......... ....+.||||||+|.+...        
T Consensus       100 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~  160 (376)
T 1um8_A          100 -------------------IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR  160 (376)
T ss_dssp             -------------------EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred             -------------------EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec
Confidence                               3445543211  0 0000111222222211110 1123469999999999877        


Q ss_pred             ------HHHHHHHHHhccC---------------------CCcEEEEEecC-----------------------------
Q 036742          476 ------IQYLIKWIMDGYT---------------------DSCKLILCCED-----------------------------  499 (629)
Q Consensus       476 ------~q~aLlrilEe~~---------------------~~~~~ILitN~-----------------------------  499 (629)
                            .++.|+.+++...                     .++.+|+++|.                             
T Consensus       161 ~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~  240 (376)
T 1um8_A          161 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQE  240 (376)
T ss_dssp             ---CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTT
T ss_pred             ccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchh
Confidence                  8999999999541                     44567777762                             


Q ss_pred             ------------CccchHHHhhcc-eEeeccCCCHHHHHHHHHH----HHH---------hcCCCCCHHHHHHHHHHcc-
Q 036742          500 ------------DVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----IAR---------KEDFDLSMTFAAKIATKAK-  552 (629)
Q Consensus       500 ------------~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i~~---------kegl~is~e~L~~Ia~~s~-  552 (629)
                                  ...+.++|.+|| .++.|++++.+++..++..    ++.         ..++.++++++..|++.+. 
T Consensus       241 ~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~  320 (376)
T 1um8_A          241 AILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE  320 (376)
T ss_dssp             TSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc
Confidence                        012568899999 7899999999999988862    211         1245689999999999976 


Q ss_pred             --CCHHHHHHHHHHHHh
Q 036742          553 --QNLRKAIMALEACKA  567 (629)
Q Consensus       553 --GDiR~AInlLq~~~~  567 (629)
                        |++|.+.++|+.+..
T Consensus       321 ~~~~~R~L~~~le~~~~  337 (376)
T 1um8_A          321 RKTGARGLRAIIEDFCL  337 (376)
T ss_dssp             TTCTGGGHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHHH
Confidence              999999999987654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.68  E-value=1.7e-16  Score=149.42  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=114.6

Q ss_pred             cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ....|.++|+|..|++++|++..++.+.+++..+...++||+||||||||++|+++++.+.......          ...
T Consensus         8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~----------~~~   77 (187)
T 2p65_A            8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPD----------SLK   77 (187)
T ss_dssp             TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCT----------TTT
T ss_pred             HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcc----------hhc
Confidence            3456899999999999999999999999999887778999999999999999999999975432100          011


Q ss_pred             CcceEEEecccch---hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCc
Q 036742          424 SAHHVELNVNLQA---NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       424 S~~vleInas~~~---~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~  491 (629)
                      ...++.+++....   .........+..+.......  ..+.||||||+|.+.         ....+.|..+++.  ..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~  153 (187)
T 2p65_A           78 GRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GEL  153 (187)
T ss_dssp             TCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCS
T ss_pred             CCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCe
Confidence            2235555542110   00111122233333222211  234699999999996         4567777777764  567


Q ss_pred             EEEEEecCCc-----cchHHHhhcceEeeccCCC
Q 036742          492 KLILCCEDDV-----DIIESVKTHCKVIKVDPPV  520 (629)
Q Consensus       492 ~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt  520 (629)
                      .+|+++|...     .++++|++||..+.+.+|+
T Consensus       154 ~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~  187 (187)
T 2p65_A          154 RCIGATTVSEYRQFIEKDKALERRFQQILVEQPS  187 (187)
T ss_dssp             CEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred             eEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence            8899998765     4789999999999998875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.67  E-value=1.7e-16  Score=176.15  Aligned_cols=188  Identities=17%  Similarity=0.185  Sum_probs=132.9

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      .+.+.+|++|+|++.+++.|++++..             ....++||+||||||||++|++||.++ +..          
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~----------  265 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF----------  265 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSE----------
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-CCC----------
Confidence            45667889999999999999988852             334589999999999999999999986 322          


Q ss_pred             cccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742          418 LVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD  485 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE  485 (629)
                               ++.+++...... .......++..   |.........||||||||.|.           ...++.|++.++
T Consensus       266 ---------fv~vn~~~l~~~~~g~~~~~~~~~---f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld  333 (489)
T 3hu3_A          266 ---------FFLINGPEIMSKLAGESESNLRKA---FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD  333 (489)
T ss_dssp             ---------EEEEEHHHHHTSCTTHHHHHHHHH---HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ---------EEEEEchHhhhhhcchhHHHHHHH---HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence                     577776321100 00111122222   222222345699999998773           367788999998


Q ss_pred             ccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742          486 GYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM  560 (629)
Q Consensus       486 e~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn  560 (629)
                      ...  ..+.||++||.+..+++++++  || ..+.|..|+.++..++|...+....+. .+..+..++..+.|.....+.
T Consensus       334 ~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~  412 (489)
T 3hu3_A          334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA  412 (489)
T ss_dssp             HSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHH
T ss_pred             ccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHH
Confidence            543  456788899999999999999  66 469999999999999999887665443 233477888888886554444


Q ss_pred             HH
Q 036742          561 AL  562 (629)
Q Consensus       561 lL  562 (629)
                      .|
T Consensus       413 ~L  414 (489)
T 3hu3_A          413 AL  414 (489)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.66  E-value=1.6e-16  Score=184.35  Aligned_cols=206  Identities=16%  Similarity=0.181  Sum_probs=148.7

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .....|+++++|.+|++++|++..++.+.+++......++||+||||||||++|+++|..+.+..+..          ..
T Consensus       171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~----------~~  240 (758)
T 1r6b_X          171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE----------VM  240 (758)
T ss_dssp             SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCG----------GG
T ss_pred             HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCCh----------hh
Confidence            34456899999999999999999999999999887778999999999999999999999985433210          01


Q ss_pred             CCcceEEEecc------cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhcc
Q 036742          423 SSAHHVELNVN------LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGY  487 (629)
Q Consensus       423 sS~~vleInas------~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~  487 (629)
                      ....++.++..      ...+   .....++.+......   ..+.||||||+|.+         ..++.+.|..+++. 
T Consensus       241 ~~~~~~~~~~~~l~~~~~~~g---~~e~~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-  313 (758)
T 1r6b_X          241 ADCTIYSLDIGSLLAGTKYRG---DFEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-  313 (758)
T ss_dssp             TTCEEEECCCC---CCCCCSS---CHHHHHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-
T ss_pred             cCCEEEEEcHHHHhccccccc---hHHHHHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-
Confidence            11223333321      1112   122334444443322   23579999999998         34455666655553 


Q ss_pred             CCCcEEEEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC----
Q 036742          488 TDSCKLILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN----  554 (629)
Q Consensus       488 ~~~~~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD----  554 (629)
                       ..+.+|++|+...     .++++|.+||..+.|.+|+.+++.++|..++..    .++.++++++..++..+.|.    
T Consensus       314 -~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~  392 (758)
T 1r6b_X          314 -GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR  392 (758)
T ss_dssp             -CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred             -CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccc
Confidence             5677888888643     367899999999999999999999999887754    67889999999999887653    


Q ss_pred             --HHHHHHHHHHHH
Q 036742          555 --LRKAIMALEACK  566 (629)
Q Consensus       555 --iR~AInlLq~~~  566 (629)
                        ...++.+++.+.
T Consensus       393 ~lp~~~i~lld~a~  406 (758)
T 1r6b_X          393 HLPDKAIDVIDEAG  406 (758)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHH
Confidence              346777776544

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.66  E-value=6.5e-16  Score=157.15  Aligned_cols=182  Identities=16%  Similarity=0.151  Sum_probs=120.4

Q ss_pred             CcccccHHHHHHHH-------HHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742          358 NGFICHRHEAQLLK-------ELVV---DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH  427 (629)
Q Consensus       358 ddIiG~e~~~~~Lk-------~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v  427 (629)
                      +.++|.....+.+.       ..+.   .....++||+||||||||++|+++|+.+. ..                   +
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-~~-------------------~   92 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-FP-------------------F   92 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-CS-------------------E
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CC-------------------E
Confidence            45667655443333       3443   23345899999999999999999999863 32                   4


Q ss_pred             EEEeccc-chhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----------hHHHHHHHHHHHhcc---CCCcE
Q 036742          428 VELNVNL-QANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----------AEHIQYLIKWIMDGY---TDSCK  492 (629)
Q Consensus       428 leInas~-~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----------s~~~q~aLlrilEe~---~~~~~  492 (629)
                      +.+++.. ..+. .......++.+...+.   .....||||||||.|          ....++.|..+++..   ...+.
T Consensus        93 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~  169 (272)
T 1d2n_A           93 IKICSPDKMIGFSETAKCQAMKKIFDDAY---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL  169 (272)
T ss_dssp             EEEECGGGCTTCCHHHHHHHHHHHHHHHH---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred             EEEeCHHHhcCCchHHHHHHHHHHHHHHH---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence            5555532 1111 0011122333322221   133569999999998          456677777777743   23455


Q ss_pred             EEEEecCCccchH-HHhhcc-eEeeccCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHH
Q 036742          493 LILCCEDDVDIIE-SVKTHC-KVIKVDPPVT-HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-----NLRKAIMALEA  564 (629)
Q Consensus       493 ~ILitN~~~~I~~-aLrSR~-~~I~F~ppt~-eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-----DiR~AInlLq~  564 (629)
                      +|++||.++.+++ .+++|+ ..+.|++++. +++..++..   .  ..++++.+..|++.+.|     ++|+++++++.
T Consensus       170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~  244 (272)
T 1d2n_A          170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM  244 (272)
T ss_dssp             EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred             EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence            7778888777776 678884 7789988887 666665543   2  24689999999999988     99999999998


Q ss_pred             HHh
Q 036742          565 CKA  567 (629)
Q Consensus       565 ~~~  567 (629)
                      +..
T Consensus       245 a~~  247 (272)
T 1d2n_A          245 SLQ  247 (272)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.66  E-value=1.5e-15  Score=153.75  Aligned_cols=194  Identities=15%  Similarity=0.137  Sum_probs=127.4

Q ss_pred             CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      +|++|+|+...+..+.+.+..  ....++||+||||||||++|++++..+....                 ..++.+++.
T Consensus         4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~-----------------~~~~~v~~~   66 (265)
T 2bjv_A            4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ-----------------GPFISLNCA   66 (265)
T ss_dssp             ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT-----------------SCEEEEEGG
T ss_pred             ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC-----------------CCeEEEecC
Confidence            689999998887777766642  2335799999999999999999998753221                 126778875


Q ss_pred             cchhhHHHHHH-HHHHHHHHhccC--------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEE
Q 036742          434 LQANAKYALMG-LVKEIRDNLAIT--------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKL  493 (629)
Q Consensus       434 ~~~~~k~~l~~-~lrei~~~~~~~--------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~  493 (629)
                      .....  .+.. ++......+...        ....+.+|||||||.+....+..|+++++..           ...+++
T Consensus        67 ~~~~~--~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i  144 (265)
T 2bjv_A           67 ALNEN--LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRL  144 (265)
T ss_dssp             GSCHH--HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEE
T ss_pred             CCChh--HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEE
Confidence            43211  1111 111000000000        0112459999999999999999999999853           246789


Q ss_pred             EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHH----HHHHHHhcCC----CCCHHHHHHHHHHc-cC
Q 036742          494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEV----LIQIARKEDF----DLSMTFAAKIATKA-KQ  553 (629)
Q Consensus       494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~i----L~~i~~kegl----~is~e~L~~Ia~~s-~G  553 (629)
                      |+++|...       .+.++|.+|+.  .+.++++..  +++..+    |...+.+.+.    .++++++..|.... .|
T Consensus       145 I~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~g  224 (265)
T 2bjv_A          145 VCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPG  224 (265)
T ss_dssp             EEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred             EEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCC
Confidence            99999852       35689999984  577787765  555544    3444555554    67999999998775 89


Q ss_pred             CHHHHHHHHHHHHhc
Q 036742          554 NLRKAIMALEACKAL  568 (629)
Q Consensus       554 DiR~AInlLq~~~~~  568 (629)
                      ++|.+.+.++.+...
T Consensus       225 n~reL~~~l~~~~~~  239 (265)
T 2bjv_A          225 NIRELKNVVERSVYR  239 (265)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999976543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.65  E-value=5.4e-16  Score=174.08  Aligned_cols=187  Identities=13%  Similarity=0.152  Sum_probs=125.3

Q ss_pred             CcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742          358 NGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN  431 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn  431 (629)
                      ++++|+++++..+.+.+.      ....++++|+||||||||++|++||..+. ..                   +..++
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~-------------------~~~i~  140 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG-RK-------------------FVRIS  140 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT-CE-------------------EEEEC
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC-CC-------------------eEEEE
Confidence            568999999988877664      22344799999999999999999999973 32                   23333


Q ss_pred             cccchhhH-------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH----HHHHHHHHHhccC------------
Q 036742          432 VNLQANAK-------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH----IQYLIKWIMDGYT------------  488 (629)
Q Consensus       432 as~~~~~k-------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~----~q~aLlrilEe~~------------  488 (629)
                      +.......       ..+......+...+.... ..+.||||||||.+...    .++.|+++++...            
T Consensus       141 ~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~  219 (543)
T 3m6a_A          141 LGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEET  219 (543)
T ss_dssp             CCC--------------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred             ecccchhhhhhhHHHHHhccCchHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCee
Confidence            32110000       000011111122222221 22349999999999776    4588888886432            


Q ss_pred             ---CCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHHHHHHHcc--C
Q 036742          489 ---DSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RKE-----DFDLSMTFAAKIATKAK--Q  553 (629)
Q Consensus       489 ---~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~ke-----gl~is~e~L~~Ia~~s~--G  553 (629)
                         .++.||++||..+.++++|++||.++.|++|+.++...++...+     ...     .+.++++++..|+..+.  |
T Consensus       220 ~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~  299 (543)
T 3m6a_A          220 FDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA  299 (543)
T ss_dssp             CBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred             ecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence               45789999999999999999999999999999999999888765     222     45678999999887654  6


Q ss_pred             CHHHHHHHHHHH
Q 036742          554 NLRKAIMALEAC  565 (629)
Q Consensus       554 DiR~AInlLq~~  565 (629)
                      ++|.+-+.++.+
T Consensus       300 ~vR~L~~~i~~~  311 (543)
T 3m6a_A          300 GVRSLERQLAAI  311 (543)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            788777766653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.65  E-value=1.8e-16  Score=184.39  Aligned_cols=175  Identities=18%  Similarity=0.215  Sum_probs=126.9

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+++++.|++++.-           |  ...+||||||||||||++|++||+++ +..            
T Consensus       199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-g~~------------  265 (806)
T 3cf2_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF------------  265 (806)
T ss_dssp             SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-TCE------------
T ss_pred             CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCe------------
Confidence            346789999999999999988741           2  23489999999999999999999986 332            


Q ss_pred             cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHH
Q 036742          420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIM  484 (629)
Q Consensus       420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlril  484 (629)
                             ++++++.+    ..+.   ....++++   |.......++||||||+|.+.           ....+.|+..|
T Consensus       266 -------~~~v~~~~l~sk~~ge---se~~lr~l---F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~m  332 (806)
T 3cf2_A          266 -------FFLINGPEIMSKLAGE---SESNLRKA---FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM  332 (806)
T ss_dssp             -------EEEEEHHHHHSSCTTH---HHHHHHHH---HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHH
T ss_pred             -------EEEEEhHHhhcccchH---HHHHHHHH---HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHH
Confidence                   56777642    2221   12333333   333334567899999999983           23556677777


Q ss_pred             hccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742          485 DGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN  554 (629)
Q Consensus       485 Ee~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD  554 (629)
                      +...  ..+.+|.+||.++.|+++|++  || ..|+|+.|+.++..++|+.++.+..+. ++..+..|+..+.|-
T Consensus       333 dg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf  406 (806)
T 3cf2_A          333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH  406 (806)
T ss_dssp             HHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred             hcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence            7554  456788899999999999998  77 479999999999999998766543322 233478888888764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.65  E-value=1.7e-15  Score=168.31  Aligned_cols=219  Identities=16%  Similarity=0.109  Sum_probs=145.2

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW  413 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~  413 (629)
                      .+|.+. .+.+|+||+|+++++..|++++..           .. .+++||+||||||||+||++||.++. ..      
T Consensus        20 ~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-~~------   91 (499)
T 2dhr_A           20 RVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP------   91 (499)
T ss_dssp             EEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CC------
T ss_pred             eeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-CC------
Confidence            445455 778999999999999888887741           11 23799999999999999999999863 22      


Q ss_pred             CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742          414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL  479 (629)
Q Consensus       414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a  479 (629)
                                   ++.+++.+.....  .......+...|........+|+||||||.+..              ...+.
T Consensus        92 -------------~i~i~g~~~~~~~--~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~  156 (499)
T 2dhr_A           92 -------------FITASGSDFVEMF--VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ  156 (499)
T ss_dssp             -------------EEEEEGGGGTSSC--TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH
T ss_pred             -------------EEEEehhHHHHhh--hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH
Confidence                         4666664221100  001112223334443334457999999998731              23345


Q ss_pred             HHHHHhccC--CCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccC
Q 036742          480 IKWIMDGYT--DSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQ  553 (629)
Q Consensus       480 LlrilEe~~--~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~G  553 (629)
                      |+..++...  ..+.+|.++|.++.+++++.+++   ..+.|..|+.+++.++|+..+.  ++.+++++ +..|+..+.|
T Consensus       157 LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G  234 (499)
T 2dhr_A          157 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPG  234 (499)
T ss_dssp             HHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCS
T ss_pred             HHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCC
Confidence            555555443  33566777888888999999854   4799999999999999986654  34555444 8889999999


Q ss_pred             CH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          554 NL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       554 Di-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                      +. |.+.+++..+...+...........++++++..+
T Consensus       235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v  271 (499)
T 2dhr_A          235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV  271 (499)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence            88 7888888776554432222234445666655554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.65  E-value=3.1e-15  Score=150.41  Aligned_cols=193  Identities=16%  Similarity=0.126  Sum_probs=127.3

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      ..+.+.+|++|+|.++++..+++++..            ...++++|+|||||||||++++++..+. ..          
T Consensus         8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-~~----------   76 (254)
T 1ixz_A            8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP----------   76 (254)
T ss_dssp             CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-CC----------
T ss_pred             cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CC----------
Confidence            456778999999999988888776641            1124799999999999999999999863 22          


Q ss_pred             cccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHH
Q 036742          418 LVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKW  482 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlr  482 (629)
                               ++.++....... .......++.+.+...   .....++||||+|.+..              ...+.++.
T Consensus        77 ---------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~  144 (254)
T 1ixz_A           77 ---------FITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV  144 (254)
T ss_dssp             ---------EEEEEHHHHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH
T ss_pred             ---------EEEeeHHHHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH
Confidence                     455554211000 0011122333333321   22346999999998731              12334444


Q ss_pred             HHhccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-
Q 036742          483 IMDGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL-  555 (629)
Q Consensus       483 ilEe~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi-  555 (629)
                      .++....  ...++.++|.++.+++++++  |+ ..+.|..|+.++..++|+..+..  +.+++++ +..|+..+.|.. 
T Consensus       145 ~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~  222 (254)
T 1ixz_A          145 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVG  222 (254)
T ss_dssp             HHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCH
T ss_pred             HHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCH
Confidence            4543332  23566678999899999998  44 47899999999999999877643  4554443 788999998876 


Q ss_pred             HHHHHHHHHHHh
Q 036742          556 RKAIMALEACKA  567 (629)
Q Consensus       556 R~AInlLq~~~~  567 (629)
                      |.+.++++.+..
T Consensus       223 ~dl~~~~~~a~~  234 (254)
T 1ixz_A          223 ADLENLLNEAAL  234 (254)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            667677765443

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.63  E-value=4.9e-18  Score=171.87  Aligned_cols=198  Identities=13%  Similarity=0.072  Sum_probs=125.4

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV  417 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v  417 (629)
                      .++.+.+|++|+|++.+++.|.+++..            ....++||+||||||||++|+++|+++....+ .      +
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-~------v   75 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF-S------M   75 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC-C------C
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE-E------e
Confidence            456788999999999998888887751            12347999999999999999999999743321 0      0


Q ss_pred             cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH---------------HHHHHHH
Q 036742          418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH---------------IQYLIKW  482 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~---------------~q~aLlr  482 (629)
                      .+........    .......    ...+.....       ....||||||+|.+...               .++.|+.
T Consensus        76 ~~~~~~~~~~----~~~~~~~----~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~  140 (268)
T 2r62_A           76 GGSSFIEMFV----GLGASRV----RDLFETAKK-------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA  140 (268)
T ss_dssp             CSCTTTTSCS----SSCSSSS----STTHHHHHH-------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTT
T ss_pred             chHHHHHhhc----chHHHHH----HHHHHHHHh-------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHH
Confidence            0000000000    0000000    011222111       13469999999999543               2344555


Q ss_pred             HHhccC---CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742          483 IMDGYT---DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL  555 (629)
Q Consensus       483 ilEe~~---~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di  555 (629)
                      .++...   ..+.||+++|.++.+++++.+  |+ ..+.|..|+.+++.++|...+....+. ++..+..|+..+.| ..
T Consensus       141 ~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g  219 (268)
T 2r62_A          141 EMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAG  219 (268)
T ss_dssp             TTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCH
T ss_pred             HhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCH
Confidence            555432   236788889999889999988  66 578999999999999998877654332 22236667777766 34


Q ss_pred             HHHHHHHHHHHhcCC
Q 036742          556 RKAIMALEACKALNY  570 (629)
Q Consensus       556 R~AInlLq~~~~~~~  570 (629)
                      |.+.++++.+...+.
T Consensus       220 ~dl~~l~~~a~~~a~  234 (268)
T 2r62_A          220 ADLANIINEAALLAG  234 (268)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566666666655443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.61  E-value=1.5e-14  Score=147.74  Aligned_cols=190  Identities=16%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      .+.+|++|+|.++++..+++++..            ...++++|+|||||||||++++|+..+. ..             
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-~~-------------  100 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP-------------  100 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-CC-------------
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-CC-------------
Confidence            677899999999988888776641            1123699999999999999999999863 22             


Q ss_pred             ccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH---Hh
Q 036742          421 VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI---MD  485 (629)
Q Consensus       421 i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri---lE  485 (629)
                            ++.+++.+.... .......+..+.+...   .....++||||+|.+..           .....+..+   ++
T Consensus       101 ------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls  171 (278)
T 1iy2_A          101 ------FITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD  171 (278)
T ss_dssp             ------EEEEEHHHHHHSTTTHHHHHHHHHHHHHH---TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred             ------EEEecHHHHHHHHhhHHHHHHHHHHHHHH---hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence                  455554321000 0011122333333221   12346999999998731           122333333   33


Q ss_pred             ccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-HHH
Q 036742          486 GYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL-RKA  558 (629)
Q Consensus       486 e~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi-R~A  558 (629)
                      ....  ...++.++|.++.+++++.+  |+ ..+.|..|+.++..++|+..+..  +.+++++ +..|+..+.|+. |.+
T Consensus       172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl  249 (278)
T 1iy2_A          172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADL  249 (278)
T ss_dssp             TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred             CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHH
Confidence            2222  24566688999999999998  44 47999999999999999877643  4554444 788999999977 566


Q ss_pred             HHHHHHHHh
Q 036742          559 IMALEACKA  567 (629)
Q Consensus       559 InlLq~~~~  567 (629)
                      .++++.+..
T Consensus       250 ~~l~~~a~~  258 (278)
T 1iy2_A          250 ENLLNEAAL  258 (278)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666765543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.60  E-value=1.1e-14  Score=169.12  Aligned_cols=183  Identities=16%  Similarity=0.210  Sum_probs=132.5

Q ss_pred             CcccccHHHHHHHHHHHHc---C------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVD---G------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~---g------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      .+|+|++++++.|..++..   |      ...++||+||||||||++|+++|+.+ +..                   ++
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~-------------------~~  517 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIE-------------------LL  517 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCE-------------------EE
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCC-------------------EE
Confidence            4689999999988888752   1      12379999999999999999999997 332                   34


Q ss_pred             EEecccch--------------hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQA--------------NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~--------------~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++++...              +........+.+....      ..+.||||||||.+..+.++.|+++++...      
T Consensus       518 ~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g  591 (758)
T 1r6b_X          518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG  591 (758)
T ss_dssp             EEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred             EEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCC
Confidence            44442110              1110000111111111      225699999999999999999999999642      


Q ss_pred             -----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhc--
Q 036742          489 -----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKE--  535 (629)
Q Consensus       489 -----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ke--  535 (629)
                           .++.||++||...                         .+.++|++|| .++.|++++.+++..++...+.+.  
T Consensus       592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~  671 (758)
T 1r6b_X          592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV  671 (758)
T ss_dssp             EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence                 4567999999743                         5678999999 789999999999999988876532  


Q ss_pred             -------CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 036742          536 -------DFDLSMTFAAKIATKA---KQNLRKAIMALEACK  566 (629)
Q Consensus       536 -------gl~is~e~L~~Ia~~s---~GDiR~AInlLq~~~  566 (629)
                             .+.+++++++.|++.+   ++++|.+.++++.+.
T Consensus       672 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~  712 (758)
T 1r6b_X          672 QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL  712 (758)
T ss_dssp             HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred             HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence                   3568999999999876   555888888877654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.60  E-value=4.8e-15  Score=172.21  Aligned_cols=184  Identities=15%  Similarity=0.209  Sum_probs=132.3

Q ss_pred             CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ++|+|++.+++.|...+....         ..++||+||||||||++|+++|..+++...                 .++
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~-----------------~~i  553 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE-----------------SMI  553 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT-----------------CEE
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-----------------ceE
Confidence            568999999999988886321         126999999999999999999999865432                 267


Q ss_pred             EEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEEEEEe
Q 036742          429 ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKLILCC  497 (629)
Q Consensus       429 eInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~ILit  497 (629)
                      .++++............+.+....      ..+.||||||||.+..+.++.|+++++..           ..++.||++|
T Consensus       554 ~i~~s~~~~~~~~~~~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt  627 (758)
T 3pxi_A          554 RIDMSEYMEKHSTSGGQLTEKVRR------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS  627 (758)
T ss_dssp             EEEGGGGCSSCCCC---CHHHHHH------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred             EEechhcccccccccchhhHHHHh------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence            777753221100000111111111      12459999999999999999999999973           3567899999


Q ss_pred             cCCcc------------chHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHH---cc
Q 036742          498 EDDVD------------IIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK---------EDFDLSMTFAAKIATK---AK  552 (629)
Q Consensus       498 N~~~~------------I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k---------egl~is~e~L~~Ia~~---s~  552 (629)
                      |....            +.++|.+|| .++.|++|+.+++..++...+.+         ..+.+++++++.|++.   ..
T Consensus       628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~  707 (758)
T 3pxi_A          628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLE  707 (758)
T ss_dssp             SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTT
T ss_pred             CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCC
Confidence            96443            678999999 89999999999999988876643         2356799999999875   35


Q ss_pred             CCHHHHHHHHHH
Q 036742          553 QNLRKAIMALEA  564 (629)
Q Consensus       553 GDiR~AInlLq~  564 (629)
                      |++|.+-+.++.
T Consensus       708 ~~~R~L~~~i~~  719 (758)
T 3pxi_A          708 YGARPLRRAIQK  719 (758)
T ss_dssp             TTTTTHHHHHHH
T ss_pred             CCChHHHHHHHH
Confidence            777777777764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.59  E-value=5e-15  Score=157.18  Aligned_cols=190  Identities=16%  Similarity=0.190  Sum_probs=126.7

Q ss_pred             CcccccHHHHHHHHHHHH-------------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          358 NGFICHRHEAQLLKELVV-------------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~-------------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      +.|+|++.+++.|..++.             ..  ...++||+||||||||++|++||+.+. ..               
T Consensus        15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-~~---------------   78 (363)
T 3hws_A           15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-VP---------------   78 (363)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-CC---------------
T ss_pred             hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-CC---------------
Confidence            347999999999988883             11  234899999999999999999999973 22               


Q ss_pred             CCcceEEEecccch---hhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHH--------------HHHHHHHHH
Q 036742          423 SSAHHVELNVNLQA---NAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEH--------------IQYLIKWIM  484 (629)
Q Consensus       423 sS~~vleInas~~~---~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~--------------~q~aLlril  484 (629)
                          ++.+++....   .........+.......... ....+.||||||||.+...              .++.|+++|
T Consensus        79 ----~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~l  154 (363)
T 3hws_A           79 ----FTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI  154 (363)
T ss_dssp             ----EEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHH
T ss_pred             ----EEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHh
Confidence                5667764211   11111112233332222111 1123459999999999654              899999999


Q ss_pred             hc---------------------cCCCcEEEEEecCC----------cc-------------------------------
Q 036742          485 DG---------------------YTDSCKLILCCEDD----------VD-------------------------------  502 (629)
Q Consensus       485 Ee---------------------~~~~~~~ILitN~~----------~~-------------------------------  502 (629)
                      +.                     ...+..||++++..          ..                               
T Consensus       155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l  234 (363)
T 3hws_A          155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL  234 (363)
T ss_dssp             HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred             cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence            82                     12445677777743          11                               


Q ss_pred             ----chHHHhhcceE-eeccCCCHHHHHHHHHH----HH-------HhcC--CCCCHHHHHHHHHH---ccCCHHHHHHH
Q 036742          503 ----IIESVKTHCKV-IKVDPPVTHEIMEVLIQ----IA-------RKED--FDLSMTFAAKIATK---AKQNLRKAIMA  561 (629)
Q Consensus       503 ----I~~aLrSR~~~-I~F~ppt~eei~~iL~~----i~-------~keg--l~is~e~L~~Ia~~---s~GDiR~AInl  561 (629)
                          +.++|.+|+.. +.|.+|+.+++..++..    ++       ...+  +.+++++++.|++.   .++++|.+-+.
T Consensus       235 ~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~  314 (363)
T 3hws_A          235 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSI  314 (363)
T ss_dssp             HHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHH
T ss_pred             HHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHH
Confidence                57889999964 56999999998888764    22       2123  45799999999865   35677888888


Q ss_pred             HHHHHh
Q 036742          562 LEACKA  567 (629)
Q Consensus       562 Lq~~~~  567 (629)
                      ++.+..
T Consensus       315 ie~~~~  320 (363)
T 3hws_A          315 VEAALL  320 (363)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.59  E-value=4.5e-16  Score=181.08  Aligned_cols=183  Identities=17%  Similarity=0.158  Sum_probs=112.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+++++.|++.+.-           |  ...++|||||||||||++|+++|.++ +..            
T Consensus       472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~------------  538 (806)
T 3cf2_A          472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN------------  538 (806)
T ss_dssp             CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCE------------
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-CCc------------
Confidence            456789999999999999988741           1  23479999999999999999999996 333            


Q ss_pred             cccCCcceEEEecc----cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHH
Q 036742          420 PVASSAHHVELNVN----LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIK  481 (629)
Q Consensus       420 ~i~sS~~vleInas----~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLl  481 (629)
                             ++.+..+    .+.|..   +..+++   .|..+....++||||||||.+..              ...+.|+
T Consensus       539 -------f~~v~~~~l~s~~vGes---e~~vr~---lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL  605 (806)
T 3cf2_A          539 -------FISIKGPELLTMWFGES---EANVRE---IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL  605 (806)
T ss_dssp             -------EEECCHHHHHTTTCSSC---HHHHHH---HHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred             -------eEEeccchhhccccchH---HHHHHH---HHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence                   3444432    111211   122333   23333344568999999999832              1356677


Q ss_pred             HHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc----
Q 036742          482 WIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK----  552 (629)
Q Consensus       482 rilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~----  552 (629)
                      ..|+...  ..+.||.+||.++.|+++|++  |+ ..|+|+.|+.++..++|+.++.+..+. .+..+..|++.+.    
T Consensus       606 ~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SG  684 (806)
T 3cf2_A          606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSG  684 (806)
T ss_dssp             HHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC---------------
T ss_pred             HHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCH
Confidence            7787554  345566789999999999998  88 578899999999999888776554332 2234667776654    


Q ss_pred             CCHHHHHHHH
Q 036742          553 QNLRKAIMAL  562 (629)
Q Consensus       553 GDiR~AInlL  562 (629)
                      .||..+++..
T Consensus       685 adi~~l~~~A  694 (806)
T 3cf2_A          685 ADLTEICQRA  694 (806)
T ss_dssp             -CHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4776655543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.55  E-value=5.2e-14  Score=146.67  Aligned_cols=193  Identities=17%  Similarity=0.145  Sum_probs=129.0

Q ss_pred             CcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          358 NGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      ++|+|+......+.+.+..  ....++||+||||||||++|++|+.......                 ..++.+++...
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~-----------------~~~v~v~~~~~   64 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD-----------------RPLVTLNCAAL   64 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS-----------------SCCCEEECSSC
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC-----------------CCeEEEeCCCC
Confidence            4688988888777777753  3345799999999999999999998752211                 12566776432


Q ss_pred             hhhHHHHHH-HHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742          436 ANAKYALMG-LVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL  495 (629)
Q Consensus       436 ~~~k~~l~~-~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL  495 (629)
                      ...  .+.. ++......|....        ...+.+|||||||.|....+..|+++++...           ..++||+
T Consensus        65 ~~~--l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~  142 (304)
T 1ojl_A           65 NES--LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA  142 (304)
T ss_dssp             CHH--HHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred             ChH--HHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence            211  1111 1100000000000        0123599999999999999999999998642           4578999


Q ss_pred             EecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742          496 CCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED---FDLSMTFAAKIATKA-KQNLR  556 (629)
Q Consensus       496 itN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg---l~is~e~L~~Ia~~s-~GDiR  556 (629)
                      +||..-       .+.+.|.+|+.  .+.++++.  .+++..++..    .+.+.+   ..++++++..|.... .||+|
T Consensus       143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvR  222 (304)
T 1ojl_A          143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIR  222 (304)
T ss_dssp             EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHH
T ss_pred             ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHH
Confidence            999752       25678888974  46677776  4555554444    333333   568999999999987 89999


Q ss_pred             HHHHHHHHHHhcC
Q 036742          557 KAIMALEACKALN  569 (629)
Q Consensus       557 ~AInlLq~~~~~~  569 (629)
                      .+.+.++.+....
T Consensus       223 eL~~~l~~~~~~~  235 (304)
T 1ojl_A          223 ELENAIERAVVLL  235 (304)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999876643

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.55  E-value=1.2e-13  Score=147.05  Aligned_cols=201  Identities=18%  Similarity=0.175  Sum_probs=132.0

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHH-H---cC---CCCeEEE--EcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELV-V---DG---NCPHILI--KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP  420 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L-~---~g---~~p~ILL--~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~  420 (629)
                      ..|.|   ++++|.+..++.|..++ .   .+   ...+++|  +||+|+|||++|+++++.+......           
T Consensus        17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~-----------   82 (412)
T 1w5s_A           17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK-----------   82 (412)
T ss_dssp             TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHH-----------
T ss_pred             CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhc-----------
Confidence            45666   78999999888888887 4   23   4457889  9999999999999999887431000           


Q ss_pred             ccCCcceEEEecccchhhHHHHHHHHHH------------------HHHHhccCcCCCCeEEEEEccchhhH------HH
Q 036742          421 VASSAHHVELNVNLQANAKYALMGLVKE------------------IRDNLAITPEVSNAMIVIYEVDKAAE------HI  476 (629)
Q Consensus       421 i~sS~~vleInas~~~~~k~~l~~~lre------------------i~~~~~~~~~~~~kVIIIDEID~Ls~------~~  476 (629)
                      ......++.+++........++..++..                  +...+.  ......||||||+|.+..      +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~~~~~~  160 (412)
T 1w5s_A           83 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSPRIAAED  160 (412)
T ss_dssp             TTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCTTSCHHH
T ss_pred             cCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhccCcchHH
Confidence            0000125666653222222122222111                  111111  112345999999999853      55


Q ss_pred             HHHHHHHHhccC-----CCcEEEEEecCCcc---ch---HHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcC--CCCCHH
Q 036742          477 QYLIKWIMDGYT-----DSCKLILCCEDDVD---II---ESVKTHC-KVIKVDPPVTHEIMEVLIQIARKED--FDLSMT  542 (629)
Q Consensus       477 q~aLlrilEe~~-----~~~~~ILitN~~~~---I~---~aLrSR~-~~I~F~ppt~eei~~iL~~i~~keg--l~is~e  542 (629)
                      ...|.+.++...     ..+.+|++++....   +.   +.+.+++ ..+.|.+++.+++.++|...+...+  ..++++
T Consensus       161 l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~  240 (412)
T 1w5s_A          161 LYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR  240 (412)
T ss_dssp             HHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred             HHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH
Confidence            666666666543     45668888876542   33   5566665 3499999999999999988765432  257899


Q ss_pred             HHHHHHHHcc------CCHHHHHHHHHHHH
Q 036742          543 FAAKIATKAK------QNLRKAIMALEACK  566 (629)
Q Consensus       543 ~L~~Ia~~s~------GDiR~AInlLq~~~  566 (629)
                      ++..|++.+.      |++|.+++++..+.
T Consensus       241 ~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~  270 (412)
T 1w5s_A          241 HLELISDVYGEDKGGDGSARRAIVALKMAC  270 (412)
T ss_dssp             HHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence            9999999999      99999999987643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.54  E-value=6e-14  Score=159.26  Aligned_cols=211  Identities=11%  Similarity=0.115  Sum_probs=135.7

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc-CCcc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA-SSAH  426 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~-sS~~  426 (629)
                      ...+|+|..|++++|++.+++.+...+..|.  +++|+|||||||||+|++|++.+.......    ..+..... ....
T Consensus        31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~----~~~~~~~~~~~~p  104 (604)
T 3k1j_A           31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLED----ILVFPNPEDENMP  104 (604)
T ss_dssp             GGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEE----EEEECCTTCTTSC
T ss_pred             CcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCe----EEEeCCcccccCC
Confidence            3478999999999999999999999999874  799999999999999999999864322100    00000000 0000


Q ss_pred             eEEEecccchhhHHHHHHHH----------------------------------------------HHHHHHhcc-----
Q 036742          427 HVELNVNLQANAKYALMGLV----------------------------------------------KEIRDNLAI-----  455 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~l----------------------------------------------rei~~~~~~-----  455 (629)
                      .+.+.+. ... . .+.+..                                              .++......     
T Consensus       105 ~i~~~p~-g~~-~-~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~  181 (604)
T 3k1j_A          105 RIKTVPA-CQG-R-RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS  181 (604)
T ss_dssp             EEEEEET-THH-H-HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred             cEEEEec-chH-H-HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence            1111110 000 0 000000                                              000000000     


Q ss_pred             --C-------------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc---------------------CCCcEEEEEecC
Q 036742          456 --T-------------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY---------------------TDSCKLILCCED  499 (629)
Q Consensus       456 --~-------------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~---------------------~~~~~~ILitN~  499 (629)
                        .             ....+.+|||||++.|....++.|++.|+..                     +.+++||+++|.
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~  261 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNL  261 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCH
Confidence              0             0012349999999999999999999999832                     135679999997


Q ss_pred             C--ccchHHHhhcc----eEeeccCC---CHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHc---cC-------CH
Q 036742          500 D--VDIIESVKTHC----KVIKVDPP---VTHEIMEVLIQIARK-----EDFDLSMTFAAKIATKA---KQ-------NL  555 (629)
Q Consensus       500 ~--~~I~~aLrSR~----~~I~F~pp---t~eei~~iL~~i~~k-----egl~is~e~L~~Ia~~s---~G-------Di  555 (629)
                      .  ..++++|++||    ..+.|...   ..+.+..++..++..     ....++++++..|++.+   .|       +.
T Consensus       262 ~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~  341 (604)
T 3k1j_A          262 DTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRL  341 (604)
T ss_dssp             HHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCH
T ss_pred             HHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCH
Confidence            6  56899999999    45666432   445566666555443     22578999999998876   45       59


Q ss_pred             HHHHHHHHHHHh
Q 036742          556 RKAIMALEACKA  567 (629)
Q Consensus       556 R~AInlLq~~~~  567 (629)
                      |.+.++++.+..
T Consensus       342 R~l~~llr~A~~  353 (604)
T 3k1j_A          342 RDLGGIVRAAGD  353 (604)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.54  E-value=2e-13  Score=141.34  Aligned_cols=153  Identities=14%  Similarity=0.145  Sum_probs=96.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHh-ccCc
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNL-AITP  457 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~-~~~~  457 (629)
                      .++|||||||||||++|++||+++ +..                   ++.++++..... .......+++..... ....
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l-~~~-------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~   96 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKM-GIN-------------------PIMMSAGELESGNAGEPAKLIRQRYREAAEIIR   96 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHH-TCC-------------------CEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-CCC-------------------EEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh
Confidence            379999999999999999999998 443                   466666321110 001112222222221 1112


Q ss_pred             CCCCeEEEEEccchhhH-------------HHHHHHHHHHhc-------------cCCCcEEEEEecCCccchHHHhh--
Q 036742          458 EVSNAMIVIYEVDKAAE-------------HIQYLIKWIMDG-------------YTDSCKLILCCEDDVDIIESVKT--  509 (629)
Q Consensus       458 ~~~~kVIIIDEID~Ls~-------------~~q~aLlrilEe-------------~~~~~~~ILitN~~~~I~~aLrS--  509 (629)
                      ...++||||||||.+..             ..++.|+.+++.             ....+.||+|||.++.+++++++  
T Consensus        97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~  176 (293)
T 3t15_A           97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG  176 (293)
T ss_dssp             TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHH
T ss_pred             cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCC
Confidence            34567999999998844             245788888762             22467899999999999999986  


Q ss_pred             cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742          510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL  555 (629)
Q Consensus       510 R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di  555 (629)
                      |+..+.+ .|+.++..++++.++...++  +.+.+..++....| ++
T Consensus       177 R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l  220 (293)
T 3t15_A          177 RMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI  220 (293)
T ss_dssp             HEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred             CCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence            6654334 46999999999988876654  56666666665544 44

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.52  E-value=3.2e-14  Score=167.59  Aligned_cols=189  Identities=11%  Similarity=0.148  Sum_probs=133.1

Q ss_pred             CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ++|+|++.+++.|...+....         ..++||+||||||||++|++|+..+.+...                 .++
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~-----------------~~i  620 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE-----------------AMI  620 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGG-----------------GEE
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-----------------cEE
Confidence            568999999999988886321         137999999999999999999999865321                 245


Q ss_pred             EEecccchh---hHHHH--------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---------
Q 036742          429 ELNVNLQAN---AKYAL--------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------  488 (629)
Q Consensus       429 eInas~~~~---~k~~l--------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------  488 (629)
                      .++++....   ...++        .+..+.+......   ..+.||||||||.+..+.++.|+++++...         
T Consensus       621 ~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~v  697 (854)
T 1qvr_A          621 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTV  697 (854)
T ss_dssp             EECTTTCCSSGGGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred             EEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEe
Confidence            555532110   00000        0000111111111   124699999999999999999999999642         


Q ss_pred             --CCcEEEEEecCC--------------------------ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh-----
Q 036742          489 --DSCKLILCCEDD--------------------------VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK-----  534 (629)
Q Consensus       489 --~~~~~ILitN~~--------------------------~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k-----  534 (629)
                        .++.||++||..                          ..+.++|.+|| .++.|.|++.+++..++...+.+     
T Consensus       698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~  777 (854)
T 1qvr_A          698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARL  777 (854)
T ss_dssp             ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence              355689999962                          12457888999 78899999999999888776542     


Q ss_pred             ----cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 036742          535 ----EDFDLSMTFAAKIATKAK---QNLRKAIMALEACK  566 (629)
Q Consensus       535 ----egl~is~e~L~~Ia~~s~---GDiR~AInlLq~~~  566 (629)
                          ..+.+++++++.|+..+.   |++|.+.+.++.+.
T Consensus       778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~  816 (854)
T 1qvr_A          778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL  816 (854)
T ss_dssp             HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred             HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence                134689999999999875   99999998887653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.49  E-value=2.7e-13  Score=139.34  Aligned_cols=175  Identities=17%  Similarity=0.135  Sum_probs=107.4

Q ss_pred             CCCCCCcccccHHHHHHHHHHHH----------c---CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          353 QPSSLNGFICHRHEAQLLKELVV----------D---GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~----------~---g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      ...+|+||+|.+++++.|++.+.          .   ...++++|+||||||||++|++||.++ +..            
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~~~------------   71 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-GLN------------   71 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-TCE------------
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-CCC------------
Confidence            34678999999999999988652          1   122479999999999999999999986 332            


Q ss_pred             cccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhcc
Q 036742          420 PVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGY  487 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~  487 (629)
                             ++.++....... .......++.+.+..   ......|+|+||+|.+..           ...+.+...|+..
T Consensus        72 -------~i~i~g~~l~~~~~~~~~~~i~~vf~~a---~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg  141 (274)
T 2x8a_A           72 -------FISVKGPELLNMYVGESERAVRQVFQRA---KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL  141 (274)
T ss_dssp             -------EEEEETTTTCSSTTHHHHHHHHHHHHHH---HHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC
T ss_pred             -------EEEEEcHHHHhhhhhHHHHHHHHHHHHH---HhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc
Confidence                   355554221100 001122233333221   122346999999998731           1233444445433


Q ss_pred             C--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHH
Q 036742          488 T--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKE-DFDLS-MTFAAKIATK  550 (629)
Q Consensus       488 ~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~ke-gl~is-~e~L~~Ia~~  550 (629)
                      .  ..+.++.++|.++.|++++++  |+ ..|.|+.|+.++..++|+.++... ...+. +..+..|+..
T Consensus       142 ~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~  211 (274)
T 2x8a_A          142 EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD  211 (274)
T ss_dssp             CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred             cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence            2  234566789999999999998  77 578899999999999998876542 22222 2236666653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.49  E-value=4.8e-13  Score=148.73  Aligned_cols=203  Identities=12%  Similarity=0.100  Sum_probs=128.1

Q ss_pred             CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742          358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN  437 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~  437 (629)
                      ..|+|++++++.+...+..+.  ++||+||||||||++|++||..+.....                  +..+++.... 
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~~~------------------f~~~~~~~~t-   80 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARA------------------FEYLMTRFST-   80 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSCCE------------------EEEECCTTCC-
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhhhH------------------HHHHHHhcCC-
Confidence            678999999999988888764  8999999999999999999997622111                  1222221000 


Q ss_pred             hHHHHHH-HHHHH--HHHhccCcCC---CCeEEEEEccchhhHHHHHHHHHHHhccC---------CCcE-EEEEecCCc
Q 036742          438 AKYALMG-LVKEI--RDNLAITPEV---SNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------DSCK-LILCCEDDV  501 (629)
Q Consensus       438 ~k~~l~~-~lrei--~~~~~~~~~~---~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------~~~~-~ILitN~~~  501 (629)
                      ...++.. .....  ...+.....+   ...|||||||+.+....++.|+..|++..         ...+ +|++||...
T Consensus        81 ~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp  160 (500)
T 3nbx_X           81 PEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP  160 (500)
T ss_dssp             HHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred             HHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence            0000000 00000  1111111111   34599999999999999999999997432         1223 478888644


Q ss_pred             c---chHHHhhcce-EeeccCCCH-HHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHHc--
Q 036742          502 D---IIESVKTHCK-VIKVDPPVT-HEIMEVLIQIA-----------------------RKEDFDLSMTFAAKIATKA--  551 (629)
Q Consensus       502 ~---I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~-----------------------~kegl~is~e~L~~Ia~~s--  551 (629)
                      .   +.+++.+|+. .+.+++|+. ++...+|...+                       .-.++.++++++++|++..  
T Consensus       161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~  240 (500)
T 3nbx_X          161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ  240 (500)
T ss_dssp             CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence            3   5679999984 478888887 55666665432                       1235778999999998776  


Q ss_pred             --------cCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742          552 --------KQNLRKAIMALEACKALNYPFADDQPIPLG  581 (629)
Q Consensus       552 --------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~  581 (629)
                              ..+.|.++.++..+.+.+.....+...+.+
T Consensus       241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eD  278 (500)
T 3nbx_X          241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD  278 (500)
T ss_dssp             HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGG
T ss_pred             hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchH
Confidence                    457899888887665544433333334443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.43  E-value=1.2e-12  Score=143.39  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=77.3

Q ss_pred             eEEEEEccchhh------------HHHHHHHHHHHhcc----------CCCcEEEEEe----cCCccchHHHhhcceE-e
Q 036742          462 AMIVIYEVDKAA------------EHIQYLIKWIMDGY----------TDSCKLILCC----EDDVDIIESVKTHCKV-I  514 (629)
Q Consensus       462 kVIIIDEID~Ls------------~~~q~aLlrilEe~----------~~~~~~ILit----N~~~~I~~aLrSR~~~-I  514 (629)
                      .||++||+|.+.            .++|.+|++++|..          .+++.||+++    ..+..++++|++|+-+ +
T Consensus       252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i  331 (444)
T 1g41_A          252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV  331 (444)
T ss_dssp             CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred             CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence            399999999994            24788999999952          4556677776    2345577999999966 8


Q ss_pred             eccCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHHHHH
Q 036742          515 KVDPPVTHEIMEVLIQ-----------IARKED--FDLSMTFAAKIATKA--------KQNLRKAIMALEAC  565 (629)
Q Consensus       515 ~F~ppt~eei~~iL~~-----------i~~keg--l~is~e~L~~Ia~~s--------~GDiR~AInlLq~~  565 (629)
                      .|++|+.+++..|+..           .+..++  +.++++++..|++.+        +...|.+-+.++.+
T Consensus       332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~  403 (444)
T 1g41_A          332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL  403 (444)
T ss_dssp             ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHH
Confidence            9999999999999831           222233  467899999999862        46677777766653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.35  E-value=3.1e-13  Score=153.33  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=97.4

Q ss_pred             CcccccHHHHHHHHHHHHcCCCC-----------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742          358 NGFICHRHEAQLLKELVVDGNCP-----------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g~~p-----------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      ..|+|+++++..|.-++..|..+           |+||+||||||||++|+++|+.+. ...+.      ........+.
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~-r~~~~------~~~~~~~~~l  367 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP-RAVYT------TGKGSTAAGL  367 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS-CEECC------CTTCSTTTTS
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC-Cceec------CCCccccccc
Confidence            57899999988887777666311           799999999999999999998752 21100      0000001111


Q ss_pred             eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEE
Q 036742          427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKL  493 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~  493 (629)
                      ...+......+.... .  -..+.       ...+.||||||+|.+....+++|+..||...             ..+.|
T Consensus       368 ~~~~~~~~~~g~~~~-~--~G~l~-------~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v  437 (595)
T 3f9v_A          368 TAAVVREKGTGEYYL-E--AGALV-------LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV  437 (595)
T ss_dssp             EEECSSGGGTSSCSE-E--ECHHH-------HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred             cceeeeccccccccc-c--CCeeE-------ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence            111000000000000 0  00000       0123599999999999999999999998532             34668


Q ss_pred             EEEecCCc-------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHH
Q 036742          494 ILCCEDDV-------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       494 ILitN~~~-------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~  533 (629)
                      |+++|...             .+.++|.+|| .++.+.+++..+...++..++.
T Consensus       438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~  491 (595)
T 3f9v_A          438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD  491 (595)
T ss_dssp             EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred             EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999865             7889999999 5555655555444455555443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.34  E-value=5.1e-12  Score=117.02  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=88.6

Q ss_pred             cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      +|+|+...++.+.+.+..  ....++||+||||||||++|++|+.......                 ..++ +++....
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~-----------------~~~v-~~~~~~~   63 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ-----------------GEFV-YRELTPD   63 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT-----------------SCCE-EEECCTT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC-----------------CCEE-EECCCCC
Confidence            678988888877777752  3345799999999999999999998642211                 1144 6664221


Q ss_pred             hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc-------cchHHHhh
Q 036742          437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV-------DIIESVKT  509 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~-------~I~~aLrS  509 (629)
                      ...     .........      .+.+|||||+|.+....+..|+.+++.....+++|++||...       .+.+.|..
T Consensus        64 ~~~-----~~~~~~~~a------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~  132 (145)
T 3n70_A           64 NAP-----QLNDFIALA------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY  132 (145)
T ss_dssp             TSS-----CHHHHHHHH------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred             cch-----hhhcHHHHc------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence            110     011111111      235899999999999999999999988778899999999753       24566777


Q ss_pred             cce--EeeccCC
Q 036742          510 HCK--VIKVDPP  519 (629)
Q Consensus       510 R~~--~I~F~pp  519 (629)
                      |+.  .|.++|+
T Consensus       133 rl~~~~i~lPpL  144 (145)
T 3n70_A          133 CFAMTQIACLPL  144 (145)
T ss_dssp             HHHHHEEECCCC
T ss_pred             HhcCCEEeCCCC
Confidence            753  4555554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.31  E-value=1.4e-11  Score=117.37  Aligned_cols=128  Identities=18%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             hhccCCCCCCcccc----cHHHHHHHHHHHHcCC---CCeEEEEcCCCCcHHHHHHHHHHHHh---CCCCCCCCCCcccc
Q 036742          349 ADKHQPSSLNGFIC----HRHEAQLLKELVVDGN---CPHILIKGQSGSGKRALAMALLHEIY---GDACWNEKWPTQVL  418 (629)
Q Consensus       349 ~eKyrP~tfddIiG----~e~~~~~Lk~~L~~g~---~p~ILL~GPPGtGKTtLAraLAkeL~---g~~~~~~~~~~~v~  418 (629)
                      +++|++.+|+++++    ++.+++.+++++..-.   ...++|+||+||||||++++++..+.   |..           
T Consensus         1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----------   69 (180)
T 3ec2_A            1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----------   69 (180)
T ss_dssp             CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------
T ss_pred             CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------
Confidence            36899999999986    4567777788876432   34799999999999999999999874   221           


Q ss_pred             ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC----cCCCCeEEEEEccc--hhhHHHHHHHHHHHhcc-CCCc
Q 036742          419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT----PEVSNAMIVIYEVD--KAAEHIQYLIKWIMDGY-TDSC  491 (629)
Q Consensus       419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~----~~~~~kVIIIDEID--~Ls~~~q~aLlrilEe~-~~~~  491 (629)
                              ++.++....      + +.+..........    ......||||||++  .+.......|..+++.. ..+.
T Consensus        70 --------~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~  134 (180)
T 3ec2_A           70 --------GYFFDTKDL------I-FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLK  134 (180)
T ss_dssp             --------CCEEEHHHH------H-HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             --------EEEEEHHHH------H-HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCC
Confidence                    233333211      0 1111111100000    00123599999998  46677777777777643 3567


Q ss_pred             EEEEEecCCcc
Q 036742          492 KLILCCEDDVD  502 (629)
Q Consensus       492 ~~ILitN~~~~  502 (629)
                      .+|++||....
T Consensus       135 ~ii~tsn~~~~  145 (180)
T 3ec2_A          135 STIITTNYSLQ  145 (180)
T ss_dssp             EEEEECCCCSC
T ss_pred             CEEEEcCCChh
Confidence            89999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.27  E-value=3.9e-12  Score=117.62  Aligned_cols=128  Identities=13%  Similarity=0.153  Sum_probs=86.7

Q ss_pred             cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      +++|+...++.+.+.+..  ....++||+||||||||++|++++... + .                   ++.+++....
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-~-~-------------------~~~~~~~~~~   63 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-T-P-------------------WVSPARVEYL   63 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-S-C-------------------EECCSSTTHH
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-C-C-------------------eEEechhhCC
Confidence            578888888777777652  334579999999999999999998764 2 1                   5666664321


Q ss_pred             hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCc-c----chHHHhhc
Q 036742          437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDV-D----IIESVKTH  510 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~-~----I~~aLrSR  510 (629)
                      .      ..........      .+.+|||||+|.+....+..|+++++.. ...+++|++||... .    +.+.|..|
T Consensus        64 ~------~~~~~~~~~a------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~r  131 (143)
T 3co5_A           64 I------DMPMELLQKA------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGL  131 (143)
T ss_dssp             H------HCHHHHHHHT------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHH
T ss_pred             h------HhhhhHHHhC------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHH
Confidence            1      1112222211      2359999999999999999999999865 35688999998642 2    55667777


Q ss_pred             ce--EeeccCC
Q 036742          511 CK--VIKVDPP  519 (629)
Q Consensus       511 ~~--~I~F~pp  519 (629)
                      +.  .+.++++
T Consensus       132 l~~~~i~lPpL  142 (143)
T 3co5_A          132 FSESVVRIPPL  142 (143)
T ss_dssp             SSSEEEEECCC
T ss_pred             hcCcEEeCCCC
Confidence            64  4555553

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.26  E-value=2.3e-10  Score=118.35  Aligned_cols=183  Identities=15%  Similarity=0.109  Sum_probs=123.6

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      |..-+.++|.+..++.|..++..+  +.++|+||+|+|||++++.+++.+ +                     ++.+++.
T Consensus         8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-~---------------------~~~~~~~   63 (350)
T 2qen_A            8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-P---------------------GILIDCR   63 (350)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-S---------------------EEEEEHH
T ss_pred             CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-C---------------------cEEEEee
Confidence            344578999999999999999876  689999999999999999999874 2                     2333331


Q ss_pred             cch------hhHHHH-----------------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchh
Q 036742          434 LQA------NAKYAL-----------------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKA  472 (629)
Q Consensus       434 ~~~------~~k~~l-----------------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~L  472 (629)
                      ...      .....+                                   .+.+..+.....   ...+.||||||++.+
T Consensus        64 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vlvlDe~~~~  140 (350)
T 2qen_A           64 ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE---ELGEFIVAFDEAQYL  140 (350)
T ss_dssp             HHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH---HHSCEEEEEETGGGG
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh---ccCCEEEEEeCHHHH
Confidence            110      000000                                   111111111000   002469999999998


Q ss_pred             hH-------HHHHHHHHHHhccCCCcEEEEEecCCccc---------hHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhc
Q 036742          473 AE-------HIQYLIKWIMDGYTDSCKLILCCEDDVDI---------IESVKTHC-KVIKVDPPVTHEIMEVLIQIARKE  535 (629)
Q Consensus       473 s~-------~~q~aLlrilEe~~~~~~~ILitN~~~~I---------~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ke  535 (629)
                      ..       +....|..+++.. ..+.+|+++.....+         ..++..|. ..+.+.+++.++..+++...+...
T Consensus       141 ~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~  219 (350)
T 2qen_A          141 RFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV  219 (350)
T ss_dssp             GGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred             hccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence            63       5566777776654 467888887643211         12233344 589999999999999999887777


Q ss_pred             CCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742          536 DFDLSMTFAAKIATKAKQNLRKAIMALEA  564 (629)
Q Consensus       536 gl~is~e~L~~Ia~~s~GDiR~AInlLq~  564 (629)
                      +..++++.+..|+..++|+...+..++..
T Consensus       220 ~~~~~~~~~~~i~~~tgG~P~~l~~~~~~  248 (350)
T 2qen_A          220 NLDVPENEIEEAVELLDGIPGWLVVFGVE  248 (350)
T ss_dssp             TCCCCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            88889999999999999999765444443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.15  E-value=1.5e-09  Score=112.23  Aligned_cols=183  Identities=14%  Similarity=0.145  Sum_probs=117.7

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      ...+.++|.+..++.|.. +..   +.++|+||+|+|||++++.+++.+...                    ++.+++..
T Consensus        10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~--------------------~~~~~~~~   65 (357)
T 2fna_A           10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP--------------------YIYLDLRK   65 (357)
T ss_dssp             CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC--------------------EEEEEGGG
T ss_pred             CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC--------------------EEEEEchh
Confidence            345789999999999998 765   689999999999999999999986321                    23333321


Q ss_pred             c--------hhhHHHHHHH---------------------------------------HHHHHHHhccCcCCCCeEEEEE
Q 036742          435 Q--------ANAKYALMGL---------------------------------------VKEIRDNLAITPEVSNAMIVIY  467 (629)
Q Consensus       435 ~--------~~~k~~l~~~---------------------------------------lrei~~~~~~~~~~~~kVIIID  467 (629)
                      .        ...-..+.+.                                       +..+...+..... .+.|||||
T Consensus        66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlD  144 (357)
T 2fna_A           66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLD  144 (357)
T ss_dssp             GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEE
T ss_pred             hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEE
Confidence            0        0000000111                                       1111111111111 25699999


Q ss_pred             ccchhhH----HHHHHHHHHHhccCCCcEEEEEecCCccch---------HHHhhcc-eEeeccCCCHHHHHHHHHHHHH
Q 036742          468 EVDKAAE----HIQYLIKWIMDGYTDSCKLILCCEDDVDII---------ESVKTHC-KVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       468 EID~Ls~----~~q~aLlrilEe~~~~~~~ILitN~~~~I~---------~aLrSR~-~~I~F~ppt~eei~~iL~~i~~  533 (629)
                      |++.+..    +....|..+.+.. ..+.+|+++.....+.         .++..|. ..+.+.+++.++..+++...+.
T Consensus       145 e~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~  223 (357)
T 2fna_A          145 EAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ  223 (357)
T ss_dssp             TGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred             CHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence            9999853    4455666666543 3678888887542111         2244454 6899999999999999988776


Q ss_pred             hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742          534 KEDFDLSMTFAAKIATKAKQNLRKAIMALEAC  565 (629)
Q Consensus       534 kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~  565 (629)
                      ..++..++.  ..|+..++|+...+..++..+
T Consensus       224 ~~~~~~~~~--~~i~~~t~G~P~~l~~~~~~~  253 (357)
T 2fna_A          224 EADIDFKDY--EVVYEKIGGIPGWLTYFGFIY  253 (357)
T ss_dssp             HHTCCCCCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred             HcCCCCCcH--HHHHHHhCCCHHHHHHHHHHH
Confidence            666666543  889999999998766555543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.11  E-value=3.1e-10  Score=116.32  Aligned_cols=137  Identities=14%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          366 EAQLLKELVVDG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       366 ~~~~Lk~~L~~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      ....|..|+... . ..+++|+||||||||++|.+||+.+...                     ..++.+.         
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~---------------------G~vn~~~---------  138 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY---------------------GCVNWTN---------  138 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE---------------------EECCTTC---------
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc---------------------ceeeccc---------
Confidence            445677777754 2 3479999999999999999999974111                     1111110         


Q ss_pred             HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh--------ccC-----CCcEEEEEecCC----------
Q 036742          444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD--------GYT-----DSCKLILCCEDD----------  500 (629)
Q Consensus       444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE--------e~~-----~~~~~ILitN~~----------  500 (629)
                             ..|.........|++ +|-+.+..++++.++.+++        .+.     ..+++|++||..          
T Consensus       139 -------~~f~l~~~~~k~i~l-~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~  210 (267)
T 1u0j_A          139 -------ENFPFNDCVDKMVIW-WEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST  210 (267)
T ss_dssp             -------SSCTTGGGSSCSEEE-ECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE
T ss_pred             -------cccccccccccEEEE-eccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc
Confidence                   011111111223555 5545555667778888887        333     567899999971          


Q ss_pred             -ccchHHHhhcceEeecc--------CCCHHHHHHHHHHHHHhcCCCCCH
Q 036742          501 -VDIIESVKTHCKVIKVD--------PPVTHEIMEVLIQIARKEDFDLSM  541 (629)
Q Consensus       501 -~~I~~aLrSR~~~I~F~--------ppt~eei~~iL~~i~~kegl~is~  541 (629)
                       ....++|++||.++.|.        +++.++....+.-+ +.+.+++++
T Consensus       211 s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~  259 (267)
T 1u0j_A          211 TFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH  259 (267)
T ss_dssp             ECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred             chhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence             24678999999999998        89999999999844 666666543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.05  E-value=4e-10  Score=108.81  Aligned_cols=131  Identities=14%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             hhhccCCCCCCcccccH----HHHHHHHHHHHcCC----CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742          348 WADKHQPSSLNGFICHR----HEAQLLKELVVDGN----CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV  419 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e----~~~~~Lk~~L~~g~----~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~  419 (629)
                      +..+|++.+|+++++..    .+++.+..++....    ..+++|+||+|||||++|++++.++.....           
T Consensus        15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~-----------   83 (202)
T 2w58_A           15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV-----------   83 (202)
T ss_dssp             SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC-----------
T ss_pred             CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------
Confidence            34678889999999743    36677778887542    168999999999999999999998753321           


Q ss_pred             cccCCcceEEEecccchh-hHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHH-HHHHHHhc-cCCCcEE
Q 036742          420 PVASSAHHVELNVNLQAN-AKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQY-LIKWIMDG-YTDSCKL  493 (629)
Q Consensus       420 ~i~sS~~vleInas~~~~-~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~-aLlrilEe-~~~~~~~  493 (629)
                            .++.+++..... ..... ...+......+.     ...+|||||++....  ..+. .|..+++. +.....+
T Consensus        84 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~  152 (202)
T 2w58_A           84 ------SSLIVYVPELFRELKHSLQDQTMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPT  152 (202)
T ss_dssp             ------CEEEEEHHHHHHHHHHC---CCCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCE
T ss_pred             ------eEEEEEhHHHHHHHHHHhccchHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCE
Confidence                  144555431100 00000 000011111111     124999999977532  2233 33334442 2356789


Q ss_pred             EEEecCC
Q 036742          494 ILCCEDD  500 (629)
Q Consensus       494 ILitN~~  500 (629)
                      |++||..
T Consensus       153 i~tsn~~  159 (202)
T 2w58_A          153 FFTSNFD  159 (202)
T ss_dssp             EEEESSC
T ss_pred             EEEcCCC
Confidence            9999865

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.01  E-value=2.5e-09  Score=114.33  Aligned_cols=192  Identities=17%  Similarity=0.214  Sum_probs=124.9

Q ss_pred             CcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742          358 NGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ  435 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~  435 (629)
                      .+++|.......+...+.  ......+||+|++||||+++|+++........                  .++.+||...
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~------------------~fv~vnc~~~  190 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG------------------AFVDLNCASI  190 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS------------------CEEEEESSSS
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC------------------CcEEEEcccC
Confidence            467887766655555543  12233699999999999999999987642211                  1678888532


Q ss_pred             hhhHHHHHHHHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742          436 ANAKYALMGLVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC  496 (629)
Q Consensus       436 ~~~k~~l~~~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi  496 (629)
                      ... ....+++......|....        ...+.+||||||+.|....|..|+++++...           .++++|++
T Consensus       191 ~~~-~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a  269 (368)
T 3dzd_A          191 PQE-LAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA  269 (368)
T ss_dssp             CTT-THHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred             ChH-HHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence            211 000111111001111110        0123489999999999999999999998532           35679999


Q ss_pred             ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHHHH----HHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742          497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEVLI----QIARKED---FDLSMTFAAKIATKA-KQNLRK  557 (629)
Q Consensus       497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~iL~----~i~~keg---l~is~e~L~~Ia~~s-~GDiR~  557 (629)
                      ||..-       .+.+.|..|+.+  |.++|+..  +++..++.    +.+.+.+   ..++++++..|.... .||+|.
T Consensus       270 t~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvre  349 (368)
T 3dzd_A          270 TNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRE  349 (368)
T ss_dssp             ESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHH
T ss_pred             cCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHH
Confidence            98642       245678888754  56777765  45554443    3344434   358999999999886 899999


Q ss_pred             HHHHHHHHHhc
Q 036742          558 AIMALEACKAL  568 (629)
Q Consensus       558 AInlLq~~~~~  568 (629)
                      +.|.++.+...
T Consensus       350 L~n~i~~~~~~  360 (368)
T 3dzd_A          350 LKNLIERAVIL  360 (368)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.95  E-value=4.2e-09  Score=104.05  Aligned_cols=118  Identities=14%  Similarity=0.217  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHcCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHH
Q 036742          364 RHEAQLLKELVVDGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY  440 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~  440 (629)
                      ...+..|+.+++.  .|   ++||+||||||||++|.++|+.+.+.-.           ..        .|....     
T Consensus        42 ~~f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~-----------~f--------ans~s~-----   95 (212)
T 1tue_A           42 ITFLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI-----------SF--------VNSTSH-----   95 (212)
T ss_dssp             HHHHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC-----------CC--------CCSSSC-----
T ss_pred             HHHHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee-----------eE--------Eeccch-----
Confidence            3446778888874  44   7999999999999999999999854311           00        011000     


Q ss_pred             HHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhccC-------------CCcEEEEEecCC---ccc
Q 036742          441 ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDGYT-------------DSCKLILCCEDD---VDI  503 (629)
Q Consensus       441 ~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe~~-------------~~~~~ILitN~~---~~I  503 (629)
                                  +........+||+|||+|.-.. .....++.+++...             ...++|+|||..   ...
T Consensus        96 ------------f~l~~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~  163 (212)
T 1tue_A           96 ------------FWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNR  163 (212)
T ss_dssp             ------------GGGGGGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSS
T ss_pred             ------------hhhcccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccc
Confidence                        0001111245999999996532 23456777777542             235899999984   335


Q ss_pred             hHHHhhcceEeeccCC
Q 036742          504 IESVKTHCKVIKVDPP  519 (629)
Q Consensus       504 ~~aLrSR~~~I~F~pp  519 (629)
                      ...|.||+..+.|+.+
T Consensus       164 ~~~L~SRi~~f~F~~~  179 (212)
T 1tue_A          164 WPYLESRITVFEFPNA  179 (212)
T ss_dssp             CHHHHTSCEEEECCSC
T ss_pred             hhhhhhhEEEEEcCCC
Confidence            6889999999999743

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.93  E-value=1.1e-08  Score=109.88  Aligned_cols=194  Identities=13%  Similarity=0.147  Sum_probs=124.6

Q ss_pred             CCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742          357 LNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       357 fddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      +..++|.....+.+.+.+..  ...-.++|+|++||||+++|+++.......                 ...++.+||..
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-----------------~~~fv~v~~~~  198 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-----------------KEPFVALNVAS  198 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-----------------TSCEEEEETTT
T ss_pred             chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-----------------CCCeEEEecCC
Confidence            46788877666666555542  222368999999999999999998763211                 12367888853


Q ss_pred             chhhHHHHH-HHHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEE
Q 036742          435 QANAKYALM-GLVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLI  494 (629)
Q Consensus       435 ~~~~k~~l~-~~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~I  494 (629)
                      ....  .+. +++......|....        ...+.+||||||+.|....|..|+++++...           .++++|
T Consensus       199 ~~~~--~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii  276 (387)
T 1ny5_A          199 IPRD--IFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL  276 (387)
T ss_dssp             SCHH--HHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred             CCHH--HHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence            2211  111 11111111111110        0124599999999999999999999998521           467899


Q ss_pred             EEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHHH----HHHHHhcCC---CCCHHHHHHHHHHc-cCCH
Q 036742          495 LCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEVL----IQIARKEDF---DLSMTFAAKIATKA-KQNL  555 (629)
Q Consensus       495 LitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~iL----~~i~~kegl---~is~e~L~~Ia~~s-~GDi  555 (629)
                      ++||..-       .+.+.|..|+.  .+.++|+-.  +++..++    .+.+.+.+.   .++++++..|.... .||+
T Consensus       277 ~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv  356 (387)
T 1ny5_A          277 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV  356 (387)
T ss_dssp             EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred             EeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence            9998742       24566777764  456666643  4544433    334444443   37899999988775 7999


Q ss_pred             HHHHHHHHHHHhcC
Q 036742          556 RKAIMALEACKALN  569 (629)
Q Consensus       556 R~AInlLq~~~~~~  569 (629)
                      |..-|.++.+....
T Consensus       357 reL~~~i~~~~~~~  370 (387)
T 1ny5_A          357 RELKNVIERAVLFS  370 (387)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999877643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.89  E-value=3.6e-09  Score=110.37  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=44.0

Q ss_pred             hccCCCCCCccccc----HHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          350 DKHQPSSLNGFICH----RHEAQLLKELVVDG---NCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       350 eKyrP~tfddIiG~----e~~~~~Lk~~L~~g---~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..+++.+|+++++.    ..++..+..|+...   ...+++|+||||||||+||.++|.++.
T Consensus       116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            56677899999863    34666777888753   245899999999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.87  E-value=2.9e-09  Score=99.51  Aligned_cols=119  Identities=18%  Similarity=0.241  Sum_probs=76.1

Q ss_pred             CCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          356 SLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       356 tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      +|++++  ++..++..|..+    ....++|+||+|+|||+|+++++..+.....                 .+++++..
T Consensus        15 ~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-----------------~~~~~~~~   73 (149)
T 2kjq_A           15 SFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK-----------------NAAYIDAA   73 (149)
T ss_dssp             CCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC-----------------CEEEEETT
T ss_pred             chhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC-----------------cEEEEcHH
Confidence            455543  355556656555    3347999999999999999999998743211                 14555553


Q ss_pred             cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-CCcE-EEEEecCCcc---chHHHh
Q 036742          434 LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-DSCK-LILCCEDDVD---IIESVK  508 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-~~~~-~ILitN~~~~---I~~aLr  508 (629)
                      .....             .+    .....||||||++.+....+..|..+++... .... +|++++....   ..+.|+
T Consensus        74 ~~~~~-------------~~----~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~  136 (149)
T 2kjq_A           74 SMPLT-------------DA----AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLR  136 (149)
T ss_dssp             TSCCC-------------GG----GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHH
T ss_pred             HhhHH-------------HH----HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHH
Confidence            22211             01    1124599999999987655777777766432 2344 8888885432   228999


Q ss_pred             hcce
Q 036742          509 THCK  512 (629)
Q Consensus       509 SR~~  512 (629)
                      +|+.
T Consensus       137 SRl~  140 (149)
T 2kjq_A          137 TRMA  140 (149)
T ss_dssp             HHGG
T ss_pred             HHHh
Confidence            9984

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.82  E-value=3e-08  Score=127.80  Aligned_cols=144  Identities=13%  Similarity=0.253  Sum_probs=96.2

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE  448 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre  448 (629)
                      .+..++..+  .++||+||||||||++|+.++..+.+.                   .++.++.+...... .+...+..
T Consensus      1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~-------------------~~~~infsa~ts~~-~~~~~i~~ 1316 (2695)
T 4akg_A         1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLY-------------------DVVGINFSKDTTTE-HILSALHR 1316 (2695)
T ss_dssp             HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSC-------------------EEEEEECCTTCCHH-HHHHHHHH
T ss_pred             HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCC-------------------ceEEEEeecCCCHH-HHHHHHHH
Confidence            455666665  389999999999999996666543221                   14566665433321 22233322


Q ss_pred             HHHH--------hccCcCCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc-
Q 036742          449 IRDN--------LAITPEVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV-  501 (629)
Q Consensus       449 i~~~--------~~~~~~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~-  501 (629)
                      ....        +.....+...||||||++....      ...+.|+.++|..   .         .++.+|.+||.+. 
T Consensus      1317 ~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~ 1396 (2695)
T 4akg_A         1317 HTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTD 1396 (2695)
T ss_dssp             HBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTS
T ss_pred             HhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCcc
Confidence            2110        0111123445999999887632      4778888888731   1         2356888999884 


Q ss_pred             ----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742          502 ----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK  534 (629)
Q Consensus       502 ----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k  534 (629)
                          .|++++.+||.++.++.|+.+++..|+..++..
T Consensus      1397 gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1397 PGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             TTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             CCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence                699999999999999999999999999888753

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=98.72  E-value=7.7e-08  Score=105.37  Aligned_cols=136  Identities=11%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             cCchhhhccCCCCCCccc-ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          344 LRPFWADKHQPSSLNGFI-CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       344 ~~~lW~eKyrP~tfddIi-G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      ...+|..||+|.+|+++- +|..++..+..++..+.. +++|.|+||||||+++.+++..+.....              
T Consensus        10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--------------   74 (459)
T 3upu_A           10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--------------   74 (459)
T ss_dssp             -----------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--------------
T ss_pred             ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--------------
Confidence            346799999999999997 788888888888887653 8999999999999999999998854321              


Q ss_pred             CCcceEEEecccchhhHHHHHHH-------HHHHHHHhc-------------cCcCCCCeEEEEEccchhhHHHHHHHHH
Q 036742          423 SSAHHVELNVNLQANAKYALMGL-------VKEIRDNLA-------------ITPEVSNAMIVIYEVDKAAEHIQYLIKW  482 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~-------lrei~~~~~-------------~~~~~~~kVIIIDEID~Ls~~~q~aLlr  482 (629)
                        ..++-+... ..... .+.+.       +..+.....             ........+|||||+..+....+..|.+
T Consensus        75 --~~il~~a~T-~~Aa~-~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~  150 (459)
T 3upu_A           75 --TGIILAAPT-HAAKK-ILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLS  150 (459)
T ss_dssp             --CCEEEEESS-HHHHH-HHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHH
T ss_pred             --ceEEEecCc-HHHHH-HHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHH
Confidence              012333222 11110 01110       011111000             0011134599999999999888888887


Q ss_pred             HHhccCCCcEEEEEecCCc
Q 036742          483 IMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       483 ilEe~~~~~~~ILitN~~~  501 (629)
                      .+.   ..+.+|++.....
T Consensus       151 ~~~---~~~~~~~vGD~~Q  166 (459)
T 3upu_A          151 TIP---PWCTIIGIGDNKQ  166 (459)
T ss_dssp             HSC---TTCEEEEEECTTS
T ss_pred             hcc---CCCEEEEECCHHH
Confidence            764   5677888876543

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.68  E-value=4.1e-07  Score=99.93  Aligned_cols=204  Identities=12%  Similarity=0.065  Sum_probs=121.2

Q ss_pred             ccccHHHHHHHHHHHHcCC-----CCeEEEEcCCCCcHHHHHHHH-HHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742          360 FICHRHEAQLLKELVVDGN-----CPHILIKGQSGSGKRALAMAL-LHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN  433 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~g~-----~p~ILL~GPPGtGKTtLAraL-AkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas  433 (629)
                      |+|++.++..|.-.+..|.     .-|+||.|+||| ||.+|+++ ++.+ ...                    .+... 
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR~--------------------~ft~g-  271 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PRG--------------------VYVDL-  271 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SSE--------------------EEEEG-
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CCe--------------------EEecC-
Confidence            8999999888887777663     128999999999 99999999 6542 111                    11100 


Q ss_pred             cchhhHHHHHHHHHHHHHHhccC-c---CCCCeEEEEEccchhhHHHHHHHHHHHhcc---------CCCcEEEEEecCC
Q 036742          434 LQANAKYALMGLVKEIRDNLAIT-P---EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY---------TDSCKLILCCEDD  500 (629)
Q Consensus       434 ~~~~~k~~l~~~lrei~~~~~~~-~---~~~~kVIIIDEID~Ls~~~q~aLlrilEe~---------~~~~~~ILitN~~  500 (629)
                      .......+... +++... +... +   ...+.|+||||++.+....+.+|+..||+.         +..+.||.++|..
T Consensus       272 ~~ss~~gLt~s-~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~  349 (506)
T 3f8t_A          272 RRTELTDLTAV-LKEDRG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG  349 (506)
T ss_dssp             GGCCHHHHSEE-EEESSS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred             CCCCccCceEE-EEcCCC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence            00000000000 000000 0000 0   012359999999999999999999999953         4667789999975


Q ss_pred             c-----------cchHHHhhcc-eEeec-cC-------------CCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHc--
Q 036742          501 V-----------DIIESVKTHC-KVIKV-DP-------------PVTHEIMEVLIQIA-RKEDFDLSMTFAAKIATKA--  551 (629)
Q Consensus       501 ~-----------~I~~aLrSR~-~~I~F-~p-------------pt~eei~~iL~~i~-~kegl~is~e~L~~Ia~~s--  551 (629)
                      .           .|.+++.+|| ..+.. ..             ++.+++++++...- ..-...+++++.++|++..  
T Consensus       350 ~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~  429 (506)
T 3f8t_A          350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET  429 (506)
T ss_dssp             C--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred             cccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence            4           6889999999 43332 22             23444555554332 1235678888888776542  


Q ss_pred             ----------------cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742          552 ----------------KQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE  588 (629)
Q Consensus       552 ----------------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e  588 (629)
                                      .-.+|..+.++..+.+.+.....+..++.|++.++.-
T Consensus       430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L  482 (506)
T 3f8t_A          430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL  482 (506)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence                            1244666666665554444333445556666555543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.48  E-value=8.7e-06  Score=91.02  Aligned_cols=181  Identities=15%  Similarity=0.165  Sum_probs=102.4

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHh--CCCCCCCCCCccccccccCCcceE
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY--GDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~--g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      -|.....++|.+..++.|..++..  +..+.++|+||+|+|||+||..++....  ...+ .              ..++
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~--------------~~v~  183 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-P--------------GGVH  183 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-T--------------TCEE
T ss_pred             CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-C--------------CceE
Confidence            456668899999999999999973  3455788999999999999999875320  0000 0              0023


Q ss_pred             EEecccchhhHHHHHHHHHHHHHHhcc-----------------------CcCCCCeEEEEEccchhhHHHHHHHHHHHh
Q 036742          429 ELNVNLQANAKYALMGLVKEIRDNLAI-----------------------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMD  485 (629)
Q Consensus       429 eInas~~~~~k~~l~~~lrei~~~~~~-----------------------~~~~~~kVIIIDEID~Ls~~~q~aLlrilE  485 (629)
                      .++...... ..++.. +..+......                       .....+.+||||+++...         .++
T Consensus       184 wv~~~~~~~-~~~~~~-l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------~l~  252 (591)
T 1z6t_A          184 WVSVGKQDK-SGLLMK-LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------VLK  252 (591)
T ss_dssp             EEEEESCCH-HHHHHH-HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------HHH
T ss_pred             EEECCCCch-HHHHHH-HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------HHH
Confidence            333221100 001111 1111111000                       001123599999998632         123


Q ss_pred             ccCCCcEEEEEecCCccchHHHhhcceEee-ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742          486 GYTDSCKLILCCEDDVDIIESVKTHCKVIK-VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA  561 (629)
Q Consensus       486 e~~~~~~~ILitN~~~~I~~aLrSR~~~I~-F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInl  561 (629)
                      .+...+.||+||....... .+......+. ..+++.++..+.+...+... ..-.++.+..|++.|+|.+--+-.+
T Consensus       253 ~l~~~~~ilvTsR~~~~~~-~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~  327 (591)
T 1z6t_A          253 AFDSQCQILLTTRDKSVTD-SVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLI  327 (591)
T ss_dssp             TTCSSCEEEEEESCGGGGT-TCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCCCeEEEECCCcHHHH-hcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHH
Confidence            3456788888887643221 1111112222 25899999999998776431 1112457888999999976544333

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.35  E-value=1.9e-05  Score=102.13  Aligned_cols=147  Identities=17%  Similarity=0.197  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHH
Q 036742          365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG  444 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~  444 (629)
                      .....|..++..+.  ++++.||+|||||++++++|+.+ |..                   ++.+||++..... .+..
T Consensus       633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-g~~-------------------~v~~nc~e~ld~~-~lg~  689 (2695)
T 4akg_A          633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-GRV-------------------VVVFNCDDSFDYQ-VLSR  689 (2695)
T ss_dssp             HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-TCC-------------------CEEEETTSSCCHH-HHHH
T ss_pred             HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-CCc-------------------EEEEECCCCCChh-HhhH
Confidence            34455556666543  68899999999999999999986 554                   4778887554432 2233


Q ss_pred             HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHH-------Hhcc-------------CCCcEEEEEec----CC
Q 036742          445 LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWI-------MDGY-------------TDSCKLILCCE----DD  500 (629)
Q Consensus       445 ~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlri-------lEe~-------------~~~~~~ILitN----~~  500 (629)
                      .+......        +..+++||++++..+++.++...       +...             ...+.+++|.|    ..
T Consensus       690 ~~~g~~~~--------Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~  761 (2695)
T 4akg_A          690 LLVGITQI--------GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGR  761 (2695)
T ss_dssp             HHHHHHHH--------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSS
T ss_pred             HHHHHHhc--------CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCc
Confidence            44443322        35899999999988877776322       2111             13455777777    34


Q ss_pred             ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 036742          501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA  545 (629)
Q Consensus       501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~  545 (629)
                      ..+.++|++||..+.+..|+.+.+.+++...   .|+........
T Consensus       762 ~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s---~Gf~~a~~la~  803 (2695)
T 4akg_A          762 SELPENLKKSFREFSMKSPQSGTIAEMILQI---MGFEDSKSLAS  803 (2695)
T ss_dssp             CCCCHHHHTTEEEEECCCCCHHHHHHHHHHH---HHCSSHHHHHH
T ss_pred             ccccHHHHhheEEEEeeCCCHHHHHHHHHHh---cCCCchHHHHH
Confidence            5689999999999999999999888886533   34543343333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.32  E-value=2.3e-05  Score=94.04  Aligned_cols=183  Identities=15%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHh--CCCCCCCCCCccccccccCCcceE
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY--GDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~--g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      -|.....++|.++.++.|.++|..  +..+.+.|+|+.|+|||+||..++....  ...++               ..++
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~---------------~~~~  183 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS---------------GGVH  183 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST---------------TCEE
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC---------------CeEE
Confidence            455668899999999999999963  3445678999999999999998886521  11110               0133


Q ss_pred             EEecccc--hhhHHHHHHHHHHHHH-----------------Hhc--cCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742          429 ELNVNLQ--ANAKYALMGLVKEIRD-----------------NLA--ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY  487 (629)
Q Consensus       429 eInas~~--~~~k~~l~~~lrei~~-----------------~~~--~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~  487 (629)
                      .++.+..  ......+..+...+..                 .+.  .....++.+||||+++...         .++.+
T Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~  254 (1249)
T 3sfz_A          184 WVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAF  254 (1249)
T ss_dssp             EEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTT
T ss_pred             EEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhh
Confidence            4443221  1111111111111110                 000  0001224599999999652         23344


Q ss_pred             CCCcEEEEEecCCccchHHHhhcceEeeccC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          488 TDSCKLILCCEDDVDIIESVKTHCKVIKVDP-PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       488 ~~~~~~ILitN~~~~I~~aLrSR~~~I~F~p-pt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      ...++||+||....... .+......+.+.+ ++.++..+.+...+....-. .++....|++.|+|-. -||.++
T Consensus       255 ~~~~~ilvTtR~~~~~~-~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glP-Lal~~~  327 (1249)
T 3sfz_A          255 DNQCQILLTTRDKSVTD-SVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSP-LVVSLI  327 (1249)
T ss_dssp             CSSCEEEEEESSTTTTT-TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCH-HHHHHH
T ss_pred             cCCCEEEEEcCCHHHHH-hhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCH-HHHHHH
Confidence            67788999887653321 1112224567775 89999999888776432222 2356788999998854 344444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.25  E-value=7.5e-06  Score=91.51  Aligned_cols=170  Identities=13%  Similarity=0.080  Sum_probs=99.7

Q ss_pred             cccHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHH---HhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742          361 ICHRHEAQLLKELVVDG---NCPHILIKGQSGSGKRALAMALLHE---IYGDACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g---~~p~ILL~GPPGtGKTtLAraLAke---L~g~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      +|.+..++.|.++|..+   ....+.|+|+.|+||||||+.+++.   -....+ .               .++.++.+.
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~---------------~~~wv~vs~  194 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-D---------------SIVWLKDSG  194 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-S---------------EEEEEECCC
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-C---------------cEEEEEECC
Confidence            49999999999999654   3456789999999999999999972   111111 0               134444433


Q ss_pred             ch--hhHHHHHHHHHHHHHHh--------------------ccCcCCC-CeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742          435 QA--NAKYALMGLVKEIRDNL--------------------AITPEVS-NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC  491 (629)
Q Consensus       435 ~~--~~k~~l~~~lrei~~~~--------------------~~~~~~~-~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~  491 (629)
                      ..  ....++..++..+....                    ...-... ..+||||+++....-   .+...     .++
T Consensus       195 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~~~-----~gs  266 (549)
T 2a5y_B          195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWAQE-----LRL  266 (549)
T ss_dssp             CSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHHHH-----TTC
T ss_pred             CCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---ccccc-----CCC
Confidence            21  22223333333322110                    0000122 459999999985422   22211     578


Q ss_pred             EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCH
Q 036742          492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF-DLSMTFAAKIATKAKQNL  555 (629)
Q Consensus       492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl-~is~e~L~~Ia~~s~GDi  555 (629)
                      .||+||....... ....-...+.+.+++.++..+.+...+..... .-..+....|++.|+|..
T Consensus       267 ~ilvTTR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP  330 (549)
T 2a5y_B          267 RCLVTTRDVEISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP  330 (549)
T ss_dssp             EEEEEESBGGGGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred             EEEEEcCCHHHHH-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence            8888887533211 11111246899999999999988876432211 111346778999998865

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.24  E-value=1.9e-06  Score=112.10  Aligned_cols=143  Identities=15%  Similarity=0.252  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE  448 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre  448 (629)
                      .+..++..+.  ++||+||+|||||.++..++..+.+.                   .++.+|.+...... .+...+..
T Consensus      1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~~~-------------------~~~~infS~~Tta~-~l~~~~e~ 1353 (3245)
T 3vkg_A         1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFPDF-------------------EVVSLNFSSATTPE-LLLKTFDH 1353 (3245)
T ss_dssp             HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCTTE-------------------EEEEECCCTTCCHH-HHHHHHHH
T ss_pred             HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCCCC-------------------ceEEEEeeCCCCHH-HHHHHHhh
Confidence            4556666554  69999999999998876655443221                   14667775443322 22233322


Q ss_pred             HHHHh-----c--cCc--CCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc
Q 036742          449 IRDNL-----A--ITP--EVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV  501 (629)
Q Consensus       449 i~~~~-----~--~~~--~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~  501 (629)
                      .....     .  ..+  .++..||||||++.-..      ...+.|+.++|..   .         .++.||.++|.+.
T Consensus      1354 ~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A         1354 HCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPT 1433 (3245)
T ss_dssp             HEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTT
T ss_pred             cceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCC
Confidence            11100     0  011  13334999999987643      4778888888731   1         3456888888763


Q ss_pred             -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH
Q 036742          502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~  533 (629)
                           .|.+++.+||.++.++.|+.+.+..|...+..
T Consensus      1434 ~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A         1434 DAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp             STTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHH
Confidence                 48999999999999999999999999877654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.08  E-value=1.2e-05  Score=77.12  Aligned_cols=67  Identities=16%  Similarity=0.336  Sum_probs=48.2

Q ss_pred             CeEEEEEccc---hhhHHHHHHHHHHHhccCCCcEEEEEec--CCccchHHHhhc--ceEeeccCCCHHHHHHHHH
Q 036742          461 NAMIVIYEVD---KAAEHIQYLIKWIMDGYTDSCKLILCCE--DDVDIIESVKTH--CKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       461 ~kVIIIDEID---~Ls~~~q~aLlrilEe~~~~~~~ILitN--~~~~I~~aLrSR--~~~I~F~ppt~eei~~iL~  529 (629)
                      ..||||||++   .+.......+..+++.  ....+|++++  ....+...+.+|  +.++.|...+.+++...|.
T Consensus       100 p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~  173 (178)
T 1ye8_A          100 RKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL  173 (178)
T ss_dssp             TCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred             CCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence            4699999964   4456778888888876  3444777774  344567888888  7889988887766655543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.89  E-value=5.3e-06  Score=81.28  Aligned_cols=60  Identities=3%  Similarity=0.011  Sum_probs=40.1

Q ss_pred             CCCeEEEEEccchhh--H-HHHH--HHHHHHhc-cCCCcEEEEEecCCccchHHHhhcce-EeeccC
Q 036742          459 VSNAMIVIYEVDKAA--E-HIQY--LIKWIMDG-YTDSCKLILCCEDDVDIIESVKTHCK-VIKVDP  518 (629)
Q Consensus       459 ~~~kVIIIDEID~Ls--~-~~q~--aLlrilEe-~~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~p  518 (629)
                      +.+.||||||++.+.  . ...+  .++..++. -.....+||+++.+..|+.+|+.|+. .++|.+
T Consensus        86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~  152 (199)
T 2r2a_A           86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIAS  152 (199)
T ss_dssp             GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEE
T ss_pred             cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcC
Confidence            446799999999982  2 1111  12233332 23455799999998889999999985 455554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.82  E-value=0.00036  Score=91.28  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM  443 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~  443 (629)
                      +...-.|-.++..+.  +..+.||+|||||.+++.+|+.+ |..                   ++-+||++..... .+.
T Consensus       591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l-gr~-------------------~~vfnC~~~~d~~-~~g  647 (3245)
T 3vkg_A          591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL-GRF-------------------VLVFCCDEGFDLQ-AMS  647 (3245)
T ss_dssp             HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT-TCC-------------------EEEEECSSCCCHH-HHH
T ss_pred             HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh-CCe-------------------EEEEeCCCCCCHH-HHH
Confidence            334455666666543  45789999999999999999996 554                   5677887554432 334


Q ss_pred             HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh-----------------c----cCCCcEEEEEecC---
Q 036742          444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD-----------------G----YTDSCKLILCCED---  499 (629)
Q Consensus       444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE-----------------e----~~~~~~~ILitN~---  499 (629)
                      .++..+.+.        +...++||++++..++..++...+.                 .    ....+.|++|.|.   
T Consensus       648 ~i~~G~~~~--------GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~  719 (3245)
T 3vkg_A          648 RIFVGLCQC--------GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA  719 (3245)
T ss_dssp             HHHHHHHHH--------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred             HHHhhHhhc--------CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence            444443321        3478999999998776665444322                 0    1134567777774   


Q ss_pred             -CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742          500 -DVDIIESVKTHCKVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       500 -~~~I~~aLrSR~~~I~F~ppt~eei~~iL~  529 (629)
                       ...+.+.|+.||..+.+..|+.+.+.+++.
T Consensus       720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L  750 (3245)
T 3vkg_A          720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVML  750 (3245)
T ss_dssp             GCCCSCHHHHTTEEEEECCSCCHHHHHHHHH
T ss_pred             CcccChHHHHhhcEEEEEeCCCHHHHHHHHH
Confidence             456899999999999999999998888864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.76  E-value=1.1e-05  Score=77.80  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc------cchHHHhhcce
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV------DIIESVKTHCK  512 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~------~I~~aLrSR~~  512 (629)
                      ..+|||||++.+.++....|..+.+.   +..+|++....+      ...+.|.+++.
T Consensus        77 ~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad  131 (184)
T 2orw_A           77 TRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD  131 (184)
T ss_dssp             EEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence            45999999999977788888878774   677887765332      34566777763

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.73  E-value=0.00034  Score=83.54  Aligned_cols=41  Identities=22%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             cccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742          361 ICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +|.+..++.|.++|.. ...+.+.|+||.|+||||||+.++.
T Consensus       131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence            8999999999999975 4456788999999999999999985

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.59  E-value=0.00012  Score=77.05  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+||||||||++|..+|..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            4789999999999999999987

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.41  E-value=0.00063  Score=76.71  Aligned_cols=114  Identities=13%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL  442 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l  442 (629)
                      .+...+.+..++.   .+.++|.||||||||+++.+++..+.....                 .++.. +....... .+
T Consensus       191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-----------------~Vl~~-ApT~~Aa~-~L  248 (574)
T 3e1s_A          191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGL-----------------EVGLC-APTGKAAR-RL  248 (574)
T ss_dssp             CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTC-----------------CEEEE-ESSHHHHH-HH
T ss_pred             CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------------eEEEe-cCcHHHHH-Hh
Confidence            4555555555553   357899999999999999999987743321                 13322 22222111 11


Q ss_pred             HHHHH----HHHHHhccC---------cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          443 MGLVK----EIRDNLAIT---------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       443 ~~~lr----ei~~~~~~~---------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+.+.    .+...+...         ......+|||||+..+.......|.+.+   .....+|++.....
T Consensus       249 ~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q  317 (574)
T 3e1s_A          249 GEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ  317 (574)
T ss_dssp             HHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred             HhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence            11000    001111100         1112349999999999877666655443   36778888876543

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.26  E-value=0.0018  Score=64.43  Aligned_cols=38  Identities=32%  Similarity=0.399  Sum_probs=28.7

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+...+.+..++..+   .+|++||+|+|||.+|.+++..+
T Consensus        95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence            445555566665542   59999999999999999988775

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.19  E-value=0.0014  Score=65.20  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=27.4

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ..+|+|||+..+..+....+..+.+.   +..+|++..
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl  124 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL  124 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence            45999999999987777777665552   688888876

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.15  E-value=0.0019  Score=73.29  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.++++||||||||+++..++..+.
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999998887764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.11  E-value=0.00058  Score=86.25  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||||||+||.+++.+..
T Consensus      1429 ~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A         1429 IVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999998864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.11  E-value=0.00027  Score=88.13  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +|||||||||||++|++++.+.
T Consensus      1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHh
Confidence            8999999999999999999875

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=96.98  E-value=0.032  Score=53.66  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=27.6

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~~  502 (629)
                      .+|||||+|.+..  +....+..++.......++|+.+..+..
T Consensus       160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~  202 (220)
T 1t6n_A          160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK  202 (220)
T ss_dssp             CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred             CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence            4999999999853  4455566666655566777666554443

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.97  E-value=0.0018  Score=64.64  Aligned_cols=69  Identities=9%  Similarity=0.009  Sum_probs=41.6

Q ss_pred             CeEEEEEccchhh-HHH--HHHHHHHHhccCCCcEEEEEecCC------------------ccchHHHhhcceEeeccCC
Q 036742          461 NAMIVIYEVDKAA-EHI--QYLIKWIMDGYTDSCKLILCCEDD------------------VDIIESVKTHCKVIKVDPP  519 (629)
Q Consensus       461 ~kVIIIDEID~Ls-~~~--q~aLlrilEe~~~~~~~ILitN~~------------------~~I~~aLrSR~~~I~F~pp  519 (629)
                      +.+|||||+-... .+.  ...+..+.+.+...+.++.++|-.                  +.+.+.+..++..|.+-.+
T Consensus        85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~  164 (228)
T 2r8r_A           85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDL  164 (228)
T ss_dssp             CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCC
T ss_pred             CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecC
Confidence            3599999987641 110  001111122334667888888732                  2245666677777888888


Q ss_pred             CHHHHHHHHH
Q 036742          520 VTHEIMEVLI  529 (629)
Q Consensus       520 t~eei~~iL~  529 (629)
                      +++++.++|.
T Consensus       165 ~p~~l~~rl~  174 (228)
T 2r8r_A          165 PPRELLERLR  174 (228)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8888877754

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.85  E-value=0.0019  Score=63.12  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHHHhccCc-
Q 036742          381 HILIKGQSGSGKR-ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITP-  457 (629)
Q Consensus       381 ~ILL~GPPGtGKT-tLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~~~-  457 (629)
                      -.++|||.|+||| +|.+++.+......                  .++.+.+. +.+.... +..-++.......... 
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~------------------kvl~~kp~~D~R~~~~-i~S~~g~~~~A~~~~~~   82 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIAQY------------------KCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLL   82 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CEEEEEETTCCCGGGS-CCHHHHHHSEEEEESSG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHcCC------------------eEEEEccccCccchhh-hhhccCCcccceecCCH
Confidence            4679999999999 78888887754321                  14555442 2221111 1111110000000000 


Q ss_pred             ------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          458 ------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       458 ------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                            .....||+|||++-+ ++..+.+..+.+   .+.+||++.
T Consensus        83 ~d~~~~~~~~DvIlIDEaQFf-k~~ve~~~~L~~---~gk~VI~~G  124 (195)
T 1w4r_A           83 RDVAQEALGVAVIGIDEGQFF-PDIVEFCEAMAN---AGKTVIVAA  124 (195)
T ss_dssp             GGGHHHHHTCSEEEESSGGGC-TTHHHHHHHHHH---TTCEEEEEE
T ss_pred             HHHHHhccCCCEEEEEchhhh-HHHHHHHHHHHH---CCCeEEEEe
Confidence                  001239999999999 666666655554   466788775

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.85  E-value=0.0051  Score=60.06  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      ..|++|+++|.||||+|-.+|-...+.+
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G   56 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHG   56 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            4689999999999999999998876554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.85  E-value=0.0056  Score=55.83  Aligned_cols=22  Identities=50%  Similarity=0.638  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.| ..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            5789999999999999999 553

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.83  E-value=0.005  Score=59.32  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||++++++..+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.82  E-value=0.0062  Score=58.32  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|+||+|+|||+++..+|.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.81  E-value=0.0086  Score=60.07  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||+|+.||+.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            47899999999999999999987

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=96.80  E-value=0.03  Score=57.85  Aligned_cols=40  Identities=13%  Similarity=0.102  Sum_probs=26.8

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+..  .....+..++........+|+.+..+.
T Consensus       147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  188 (395)
T 3pey_A          147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA  188 (395)
T ss_dssp             CEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             CEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence            4999999999865  344455556665566677777665543

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.79  E-value=0.025  Score=53.57  Aligned_cols=40  Identities=13%  Similarity=0.113  Sum_probs=25.9

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+... ....+..++........+|+.+....
T Consensus       146 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~  186 (207)
T 2gxq_A          146 EVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP  186 (207)
T ss_dssp             SEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred             eEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence            49999999988542 33445556665555666666655443

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.75  E-value=0.028  Score=53.29  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+.. +....+..++........+|+.+...
T Consensus       148 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~  187 (206)
T 1vec_A          148 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF  187 (206)
T ss_dssp             CEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred             CEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence            4999999998743 33445555665555566666655443

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.75  E-value=0.015  Score=55.98  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.74  E-value=0.0011  Score=71.03  Aligned_cols=25  Identities=48%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .++|+||+|+||||++++++..+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCC
Confidence            6889999999999999999998633

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=96.72  E-value=0.048  Score=55.93  Aligned_cols=40  Identities=18%  Similarity=0.130  Sum_probs=27.9

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ++|||||+|.|..  +....+..++......+.+|+.+-...
T Consensus       237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~  278 (300)
T 3fmo_B          237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE  278 (300)
T ss_dssp             SEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred             eEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            4999999999864  455566666666666777776654443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.72  E-value=0.0098  Score=63.08  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.+++++...+    .|+.++... ...++|.||+|+||||++++++..+.
T Consensus       103 ~~~l~~lg~~~----~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          103 VLTMEELGMGE----VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CCCTTTTTCCH----HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHcCChH----HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            45677776544    344444322 22689999999999999999999874

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.72  E-value=0.022  Score=55.94  Aligned_cols=21  Identities=24%  Similarity=0.543  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+++.||+|||||+++..++-
T Consensus        78 ~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHHHh
Confidence            699999999999987766553

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.70  E-value=0.022  Score=54.78  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999885

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.68  E-value=0.015  Score=58.30  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ...|+|.|+||+||||+|+.|+..+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999999863

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.64  E-value=0.013  Score=57.18  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |+|.||||+||+|.|+.||+.+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999986

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.62  E-value=0.02  Score=64.39  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             eEEEEEccchhh----HHHHHHHHHHHhcc-CCCcEEEEEecCCc--cchHHHhhcc-eEeeccCCCHHHHHHHHH
Q 036742          462 AMIVIYEVDKAA----EHIQYLIKWIMDGY-TDSCKLILCCEDDV--DIIESVKTHC-KVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       462 kVIIIDEID~Ls----~~~q~aLlrilEe~-~~~~~~ILitN~~~--~I~~aLrSR~-~~I~F~ppt~eei~~iL~  529 (629)
                      -||||||++.+.    ......|.++.... ..++.+|++|..+.  .|...|++-| ..|-|.-.+..+...+|-
T Consensus       345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd  420 (574)
T 2iut_A          345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD  420 (574)
T ss_dssp             EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred             EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence            399999999874    34556677776654 35667888998887  5788888887 457787778888777763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.61  E-value=0.00059  Score=71.68  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+|||++|+.||+.+
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68899999999999999999986

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.59  E-value=0.0056  Score=59.58  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||+|+|||++++.++..+
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999863

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.59  E-value=0.0013  Score=61.79  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|+|.||+||||||+|+.||+.+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999987

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.56  E-value=0.0015  Score=69.51  Aligned_cols=39  Identities=31%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++..|...+..|..++++|.||+|+||||++++||+.+.
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            334444445577778899999999999999999999874

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.56  E-value=0.018  Score=64.07  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             EEEEEccchhhH----HHHHHHHHHHhccC-CCcEEEEEecCCc--cchHHHhhcc-eEeeccCCCHHHHHHHHHH
Q 036742          463 MIVIYEVDKAAE----HIQYLIKWIMDGYT-DSCKLILCCEDDV--DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ  530 (629)
Q Consensus       463 VIIIDEID~Ls~----~~q~aLlrilEe~~-~~~~~ILitN~~~--~I~~aLrSR~-~~I~F~ppt~eei~~iL~~  530 (629)
                      ||||||+..+..    .....|.++..... ..+.+|++|.++.  .+...+++-| ..|-|.--+..+...+|..
T Consensus       300 vlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~  375 (512)
T 2ius_A          300 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ  375 (512)
T ss_dssp             EEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred             EEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence            899999977643    34455555555443 3678899999887  3677788776 4677777788887776643

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.54  E-value=0.029  Score=54.00  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+... ....+..++........+|+.+...
T Consensus       157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~  196 (224)
T 1qde_A          157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM  196 (224)
T ss_dssp             CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred             cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence            49999999998542 3344556665555666666655443

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.50  E-value=0.0092  Score=62.46  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.||+|+|||+||..||+.+
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            357899999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.48  E-value=0.0013  Score=61.36  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|+|+||+||||+|++|++.+
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58899999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.47  E-value=0.0017  Score=59.84  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||+|+||||+++.|++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999986

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=96.41  E-value=0.051  Score=52.28  Aligned_cols=39  Identities=10%  Similarity=0.121  Sum_probs=25.1

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+... ....+..++........+++.+...
T Consensus       152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~  191 (219)
T 1q0u_A          152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI  191 (219)
T ss_dssp             CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred             eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence            48999999998542 3345556666655566665554433

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.41  E-value=0.021  Score=54.52  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          377 GNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       377 g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...+.|+|.|++|+|||+|+.+++...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998764

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.40  E-value=0.0063  Score=60.22  Aligned_cols=97  Identities=13%  Similarity=0.038  Sum_probs=51.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHH---------
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRD---------  451 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~---------  451 (629)
                      .+++||.|+||||.+..++..+.+...                 .++-+.+. +.+.....+...+.....         
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~~~~g~-----------------kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~   93 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRTQFAKQ-----------------HAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKD   93 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTC-----------------CEEEEECC-----------------CCEEECSSGGG
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCC-----------------EEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHH
Confidence            568999999999999888887644332                 13333332 111111011111110000         


Q ss_pred             HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       452 ~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+... .....+|+|||+..+..+..+.|..+.+   .+.+||++.-+
T Consensus        94 ~~~~~-~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~  137 (214)
T 2j9r_A           94 IFKHI-TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD  137 (214)
T ss_dssp             GGGGC-CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred             HHHHH-hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence            00000 0123599999999998777776666554   36788888753

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=96.38  E-value=0.06  Score=52.37  Aligned_cols=40  Identities=13%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+... ....+..++........+|+.+....
T Consensus       173 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~  213 (236)
T 2pl3_A          173 QMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT  213 (236)
T ss_dssp             CEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred             cEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence            49999999988542 34556666666666666666554433

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.36  E-value=0.0022  Score=61.46  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...|+|.||+||||||++++||+.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3479999999999999999999987

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.31  E-value=0.0025  Score=59.77  Aligned_cols=24  Identities=38%  Similarity=0.661  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|+|+||+||||++++|+..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            469999999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.29  E-value=0.0023  Score=59.76  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.||||+||||+|++||+.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999986

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=96.28  E-value=0.065  Score=52.12  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             eEEEEEccchhhHH--HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH--IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~--~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+...  ....+..++........+|+.+...
T Consensus       168 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~  208 (230)
T 2oxc_A          168 RLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY  208 (230)
T ss_dssp             CEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred             CEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence            48999999998432  3444555555555566665554433

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.28  E-value=0.046  Score=53.56  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+... ....+..++........+|+.+...
T Consensus       175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~  214 (237)
T 3bor_A          175 KMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM  214 (237)
T ss_dssp             CEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred             cEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence            49999999988542 2344555555555666766655443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.26  E-value=0.0021  Score=59.56  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++++||..+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999985

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.26  E-value=0.054  Score=54.50  Aligned_cols=39  Identities=13%  Similarity=0.138  Sum_probs=28.6

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..+...+.+..++..   ...|+.+|+|+|||.++.+++..+
T Consensus       114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~  152 (282)
T 1rif_A          114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence            345555566666665   346889999999999998877764

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=96.23  E-value=0.086  Score=54.92  Aligned_cols=40  Identities=18%  Similarity=0.130  Sum_probs=25.5

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+..  .....+..++........+|+.+-.+.
T Consensus       170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  211 (412)
T 3fht_A          170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE  211 (412)
T ss_dssp             CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence            4999999998843  334444555555556677776655443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.20  E-value=0.0026  Score=59.53  Aligned_cols=24  Identities=13%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||||+||||+++.|+..+.
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.19  E-value=0.0025  Score=59.70  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .|+|.|+||+||||+++.|++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5889999999999999999999753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.17  E-value=0.0032  Score=60.37  Aligned_cols=26  Identities=35%  Similarity=0.577  Sum_probs=22.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ....++|.||+|+||||++++|+..+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            33468899999999999999999986

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=96.16  E-value=0.031  Score=52.98  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +...+.+..++..   .++++.+|+|+|||.++..++..+
T Consensus        36 ~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           36 PYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             HHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            4444445555542   469999999999999998887754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.15  E-value=0.024  Score=59.15  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+|||+||..+|+.+
T Consensus        12 ~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCccCHHHHHHHHHHhC
Confidence            57799999999999999999986

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.15  E-value=0.014  Score=61.91  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||+|||++|..+|..+.
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998763

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.15  E-value=0.0051  Score=59.62  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+|+|||++.+.++....+..+.+   .+.++|++.-+
T Consensus        83 dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~  117 (191)
T 1xx6_A           83 EVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLD  117 (191)
T ss_dssp             SEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecc
Confidence            599999999998777777766655   36788888653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.14  E-value=0.061  Score=54.62  Aligned_cols=23  Identities=39%  Similarity=0.624  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|+..+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999876

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.13  E-value=0.021  Score=60.83  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||+|||++|..+|..+.
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~   99 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQ   99 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHH
Confidence            588999999999999999998763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.11  E-value=0.0028  Score=58.76  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.||||+||||+|+.|++.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~~   25 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIAK   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            4789999999999999999983

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=96.11  E-value=0.038  Score=55.30  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+|||||+|.+... ....+..++......+.+|+.+-.
T Consensus       203 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT  241 (262)
T 3ly5_A          203 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT  241 (262)
T ss_dssp             CEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSS
T ss_pred             CEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEec
Confidence            49999999998553 344455666655566666655443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.08  E-value=0.0086  Score=63.27  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||+|||++|..++..+.
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999997753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.08  E-value=0.003  Score=59.39  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+++.++..+
T Consensus         7 ~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999999986

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.07  E-value=0.086  Score=53.82  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+..++..+  .++++.+|+|+|||.++...+..+
T Consensus        36 ~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~   68 (367)
T 1hv8_A           36 VIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL   68 (367)
T ss_dssp             HHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence            344444432  479999999999999887766554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.06  E-value=0.0035  Score=58.88  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.|+||+||||+|+.|++.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999999986

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.06  E-value=0.0037  Score=57.87  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.+|+|.|++||||||+++.||+.+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999987

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.03  E-value=0.075  Score=52.68  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=25.0

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+.. +....+..++........+|+.+...
T Consensus       188 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~  227 (249)
T 3ber_A          188 KYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM  227 (249)
T ss_dssp             CEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred             CEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence            4899999998854 33444566666555566666555443

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.99  E-value=0.025  Score=63.15  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |..++..+.+.+..+. ..+|+++|+|+|||.++-.++..+.
T Consensus       183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~  223 (590)
T 3h1t_A          183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW  223 (590)
T ss_dssp             HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence            4445555555555543 5689999999999999988887764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.98  E-value=0.0039  Score=58.45  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+++.|++.+
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999986

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=95.98  E-value=0.094  Score=56.66  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=27.8

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~~  502 (629)
                      .+|||||+|.+..  .....+..++......+++|+.+-.+..
T Consensus       237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~  279 (479)
T 3fmp_B          237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  279 (479)
T ss_dssp             CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred             CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence            4999999998853  4445555666655667777776655443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.98  E-value=0.021  Score=60.65  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             HHHHHHHcCCCC---eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          369 LLKELVVDGNCP---HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       369 ~Lk~~L~~g~~p---~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|-.+|-.|.++   .++|+||||+|||||+..++..+.
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455555423333   478999999999999999998863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.97  E-value=0.0039  Score=59.64  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|++|+||||+|+.|++.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999986

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.96  E-value=0.0045  Score=57.20  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|++|+||||+|+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999999986

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.93  E-value=0.0047  Score=58.19  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+++.|++.+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999986

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.91  E-value=0.0049  Score=59.81  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.||..+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999986

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.90  E-value=0.018  Score=65.51  Aligned_cols=42  Identities=12%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -.++...+.+..++...  +..||+||||||||+++-.+..++.
T Consensus       189 ~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~  230 (646)
T 4b3f_X          189 CLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAV  230 (646)
T ss_dssp             TCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHH
Confidence            34777888888888753  3589999999999987666666554

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.89  E-value=0.15  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++++.+|+|+|||.++...+-..
T Consensus        60 ~~li~a~TGsGKT~~~~~~~~~~   82 (400)
T 1s2m_A           60 DILARAKNGTGKTAAFVIPTLEK   82 (400)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHHHHH
Confidence            59999999999999776655543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.88  E-value=0.0065  Score=58.21  Aligned_cols=25  Identities=48%  Similarity=0.618  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..+.|.||+||||||++++|+..+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.87  E-value=0.072  Score=55.66  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+...+.-.+..|.  .++|.||+|+||||++++++..+
T Consensus       159 ~~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          159 QAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             HHHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            45566666666665  58999999999999999999875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.87  E-value=0.0046  Score=57.93  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|+..+
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.87  E-value=0.022  Score=59.70  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||||+|||++|..+|..+
T Consensus       124 i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.87  E-value=0.0045  Score=59.12  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|++.+
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999986

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.85  E-value=0.0046  Score=58.82  Aligned_cols=24  Identities=38%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|+||+||||+|+.|++.+.
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999873

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.83  E-value=0.0056  Score=57.95  Aligned_cols=26  Identities=38%  Similarity=0.641  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ..|+|+|++||||||+++.|+..+.+
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g   36 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDG   36 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            46899999999999999999998434

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.81  E-value=0.0054  Score=59.63  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.||||+||||+++.||+.+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.81  E-value=0.0073  Score=61.90  Aligned_cols=23  Identities=43%  Similarity=0.692  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||||+||||+|+.++..+
T Consensus        35 livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           35 AFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999985

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.79  E-value=0.0047  Score=58.28  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.|++.+
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999986

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.79  E-value=0.066  Score=54.15  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|+..+
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999999863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.75  E-value=0.027  Score=71.40  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||||||++|.+++.+..
T Consensus      1083 ~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A         1083 IVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            699999999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.75  E-value=0.0054  Score=57.94  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+||||+++.|++.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            47899999999999999999987

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.74  E-value=0.0039  Score=58.71  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.||+|+||||++++|+..
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5789999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.74  E-value=0.0056  Score=56.92  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++++|+..+
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhh
Confidence            57899999999999999999886

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.73  E-value=0.037  Score=54.19  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..|+|.|++|+|||+|+.+|+..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            36999999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.73  E-value=0.0053  Score=57.39  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|+..+
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.72  E-value=0.017  Score=62.37  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|+|+||+||||+|+.++..+
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            358899999999999999999875

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.72  E-value=0.2  Score=49.01  Aligned_cols=38  Identities=16%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+|||||+|.+... ....+..++........+++.+..
T Consensus       178 ~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT  216 (242)
T 3fe2_A          178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT  216 (242)
T ss_dssp             CEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred             cEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence            49999999998653 345556666666666666665443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.70  E-value=0.007  Score=59.49  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.||+.+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999986

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.68  E-value=0.077  Score=57.74  Aligned_cols=24  Identities=33%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++..+|..+.
T Consensus        99 vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           99 IIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999998874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.68  E-value=0.011  Score=58.76  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.||||+||||+|+.|++.+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999886

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.67  E-value=0.0085  Score=59.86  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||||+||||+|+.|+..+
T Consensus        34 ~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           34 AILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEEESCGGGTTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58899999999999999999986

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.66  E-value=0.0036  Score=58.42  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=17.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.|++.+
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            368899999999999999999986

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.64  E-value=0.16  Score=52.64  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=25.8

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+..  .....+..++........+|+.+..+
T Consensus       154 ~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~  194 (391)
T 1xti_A          154 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL  194 (391)
T ss_dssp             SEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSC
T ss_pred             CEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeC
Confidence            4899999999854  44455666666555566666655443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.63  E-value=0.0066  Score=55.85  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+||||+|+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.61  E-value=0.0051  Score=60.07  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.|++.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999985

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.57  E-value=0.022  Score=54.29  Aligned_cols=41  Identities=15%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      +++...+.+..+......-.|+|.|++|+|||+|+..+...
T Consensus        13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34444555555554444447999999999999999988864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.57  E-value=0.0065  Score=58.04  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.|++.+.
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.55  E-value=0.047  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.53  E-value=0.007  Score=57.68  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+||||+++.|++.+
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999885

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.52  E-value=0.0076  Score=56.46  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999873

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.52  E-value=0.007  Score=58.83  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|+||+||||+|+.||..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999987

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.49  E-value=0.0064  Score=58.44  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||+++.|+..+
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999999986

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.48  E-value=0.074  Score=49.66  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+|||+|+..+...-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.48  E-value=0.1  Score=56.96  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .|+|.|++|+||||++..+|..+..
T Consensus       102 vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A          102 ILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECcCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.45  E-value=0.0077  Score=58.22  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+||+||||+|+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.45  E-value=0.0074  Score=56.94  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++++|+..+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            36799999999999999999754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.44  E-value=0.0085  Score=59.26  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.||||+||+|.|+.|++.+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999986

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.44  E-value=0.061  Score=56.41  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             HHHHHH----cCCCC-eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVV----DGNCP-HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~----~g~~p-~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |-.+|-    .|-.+ .++|+||||+|||+|+..++..+.
T Consensus        14 LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           14 MNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             HHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            445555    34333 367999999999999988877653

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=95.43  E-value=0.23  Score=47.86  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+|||||+|.+... ....+..++........+++.+-.
T Consensus       169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT  207 (228)
T 3iuy_A          169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT  207 (228)
T ss_dssp             CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred             eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence            49999999998543 234455556555566666665544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.43  E-value=0.01  Score=57.27  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||+|+|||||+++|+..+.
T Consensus        24 ~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           24 LVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            567999999999999999999874

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.42  E-value=0.026  Score=55.31  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|.+|+|||+|+..+...
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            3899999999999999988753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.42  E-value=0.0078  Score=57.49  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.|++.+.
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.41  E-value=0.0083  Score=58.00  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.||+||||||+++.|++.+
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.40  E-value=0.071  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.39  E-value=0.0087  Score=56.35  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.++..+.
T Consensus        15 ~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           15 VVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.39  E-value=0.01  Score=57.05  Aligned_cols=45  Identities=22%  Similarity=0.233  Sum_probs=36.9

Q ss_pred             cccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          359 GFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-.+.+..+.+...+.....+.++|.|++|+||||++..++..+
T Consensus        10 ~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           10 LLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344566777778887776677889999999999999999999886

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.38  E-value=0.073  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.35  E-value=0.0087  Score=59.22  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..++|.||+|+||||++++|++.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999886

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.11  Score=49.60  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.34  E-value=0.0091  Score=58.42  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.31  E-value=0.035  Score=50.01  Aligned_cols=22  Identities=14%  Similarity=0.533  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.29  E-value=0.02  Score=61.98  Aligned_cols=49  Identities=27%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+++++.........|..++. .....++|.||.|+||||++++++..+.
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            345666555555666777653 2333588999999999999999999874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.27  E-value=0.0096  Score=56.17  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||++++|+..+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.26  E-value=0.023  Score=54.51  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCC---CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          365 HEAQLLKELVVDGNC---PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       365 ~~~~~Lk~~L~~g~~---p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.++.|.+.+.....   ..+.|.||+|+||||+++.|+..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344555555553221   247799999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.25  E-value=0.14  Score=47.22  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      +.|+|.|++|+|||+|+..+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.24  E-value=0.05  Score=50.15  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.20  E-value=0.062  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.20  E-value=0.01  Score=56.28  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||++++|+..+
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47799999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.19  E-value=0.057  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.18  E-value=0.19  Score=46.51  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|++.++..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.16  E-value=0.0082  Score=56.94  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+||||+++.|++.+
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.14  E-value=0.011  Score=56.22  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||+++.|+..+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            57899999999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.14  E-value=0.095  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998864

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=95.08  E-value=0.29  Score=53.13  Aligned_cols=38  Identities=13%  Similarity=0.169  Sum_probs=28.1

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+...+.+..++..   ..+|++||+|+|||.++..++..+
T Consensus       115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~  152 (510)
T 2oca_A          115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY  152 (510)
T ss_dssp             CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence            34455555556554   468999999999999998777664

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.08  E-value=0.021  Score=55.09  Aligned_cols=25  Identities=40%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..|+|.|++|+||||+++.|+..+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999999999874

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=95.08  E-value=0.19  Score=52.65  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+.. +....+..++........+|+.+-.+
T Consensus       181 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~  220 (410)
T 2j0s_A          181 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL  220 (410)
T ss_dssp             CEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred             eEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence            4999999998743 33455566666555666666655443

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.07  E-value=0.029  Score=61.24  Aligned_cols=35  Identities=6%  Similarity=-0.215  Sum_probs=26.6

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      ..+|||||+-.+..+...++..++.    ...+|+....
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~  269 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDT  269 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECT
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCc
Confidence            4599999999998888877766543    2677877654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.05  E-value=0.028  Score=51.28  Aligned_cols=21  Identities=38%  Similarity=0.659  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|+.++..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999998864

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=95.04  E-value=0.2  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++|+.+|+|+|||..+-+++..+
T Consensus        25 ~~ll~~~tG~GKT~~~~~~~~~~   47 (494)
T 1wp9_A           25 NCLIVLPTGLGKTLIAMMIAEYR   47 (494)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            79999999999999998887765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.01  E-value=0.063  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.670  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.99  E-value=0.023  Score=54.69  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=34.6

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +++..+.++..+.....+.++|.|++|+||||++..++..++
T Consensus        22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            355667777777766677899999999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.99  E-value=0.23  Score=47.39  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=94.97  E-value=0.51  Score=45.94  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=16.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLA  400 (629)
                      ++++.+|+|+|||..+...+
T Consensus        68 ~~l~~a~TGsGKT~~~~l~~   87 (245)
T 3dkp_A           68 ELLASAPTGSGKTLAFSIPI   87 (245)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEECCCCCcHHHHHHHHH
Confidence            59999999999998754433

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.97  E-value=0.16  Score=48.66  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5999999999999999998864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.96  E-value=0.012  Score=56.79  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||++++|+..+
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.96  E-value=0.014  Score=54.51  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.|++|+||||++++++..+
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999986

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.95  E-value=0.063  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.93  E-value=0.075  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.93  E-value=0.057  Score=59.82  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHH--HHHH
Q 036742          381 HILIKGQSGSGKRALAMAL--LHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraL--AkeL  403 (629)
                      .++|.||+|+|||||++++  +..+
T Consensus        41 ~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999994  4544

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=94.91  E-value=0.28  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++++.+|+|+|||.++...+.+.
T Consensus        33 ~~lv~~~TGsGKT~~~~~~~~~~   55 (337)
T 2z0m_A           33 NVVVRAKTGSGKTAAYAIPILEL   55 (337)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcHHHHHHHHHHhh
Confidence            69999999999999877666553

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.90  E-value=0.23  Score=57.76  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=23.6

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+..++..+.  .+++.||+|+|||+++..++..
T Consensus       101 ~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          101 EFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             HHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence            4455555543  6999999999999977776544

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=94.90  E-value=0.17  Score=52.32  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=25.8

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .+|||||+|.+... ....+..++........+|+.+..+.
T Consensus       164 ~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  204 (394)
T 1fuu_A          164 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP  204 (394)
T ss_dssp             CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred             cEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence            49999999998542 33445555555556677776655543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.89  E-value=0.057  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.88  E-value=0.1  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            5899999999999999988753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.87  E-value=0.14  Score=45.77  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.86  E-value=0.055  Score=48.63  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=94.85  E-value=0.037  Score=54.81  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      .+|+|||++-+..+....+..+.+   .+.+||+..
T Consensus       103 dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G  135 (219)
T 3e2i_A          103 DVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG  135 (219)
T ss_dssp             SEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred             CEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence            499999999999888888888774   467777765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.85  E-value=0.18  Score=46.72  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ...++|.|++|+|||+|+..+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.82  E-value=0.016  Score=55.58  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+||||+++.++..+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.82  E-value=0.0089  Score=57.14  Aligned_cols=24  Identities=38%  Similarity=0.499  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|.|.|++|+||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.81  E-value=0.054  Score=48.96  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|+..++.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.81  E-value=0.098  Score=48.95  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=4.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998865

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.80  E-value=0.057  Score=54.02  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=24.4

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      .+|+|||+..+..  ...+.+++..  .+..||++.-+
T Consensus        92 dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~  125 (234)
T 2orv_A           92 AVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD  125 (234)
T ss_dssp             SEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred             CEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence            4999999999974  4444555554  56788888755

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.76  E-value=0.55  Score=41.66  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999988864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.76  E-value=0.15  Score=46.49  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998764

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=94.74  E-value=0.27  Score=51.22  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      .+|||||+|.+... ....+..++........+|+.+-.+
T Consensus       185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~  224 (414)
T 3eiq_A          185 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM  224 (414)
T ss_dssp             CEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCC
T ss_pred             cEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence            49999999998543 3455666666666677777766554

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.73  E-value=0.014  Score=55.49  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|.|.|++|+||||+++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            478999999999999999998

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.73  E-value=0.045  Score=49.24  Aligned_cols=22  Identities=14%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.72  E-value=0.13  Score=47.73  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.71  E-value=0.02  Score=54.36  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.|++|+||||+++.|++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.66  E-value=0.13  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.63  E-value=0.019  Score=55.19  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|++.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.57  E-value=0.02  Score=57.23  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||+++.|++.+
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.57  E-value=0.02  Score=55.23  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|+||+|+|||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999998874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.56  E-value=0.016  Score=55.46  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+.|.||+|+||||+++.|+.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999987

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=94.55  E-value=0.18  Score=57.63  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=17.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLA  400 (629)
                      .+++++||+|+|||+.+-..+
T Consensus        47 ~~~lv~apTGsGKT~~~~l~i   67 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEMGI   67 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEcCCCCcHHHHHHHHH
Confidence            479999999999999985444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.53  E-value=0.041  Score=56.53  Aligned_cols=24  Identities=25%  Similarity=0.539  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|.|.||+|+||||+|+.|+..+.
T Consensus        33 ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           33 FIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            467999999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.52  E-value=0.098  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.52  E-value=0.1  Score=47.80  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.46  E-value=0.02  Score=54.74  Aligned_cols=23  Identities=43%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+||||+++.|+..+
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999986

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=94.46  E-value=0.16  Score=54.69  Aligned_cols=39  Identities=31%  Similarity=0.376  Sum_probs=29.7

Q ss_pred             ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -.+...+.+..++..+   .+|++||+|+|||.++.+++..+
T Consensus        94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~  132 (472)
T 2fwr_A           94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL  132 (472)
T ss_dssp             BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence            3455556666666543   59999999999999998888775

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.26  Score=59.70  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..+|++||.|+|||.++...+...
T Consensus       200 ~dvLV~ApTGSGKTlva~l~i~~~  223 (1108)
T 3l9o_A          200 ESVLVSAHTSAGKTVVAEYAIAQS  223 (1108)
T ss_dssp             CCEEEECCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHHHHH
Confidence            369999999999999876655443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.43  E-value=0.076  Score=49.69  Aligned_cols=22  Identities=18%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.42  E-value=0.32  Score=50.11  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=26.1

Q ss_pred             HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|-.++ .|-.+  -++|.|+||+|||++|..+|..+.
T Consensus        57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344445 34333  488999999999999999997753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.40  E-value=0.05  Score=49.48  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.39  E-value=0.079  Score=49.98  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998854

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.39  E-value=0.14  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.38  E-value=0.024  Score=57.18  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|+|.|++|+||||++++||+.+ +.
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~~l-g~   74 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMARSL-GY   74 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH-TC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc-CC
Confidence            69999999999999999999987 44

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.36  E-value=0.021  Score=55.04  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|+..+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47799999999999999999975

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.34  E-value=0.19  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.33  E-value=0.056  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998854

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.33  E-value=0.059  Score=49.58  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=9.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.33  E-value=0.072  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.32  E-value=0.25  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999998853

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.31  E-value=0.078  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.30  E-value=0.11  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.29  E-value=0.086  Score=49.96  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            5899999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.28  E-value=0.11  Score=49.10  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.27  E-value=0.024  Score=53.52  Aligned_cols=22  Identities=41%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|.|.|++|+||||+++.|++.
T Consensus        10 ~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            5789999999999999999986

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.26  E-value=0.091  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6999999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.26  E-value=0.11  Score=49.53  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+.|+|.|++|+|||+|+.++...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457999999999999999988754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.25  E-value=0.15  Score=55.11  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.||+|+|||||+++|+...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.19  E-value=0.13  Score=45.68  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|++.|++|+|||+++..++..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.18  E-value=0.027  Score=55.70  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||+|+||||+++.|+..+.
T Consensus        28 ~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           28 FITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999974

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.15  E-value=0.031  Score=52.32  Aligned_cols=18  Identities=39%  Similarity=0.635  Sum_probs=16.3

Q ss_pred             eEEEEcCCCCcHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMA  398 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAra  398 (629)
                      .+.|.||+|+||||++++
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            477999999999999994

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.14  E-value=0.025  Score=56.28  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.|++|+||||+|+.|+..+
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.14  E-value=0.035  Score=56.11  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||.|+||||++++++..+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhCC
Confidence            588999999999999999999763

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.14  E-value=0.075  Score=49.60  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999998864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.13  E-value=0.027  Score=54.91  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+|||||+++|++.+
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.11  E-value=0.024  Score=55.30  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|+..+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.10  E-value=0.025  Score=56.48  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.||+|+||||++++||+.|
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999886

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.09  E-value=0.1  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.08  E-value=0.062  Score=50.09  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.05  E-value=0.13  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.99  E-value=0.029  Score=52.43  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47799999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.97  E-value=0.032  Score=53.66  Aligned_cols=66  Identities=15%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             CCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEE--Ee--cCCc-cchHHHhhc--ceEeeccCCCHHHHHHHH
Q 036742          460 SNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLIL--CC--EDDV-DIIESVKTH--CKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       460 ~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~IL--it--N~~~-~I~~aLrSR--~~~I~F~ppt~eei~~iL  528 (629)
                      ...||||||++.+   .......|..+++.+   ..+|+  ++  ++.. .+.+.+..+  +.++.+..-+.+.+...+
T Consensus       105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i  180 (189)
T 2i3b_A          105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI  180 (189)
T ss_dssp             CCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred             CCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence            3459999998777   345677777787743   22443  22  3332 456666664  467777766655555444

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.97  E-value=0.16  Score=55.70  Aligned_cols=36  Identities=33%  Similarity=0.498  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +++.|..+++.+   .++|+||+|+|||+|+..++....
T Consensus       141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence            445554444432   589999999999999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.97  E-value=0.027  Score=62.53  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...++..|.-.+..|.  .++|.||+|+||||++++++..+
T Consensus       246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            3556677777777765  49999999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=93.93  E-value=0.061  Score=50.67  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|++.+..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999986654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.91  E-value=0.12  Score=49.83  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.90  E-value=0.086  Score=66.11  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||||||||++|..++...
T Consensus        36 i~lI~G~pGsGKT~LAlqla~~~   58 (1706)
T 3cmw_A           36 IVEIYGPESSGKTTLTLQVIAAA   58 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.89  E-value=0.024  Score=54.26  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.|++|+||||+++.|++.+
T Consensus        23 ~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           23 IIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.82  E-value=0.15  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.80  E-value=0.22  Score=45.59  Aligned_cols=22  Identities=32%  Similarity=0.711  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=93.80  E-value=0.63  Score=56.56  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      |..++..+...+..|....+|++||.|+|||.+|...|-.
T Consensus       608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~  647 (1151)
T 2eyq_A          608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL  647 (1151)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence            4445555555555666558999999999999988755544

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=93.74  E-value=0.059  Score=61.05  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++...+.+...+.   .+.+++.||||||||+++..++..+.
T Consensus       182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~  220 (624)
T 2gk6_A          182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA  220 (624)
T ss_dssp             CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            5666666766664   24689999999999999888887764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.72  E-value=0.11  Score=47.95  Aligned_cols=22  Identities=41%  Similarity=0.699  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.71  E-value=0.035  Score=53.92  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||||+|||+++..+|..+
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999888765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.70  E-value=0.17  Score=47.32  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.67  E-value=0.12  Score=48.39  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999865

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.67  E-value=0.23  Score=57.74  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||.|+||||+.+.++..+
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhhh
Confidence            47799999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.66  E-value=0.15  Score=47.62  Aligned_cols=22  Identities=36%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999888764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.61  E-value=0.092  Score=48.02  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998854

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=93.58  E-value=0.61  Score=55.86  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++|+.+|.|+|||.++...+..
T Consensus       103 ~vLV~apTGSGKTlva~lai~~  124 (1010)
T 2xgj_A          103 SVLVSAHTSAGKTVVAEYAIAQ  124 (1010)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHH
Confidence            6999999999999987554433

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.58  E-value=0.046  Score=60.73  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             cHHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          363 HRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       363 ~e~~~~~Lk~~L--~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..++.+.|.+..  .......|+|.|.+||||||+|++||+.|.
T Consensus       377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            466677777766  222233688999999999999999999984

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.54  E-value=0.038  Score=53.29  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|.|.|++|+||||+++.|+.
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=93.53  E-value=0.27  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.53  E-value=0.036  Score=54.55  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999875

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.52  E-value=0.038  Score=55.70  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||+|+|||||+..++..+.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999998654

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=93.52  E-value=1.3  Score=47.41  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=15.7

Q ss_pred             CeEEEEcCCCCcHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMA  398 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAra  398 (629)
                      .++++.+|+|+|||..+..
T Consensus        94 ~d~i~~a~TGsGKT~a~~l  112 (434)
T 2db3_A           94 RDLMACAQTGSGKTAAFLL  112 (434)
T ss_dssp             CCEEEECCTTSSHHHHHHH
T ss_pred             CCEEEECCCCCCchHHHHH
Confidence            3699999999999995443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.51  E-value=0.16  Score=45.71  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|.|++|+|||+|++.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999998863

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.50  E-value=0.23  Score=45.76  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998854

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=93.49  E-value=0.91  Score=44.38  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=16.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLA  400 (629)
                      .++++.+|+|+|||.++...+
T Consensus        61 ~~~l~~a~TGsGKT~~~~~~~   81 (253)
T 1wrb_A           61 RDIMACAQTGSGKTAAFLIPI   81 (253)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHHHH
Confidence            369999999999998655433

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.48  E-value=0.12  Score=49.13  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.45  E-value=0.025  Score=55.25  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=14.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-HHH
Q 036742          381 HILIKGQSGSGKRALAMALL-HEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLA-keL  403 (629)
                      .+.|.||+|+||||++++|+ ..+
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            47799999999999999999 764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.45  E-value=0.052  Score=51.59  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++.+.|.|++|+||||++..++..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            55688999999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.44  E-value=0.04  Score=55.91  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||||+||||+++.+|..+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.39  E-value=0.029  Score=59.15  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=23.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +.|+|.||+|+|||+|+..||+.+.+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~   66 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPL   66 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence            36889999999999999999998743

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.34  E-value=0.046  Score=54.03  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|+||||++++|+..+
T Consensus        27 iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46699999999999999999976

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.33  E-value=0.11  Score=47.38  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..++..
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=93.28  E-value=0.37  Score=54.98  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLA  400 (629)
                      .++++.||+|+|||+.+...+
T Consensus        41 ~~~lv~apTGsGKT~~~~l~i   61 (702)
T 2p6r_A           41 KNLLLAMPTAAGKTLLAEMAM   61 (702)
T ss_dssp             SCEEEECSSHHHHHHHHHHHH
T ss_pred             CcEEEEcCCccHHHHHHHHHH
Confidence            479999999999999885443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.26  E-value=0.058  Score=51.31  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=23.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.++|.||+|+||||++..++..+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            46788999999999999999998864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.25  E-value=0.13  Score=48.80  Aligned_cols=22  Identities=14%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.24  E-value=0.051  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |.|+|++||||||+++.++..+
T Consensus        15 IgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            6799999999999999999975

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=93.23  E-value=0.1  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998854

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.22  E-value=0.18  Score=46.28  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.18  E-value=0.063  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.|++|+||||+++.|+..+
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999986

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.18  E-value=0.047  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|.|++|+||||+++.|+..+
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58899999999999999999985

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.17  E-value=0.06  Score=55.70  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||.||||||+++.+|..+.
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            577999999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.08  E-value=0.13  Score=48.60  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|+..++.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.06  E-value=0.83  Score=49.30  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|-.++ .|-.+  -++|.|+||+|||++|..+|..+.
T Consensus       189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344555 44333  488999999999999999998763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.03  E-value=0.55  Score=44.35  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..|+|.|++|+|||+|+..+...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999865

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.02  E-value=0.32  Score=52.36  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          376 DGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -+....++|.||+|||||+|++.|++.+.
T Consensus       171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             ecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            33444799999999999999999998763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.02  E-value=0.096  Score=48.69  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ...|+|.|++|+|||+++.+++..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999865

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=92.94  E-value=0.067  Score=51.26  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999995443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.94  E-value=0.054  Score=50.48  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ..+|+||.|+|||+++.+|+..+.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4679999999999999999988643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.94  E-value=0.12  Score=54.09  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||+||||||++++|+..+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            466999999999999999998863

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.93  E-value=0.055  Score=56.16  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||+|+|||||+++|+..+.
T Consensus        92 ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           92 IIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHhhcc
Confidence            466999999999999999999874

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=92.92  E-value=0.45  Score=54.47  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             CeEEEEcCCCCcHHHHHH-HHHHHH
Q 036742          380 PHILIKGQSGSGKRALAM-ALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAr-aLAkeL  403 (629)
                      .++|+.||+|+|||+++. ++...+
T Consensus        40 ~~~lv~apTGsGKT~~~~l~il~~~   64 (720)
T 2zj8_A           40 KNALISIPTASGKTLIAEIAMVHRI   64 (720)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHH
Confidence            479999999999999884 444443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.91  E-value=0.056  Score=56.11  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|++.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            57899999999999999999987

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=92.89  E-value=0.18  Score=47.89  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|+..+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=92.86  E-value=0.052  Score=57.26  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||+|+|||++|..||..+.
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcC
Confidence            578999999999999999999863

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=92.80  E-value=0.24  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..|+|.|++|+|||||+..+...
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999998753

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=92.73  E-value=0.35  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=18.0

Q ss_pred             CeEEEEcCCCCcHHHHH-HHHHHH
Q 036742          380 PHILIKGQSGSGKRALA-MALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLA-raLAke  402 (629)
                      .++|+.||+|+|||.++ .++...
T Consensus         3 ~~~lv~a~TGsGKT~~~l~~~l~~   26 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRVLPQLVRE   26 (431)
T ss_dssp             CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            47999999999999986 445433

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=92.72  E-value=0.1  Score=61.09  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ++...+.+...+..   +.++|.||||||||+++..++..+..
T Consensus       358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~  397 (800)
T 2wjy_A          358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR  397 (800)
T ss_dssp             CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            56666666666643   46899999999999998888877653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.68  E-value=0.065  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      +.++|.|++|+|||+++..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.66  E-value=0.11  Score=53.37  Aligned_cols=24  Identities=29%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||+|+||||++++|+..+.
T Consensus        82 iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            467999999999999999999863

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.62  E-value=0.33  Score=44.97  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6899999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=92.62  E-value=0.37  Score=48.33  Aligned_cols=20  Identities=35%  Similarity=0.667  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLA  400 (629)
                      .|+|.|.+|+|||||+.++.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.58  E-value=0.07  Score=52.27  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|.|.|++|+||||+++.|+..+...
T Consensus         8 ~i~~eG~~gsGKsT~~~~l~~~l~~~   33 (213)
T 4edh_A            8 FVTLEGPEGAGKSTNRDYLAERLRER   33 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            47799999999999999999998543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=92.58  E-value=0.41  Score=50.27  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|.|+||+|||++|..+|..+.
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999998763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.49  E-value=0.35  Score=48.34  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..|+|.|++|+|||+|+.++...
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999998854

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.47  E-value=0.12  Score=54.20  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          376 DGNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .+..+.|.|.|+||+||||++..++..+..
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344557889999999999999999988743

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.44  E-value=0.071  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+|+||+|||++|..+|..
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4889999999999999887754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.43  E-value=0.069  Score=56.72  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++++++..+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            588999999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.41  E-value=0.44  Score=44.16  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+..+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999988765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.36  E-value=0.053  Score=51.40  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +.+.|.||+|+|||||+++|++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            45789999999999999999998743

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=92.35  E-value=0.06  Score=54.77  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|.|.|++|+||||+|+.|+.
T Consensus        77 iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999994

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=92.34  E-value=0.69  Score=47.34  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|...+...
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999987653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.30  E-value=0.054  Score=53.11  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+|||++|..+++..
T Consensus        36 ~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           36 GVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999999874

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=92.26  E-value=0.18  Score=58.86  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||.|+||||+.++++...
T Consensus       609 i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.26  E-value=0.087  Score=55.66  Aligned_cols=34  Identities=38%  Similarity=0.596  Sum_probs=27.4

Q ss_pred             HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.+.-.+..|.  .++|.||.|+||||++++++..+
T Consensus       166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence            45555556665  58999999999999999999875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.24  E-value=0.078  Score=54.79  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||.|+||||+++.+|..+.
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999874

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=92.23  E-value=0.077  Score=59.47  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          364 RHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       364 e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++.+.+.....  -.....+.|.|++|+||||++++|++.+.
T Consensus       352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            345555555431  11122578999999999999999999974

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.20  E-value=0.4  Score=56.86  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.||.|+||||+.+.++..
T Consensus       675 i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          675 VMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHHHHHHHHHH
Confidence            4789999999999999998754

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=92.20  E-value=1.5  Score=48.02  Aligned_cols=31  Identities=13%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHH
Q 036742          368 QLLKELVVDGNCPHILIKGQSGSGKRALAMAL  399 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraL  399 (629)
                      +.+..++ .+....+|+.+|+|+|||..+...
T Consensus       101 ~~i~~~l-~~~~~~~lv~apTGsGKTl~~~lp  131 (563)
T 3i5x_A          101 KTIKPIL-SSEDHDVIARAKTGTGKTFAFLIP  131 (563)
T ss_dssp             HHHHHHH-SSSSEEEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHh-cCCCCeEEEECCCCCCccHHHHHH
Confidence            3444444 233457999999999999865543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.17  E-value=0.066  Score=52.63  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.|++.+.
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999874

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.13  E-value=0.08  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||||++.++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.04  E-value=0.084  Score=55.27  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||+|+||||+++.||..+.
T Consensus       131 vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          131 VIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            477999999999999999999864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.03  E-value=0.079  Score=58.89  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|.||+||||+|+.|++.+.
T Consensus        37 lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           37 VIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999873

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=91.98  E-value=0.072  Score=56.04  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|+||+|+|||||++.++..+
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999999875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.96  E-value=0.087  Score=54.60  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++..+|..+.
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHHH
Confidence            477999999999999999998874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.90  E-value=0.067  Score=53.10  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||+|+||||+++.|+..+.
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999874

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=91.85  E-value=0.13  Score=60.10  Aligned_cols=38  Identities=18%  Similarity=0.427  Sum_probs=28.3

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++...+.+...+.   .+.+|+.||||||||+++..++..+
T Consensus       362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l  399 (802)
T 2xzl_A          362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL  399 (802)
T ss_dssp             CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence            5666666666654   3468999999999999887776655

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.78  E-value=0.085  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.|++|+|||||++.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.71  E-value=0.082  Score=55.59  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||+|+|||||+++|++.+
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=91.70  E-value=0.074  Score=52.78  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47799999999999999999764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=91.70  E-value=0.082  Score=54.75  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||||+|||++|..+|..+
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHhHHHHHHHHHH
Confidence            58899999999999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.69  E-value=0.067  Score=52.22  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          351 KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       351 KyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ..+|+++.+    ..+++.    +..|.  .+.|.||.|+|||||+++++..
T Consensus         4 ~i~pk~~g~----~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A            4 VIRPKTLGQ----KHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CCCCCSHHH----HHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccccCCHhH----HHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence            456766643    223332    34554  4779999999999999999986

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=91.69  E-value=0.43  Score=56.70  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|.||.|+||||+.+.++.
T Consensus       664 i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=91.68  E-value=0.17  Score=55.89  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||.|+||||++++|+..+.
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHHhh
Confidence            477999999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.60  E-value=0.095  Score=53.92  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|.||+|+||||++..+|..+.
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.60  E-value=0.037  Score=55.27  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..|+|.|++|+||||+++.|+..+
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            368899999999999999999886

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.59  E-value=0.08  Score=56.20  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46799999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=91.59  E-value=0.09  Score=52.45  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..+.|.||.|+|||||+++++..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            357799999999999999999865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=91.58  E-value=0.072  Score=52.41  Aligned_cols=23  Identities=39%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.49  E-value=0.1  Score=52.06  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .|+|.|++|+||||+++.++..+..
T Consensus        29 ~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           29 FIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             EEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=91.47  E-value=0.61  Score=46.38  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|.+|+|||+|+.++...
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=91.36  E-value=0.084  Score=52.43  Aligned_cols=50  Identities=12%  Similarity=-0.049  Sum_probs=31.9

Q ss_pred             eEEEEEccch-hhHHHHHHHHHHHh---ccCCCcEEEEEecCCccchHHHhhcceE
Q 036742          462 AMIVIYEVDK-AAEHIQYLIKWIMD---GYTDSCKLILCCEDDVDIIESVKTHCKV  513 (629)
Q Consensus       462 kVIIIDEID~-Ls~~~q~aLlrilE---e~~~~~~~ILitN~~~~I~~aLrSR~~~  513 (629)
                      +|||+||.-. |.......+...+.   .......+|+++++...+.  +..|+.+
T Consensus       147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~  200 (237)
T 2cbz_A          147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIV  200 (237)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEE
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEE
Confidence            4999999865 55666666666662   3334567888888876542  3445433

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=91.35  E-value=2.1  Score=47.45  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHH
Q 036742          368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLA  400 (629)
                      +.+..++. +....+|+.+|+|+|||.++...+
T Consensus        50 ~~i~~il~-~~~~dvlv~apTGsGKTl~~~lpi   81 (579)
T 3sqw_A           50 KTIKPILS-SEDHDVIARAKTGTGKTFAFLIPI   81 (579)
T ss_dssp             HHHHHHHC-SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHc-cCCCeEEEEcCCCcHHHHHHHHHH
Confidence            34444442 233479999999999998655443

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=91.33  E-value=3.3  Score=44.73  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+.+|+|+|||..+...+...
T Consensus        23 ~~~l~~~~tGsGKT~~~~~~~~~~   46 (556)
T 4a2p_A           23 KNALICAPTGSGKTFVSILICEHH   46 (556)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCChHHHHHHHHHHHH
Confidence            369999999999999887766554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=91.31  E-value=0.61  Score=47.83  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+.|.|.||+|||||+.++...
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998854

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.31  E-value=0.15  Score=56.98  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             cHHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          363 HRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       363 ~e~~~~~Lk~~L--~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..++.+.+....  .......|+|.|++|+||||+|+.|++.+.
T Consensus       354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            355666677666  222223578999999999999999999874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.31  E-value=0.92  Score=49.24  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|.|+||+|||++|..+|..+.
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a  222 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMS  222 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHH
Confidence            488999999999999999998763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=91.28  E-value=0.12  Score=58.24  Aligned_cols=40  Identities=28%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHH-cCCCC-eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          365 HEAQLLKELVV-DGNCP-HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       365 ~~~~~Lk~~L~-~g~~p-~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ++.+.+++.+. .+..+ .|+|.|++|+||||+|++|++.+.
T Consensus       380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            34444444441 12222 578999999999999999999975

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=91.28  E-value=0.1  Score=50.44  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=23.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      +.|.|.||+|||||++++.||+.| |..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~l-g~~   33 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHY-NIP   33 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT-TCC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHh-CcC
Confidence            357899999999999999999997 543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=91.27  E-value=0.069  Score=54.72  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|.|.||+|+||||+|+.|+..+.
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            577999999999999999998763

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=91.21  E-value=1.3  Score=55.95  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHH
Q 036742          366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLA  400 (629)
                      ..+.+..++..+.  ++|+.+|.|+|||.+|....
T Consensus       931 Q~q~~~~l~~~~~--nvlv~APTGSGKTliaelai  963 (1724)
T 4f92_B          931 QTQVFNTVYNSDD--NVFVGAPTGSGKTICAEFAI  963 (1724)
T ss_dssp             HHHHHHHHHSCCS--CEEEECCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCC--cEEEEeCCCCCchHHHHHHH
Confidence            3344555555443  79999999999999887544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.18  E-value=0.11  Score=56.15  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||+|+|||+||..||..+.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCC
Confidence            578999999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.18  E-value=0.12  Score=54.94  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+.|.||.|+||||+++.||..+.
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhhcc
Confidence            477999999999999999999874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=91.16  E-value=0.12  Score=50.96  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+++.++..+.
T Consensus         7 ~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            7 LILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999999999999999999974

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=91.11  E-value=0.97  Score=49.45  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|.|+||+|||++|..+|..+.
T Consensus       244 l~li~G~pG~GKT~lal~~a~~~a  267 (503)
T 1q57_A          244 VIMVTSGSGMVMSTFVRQQALQWG  267 (503)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             EEEEeecCCCCchHHHHHHHHHHH
Confidence            478999999999999999998863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.07  E-value=0.1  Score=55.23  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46799999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.07  E-value=0.13  Score=51.31  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +-|.||||+||||+|+.|++.+
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eeeECCCCCCHHHHHHHHHHHh
Confidence            5699999999999999999986

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=91.06  E-value=0.12  Score=50.62  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|.|.|++|+||||+++.++..+...
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999988533

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=91.05  E-value=0.092  Score=52.98  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.02  E-value=0.11  Score=55.75  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            46799999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.00  E-value=0.11  Score=55.30  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46799999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.99  E-value=0.11  Score=55.21  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46799999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=90.98  E-value=0.13  Score=50.83  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .|.|.|++|+||||+++.+++.+..
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5789999999999999999998743

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=90.97  E-value=0.1  Score=48.60  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|.|++|+|||+|++.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999886

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=90.96  E-value=0.11  Score=53.33  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||||+|||++|..+|..+
T Consensus       100 i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A          100 VTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=90.94  E-value=0.12  Score=56.32  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|.||+||||+++.+++.+.
T Consensus        41 ~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           41 LIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=90.90  E-value=0.1  Score=51.28  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++++..+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=90.86  E-value=0.12  Score=51.75  Aligned_cols=41  Identities=7%  Similarity=0.006  Sum_probs=27.4

Q ss_pred             EEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccc
Q 036742          463 MIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDI  503 (629)
Q Consensus       463 VIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I  503 (629)
                      |||+||.-. |.......+..++.... .+..+|+++++...+
T Consensus       164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~  206 (250)
T 2d2e_A          164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL  206 (250)
T ss_dssp             EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            999999765 45555556666655442 356788888876543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.85  E-value=0.11  Score=55.34  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=90.85  E-value=0.12  Score=52.40  Aligned_cols=41  Identities=7%  Similarity=0.040  Sum_probs=28.8

Q ss_pred             EEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccc
Q 036742          463 MIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDI  503 (629)
Q Consensus       463 VIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I  503 (629)
                      |||+||.-. |.......+..++.... ....+|+++++...+
T Consensus       185 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~  227 (267)
T 2zu0_C          185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL  227 (267)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH
Confidence            999999865 56666677777776553 356688888876543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=90.81  E-value=0.1  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.80  E-value=0.11  Score=55.23  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46799999999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=90.76  E-value=0.1  Score=51.81  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=90.69  E-value=0.13  Score=46.83  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||+|+++++..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999853

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=90.69  E-value=0.11  Score=55.89  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+||||||||||++.++-.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHH
Confidence            4789999999999999987754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=90.67  E-value=0.11  Score=51.79  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.63  E-value=0.097  Score=55.29  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46799999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=90.61  E-value=0.11  Score=51.99  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=90.57  E-value=0.11  Score=51.25  Aligned_cols=41  Identities=7%  Similarity=-0.176  Sum_probs=27.3

Q ss_pred             eEEEEEccch-hhHHHHHHHHHH-HhccCCCcEEEEEecCCcc
Q 036742          462 AMIVIYEVDK-AAEHIQYLIKWI-MDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       462 kVIIIDEID~-Ls~~~q~aLlri-lEe~~~~~~~ILitN~~~~  502 (629)
                      .|||+||.-. |.......+... +........+|+++++...
T Consensus       150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~  192 (229)
T 2pze_A          150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH  192 (229)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred             CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence            4999999765 456666666664 4444445678888877543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=90.51  E-value=0.11  Score=52.98  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47799999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.50  E-value=0.14  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.687  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++||.|++|+||||+|.++...
T Consensus        18 gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            6999999999999999999874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=90.45  E-value=0.11  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47799999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=90.38  E-value=0.18  Score=46.23  Aligned_cols=26  Identities=46%  Similarity=0.548  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      ..+|+||.|+|||+++.||.-.+++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~g~   50 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLYWP   50 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999877664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=90.30  E-value=0.16  Score=45.40  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|+.++...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=90.30  E-value=0.12  Score=52.48  Aligned_cols=41  Identities=7%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             eEEEEEccch-hhHHHHHHHHHHHhccCC--CcEEEEEecCCcc
Q 036742          462 AMIVIYEVDK-AAEHIQYLIKWIMDGYTD--SCKLILCCEDDVD  502 (629)
Q Consensus       462 kVIIIDEID~-Ls~~~q~aLlrilEe~~~--~~~~ILitN~~~~  502 (629)
                      .|||+||.-. |.......+..++.....  ...+|+++++...
T Consensus       176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~  219 (271)
T 2ixe_A          176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL  219 (271)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            4999999765 456666666776665532  5678888887543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.30  E-value=0.16  Score=45.61  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|+..++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.28  E-value=0.19  Score=45.66  Aligned_cols=24  Identities=33%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ...|+|.|++|+|||+|+..+...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347999999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=90.27  E-value=0.12  Score=52.35  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46799999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=90.24  E-value=0.12  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999864

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=90.23  E-value=0.15  Score=57.99  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||+|++|++.|.
T Consensus        54 lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           54 TVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=90.20  E-value=0.12  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47799999999999999999865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=90.19  E-value=0.12  Score=51.77  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47799999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.13  E-value=0.14  Score=55.64  Aligned_cols=24  Identities=42%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.|++|+||||++..+|..+.
T Consensus       101 vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          101 VILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998863

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.08  E-value=0.13  Score=55.07  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             CeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      ++|||+||.-. |.......++..+........+|+++++.+.+
T Consensus       174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~  217 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM  217 (390)
T ss_dssp             CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence            34999999643 45555566666665544567788888876443

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=90.07  E-value=0.51  Score=52.14  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+|+.+|+|+|||..+...+-
T Consensus        42 d~lv~apTGsGKTl~~~lp~l   62 (523)
T 1oyw_A           42 DCLVVMPTGGGKSLCYQIPAL   62 (523)
T ss_dssp             CEEEECSCHHHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHHH
Confidence            699999999999987665443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=90.06  E-value=0.16  Score=46.80  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|.|++|+|||+|++.++..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=90.06  E-value=0.098  Score=55.33  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++||..+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46799999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.04  E-value=0.18  Score=45.09  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|++|+|||+|+..+...-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.96  E-value=0.13  Score=51.78  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=89.96  E-value=0.13  Score=51.90  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46799999999999999999764

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=89.95  E-value=0.43  Score=51.77  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             CeEEEEcCCCCcHHHH-HHHHHHHH
Q 036742          380 PHILIKGQSGSGKRAL-AMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtL-AraLAkeL  403 (629)
                      ..+|+.||+|+|||+. +..+...+
T Consensus        22 ~~vlv~a~TGsGKT~~~~l~il~~~   46 (459)
T 2z83_A           22 QMTVLDLHPGSGKTRKILPQIIKDA   46 (459)
T ss_dssp             CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3799999999999997 44444443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=89.94  E-value=0.95  Score=46.35  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+.|.|.||+|||||+.++...
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988754

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=89.92  E-value=3.4  Score=44.45  Aligned_cols=24  Identities=17%  Similarity=0.337  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+.+|+|+|||..+...+.+.
T Consensus        20 ~~~l~~~~tGsGKT~~~~~~~~~~   43 (555)
T 3tbk_A           20 KNTIICAPTGCGKTFVSLLICEHH   43 (555)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHH
Confidence            369999999999999877776554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.85  E-value=0.29  Score=45.24  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742          377 GNCPHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       377 g~~p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .....|+|.|++|+|||+|+..+..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3445799999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	629
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	7e-20
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	8e-20
d1iqpa2	231	c.37.1.20 (A:2-232) Replication factor C {Archaeon	2e-19
d1sxjb2	224	c.37.1.20 (B:7-230) Replication factor C4 {Baker's	2e-18
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	3e-16
d1sxjc2	227	c.37.1.20 (C:12-238) Replication factor C3 {Baker'	2e-14
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	1e-11
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	3e-11
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	1e-10
d1sxje1	99	a.80.1.1 (E:256-354) Replication factor C5 {Baker'	2e-09
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-06
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	6e-06
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.002

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 87.1 bits (215), Expect = 7e-20
 Identities = 43/249 (17%), Positives = 81/249 (32%), Gaps = 15/249 (6%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGD 406
            A K +P +    +   H    L   +  G   H  L  G  G GK ++A  L   +  +
Sbjct: 2   LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61

Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV- 465
                  P  V            +++     A    +   +++ DN+   P      +  
Sbjct: 62  TGITAT-PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 120

Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
           I EV   + H    +   ++   +  K +L   D   +  ++ + C    +      +I 
Sbjct: 121 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 180

Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV 585
             L  I  +E           +A  A+ +LR A+               DQ I  G  +V
Sbjct: 181 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT------------DQAIASGDGQV 228

Query: 586 LIELAAEIL 594
             +  + +L
Sbjct: 229 STQAVSAML 237

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.7 bits (213), Expect = 8e-20
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 6/231 (2%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+      H   +LK+ +   N PH+L  G  G+GK +  +AL  E+YG  
Sbjct: 2   WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
               +         AS    + +      N     +   K  + +L   P     +I++ 
Sbjct: 62  LMKSRILEL----NASDERGISIVREKVKNFARLTV--SKPSKHDLENYPCPPYKIIILD 115

Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++  M+ Y+   +  L C     II+ + + C   +         ++ 
Sbjct: 116 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDR 175

Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
           L  I+ +E+         +I   +  +LR+ I  L++         D + I
Sbjct: 176 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNI 226

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 85.4 bits (210), Expect = 2e-19
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 17/228 (7%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P  L+  +   H  + LK  V  G+ PH+L  G  G GK   A+AL  E+    
Sbjct: 14  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL---- 69

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
            + E W    L   AS    + +                             S  +I + 
Sbjct: 70  -FGENWRHNFLELNASDERGINVIREKVKEFARTKP------------IGGASFKIIFLD 116

Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D   +  Q  ++  M+ ++ + + IL C     IIE +++ C + +  P    +I + 
Sbjct: 117 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 176

Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
           L  IA  E  +L+      I   A+ ++R+AI  L+A  AL+    D+
Sbjct: 177 LRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDE 224

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 2e-18
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 16/222 (7%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P  L+  + ++     L+++  DGN PH++I G  G GK      L HE+ G +
Sbjct: 5   WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 64

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
             +                 V   +   A  K  L     +I              +++ 
Sbjct: 65  YADGVLELN--ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKI--------------VILD 108

Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++  M+ Y++S +    C     IIE +++ C +++       ++++ 
Sbjct: 109 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 168

Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
           L+QI + ED   +      I   A+ ++R+AI  L++  A +
Sbjct: 169 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH 210

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 3e-16
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 20/251 (7%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYGD 406
           W DK++P SLN    +      LK L     + PH+L+ G +G+GK+   MALL  I+G 
Sbjct: 1   WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60

Query: 407 ACWNEKWPTQV----------LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
             +  K   +           L  V+S  H      ++  N +  +  L+KE+     + 
Sbjct: 61  GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 120

Query: 457 PEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
            + S          ++I E +   +  Q  ++  M+ Y+ + +LI+ C+    II  +K+
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180

Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAK-IATKAKQNLRKAIMALEACKAL 568
            C +I+   P   EI  +L  +   E   L      K IA  +  NLR +++ LE+    
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240

Query: 569 N-YPFADDQPI 578
           N        PI
Sbjct: 241 NELALKSSSPI 251

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 2e-14
 Identities = 43/247 (17%), Positives = 95/247 (38%), Gaps = 25/247 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
           W +K++P +L+           +++ V +G  PH+L  G  G+GK +  +AL  EI    
Sbjct: 4   WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI---- 59

Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
            + + +   VL   AS    +++  N   +         K  +            +I++ 
Sbjct: 60  -YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK------------LIILD 106

Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
           E D      Q  ++ +++ YT + +  +       +  ++ + C   +  P     I   
Sbjct: 107 EADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR 166

Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI 587
           +  +   E   LS      +   +  ++R+ +  L++CKA      D+       +E+  
Sbjct: 167 IANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKA----TLDNP----DEDEISD 218

Query: 588 ELAAEIL 594
           ++  E  
Sbjct: 219 DVIYECC 225

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 33/246 (13%), Positives = 74/246 (30%), Gaps = 25/246 (10%)

Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVD-----------------GNCPHILIKGQSGS 390
           W  K+ P++L     ++     LK  + +                 G     ++ G  G 
Sbjct: 4   WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI 63

Query: 391 GKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR 450
           GK   A  +  E+  D                  +  +       A    +++G  K   
Sbjct: 64  GKTTAAHLVAQELGYDILEQN--------ASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115

Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
           +   +  +    ++   +     +             T +  +++C E ++  +      
Sbjct: 116 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 175

Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
           C  I+   P  + I   L+ IA +E F L      ++    + ++R+ I  L        
Sbjct: 176 CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTK 235

Query: 571 PFADDQ 576
               + 
Sbjct: 236 TINHEN 241

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 32/211 (15%), Positives = 74/211 (35%), Gaps = 31/211 (14%)

Query: 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH 427
           + LK ++       ILI G+  S  R +++ L   +        K    + +        
Sbjct: 4   ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKF---PPKASDVLEIDPEGENIG 60

Query: 428 VELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI-YEVDKAAEHIQYLIKWIMDG 486
           ++                ++ I+D L  +PE+     VI ++ ++  +         ++ 
Sbjct: 61  ID---------------DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE 105

Query: 487 YTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP---------VTHEIMEVLIQIARKEDF 537
             +   ++L       ++ ++K+    + V+ P            ++ E L  + R    
Sbjct: 106 PPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKT 165

Query: 538 DLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
            L    A K+  +    L +++  LE  K L
Sbjct: 166 ALE---AYKLGAEKLSGLMESLKVLETEKLL 193

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 24/205 (11%), Positives = 54/205 (26%), Gaps = 9/205 (4%)

Query: 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421
            R + + L      G   H +LI+   G G  AL  AL   +        K         
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66

Query: 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVD---KAAEHIQY 478
              A        L        +G+         +          +  V       +    
Sbjct: 67  LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126

Query: 479 LIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFD 538
            +   ++         L   +   ++ ++++ C++  + PP     +  L       +  
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181

Query: 539 LSMTFAAKIATKAKQNLRKAIMALE 563
           +S          +  +   A+   +
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQ 206

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 582 WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
           W  V+ +L  +I+ + S   L+  R  +  LLA  +   +IL
Sbjct: 4   WIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 45

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 354 PSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
           P +L+ +I      Q L+  +           H+L+ G  G GK  LA  + HE      
Sbjct: 5   PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE------ 58

Query: 409 WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYE 468
                   V + V S     +        A     G +  I +   ++ +    +    E
Sbjct: 59  ------LGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112

Query: 469 VDKAAEHIQYLIKWIMDGYTDSCKLILCC---EDDVDIIESVKTHCKVIKVDPPVTHEIM 525
                  I            +  +  L        +     +     V  ++     E+ 
Sbjct: 113 DFVMDIVIGQGPA-ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELA 171

Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
           + +++ AR     ++   A +I  +++  +R A       +  
Sbjct: 172 QGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 214

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 28/248 (11%)

Query: 354 PSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
           P SL+ FI   +  + L   +           H+L+ G  G GK  LA  +  E+  +  
Sbjct: 5   PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 64

Query: 409 WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYE 468
                         +S   +    ++ A       G V  I +   +   V   +    E
Sbjct: 65  V-------------TSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIE 111

Query: 469 VDKAAE-HIQYLIKWIMDGYTDSCKLIL-CCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
             +      +      +        L+       +           ++++D     E+ E
Sbjct: 112 DFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKE 171

Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
           ++ + A   D ++    A  IA +++   R AI   +           D    +  + + 
Sbjct: 172 IIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKR--------VRDMLTVVKADRIN 223

Query: 587 IELAAEIL 594
            ++  + +
Sbjct: 224 TDIVLKTM 231

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 28/246 (11%), Positives = 58/246 (23%), Gaps = 31/246 (12%)

Query: 345 RPFWADKHQPSSLNGFICHRHE-----AQLLKELVVDGNC--PHILIKGQSGSGKRALAM 397
              ++  + P  L     HR +       LL   + +     P   + G+ G+GK     
Sbjct: 6   DSVFSPSYVPKRLP----HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 61

Query: 398 ALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
            L             +    +    ++              +  L            +  
Sbjct: 62  KLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE 121

Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK----- 512
                 +V+ +    A  I      +           +           +          
Sbjct: 122 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGI 181

Query: 513 ----VIKVDPPVTHEIMEVLIQIARKE-----------DFDLSMTFAAKIATKAKQNLRK 557
               VI+  P    +I ++L+  A+                  +T A       + + R 
Sbjct: 182 MGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARL 241

Query: 558 AIMALE 563
           AI  L 
Sbjct: 242 AIDILY 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	100.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	100.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	100.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	100.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.95
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.94
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.84
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.83
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.82
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.77
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.7
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.57
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.56
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.45
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.42
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.41
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.38
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.34
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.26
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.09
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.03
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.99
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.74
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.51
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.25
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.21
d1sxje1	99	Replication factor C5 {Baker's yeast (Saccharomyce	98.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.59
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.58
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.5
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.46
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.39
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.28
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.28
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.23
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.22
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.17
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.09
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.07
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.04
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.04
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.8
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.8
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	96.77
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.76
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.76
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.73
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.72
d1okkd2	207	GTPase domain of the signal recognition particle r	96.64
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.63
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.55
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.54
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.53
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.51
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.51
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.51
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.47
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.44
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.4
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.4
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.34
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.32
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.27
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.27
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.25
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	96.23
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.19
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.17
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.16
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	96.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.09
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.05
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.05
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.04
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	95.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	95.84
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.75
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.71
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.69
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.68
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.66
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.65
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.62
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.61
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.53
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.5
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.49
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.42
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.35
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.15
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.09
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.07
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.0
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.94
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.86
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.82
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.74
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.61
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.6
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.56
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.47
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.46
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.45
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.44
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.4
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.32
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.25
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.16
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.15
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.1
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.08
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	93.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.88
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.81
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.77
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.62
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.61
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.47
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.43
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.36
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.33
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.26
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.22
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.14
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.04
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.91
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.83
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.74
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	92.62
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.46
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.44
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.35
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.3
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.22
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.17
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.07
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.05
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	91.91
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	91.73
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.6
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	91.58
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	91.56
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.44
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	90.93
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.92
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	90.81
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.79
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	90.78
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.69
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.67
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.65
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	90.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.25
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	90.17
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.17
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.11
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	90.09
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	90.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.89
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.76
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	89.73
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.58
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.53
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.52
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.5
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.43
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.05
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	88.91
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	88.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.59
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.38
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	87.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.91
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	87.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	87.86
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	87.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.76
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	87.54
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	87.41
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.28
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.21
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	87.0
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	86.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	86.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	86.59
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	86.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	86.02
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.88
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	85.53
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	85.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	85.11
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	85.05
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	84.81
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	84.79
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	84.0
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.44
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.44
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	82.76
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	82.2
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.13
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.72
d1jqlb_	140	delta subunit of DNA polymerase III, N-domain {Esc	81.06
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	80.96
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	80.92
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	80.75

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-36  Score=294.82  Aligned_cols=208  Identities=23%  Similarity=0.418  Sum_probs=183.0

Q ss_pred             CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742          345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS  424 (629)
Q Consensus       345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS  424 (629)
                      ..+|++||||++|+|++||+++++.|+.|+..+..||+||+||||||||++|+++|+++.+...               .
T Consensus         2 ~~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~---------------~   66 (224)
T d1sxjb2           2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY---------------A   66 (224)
T ss_dssp             CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH---------------H
T ss_pred             CCchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcccc---------------c
Confidence            4579999999999999999999999999999999999999999999999999999999865532               1


Q ss_pred             cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742          425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII  504 (629)
Q Consensus       425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~  504 (629)
                      ..++++++++.++.. .+...+...............+||||||+|.+....+++|+..++++...+.++++|+....++
T Consensus        67 ~~~~~~n~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~  145 (224)
T d1sxjb2          67 DGVLELNASDDRGID-VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKII  145 (224)
T ss_dssp             HHEEEECTTSCCSHH-HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             cccccccccccCCce-ehhhHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence            237889998877754 2333444444443333445567999999999999999999999999999999999999999999


Q ss_pred             HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      ++|++||..+.|++|+.+++..+|.+++.+|++.+++++++.|+..++||+|+||+.||.+...
T Consensus       146 ~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~  209 (224)
T d1sxjb2         146 EPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG  209 (224)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999987643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=289.55  Aligned_cols=206  Identities=20%  Similarity=0.371  Sum_probs=177.2

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA  425 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~  425 (629)
                      .+|++||+|++|+||+|++++++.|+.|+..+..||+||+||||+|||++|+++|+++.+..+               ..
T Consensus         2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~---------------~~   66 (227)
T d1sxjc2           2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY---------------SN   66 (227)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH---------------HH
T ss_pred             CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCC---------------cc
Confidence            469999999999999999999999999999999999999999999999999999999876643               11


Q ss_pred             ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchH
Q 036742          426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE  505 (629)
Q Consensus       426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~  505 (629)
                      .++++++++..+... ......... ..........+||||||+|.+....+++|+++++++...+.++++||....+++
T Consensus        67 ~~~e~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~  144 (227)
T d1sxjc2          67 MVLELNASDDRGIDV-VRNQIKDFA-STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP  144 (227)
T ss_dssp             HEEEECTTSCCSHHH-HHTHHHHHH-HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred             eeEEecccccCCeee-eecchhhcc-ccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHH
Confidence            267778776666432 122222211 122223344569999999999999999999999999999999999999999999


Q ss_pred             HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       506 aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      +|++||..+.|.+|+.+++..+|.+++..+++.+++++++.|++.++||+|.||++||.+...
T Consensus       145 ~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~  207 (227)
T d1sxjc2         145 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT  207 (227)
T ss_dssp             HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTT
T ss_pred             HHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999986543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.3e-34  Score=283.05  Aligned_cols=209  Identities=27%  Similarity=0.446  Sum_probs=179.5

Q ss_pred             ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      .+.++|++||+|++|+||+|++++++.|+.|+..+..||+||+||||+|||++|+++|+++.+...              
T Consensus         9 ~~~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~--------------   74 (231)
T d1iqpa2           9 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW--------------   74 (231)
T ss_dssp             HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred             hhhchHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhccc--------------
Confidence            356889999999999999999999999999999999999999999999999999999999876532              


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD  502 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~  502 (629)
                       ...++++++++.++... +...+.+... ..........||||||+|.+....+++|+.+++++...+.+|++||....
T Consensus        75 -~~~~~e~n~s~~~~~~~-~~~~~~~~~~-~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~  151 (231)
T d1iqpa2          75 -RHNFLELNASDERGINV-IREKVKEFAR-TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSK  151 (231)
T ss_dssp             -HHHEEEEETTCHHHHHT-THHHHHHHHH-SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             -CCCeeEEecCcccchhH-HHHHHHHHHh-hhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhh
Confidence             22378899877665421 1222222211 11122234569999999999999999999999999999999999999999


Q ss_pred             chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       503 I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      ++++|++||..+.|.+++..++..+|.+++.++++.+++++++.|++.++||+|.|+++||.+...
T Consensus       152 i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~  217 (231)
T d1iqpa2         152 IIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL  217 (231)
T ss_dssp             SCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999987653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-33  Score=280.55  Aligned_cols=217  Identities=17%  Similarity=0.204  Sum_probs=182.8

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCC-CCC---cccccccc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNE-KWP---TQVLVPVA  422 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~-~~~---~~v~~~i~  422 (629)
                      +++||||++|+||+|++++++.|+.|+..+..|| +||+||||+|||++|+++++++.+...... ...   .|..+...
T Consensus         2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~   81 (239)
T d1njfa_           2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG   81 (239)
T ss_dssp             HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred             chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence            4699999999999999999999999999999887 899999999999999999999976542211 111   22222222


Q ss_pred             CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      ....++++++....++     +.++++.+.+.... .+..+||||||+|.|+.+++++|+++||+++..+.||++||...
T Consensus        82 ~~~~~~~~~~~~~~~i-----~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~  156 (239)
T d1njfa_          82 RFVDLIEIDAASRTKV-----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  156 (239)
T ss_dssp             CCTTEEEEETTCSSSH-----HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred             CCCeEEEecchhcCCH-----HHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcc
Confidence            3345788888665554     44666666665443 34557999999999999999999999999999999999999999


Q ss_pred             cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742          502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN  569 (629)
Q Consensus       502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~  569 (629)
                      .++++|+|||..+.|.+|+.+++..++..++..+++.+++++++.|+..++||+|+|+++|+.+...+
T Consensus       157 ~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~  224 (239)
T d1njfa_         157 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG  224 (239)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             ccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999998765443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-34  Score=279.72  Aligned_cols=215  Identities=21%  Similarity=0.361  Sum_probs=178.3

Q ss_pred             hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742          347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      ||++||+|++|+||+|++++++.|+.|+..+..+++||+||||||||++|+++|+++.+...              ....
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~--------------~~~~   66 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL--------------MKSR   66 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH--------------HTTS
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcc--------------cccc
Confidence            69999999999999999999999999999999999999999999999999999999865432              1122


Q ss_pred             eEEEecccchhhHHHHHHHHHHHHHHhcc---------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          427 HVELNVNLQANAKYALMGLVKEIRDNLAI---------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~lrei~~~~~~---------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      .++++++...+.. .....+++.......         ......+||||||+|.+....++.|+.+++.+...+.||+++
T Consensus        67 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~  145 (237)
T d1sxjd2          67 ILELNASDERGIS-IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC  145 (237)
T ss_dssp             EEEECSSSCCCHH-HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             hhheeccccccch-HHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccc
Confidence            5677776555543 222233333221111         112234599999999999999999999999999999999999


Q ss_pred             cCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC
Q 036742          498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ  576 (629)
Q Consensus       498 N~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~  576 (629)
                      +....++++|++||..+.|.+|+.+++..+|..++.++++.+++++++.|++.++||+|+|+++||.++..+.....++
T Consensus       146 ~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~~~~  224 (237)
T d1sxjd2         146 NYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGK  224 (237)
T ss_dssp             SCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCC
T ss_pred             cccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765443333333

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.5e-32  Score=270.17  Aligned_cols=223  Identities=27%  Similarity=0.461  Sum_probs=169.3

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCC---------CCccc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVDGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEK---------WPTQV  417 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~---------~~~~v  417 (629)
                      |++||+|++|+||+|++++++.|+.++..+. .+++||+||||||||++|+++|+++.+.......         .....
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL   80 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence            9999999999999999999999999997664 6789999999999999999999998654432210         01112


Q ss_pred             cccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhccC-------cCCCCeEEEEEccchhhHHHHHHHHHHHhccCC
Q 036742          418 LVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAIT-------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTD  489 (629)
Q Consensus       418 ~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~-------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~  489 (629)
                      .+......+.+.+....... ......+.++.........       .....++|||||+|.|....++.|+++++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~  160 (252)
T d1sxje2          81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  160 (252)
T ss_dssp             --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence            22333344455554432211 1112222222222111110       012235999999999999999999999999999


Q ss_pred             CcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742          490 SCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKAIMALEACKAL  568 (629)
Q Consensus       490 ~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is-~e~L~~Ia~~s~GDiR~AInlLq~~~~~  568 (629)
                      ++.||++||....++++|++||..|+|++|+.+++.++|..++.++++.+. +++++.|+..++||+|+||++||.+...
T Consensus       161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~  240 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN  240 (252)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred             cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998774 6788999999999999999999988876


Q ss_pred             CC
Q 036742          569 NY  570 (629)
Q Consensus       569 ~~  570 (629)
                      +.
T Consensus       241 ~~  242 (252)
T d1sxje2         241 NE  242 (252)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-29  Score=251.74  Aligned_cols=204  Identities=21%  Similarity=0.267  Sum_probs=158.9

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHHHc-----------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCC
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------------GNCPHILIKGQSGSGKRALAMALLHEIYGDAC  408 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~  408 (629)
                      .+|++||+|++|+||+|++++++.|++||..                 +..+++|||||||||||++|+++|+++.+.  
T Consensus         2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~--   79 (253)
T d1sxja2           2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD--   79 (253)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE--
T ss_pred             CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh--
Confidence            5899999999999999999999999999852                 335689999999999999999999997432  


Q ss_pred             CCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhc-----------cCcCCCCeEEEEEccchhhHHHH
Q 036742          409 WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-----------ITPEVSNAMIVIYEVDKAAEHIQ  477 (629)
Q Consensus       409 ~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~-----------~~~~~~~kVIIIDEID~Ls~~~q  477 (629)
                                        +++++++...+.. .+...++.......           ........||++||+|.+....+
T Consensus        80 ------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~  140 (253)
T d1sxja2          80 ------------------ILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR  140 (253)
T ss_dssp             ------------------EEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST
T ss_pred             ------------------hhccccccchhhH-HHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh
Confidence                              5677776554431 11111121111110           00112344999999999987777


Q ss_pred             HHHHHHHhcc-CCCcEEEEEecCCcc-chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742          478 YLIKWIMDGY-TDSCKLILCCEDDVD-IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL  555 (629)
Q Consensus       478 ~aLlrilEe~-~~~~~~ILitN~~~~-I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi  555 (629)
                      ..+..+++.. ....++|++|+.... .+++|++||..+.|.+|+.+++..+|..+|.++++.+++++++.|++.++||+
T Consensus       141 ~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDi  220 (253)
T d1sxja2         141 GGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI  220 (253)
T ss_dssp             THHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCH
T ss_pred             hhhHHHhhhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcH
Confidence            7666666532 345678888886554 67789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 036742          556 RKAIMALEACKALNY  570 (629)
Q Consensus       556 R~AInlLq~~~~~~~  570 (629)
                      |+||+.||++.....
T Consensus       221 R~ai~~L~~~~~~~~  235 (253)
T d1sxja2         221 RQVINLLSTISTTTK  235 (253)
T ss_dssp             HHHHHHHTHHHHHSS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999876543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4.6e-26  Score=225.33  Aligned_cols=190  Identities=16%  Similarity=0.164  Sum_probs=152.4

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVVD-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      .||++|+||+||+++++.|+.|+..     ...+|+|||||||||||++|+++|+++...                    
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~--------------------   62 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--------------------   62 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCC--------------------
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--------------------
Confidence            3899999999999999999999862     346799999999999999999999997433                    


Q ss_pred             eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc------------------C
Q 036742          427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY------------------T  488 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~------------------~  488 (629)
                      +..++++......     .........    ...+.|++|||+|.+....+..++..++.+                  .
T Consensus        63 ~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~  133 (239)
T d1ixsb2          63 LRVTSGPAIEKPG-----DLAAILANS----LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL  133 (239)
T ss_dssp             EEEEETTTCCSHH-----HHHHHHHTT----CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEEC
T ss_pred             eEeccCCccccch-----hhHHHHHhh----ccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCC
Confidence            3555554333221     111112211    123459999999999999999999988743                  2


Q ss_pred             CCcEEEEEecCCccc-hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742          489 DSCKLILCCEDDVDI-IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA  567 (629)
Q Consensus       489 ~~~~~ILitN~~~~I-~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~  567 (629)
                      ..+.+|++|+..... .+.++++|..+.|..++.+++..++..+|.++++.++++.++.|+..++||+|.|+++|+.+..
T Consensus       134 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~  213 (239)
T d1ixsb2         134 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRD  213 (239)
T ss_dssp             CCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            345688888887774 5677788999999999999999999999999999999999999999999999999999998765


Q ss_pred             cCC
Q 036742          568 LNY  570 (629)
Q Consensus       568 ~~~  570 (629)
                      .+.
T Consensus       214 ~a~  216 (239)
T d1ixsb2         214 FAQ  216 (239)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=3.3e-26  Score=225.98  Aligned_cols=185  Identities=17%  Similarity=0.239  Sum_probs=154.0

Q ss_pred             cCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742          352 HQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH  426 (629)
Q Consensus       352 yrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~  426 (629)
                      .||++|+||+||+++++.|+.|+.     ....+|+|||||||||||++|+++|+++.+.                    
T Consensus         3 ~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~--------------------   62 (238)
T d1in4a2           3 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--------------------   62 (238)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--------------------
T ss_pred             CCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCC--------------------
Confidence            589999999999999999999985     3346799999999999999999999998443                    


Q ss_pred             eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------------------
Q 036742          427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------------  488 (629)
Q Consensus       427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------------  488 (629)
                      ++.+++.......     .+..+....     ..+.+++|||+|.+....++.++..++.+.                  
T Consensus        63 ~~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (238)
T d1in4a2          63 IHVTSGPVLVKQG-----DMAAILTSL-----ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI  132 (238)
T ss_dssp             EEEEETTTCCSHH-----HHHHHHHHC-----CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred             cccccCcccccHH-----HHHHHHHhh-----ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCC
Confidence            4566665444321     122222221     234699999999999999999988887543                  


Q ss_pred             CCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          489 DSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       489 ~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                      ..+.||++||....+++++++||. .+.|.+++.+++..++..++..+++.++++++..|++.++||+|.|+++|+.+.
T Consensus       133 ~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~~~  211 (238)
T d1in4a2         133 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVR  211 (238)
T ss_dssp             CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            356789999999999999999986 579999999999999999999999999999999999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.1e-26  Score=222.17  Aligned_cols=195  Identities=12%  Similarity=0.142  Sum_probs=155.9

Q ss_pred             ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCC-CCCcccc---ccccCCcceEEEecccch
Q 036742          362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNE-KWPTQVL---VPVASSAHHVELNVNLQA  436 (629)
Q Consensus       362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~-~~~~~v~---~~i~sS~~vleInas~~~  436 (629)
                      +++.+.+.|.+.+..++.|| +||+||+|+|||++|+++|+.+++...... .+..|.+   +.......+..+......
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK   85 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcc
Confidence            57888999999999999998 899999999999999999999976643221 1122222   223344556666553221


Q ss_pred             hhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEee
Q 036742          437 NAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK  515 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~  515 (629)
                      ..  +..+.++++...+..... +..+||||||+|.|+.+++++|+++||+++.++.|||+|++...++++|+|||+.+.
T Consensus        86 ~~--i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~  163 (207)
T d1a5ta2          86 NT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY  163 (207)
T ss_dssp             SS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred             cc--cccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEe
Confidence            10  113556777766655443 456799999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742          516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE  563 (629)
Q Consensus       516 F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq  563 (629)
                      |.+++.+++..+|..     .+.++++.+..++..++||+|.||++||
T Consensus       164 ~~~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le  206 (207)
T d1a5ta2         164 LAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ  206 (207)
T ss_dssp             CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             cCCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence            999999999998853     4567899999999999999999999886

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.2e-20  Score=189.46  Aligned_cols=183  Identities=16%  Similarity=0.166  Sum_probs=128.9

Q ss_pred             CCCCCcccccHHHHHHHHHHHH----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVV----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      +.+|+||+|.+++++.|++++.          .|  ...++||+||||||||++|++||+++ +..              
T Consensus         5 ~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~-~~~--------------   69 (247)
T d1ixza_           5 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-RVP--------------   69 (247)
T ss_dssp             SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-TCC--------------
T ss_pred             CCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHc-CCC--------------
Confidence            4588999999999998887662          12  23479999999999999999999997 332              


Q ss_pred             cCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHHhc
Q 036742          422 ASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIMDG  486 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlrilEe  486 (629)
                           +++++++...... ......++.+   |.......++||||||+|.+..              ...+.|+..|+.
T Consensus        70 -----~~~i~~~~l~~~~~g~~~~~l~~~---f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~  141 (247)
T d1ixza_          70 -----FITASGSDFVEMFVGVGAARVRDL---FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG  141 (247)
T ss_dssp             -----EEEEEHHHHHHSCTTHHHHHHHHH---HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred             -----EEEEEhHHhhhccccHHHHHHHHH---HHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhC
Confidence                 5777774321100 0011223332   3223344567999999998831              245567777775


Q ss_pred             cC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHH
Q 036742          487 YT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRK  557 (629)
Q Consensus       487 ~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~  557 (629)
                      +.  ..+.||++||.++.++++|++  |+ ..|+|++|+.++..++++..+.+..+. .+..++.|++.+.|    |++.
T Consensus       142 ~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~  220 (247)
T d1ixza_         142 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLEN  220 (247)
T ss_dssp             CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHHHHHH
Confidence            44  345667789999999999985  77 589999999999999999888765543 33457889988876    5555


Q ss_pred             HHH
Q 036742          558 AIM  560 (629)
Q Consensus       558 AIn  560 (629)
                      +++
T Consensus       221 lv~  223 (247)
T d1ixza_         221 LLN  223 (247)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.2e-20  Score=187.31  Aligned_cols=173  Identities=17%  Similarity=0.165  Sum_probs=124.1

Q ss_pred             CCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          354 PSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      ..+|+||+|.+++++.|.+++.            .....++|||||||||||++|++||+++ +..              
T Consensus         8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~-~~~--------------   72 (256)
T d1lv7a_           8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVP--------------   72 (256)
T ss_dssp             CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-TCC--------------
T ss_pred             CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHc-CCC--------------
Confidence            4678999999999999987663            1123479999999999999999999997 333              


Q ss_pred             cCCcceEEEecccch----hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHH
Q 036742          422 ASSAHHVELNVNLQA----NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWI  483 (629)
Q Consensus       422 ~sS~~vleInas~~~----~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlri  483 (629)
                           ++.++++...    +..   ...++.+.+.   .....++||||||+|.+..              ...+.|+..
T Consensus        73 -----~~~i~~~~l~~~~~g~~---~~~l~~~f~~---A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~  141 (256)
T d1lv7a_          73 -----FFTISGSDFVEMFVGVG---ASRVRDMFEQ---AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE  141 (256)
T ss_dssp             -----EEEECSCSSTTSCCCCC---HHHHHHHHHH---HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH
T ss_pred             -----EEEEEhHHhhhcchhHH---HHHHHHHHHH---HHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHH
Confidence                 4566653211    110   1122222222   2234567999999998721              244667777


Q ss_pred             Hhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          484 MDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       484 lEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      ++..  ...+.+|++||.++.|++++++  |+ ..|.|++|+.++..++++..+.+..+. .+..+..|++.+.|
T Consensus       142 ~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G  215 (256)
T d1lv7a_         142 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPG  215 (256)
T ss_dssp             HHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTT
T ss_pred             hhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCC
Confidence            7744  3456778899999999999986  77 689999999999999999888766554 34457888888766

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=4.5e-20  Score=179.33  Aligned_cols=137  Identities=14%  Similarity=0.211  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc-chhhHHHHHH
Q 036742          366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL-QANAKYALMG  444 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~-~~~~k~~l~~  444 (629)
                      .++.|+.+++.+..+++||+||+|+|||++|..+++++.....              .+..++++.+.. ..++     +
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------------~h~D~~~i~~~~~~I~I-----d   62 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP--------------KASDVLEIDPEGENIGI-----D   62 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------------CTTTEEEECCSSSCBCH-----H
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccc--------------CCCCEEEEeCCcCCCCH-----H
Confidence            4678999999999999999999999999999999998754432              234588888743 2233     5


Q ss_pred             HHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCH
Q 036742          445 LVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT  521 (629)
Q Consensus       445 ~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~  521 (629)
                      .++++...+...+. +..+|+||||+|.|+..++++|+++||+++.++.|||+|+.+..++++|+|||+.+.|++|..
T Consensus        63 ~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~  140 (198)
T d2gnoa2          63 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE  140 (198)
T ss_dssp             HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred             HHHHHHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCchH
Confidence            67777776665543 456799999999999999999999999999999999999999999999999999999987653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=5.3e-18  Score=166.81  Aligned_cols=221  Identities=16%  Similarity=0.147  Sum_probs=147.6

Q ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHc------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          348 WADKHQPSSLNGFICHRHEAQLLKELVVD------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      +...|.|   +.++|++..++.|.++|..      +..+++||+||||||||++|++|++.+.+...             
T Consensus         9 l~~~y~p---~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~-------------   72 (276)
T d1fnna2           9 FSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------------   72 (276)
T ss_dssp             GSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------------
T ss_pred             CCCCCCC---CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccC-------------
Confidence            4578888   4568999888888877752      33568999999999999999999999854332             


Q ss_pred             cCCcceEEEecccchhhHHHHHHHH------------------HHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHH
Q 036742          422 ASSAHHVELNVNLQANAKYALMGLV------------------KEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWI  483 (629)
Q Consensus       422 ~sS~~vleInas~~~~~k~~l~~~l------------------rei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlri  483 (629)
                         ..++.+++.........+....                  ..+.....  ......++++|++|.+.......+..+
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~  147 (276)
T d1fnna2          73 ---ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR--ERDLYMFLVLDDAFNLAPDILSTFIRL  147 (276)
T ss_dssp             ---CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--HTTCCEEEEEETGGGSCHHHHHHHHHH
T ss_pred             ---CcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHh--hcccccccchhHHHHhhhhhhhhHHHH
Confidence               1144444432221111111111                  11111110  011234889999999977766666665


Q ss_pred             Hhc----cCCCcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHc-
Q 036742          484 MDG----YTDSCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIATKA-  551 (629)
Q Consensus       484 lEe----~~~~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~~s-  551 (629)
                      +..    ....+.+|++++...   .+.+.+.+|+  ..+.|.+++.+++.++|..++..  ....+++++++.|++.+ 
T Consensus       148 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~  227 (276)
T d1fnna2         148 GQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG  227 (276)
T ss_dssp             TTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred             HhccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhh
Confidence            542    235566788888754   4678888887  56899999999999999987765  33457899999998864 


Q ss_pred             --------cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          552 --------KQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       552 --------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                              .||+|.++++|+.+...+...........+++++..++
T Consensus       228 ~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~~  273 (276)
T d1fnna2         228 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV  273 (276)
T ss_dssp             BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred             hhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence                    79999999999987655443344445556666555443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=8.9e-19  Score=176.32  Aligned_cols=178  Identities=19%  Similarity=0.209  Sum_probs=124.8

Q ss_pred             CCCcccccHHHHHHHHHHHH-----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742          356 SLNGFICHRHEAQLLKELVV-----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA  422 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~-----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~  422 (629)
                      +|+||+|.+.+++.|++++.           .|.  ..++|||||||||||++|+++|.++ +..               
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~-~~~---------------   65 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF---------------   65 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT-TCE---------------
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHh-CCe---------------
Confidence            67999999999999998763           122  3379999999999999999999996 433               


Q ss_pred             CCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhc-
Q 036742          423 SSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDG-  486 (629)
Q Consensus       423 sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe-  486 (629)
                          ++.++++..    .+..   ...++.   .|......+++||||||+|.+..           .....++..++. 
T Consensus        66 ----~~~i~~~~l~~~~~g~~---~~~l~~---~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~  135 (258)
T d1e32a2          66 ----FFLINGPEIMSKLAGES---ESNLRK---AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL  135 (258)
T ss_dssp             ----EEEECHHHHTTSCTTHH---HHHHHH---HHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTC
T ss_pred             ----EEEEEchhhcccccccH---HHHHHH---HHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccc
Confidence                466666321    1111   112222   22223334567999999999932           233444444442 


Q ss_pred             -cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHHH
Q 036742          487 -YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRKA  558 (629)
Q Consensus       487 -~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~A  558 (629)
                       ....+.+|++||.++.+++++++  |+ ..|+|+.|+.++...+|+..+.+..+. ++..+..|++.+.|    |++.+
T Consensus       136 ~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adl~~l  214 (258)
T d1e32a2         136 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL  214 (258)
T ss_dssp             CCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHHHHHHH
T ss_pred             cccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCCHHHHHHH
Confidence             33556788899999999999998  78 679999999999999999887654332 22347889999877    55544


Q ss_pred             HH
Q 036742          559 IM  560 (629)
Q Consensus       559 In  560 (629)
                      ++
T Consensus       215 v~  216 (258)
T d1e32a2         215 CS  216 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.76  E-value=5.5e-18  Score=167.67  Aligned_cols=228  Identities=16%  Similarity=0.133  Sum_probs=143.4

Q ss_pred             chhhhccCCCCCCcccccHHHHHHHHHHH----HcCCCC-----eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742          346 PFWADKHQPSSLNGFICHRHEAQLLKELV----VDGNCP-----HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ  416 (629)
Q Consensus       346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L----~~g~~p-----~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~  416 (629)
                      .+|..+|+|   +.|.|.+..++.|..++    ..|..+     +++|+||||||||++++++++++.....        
T Consensus         7 ~~l~~~~~P---~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~--------   75 (287)
T d1w5sa2           7 RVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA--------   75 (287)
T ss_dssp             GGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH--------
T ss_pred             hhcCCccCC---CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcc--------
Confidence            457789999   55667766666665544    344433     3678999999999999999999743210        


Q ss_pred             ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhc----------------cCcCCCCeEEEEEccchhh------H
Q 036742          417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA----------------ITPEVSNAMIVIYEVDKAA------E  474 (629)
Q Consensus       417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~----------------~~~~~~~kVIIIDEID~Ls------~  474 (629)
                         .......++++++.........+............                ........++++||+|.+.      .
T Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~  152 (287)
T d1w5sa2          76 ---KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA  152 (287)
T ss_dssp             ---HTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCH
T ss_pred             ---cccCCceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccch
Confidence               00111235566654333322222222111100000                0001123488999999983      3


Q ss_pred             HHHHHHHHHHhccC-----CCcEEEEEecCCcc------chHHHhhc-ceEeeccCCCHHHHHHHHHHHHHhc--CCCCC
Q 036742          475 HIQYLIKWIMDGYT-----DSCKLILCCEDDVD------IIESVKTH-CKVIKVDPPVTHEIMEVLIQIARKE--DFDLS  540 (629)
Q Consensus       475 ~~q~aLlrilEe~~-----~~~~~ILitN~~~~------I~~aLrSR-~~~I~F~ppt~eei~~iL~~i~~ke--gl~is  540 (629)
                      +....|..+++...     ....+|++++....      ..+.+.+| +..+.|.+|+.+++.+++..++...  ...++
T Consensus       153 ~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~  232 (287)
T d1w5sa2         153 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE  232 (287)
T ss_dssp             HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC
T ss_pred             hHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCC
Confidence            45566666665432     45567888876653      23566666 5789999999999999999988653  33578


Q ss_pred             HHHHHHHHHHc------cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Q 036742          541 MTFAAKIATKA------KQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI  587 (629)
Q Consensus       541 ~e~L~~Ia~~s------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~  587 (629)
                      ++++..|++.+      .||+|+|+++|+.+...+...........++++++.
T Consensus       233 ~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~  285 (287)
T d1w5sa2         233 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS  285 (287)
T ss_dssp             HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            99999999876      699999999998766544433344555566655543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.70  E-value=5.7e-16  Score=151.57  Aligned_cols=187  Identities=17%  Similarity=0.229  Sum_probs=132.3

Q ss_pred             CCCccc-c--cHHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742          356 SLNGFI-C--HRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL  430 (629)
Q Consensus       356 tfddIi-G--~e~~~~~Lk~~L~~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI  430 (629)
                      +|++++ |  ++.+...++++++...  .+.++||||+|||||+|++|+++++.....                 .++++
T Consensus         8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~-----------------~~~~~   70 (213)
T d1l8qa2           8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY-----------------RVIYS   70 (213)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC-----------------CEEEE
T ss_pred             ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCcc-----------------ceEEe
Confidence            889975 4  7778888999887432  345999999999999999999999754322                 25666


Q ss_pred             ecccchh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhc-cCCCcEEEEEecCCcc---
Q 036742          431 NVNLQAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDG-YTDSCKLILCCEDDVD---  502 (629)
Q Consensus       431 nas~~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe-~~~~~~~ILitN~~~~---  502 (629)
                      ++.....  ..........++...+.     ...+|+|||+|.+.  ...+..|..+++. ...+..+|++++.+..   
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~  145 (213)
T d1l8qa2          71 SADDFAQAMVEHLKKGTINEFRNMYK-----SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD  145 (213)
T ss_dssp             EHHHHHHHHHHHHHHTCHHHHHHHHH-----TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred             chHHHHHHHHHHHHccchhhHHHHHh-----hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhcc
Confidence            6532111  00011111112222221     12499999999994  4556666666653 3467788999887543   


Q ss_pred             -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742          503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK  566 (629)
Q Consensus       503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~  566 (629)
                       +.+.|+||+   .++.+. |+.++.+++|++.+...|+.++++++++|++.+ .++|....+|..++
T Consensus       146 ~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~  211 (213)
T d1l8qa2         146 GVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIK  211 (213)
T ss_dssp             TSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHH
T ss_pred             ccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhh
Confidence             578999997   567775 678889999999999999999999999999997 57887777776554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.6e-18  Score=171.21  Aligned_cols=172  Identities=19%  Similarity=0.159  Sum_probs=114.4

Q ss_pred             CCCCcccccHHHHHHHHHHHH-----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742          355 SSLNGFICHRHEAQLLKELVV-----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV  421 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~-----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i  421 (629)
                      .+|+||+|.+++++.|.+++.           .|.  ..+||||||||||||++|+++|.++ +..              
T Consensus         4 ~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~-~~~--------------   68 (265)
T d1r7ra3           4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN--------------   68 (265)
T ss_dssp             CSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT-TCE--------------
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHh-CCc--------------
Confidence            389999999998888777653           122  2389999999999999999999997 433              


Q ss_pred             cCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHH
Q 036742          422 ASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWI  483 (629)
Q Consensus       422 ~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlri  483 (629)
                           ++.+++...    .+.   ....++.+...   .....++||+|||+|.+..              ...+.|+..
T Consensus        69 -----~~~~~~~~l~~~~~~~---~~~~l~~~f~~---A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~  137 (265)
T d1r7ra3          69 -----FISIKGPELLTMWFGE---SEANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE  137 (265)
T ss_dssp             -----EEEECHHHHHTSCTTT---HHHHHHHHHHH---HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHT
T ss_pred             -----EEEEEHHHhhhccccc---hHHHHHHHHHH---HHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHH
Confidence                 456665321    111   11222322222   2223457999999998832              133555555


Q ss_pred             Hhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742          484 MDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ  553 (629)
Q Consensus       484 lEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G  553 (629)
                      ++..  ...+.||+|||.++.|+++|++  |+ ..|+|++|+.++..++|+..+.+..+. .+..+..|+..+.|
T Consensus       138 l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~g  211 (265)
T d1r7ra3         138 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG  211 (265)
T ss_dssp             CC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHHHHHHCS
T ss_pred             hhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHHHHHhcCCC
Confidence            5533  2346788899999999999986  67 479999999999999998765542221 22246778777765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-14  Score=144.53  Aligned_cols=198  Identities=16%  Similarity=0.186  Sum_probs=146.1

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      +-..++-++|.++.++.|.+.|......++||.||||+|||++++.+|..+.....+          .......+++++.
T Consensus        13 ~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp----------~~l~~~~i~~l~~   82 (268)
T d1r6bx2          13 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP----------EVMADCTIYSLDI   82 (268)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSC----------GGGTTCEEEECCC
T ss_pred             HcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcc----------cccccceeEEeee
Confidence            344668899999999999999988888899999999999999999999987543321          1122334666654


Q ss_pred             c------cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCcEEEEEe
Q 036742          433 N------LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       433 s------~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      .      ..++   ..++.++.+......   ..+.||||||++.|.         .++.+.|+..+.  .....+|.+|
T Consensus        83 ~~liag~~~~g---~~e~r~~~i~~~~~~---~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~--rg~i~vIgat  154 (268)
T d1r6bx2          83 GSLLAGTKYRG---DFEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST  154 (268)
T ss_dssp             C---CCCCCSS---CHHHHHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred             chHhccCccch---hHHHHHHHHHHHhhc---cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh--CCCCeEEEeC
Confidence            2      2233   234555555555432   234599999999992         245566666665  4677888888


Q ss_pred             cCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHcc------CCHHHHHHHH
Q 036742          498 EDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIA----RKEDFDLSMTFAAKIATKAK------QNLRKAIMAL  562 (629)
Q Consensus       498 N~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~----~kegl~is~e~L~~Ia~~s~------GDiR~AInlL  562 (629)
                      +..+     .-+++|.+||.+|.+.+|+.++...+|..+.    ...++.++++++..+++++.      .-+.+||.+|
T Consensus       155 T~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdll  234 (268)
T d1r6bx2         155 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI  234 (268)
T ss_dssp             CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHH
T ss_pred             CHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            6532     2478999999999999999999999887653    45789999999999998874      4567999999


Q ss_pred             HHHHhc
Q 036742          563 EACKAL  568 (629)
Q Consensus       563 q~~~~~  568 (629)
                      +.+++.
T Consensus       235 Dea~a~  240 (268)
T d1r6bx2         235 DEAGAR  240 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=8.2e-15  Score=150.76  Aligned_cols=152  Identities=15%  Similarity=0.214  Sum_probs=98.9

Q ss_pred             CcccccHHHHHHHHHHHH--------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742          358 NGFICHRHEAQLLKELVV--------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS  423 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~--------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s  423 (629)
                      ..|+||+++++.|..++.              .....++||+||||||||.+|+++|+++...                 
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~-----------------   76 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP-----------------   76 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC-----------------
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccc-----------------
Confidence            457999999999988773              1134589999999999999999999997433                 


Q ss_pred             CcceEEEecccch---hhHHHHHHHHHHHHHHhccCc--CCCCeEEEEEccchhhH------------HHHHHHHHHHhc
Q 036742          424 SAHHVELNVNLQA---NAKYALMGLVKEIRDNLAITP--EVSNAMIVIYEVDKAAE------------HIQYLIKWIMDG  486 (629)
Q Consensus       424 S~~vleInas~~~---~~k~~l~~~lrei~~~~~~~~--~~~~kVIIIDEID~Ls~------------~~q~aLlrilEe  486 (629)
                         ++.++++...   .........++.+........  ...++||||||||.+.+            +.++.|+..++.
T Consensus        77 ---~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg  153 (309)
T d1ofha_          77 ---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG  153 (309)
T ss_dssp             ---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred             ---hhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcC
Confidence               3444442210   000011122233222211110  11246999999999842            356778888874


Q ss_pred             c----------CCCcEEEEE----ecCCccchHHHhhcc-eEeeccCCCHHHHHHHHH
Q 036742          487 Y----------TDSCKLILC----CEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLI  529 (629)
Q Consensus       487 ~----------~~~~~~ILi----tN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~  529 (629)
                      .          ..++.||++    .+.+..+.++++.|+ ..+.|.+|+..++.++|.
T Consensus       154 ~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~  211 (309)
T d1ofha_         154 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT  211 (309)
T ss_dssp             CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred             CEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence            2          123344544    245667899999999 568899999999988874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=1.2e-14  Score=144.93  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=102.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc-hhh-HHHHHHHHHHHHHHhccCc
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ-ANA-KYALMGLVKEIRDNLAITP  457 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~-~~~-k~~l~~~lrei~~~~~~~~  457 (629)
                      .+||||||||||||++|++||+++. ..                   ++++++.+. .+. .......++.+..   ...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~-~~-------------------~~~i~~~~~~~g~~~~~~~~~i~~if~---~A~   97 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN-FP-------------------FIKICSPDKMIGFSETAKCQAMKKIFD---DAY   97 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-CS-------------------EEEEECGGGCTTCCHHHHHHHHHHHHH---HHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc-cc-------------------ccccccccccccccccchhhhhhhhhh---hhh
Confidence            3799999999999999999999973 32                   566765321 111 0011122333322   222


Q ss_pred             CCCCeEEEEEccchhh----------HHHHHHHHHHHhccCC---CcEEEEEecCCccchHH-Hhhcce-EeeccCCC-H
Q 036742          458 EVSNAMIVIYEVDKAA----------EHIQYLIKWIMDGYTD---SCKLILCCEDDVDIIES-VKTHCK-VIKVDPPV-T  521 (629)
Q Consensus       458 ~~~~kVIIIDEID~Ls----------~~~q~aLlrilEe~~~---~~~~ILitN~~~~I~~a-LrSR~~-~I~F~ppt-~  521 (629)
                      ...++||||||||.+.          ....+.|+..++....   .+.||+|||.++.++++ +++||. .+.|+.+. .
T Consensus        98 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r  177 (246)
T d1d2na_          98 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG  177 (246)
T ss_dssp             TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred             hcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhH
Confidence            3345799999999872          2445677777775432   34577789998888765 677774 57775554 3


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHHHH
Q 036742          522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-----NLRKAIMALEACK  566 (629)
Q Consensus       522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-----DiR~AInlLq~~~  566 (629)
                      +++..+|...     ..+++..+..+++.+.|     .++.+++.++.+.
T Consensus       178 ~~il~~l~~~-----~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie~a~  222 (246)
T d1d2na_         178 EQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL  222 (246)
T ss_dssp             HHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred             HHHHHHHHhc-----cCCChHHHHHHHHHcCCCccchhHHHHHHHHHHHH
Confidence            4555555432     24567778888888776     5888888877653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=4.1e-13  Score=142.17  Aligned_cols=202  Identities=16%  Similarity=0.160  Sum_probs=137.4

Q ss_pred             CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742          353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      +--.++-++|.+..++.+.++|......++||.||||+|||++++.+|..+.....+.          ......++.++.
T Consensus        17 ~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~----------~l~~~~i~~ld~   86 (387)
T d1qvra2          17 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE----------GLKGKRIVSLQM   86 (387)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT----------TSTTCEEEEECC
T ss_pred             HcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCH----------HHcCceEEEeeH
Confidence            3456788999999999999999887778899999999999999999999875443311          123334666665


Q ss_pred             cc-chh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------HHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742          433 NL-QAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------EHIQYLIKWIMDGYTDSCKLILCCEDDV  501 (629)
Q Consensus       433 s~-~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------~~~q~aLlrilEe~~~~~~~ILitN~~~  501 (629)
                      .. .-|  .....++.+..++.....  ...+.||||||++.+.        .++.+.|...+..  ....+|.+|+...
T Consensus        87 ~~l~ag~~~~g~~e~r~~~i~~~~~~--~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r--g~~~~I~~tT~~e  162 (387)
T d1qvra2          87 GSLLAGAKYRGEFEERLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDE  162 (387)
T ss_dssp             -----------CHHHHHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHH
T ss_pred             hhhhcccCcchhHHHHHHHHHHHhcc--CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC--CCcceeeecCHHH
Confidence            31 111  111233444444443221  1123589999999993        2456778888874  6678888886422


Q ss_pred             c----chHHHhhcceEeeccCCCHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHcc------CCHHHHHHHHHHHHh
Q 036742          502 D----IIESVKTHCKVIKVDPPVTHEIMEVLIQIA----RKEDFDLSMTFAAKIATKAK------QNLRKAIMALEACKA  567 (629)
Q Consensus       502 ~----I~~aLrSR~~~I~F~ppt~eei~~iL~~i~----~kegl~is~e~L~~Ia~~s~------GDiR~AInlLq~~~~  567 (629)
                      .    -+++|.+||..|.+.+|+.++...+|..+.    ...++.++++++..++.++.      .-+.+||.+|+.+++
T Consensus       163 y~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a  242 (387)
T d1qvra2         163 YREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA  242 (387)
T ss_dssp             HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHH
Confidence            1    378999999999999999999999888764    35689999999999999874      467899999997655


Q ss_pred             c
Q 036742          568 L  568 (629)
Q Consensus       568 ~  568 (629)
                      .
T Consensus       243 ~  243 (387)
T d1qvra2         243 R  243 (387)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.1e-12  Score=135.29  Aligned_cols=171  Identities=15%  Similarity=0.232  Sum_probs=116.6

Q ss_pred             CcccccHHHHHHHHHHHHc-------CCCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVVD-------GNCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~-------g~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||+++++.+.+.+..       ...|  .+||+||+|+|||.+|+.||+.+++...                 .++
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~-----------------~~~   85 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE-----------------AMI   85 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGG-----------------GEE
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCc-----------------ceE
Confidence            6689999999998887751       1122  5789999999999999999999876532                 144


Q ss_pred             EEecccchh---hH-----------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742          429 ELNVNLQAN---AK-----------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------  488 (629)
Q Consensus       429 eInas~~~~---~k-----------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------  488 (629)
                      .++.+....   ..           +.....+.+....      ....||+|||||.+.++.++.|+.++++..      
T Consensus        86 ~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~------~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~g  159 (315)
T d1qvra3          86 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHG  159 (315)
T ss_dssp             EECTTTCCSSGGGGGC--------------CHHHHHHH------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSS
T ss_pred             EEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHh------CCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCC
Confidence            444421100   00           0001112222221      224699999999999999999999998531      


Q ss_pred             -----CCcEEEEEecCC--------------------------ccchHHHhhcce-EeeccCCCHHHHHHHHHHHHH---
Q 036742          489 -----DSCKLILCCEDD--------------------------VDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIAR---  533 (629)
Q Consensus       489 -----~~~~~ILitN~~--------------------------~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~---  533 (629)
                           .++.||+|||--                          ..+.+.+..|+. ++.|.+++.+++.+++...+.   
T Consensus       160 r~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~  239 (315)
T d1qvra3         160 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR  239 (315)
T ss_dssp             CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHH
Confidence                 456688888842                          225677888885 668999999999888765432   


Q ss_pred             ----hcC--CCCCHHHHHHHHHHc
Q 036742          534 ----KED--FDLSMTFAAKIATKA  551 (629)
Q Consensus       534 ----keg--l~is~e~L~~Ia~~s  551 (629)
                          ..+  +.++++++++|++.+
T Consensus       240 ~rl~~~~i~l~i~~~~~~~L~~~~  263 (315)
T d1qvra3         240 ARLAEKRISLELTEAAKDFLAERG  263 (315)
T ss_dssp             HHHHTTTCEEEECHHHHHHHHHHH
T ss_pred             HHHHhccccccccHHHHHHHHHhC
Confidence                223  356899999998874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.2e-12  Score=131.62  Aligned_cols=168  Identities=16%  Similarity=0.228  Sum_probs=113.9

Q ss_pred             CcccccHHHHHHHHHHHH---cC----C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742          358 NGFICHRHEAQLLKELVV---DG----N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV  428 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~---~g----~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl  428 (629)
                      ..|+||+++++.|...+.   .|    .  ...+||+||+|||||.||++||+.+...                    ++
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~--------------------~i   81 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE--------------------LL   81 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE--------------------EE
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCC--------------------ee
Confidence            789999999999988884   11    1  1258999999999999999999987422                    23


Q ss_pred             EEeccc--------------chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-------
Q 036742          429 ELNVNL--------------QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-------  487 (629)
Q Consensus       429 eInas~--------------~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-------  487 (629)
                      .++++.              ..+..+.....+.+...      .....||++||+|.+.++.++.|+.+++..       
T Consensus        82 ~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~------~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~G  155 (315)
T d1r6bx3          82 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG  155 (315)
T ss_dssp             EEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred             EeccccccchhhhhhhcccCCCccccccCChhhHHHH------hCccchhhhcccccccchHhhhhHHhhccceecCCCC
Confidence            333211              00111011111222221      123469999999999999999999999853       


Q ss_pred             ----CCCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHH----
Q 036742          488 ----TDSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR----  533 (629)
Q Consensus       488 ----~~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~----  533 (629)
                          -.++.+|+|+|--.                         .+.+.+..|+ .++.|.+++.+++..++...+.    
T Consensus       156 r~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~  235 (315)
T d1r6bx3         156 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV  235 (315)
T ss_dssp             EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHH
Confidence                25567888888421                         1456777888 4789999999998887655432    


Q ss_pred             ---hcC--CCCCHHHHHHHHHHc
Q 036742          534 ---KED--FDLSMTFAAKIATKA  551 (629)
Q Consensus       534 ---keg--l~is~e~L~~Ia~~s  551 (629)
                         ..+  +.++++++++|++.+
T Consensus       236 ~l~~~~i~l~~~~~a~~~l~~~~  258 (315)
T d1r6bx3         236 QLDQKGVSLEVSQEARNWLAEKG  258 (315)
T ss_dssp             HHHHTTEEEEECHHHHHHHHHHH
T ss_pred             HHHhcCcchhhHHHHHHHHHHhC
Confidence               223  356888888888764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.4e-13  Score=127.90  Aligned_cols=165  Identities=14%  Similarity=0.183  Sum_probs=117.4

Q ss_pred             hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742          350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE  429 (629)
Q Consensus       350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle  429 (629)
                      ++.+...++-++|.++.++.+.+.|......++||.||||+|||++++.+|..+.....+          .......+++
T Consensus        14 ~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp----------~~L~~~~i~~   83 (195)
T d1jbka_          14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----------EGLKGRRVLA   83 (195)
T ss_dssp             HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSC----------GGGTTCEEEE
T ss_pred             HHHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCC----------HHHcCceEEE
Confidence            334445678899999999999999998778899999999999999999999988644321          1233445777


Q ss_pred             Eeccc---chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEEEec
Q 036742          430 LNVNL---QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLILCCE  498 (629)
Q Consensus       430 Inas~---~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ILitN  498 (629)
                      ++...   ........++.++.+......  ...+.||||||++.+..        ++.+.|+..++.  ....+|.+|+
T Consensus        84 ld~~~LiAg~~~rG~~E~rl~~il~e~~~--~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT  159 (195)
T d1jbka_          84 LDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT  159 (195)
T ss_dssp             ECHHHHHTTTCSHHHHHHHHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred             eeHHHHhccCCccHHHHHHHHHHHHHHhc--CCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCC
Confidence            77631   111112334445555443311  11235999999999932        245788888873  6778888887


Q ss_pred             CCc-----cchHHHhhcceEeeccCCCHHHHHHHH
Q 036742          499 DDV-----DIIESVKTHCKVIKVDPPVTHEIMEVL  528 (629)
Q Consensus       499 ~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL  528 (629)
                      ..+     .-+++|.+||..|.+..|+.++...+|
T Consensus       160 ~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            533     238999999999999999999887665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.34  E-value=7e-12  Score=129.04  Aligned_cols=232  Identities=14%  Similarity=0.077  Sum_probs=122.3

Q ss_pred             CCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc-------------
Q 036742          356 SLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA-------------  422 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~-------------  422 (629)
                      .|.+|+||+.++..|.-.+......|+||.||||||||++|++++.-|-...........+......             
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIR   84 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEE
T ss_pred             ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCccc
Confidence            6999999999998766555422224899999999999999999998651000000000000000000             


Q ss_pred             CCcceEEEecccchhhHHHHHH-HHHHHHHHhc-cCcC-----CCCeEEEEEccchhhHHHHHHHHHHHhccC-------
Q 036742          423 SSAHHVELNVNLQANAKYALMG-LVKEIRDNLA-ITPE-----VSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------  488 (629)
Q Consensus       423 sS~~vleInas~~~~~k~~l~~-~lrei~~~~~-~~~~-----~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------  488 (629)
                      ....+.........+  .++.. .+......-. ....     ..+.|+||||++.+.+..+++|+..||+..       
T Consensus        85 ~~~~~~~~~~~~~~~--~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g  162 (333)
T d1g8pa_          85 KPTPVVDLPLGVSED--RVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDG  162 (333)
T ss_dssp             ECCCEEEECTTCCHH--HHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTT
T ss_pred             ccCceeeccCCCCcc--cccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEecccC
Confidence            000111111111000  00000 0000010000 0000     124599999999999999999999998542       


Q ss_pred             ------CCcEEEEEecCCc-cchHHHhhcce-EeeccCCCH-HHHHHHHHHH----------------------------
Q 036742          489 ------DSCKLILCCEDDV-DIIESVKTHCK-VIKVDPPVT-HEIMEVLIQI----------------------------  531 (629)
Q Consensus       489 ------~~~~~ILitN~~~-~I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i----------------------------  531 (629)
                            ..+.+|.++|..+ .+.+++.+||. .+.+..+.. .+...++...                            
T Consensus       163 ~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
T d1g8pa_         163 LSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEA  242 (333)
T ss_dssp             CCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHH
Confidence                  2334556666644 48999999995 466665543 2222222110                            


Q ss_pred             -HHhcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742          532 -ARKEDFDLSMTFAAKIATKA---KQ-NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL  589 (629)
Q Consensus       532 -~~kegl~is~e~L~~Ia~~s---~G-DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei  589 (629)
                       ..-..+.++++....++...   .. .+|..+.++..+...+.-...+...+.++++++.-+
T Consensus       243 ~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lv  305 (333)
T d1g8pa_         243 RERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA  305 (333)
T ss_dssp             HHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             hhcccceecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence             01122455666655554442   22 678888888765544433334555556666555444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=7.4e-12  Score=131.44  Aligned_cols=174  Identities=16%  Similarity=0.184  Sum_probs=109.5

Q ss_pred             CcccccHHHHHHHHHHHH------------------------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          358 NGFICHRHEAQLLKELVV------------------------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~------------------------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      .-|+||+++++.+..++.                              .....++||.||+|||||.+|++||+.+... 
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~-   95 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-   95 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC-
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccc-
Confidence            458999999998887763                              1234589999999999999999999986332 


Q ss_pred             CCCCCCCccccccccCCcceEEEecccchh---hHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchh-----------
Q 036742          408 CWNEKWPTQVLVPVASSAHHVELNVNLQAN---AKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKA-----------  472 (629)
Q Consensus       408 ~~~~~~~~~v~~~i~sS~~vleInas~~~~---~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~L-----------  472 (629)
                                         ++.++++....   ..+.....+.++....... ....+.|+++||+|.+           
T Consensus        96 -------------------~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~  156 (364)
T d1um8a_          96 -------------------IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR  156 (364)
T ss_dssp             -------------------EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred             -------------------eeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccc
Confidence                               34444432111   1111123334433322111 1123469999999994           


Q ss_pred             ---hHHHHHHHHHHHhccC-------------CCcEEEEEecC-------------------------------------
Q 036742          473 ---AEHIQYLIKWIMDGYT-------------DSCKLILCCED-------------------------------------  499 (629)
Q Consensus       473 ---s~~~q~aLlrilEe~~-------------~~~~~ILitN~-------------------------------------  499 (629)
                         .++.++.|+++++...             .++.+|.++|-                                     
T Consensus       157 d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (364)
T d1um8a_         157 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQE  236 (364)
T ss_dssp             ---CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTT
T ss_pred             cccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhh
Confidence               5578999999998321             11112222221                                     


Q ss_pred             ------------CccchHHHhhcc-eEeeccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc
Q 036742          500 ------------DVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKA  551 (629)
Q Consensus       500 ------------~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s  551 (629)
                                  ...+.|.|..|+ .++.|.+++.+++.++|..           ....+|+  .++++++++|++..
T Consensus       237 ~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g  314 (364)
T d1um8a_         237 AILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA  314 (364)
T ss_dssp             TSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred             hhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhc
Confidence                        011456778888 5689999999999998852           2333455  46899999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.26  E-value=4e-13  Score=141.17  Aligned_cols=172  Identities=15%  Similarity=0.030  Sum_probs=103.8

Q ss_pred             HHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHH
Q 036742          368 QLLKELVVDGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV  446 (629)
Q Consensus       368 ~~Lk~~L~~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~l  446 (629)
                      +.|+.+++... .+.+|||||||||||++|+++|+.+.+.                    ++++|+++.+...     .+
T Consensus       142 ~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~--------------------~i~in~s~~rs~~-----~l  196 (362)
T d1svma_         142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK--------------------ALNVNLPLDRLNF-----EL  196 (362)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE--------------------EECCSSCTTTHHH-----HH
T ss_pred             HHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC--------------------EEEEECcchhhHH-----HH
Confidence            34555444322 2479999999999999999999998443                    6777777655431     11


Q ss_pred             HHHHHHhc----------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhc------cCCCcEEEEEecCCcc-chHHHhh
Q 036742          447 KEIRDNLA----------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG------YTDSCKLILCCEDDVD-IIESVKT  509 (629)
Q Consensus       447 rei~~~~~----------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe------~~~~~~~ILitN~~~~-I~~aLrS  509 (629)
                      +.....+.          ......+.+++|||+|.|.........-.++.      .....++|+|||+... +..++|.
T Consensus       197 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf  276 (362)
T d1svma_         197 GVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARF  276 (362)
T ss_dssp             GGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTE
T ss_pred             HhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeecccccccccccccC
Confidence            11111110          00112235788888888754322111000111      0122368999996543 4444555


Q ss_pred             cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHccCCHHHHHHHHHH
Q 036742          510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIA-TKAKQNLRKAIMALEA  564 (629)
Q Consensus       510 R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia-~~s~GDiR~AInlLq~  564 (629)
                      ++.++.+.++.......++..++.++.+.++.+.+..++ ..+++|++.+++.+..
T Consensus       277 ~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~  332 (362)
T d1svma_         277 VKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIV  332 (362)
T ss_dssp             EEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHH
T ss_pred             ceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            555555565556666788888999999988877776644 5566788888877654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.09  E-value=1.1e-09  Score=108.58  Aligned_cols=193  Identities=13%  Similarity=0.145  Sum_probs=121.0

Q ss_pred             cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742          359 GFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA  436 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~  436 (629)
                      |+||+..+.+.+.+.++.  ....+|||+|++||||+++|++|........                 ..++.+++....
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~-----------------~~~~~~~~~~~~   63 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSK-----------------EPFVALNVASIP   63 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTT-----------------SCEEEEETTTSC
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcc-----------------cccccchhhhhh
Confidence            467776666655555542  1223699999999999999999987532221                 125666664322


Q ss_pred             hhHHHHHHHHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEe
Q 036742          437 NAKYALMGLVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCC  497 (629)
Q Consensus       437 ~~k~~l~~~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILit  497 (629)
                      .. .....++......+....        ...+.+|||||||.|....|..|..+++...           .++++|+++
T Consensus        64 ~~-~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s  142 (247)
T d1ny5a2          64 RD-IFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAAT  142 (247)
T ss_dssp             HH-HHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEE
T ss_pred             hc-ccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEec
Confidence            21 011111111011111000        1124589999999999999999999997421           246789988


Q ss_pred             cCCc-------cchHHHhhcc--eEeeccCCC--HHHHHH----HHHHHHHhcCC---CCCHHHHHHHHHHc-cCCHHHH
Q 036742          498 EDDV-------DIIESVKTHC--KVIKVDPPV--THEIME----VLIQIARKEDF---DLSMTFAAKIATKA-KQNLRKA  558 (629)
Q Consensus       498 N~~~-------~I~~aLrSR~--~~I~F~ppt--~eei~~----iL~~i~~kegl---~is~e~L~~Ia~~s-~GDiR~A  558 (629)
                      +..-       .+.+.|..|+  ..|.++++.  .+++..    +|...+.+.+.   .++++++..|.... .||+|+.
T Consensus       143 ~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL  222 (247)
T d1ny5a2         143 NRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVREL  222 (247)
T ss_dssp             SSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHH
T ss_pred             CCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHH
Confidence            7642       2566677776  356777774  345543    44445555444   36899999998775 7999999


Q ss_pred             HHHHHHHHhcC
Q 036742          559 IMALEACKALN  569 (629)
Q Consensus       559 InlLq~~~~~~  569 (629)
                      .+.++.+....
T Consensus       223 ~~~l~~a~~~~  233 (247)
T d1ny5a2         223 KNVIERAVLFS  233 (247)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999876643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.03  E-value=1.7e-10  Score=118.76  Aligned_cols=123  Identities=15%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc----cchhhHHHHHHHHHHHHHHhccC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN----LQANAKYALMGLVKEIRDNLAIT  456 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas----~~~~~k~~l~~~lrei~~~~~~~  456 (629)
                      ++||+||||||||.+|++||.++.+...                  ++.++.+    .+.|..   ...++++.....  
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~------------------~~~~~~~~~~~~~~G~~---e~~~~~~f~~a~--  181 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDK------------------YATVRFGEPLSGYNTDF---NVFVDDIARAML--  181 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSC------------------CEEEEBSCSSTTCBCCH---HHHHHHHHHHHH--
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCC------------------eEEEEhhHhhhcccchH---HHHHHHHHHHHh--
Confidence            4667999999999999999999853321                  2334432    222321   223333333221  


Q ss_pred             cCCCCeEEEEEccchhhH------------HHHHHHHHHHhcc--CCCcEEEEEecCCccchHHHh----h--cc-eEee
Q 036742          457 PEVSNAMIVIYEVDKAAE------------HIQYLIKWIMDGY--TDSCKLILCCEDDVDIIESVK----T--HC-KVIK  515 (629)
Q Consensus       457 ~~~~~kVIIIDEID~Ls~------------~~q~aLlrilEe~--~~~~~~ILitN~~~~I~~aLr----S--R~-~~I~  515 (629)
                         .++||||||||.+..            ...+.|+.-|+.+  ..++.||.+|| +..++++|.    +  |+ ..+.
T Consensus       182 ---~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~r~~Rf~~~v~  257 (321)
T d1w44a_         182 ---QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVKEASRSNSTSL  257 (321)
T ss_dssp             ---HCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHHHHHHHSCSEE
T ss_pred             ---hccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-CcccccchhhhhhccCcccceee
Confidence               135999999999932            2334555555533  24577788888 444444332    2  33 5677


Q ss_pred             ccCCCHHHHHHHHHH
Q 036742          516 VDPPVTHEIMEVLIQ  530 (629)
Q Consensus       516 F~ppt~eei~~iL~~  530 (629)
                      +.+|+.+...++|..
T Consensus       258 v~~pd~~~r~~il~~  272 (321)
T d1w44a_         258 VISTDVDGEWQVLTR  272 (321)
T ss_dssp             EEECSSTTEEEEEEE
T ss_pred             cCCCChHHHHHHHHH
Confidence            777877766666643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.99  E-value=1.7e-08  Score=97.80  Aligned_cols=176  Identities=16%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-
Q 036742          355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-  433 (629)
Q Consensus       355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-  433 (629)
                      ..-++++|.++.++.|.+.    ..++++|+||+|+|||+|++.++..+....                    ..+++. 
T Consensus         9 ~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~--------------------~~i~~~~   64 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLPY--------------------IYLDLRK   64 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCCE--------------------EEEEGGG
T ss_pred             CChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe--------------------EEEEecc
Confidence            4569999999988887653    346899999999999999999999873321                    111110 


Q ss_pred             ----cchhhHHHH---HHH---------------------------------------HHHHHHHhccCcCCCCeEEEEE
Q 036742          434 ----LQANAKYAL---MGL---------------------------------------VKEIRDNLAITPEVSNAMIVIY  467 (629)
Q Consensus       434 ----~~~~~k~~l---~~~---------------------------------------lrei~~~~~~~~~~~~kVIIID  467 (629)
                          .........   ...                                       +.++...+.. ......+|++|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~i~id  143 (283)
T d2fnaa2          65 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ-ASKDNVIIVLD  143 (283)
T ss_dssp             GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH-TCSSCEEEEEE
T ss_pred             ccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHh-hcccccccccc
Confidence                000000000   000                                       0011111000 11233489999


Q ss_pred             ccchhhH----HHHHHHHHHHhccCCCcEEEEEecCCccch----------HHHhhcceEeeccCCCHHHHHHHHHHHHH
Q 036742          468 EVDKAAE----HIQYLIKWIMDGYTDSCKLILCCEDDVDII----------ESVKTHCKVIKVDPPVTHEIMEVLIQIAR  533 (629)
Q Consensus       468 EID~Ls~----~~q~aLlrilEe~~~~~~~ILitN~~~~I~----------~aLrSR~~~I~F~ppt~eei~~iL~~i~~  533 (629)
                      |++.+..    .....|...+.. .....+|+++.....+.          +.+.+++..+.+.+++.+++.++|.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~  222 (283)
T d2fnaa2         144 EAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ  222 (283)
T ss_dssp             TGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHh-hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhh
Confidence            9998843    223344444433 34556666654322211          11122346789999999999999999888


Q ss_pred             hcCCCCCHHHHHHHHHHccCCHHHH
Q 036742          534 KEDFDLSMTFAAKIATKAKQNLRKA  558 (629)
Q Consensus       534 kegl~is~e~L~~Ia~~s~GDiR~A  558 (629)
                      ..++..+  .++.|.+.++|.+...
T Consensus       223 ~~~~~~~--~~~~i~~~~~G~P~~L  245 (283)
T d2fnaa2         223 EADIDFK--DYEVVYEKIGGIPGWL  245 (283)
T ss_dssp             HHTCCCC--CHHHHHHHHCSCHHHH
T ss_pred             hcCCCHH--HHHHHHHHhCCCHHHH
Confidence            7776554  4788999999998743

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=7.9e-08  Score=102.73  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             EEEEEccchh------------hHHHHHHHHHHHhccC----------CCcEEEEEecC----CccchHHHhhcc-eEee
Q 036742          463 MIVIYEVDKA------------AEHIQYLIKWIMDGYT----------DSCKLILCCED----DVDIIESVKTHC-KVIK  515 (629)
Q Consensus       463 VIIIDEID~L------------s~~~q~aLlrilEe~~----------~~~~~ILitN~----~~~I~~aLrSR~-~~I~  515 (629)
                      ++++||+|..            ..+.+..++.+++...          ....+|.....    +..+.+.|.-|+ ..+.
T Consensus       252 ~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~  331 (443)
T d1g41a_         252 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE  331 (443)
T ss_dssp             EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred             ccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEE
Confidence            8999999987            2356667777776422          22223333222    345789999998 5789


Q ss_pred             ccCCCHHHHHHHHHH-----------HHHhcCCC--CCHHHHHHHHHHc
Q 036742          516 VDPPVTHEIMEVLIQ-----------IARKEDFD--LSMTFAAKIATKA  551 (629)
Q Consensus       516 F~ppt~eei~~iL~~-----------i~~kegl~--is~e~L~~Ia~~s  551 (629)
                      |.+++.+++..||..           ...-+|+.  ++++++..||+.+
T Consensus       332 L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A  380 (443)
T d1g41a_         332 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA  380 (443)
T ss_dssp             CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence            999999999998843           23345664  4899999998775

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.51  E-value=9.3e-07  Score=88.12  Aligned_cols=179  Identities=13%  Similarity=0.124  Sum_probs=102.3

Q ss_pred             CcccccHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHHhCC--CCCCCCCCccccccccCCcceEEEec
Q 036742          358 NGFICHRHEAQLLKELVVDG---NCPHILIKGQSGSGKRALAMALLHEIYGD--ACWNEKWPTQVLVPVASSAHHVELNV  432 (629)
Q Consensus       358 ddIiG~e~~~~~Lk~~L~~g---~~p~ILL~GPPGtGKTtLAraLAkeL~g~--~~~~~~~~~~v~~~i~sS~~vleIna  432 (629)
                      .+++|.+..++.|.++|...   ....|.|+|..|+||||||+.+++.....  ..+.               .++.++.
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~---------------~~~Wv~v   84 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD---------------SIVWLKD   84 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS---------------EEEEEEC
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCc---------------eEEEEEe
Confidence            44679999999998888532   23357799999999999999998863211  0000               0223332


Q ss_pred             ccchhhHHHHHHHHHHHHHHhcc------------------------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC
Q 036742          433 NLQANAKYALMGLVKEIRDNLAI------------------------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT  488 (629)
Q Consensus       433 s~~~~~k~~l~~~lrei~~~~~~------------------------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~  488 (629)
                      +...... .+...+.........                        .......+||||+++....  .   ..+.   .
T Consensus        85 s~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~--~---~~~~---~  155 (277)
T d2a5yb3          85 SGTAPKS-TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I---RWAQ---E  155 (277)
T ss_dssp             CCCSTTH-HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H---HHHH---H
T ss_pred             cCCCCHH-HHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhh--h---hhhc---c
Confidence            2111111 111111111111000                        0012345999999986422  1   1111   1


Q ss_pred             CCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHH
Q 036742          489 DSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF-DLSMTFAAKIATKAKQNLRKAIMAL  562 (629)
Q Consensus       489 ~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl-~is~e~L~~Ia~~s~GDiR~AInlL  562 (629)
                      ..+++|+||... .+...+...+..+.+.+++.++..+.+...+..... ...+++...|++.|+|.+ -||.++
T Consensus       156 ~~srilvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP-LAl~~i  228 (277)
T d2a5yb3         156 LRLRCLVTTRDV-EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP-ATLMMF  228 (277)
T ss_dssp             TTCEEEEEESBG-GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             cCceEEEEeehH-HHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH-HHHHHH
Confidence            356777777644 444444556678999999999999988755432221 112456788999999975 445444

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.28  E-value=3.4e-06  Score=76.61  Aligned_cols=61  Identities=15%  Similarity=0.276  Sum_probs=37.4

Q ss_pred             CCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCCcc--chHHHhhcc--eEeeccCCCHH
Q 036742          460 SNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDVD--IIESVKTHC--KVIKVDPPVTH  522 (629)
Q Consensus       460 ~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~~~--I~~aLrSR~--~~I~F~ppt~e  522 (629)
                      ...||+|||++..   ..+....+.++++.  ....+|++++....  +...+..+.  .++.+...+.+
T Consensus        99 ~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd  166 (178)
T d1ye8a1          99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRD  166 (178)
T ss_dssp             TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTT
T ss_pred             CCCceeecCCCccchhhHHHHHHHHHHhcc--CCCEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHH
Confidence            4569999998765   44566777777763  35667777766542  344444443  45555554433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.25  E-value=2.9e-07  Score=89.38  Aligned_cols=51  Identities=29%  Similarity=0.447  Sum_probs=35.5

Q ss_pred             CCCcccccHHHHHHHHHHHHc---CCCC-eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          356 SLNGFICHRHEAQLLKELVVD---GNCP-HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       356 tfddIiG~e~~~~~Lk~~L~~---g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      +|.|.-+++.+.+.|..++..   ...| +|||+||||||||++|++||.++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~   59 (273)
T d1gvnb_           5 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGN   59 (273)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred             ccChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            345555555555555555432   2223 69999999999999999999997443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.21  E-value=3.5e-06  Score=80.38  Aligned_cols=116  Identities=12%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHH
Q 036742          366 EAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG  444 (629)
Q Consensus       366 ~~~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~  444 (629)
                      -+..|+.+|+...- ..++|+|||+||||++|.+|++.+.|.-.                    ..+-+  .        
T Consensus        39 Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi--------------------s~~N~--~--------   88 (205)
T d1tuea_          39 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI--------------------SFVNS--T--------   88 (205)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC--------------------CCCCS--S--------
T ss_pred             HHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEE--------------------eccCC--C--------
Confidence            34667788864332 36889999999999999999999854311                    11000  0        


Q ss_pred             HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHH-HHHHHhccC-------------CCcEEEEEecCCcc---chHHH
Q 036742          445 LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYL-IKWIMDGYT-------------DSCKLILCCEDDVD---IIESV  507 (629)
Q Consensus       445 ~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~a-LlrilEe~~-------------~~~~~ILitN~~~~---I~~aL  507 (629)
                            ..|.+......+|+++||+-.......+. |+.+++...             ...++|+|+|..-.   -..+|
T Consensus        89 ------s~F~Lq~l~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~~~L  162 (205)
T d1tuea_          89 ------SHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYL  162 (205)
T ss_dssp             ------SCGGGGGGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHH
T ss_pred             ------CCcccccccCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCCCccccchhh
Confidence                  01222222334689999997776554443 566665321             23468888887543   35789


Q ss_pred             hhcceEeecc
Q 036742          508 KTHCKVIKVD  517 (629)
Q Consensus       508 rSR~~~I~F~  517 (629)
                      .+|+.++.|+
T Consensus       163 ~sRi~~f~F~  172 (205)
T d1tuea_         163 ESRITVFEFP  172 (205)
T ss_dssp             HTSCEEEECC
T ss_pred             hheEEEEECC
Confidence            9999999997

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=2.1e-06  Score=72.90  Aligned_cols=49  Identities=24%  Similarity=0.429  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742          580 LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY  628 (629)
Q Consensus       580 ~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~  628 (629)
                      .||+..+.+++..++.++|++.|..+|+++|+||.+|+||++||+.|.+
T Consensus         2 pdWe~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~   50 (99)
T d1sxje1           2 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTF   50 (99)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.59  E-value=0.00027  Score=62.42  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.|++.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999986

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.59  E-value=3.7e-05  Score=76.24  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHH
Q 036742          368 QLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGL  445 (629)
Q Consensus       368 ~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~  445 (629)
                      ..|..||..+  .-..++|+||+++|||+++.+|+..+ |..                    ..++-+.           
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~--------------------~~~~~~~-----------  138 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFY--------------------GCVNWTN-----------  138 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCE--------------------EECCTTC-----------
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh-cch--------------------hhccccC-----------
Confidence            4555666433  22368899999999999999999986 542                    1111110           


Q ss_pred             HHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc--------------CCCcEEEEEecCCcc---------
Q 036742          446 VKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--------------TDSCKLILCCEDDVD---------  502 (629)
Q Consensus       446 lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--------------~~~~~~ILitN~~~~---------  502 (629)
                           ..|....-...+|+++||++.-. ...+.++.++...              .....+|+++|+...         
T Consensus       139 -----~~f~l~~l~~k~~~~~~e~~~~~-~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~~~  212 (267)
T d1u0ja_         139 -----ENFPFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTF  212 (267)
T ss_dssp             -----SSCTTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEEC
T ss_pred             -----CCccccccCCCEEEEEeCCCccc-cHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCcccc
Confidence                 01223333345699999987543 3344566665432              133456777777543         


Q ss_pred             -chHHHhhcceEeeccC
Q 036742          503 -IIESVKTHCKVIKVDP  518 (629)
Q Consensus       503 -I~~aLrSR~~~I~F~p  518 (629)
                       -..+|++|+.++.|..
T Consensus       213 ~~~~~l~~R~~~~~F~~  229 (267)
T d1u0ja_         213 EHQQPLQDRMFKFELTR  229 (267)
T ss_dssp             TTHHHHHTTEEEEECCS
T ss_pred             ccchHhhhhEEEEECCC
Confidence             2478999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.58  E-value=0.0004  Score=60.80  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -|+|+||||+||||+|+.|+...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.50  E-value=2.5e-05  Score=69.79  Aligned_cols=25  Identities=36%  Similarity=0.615  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|.|+|.|||||||||+|++||+.+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999997

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.3e-05  Score=68.73  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|.|||||||||+|++||+.|
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999997

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.9e-05  Score=69.54  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=23.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +||+|+||||||||||+++++..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            47999999999999999999999853

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.0005  Score=70.61  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +..+..+..++..   +..+|+||||||||+++..+...+
T Consensus       151 ~~Q~~A~~~al~~---~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         151 NWQKVAAAVALTR---RISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             CHHHHHHHHHHTB---SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcC---CeEEEEcCCCCCceehHHHHHHHH
Confidence            4445556666643   468999999999999887666554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=3.2e-05  Score=69.28  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ...|+|.|||||||||+|++||+.+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3479999999999999999999986

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.28  E-value=0.00067  Score=58.90  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=18.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ....+|.+|+|+|||+++-.++.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~   31 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAA   31 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH
Confidence            346899999999999987655543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.28  E-value=0.00052  Score=62.05  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|+|.|+||+||||+|+.+|+.| |.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L-g~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL-GY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH-TC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-CC
Confidence            58889999999999999999997 44

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.23  E-value=7.5e-05  Score=66.64  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|+|+||+||||+|++||+.|.
T Consensus         8 ~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            377999999999999999999985

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.22  E-value=7.2e-05  Score=66.97  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +|+|.||||+||||+|++||+.+.
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.0005  Score=63.23  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          382 ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |+|+|.||+||||+|++||+.+.
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=65.23  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|.|||||||||+|++|++.+.
T Consensus         8 iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            366899999999999999999973

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00014  Score=65.73  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |.|+|.|+|||||||++++||+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            6688889999999999999999983

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00063  Score=62.30  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|||+|+|||||||+|+.++..
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999988765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00018  Score=65.48  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      |+|+|+||+||||+|++||+.+..
T Consensus        22 I~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          22 VWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            669999999999999999999743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.02  E-value=0.00013  Score=64.87  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.|+|+||||+||||+|++|++.+
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            358899999999999999999996

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00024  Score=63.00  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|.+.|+|++|+|||||+..|++++...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            4778999999999999999999987543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.84  E-value=0.00029  Score=63.59  Aligned_cols=25  Identities=40%  Similarity=0.529  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      +|+|.|+||+||||++++||+.+ +.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l-~~   26 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL-DL   26 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-TC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh-CC
Confidence            58899999999999999999997 44

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.82  E-value=0.00015  Score=64.75  Aligned_cols=23  Identities=39%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -|+|.|||||||||+|++|++.+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.80  E-value=0.00032  Score=64.45  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|||||||||+|+.||+.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999996

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.0018  Score=60.02  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHH-HHHHH
Q 036742          381 HILIKGQSGSGKRALAMA-LLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAra-LAkeL  403 (629)
                      ++++.+|+|+|||++|.. ++..+
T Consensus        42 ~~il~apTGsGKT~~a~l~i~~~~   65 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAEMAMVREA   65 (202)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHHHHHHHHh
Confidence            699999999999998743 44443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.77  E-value=0.0018  Score=59.46  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++|+++|.|+|||.++-.++...
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHH
Confidence            58899999999999877776543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.76  E-value=0.0028  Score=59.23  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             cccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          359 GFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       359 dIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++-..+...+.+..++..+   +.+|.+|+|+|||.+|-+++.++
T Consensus        68 ~~~Lr~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          68 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHh
Confidence            4445566666777776543   56788999999999999888875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.00036  Score=63.08  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999997

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.74  E-value=0.00027  Score=65.04  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++.|+|.||||+||||+|+.||..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999986

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0047  Score=58.64  Aligned_cols=28  Identities=32%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCCCe-EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          377 GNCPH-ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       377 g~~p~-ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +..|+ ++|.||+|+||||++--+|..+.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34454 56899999999998888888764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00035  Score=64.49  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..+.|+|.||||+||||+|+.||+.+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35578899999999999999999986

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.64  E-value=0.0046  Score=58.50  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..++|.||+|+||||++--||..+.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999998888888764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.63  E-value=0.0005  Score=62.53  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999997

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.58  E-value=0.0015  Score=55.47  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=17.8

Q ss_pred             CeEEEEcCCCCcHHHHHH-HHHHHH
Q 036742          380 PHILIKGQSGSGKRALAM-ALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAr-aLAkeL  403 (629)
                      ..++|++|+|+|||..+- ++...+
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHh
Confidence            368999999999997764 334443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.55  E-value=0.0007  Score=60.40  Aligned_cols=26  Identities=12%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .|+|.||||+||||+++.|+..|...
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            48899999999999999999998544

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.022  Score=52.97  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      +.|||||+|.|.. +....+..+++..+....+++.+..
T Consensus       148 ~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT  186 (206)
T d1veca_         148 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT  186 (206)
T ss_dssp             CEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             ceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEec
Confidence            4999999999853 3455666777766677777766543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.53  E-value=0.00064  Score=61.95  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999997

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00067  Score=62.85  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|-|.+.||||+||+|+|+.||+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3667899999999999999999997

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.51  E-value=0.00063  Score=62.36  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999999986

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.51  E-value=0.0088  Score=61.80  Aligned_cols=51  Identities=25%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      ..+++++...+...+.|++++... ...+||.||.|+||||++.++..++..
T Consensus       134 ~~~l~~LG~~~~~~~~l~~l~~~~-~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         134 RLDLHSLGMTAHNHDNFRRLIKRP-HGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHTSS-SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             chhhhhhcccHHHHHHHHHHHhhh-hceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            456788888899999999888643 235889999999999999999999843

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.056  Score=50.16  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      +.++|||+|.|..  +....+..+++..+....+++.+...
T Consensus       147 ~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~  187 (207)
T d1t6na_         147 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL  187 (207)
T ss_dssp             CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred             ceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeC
Confidence            4999999999853  56667777887777777777765443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00069  Score=61.78  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37788999999999999999986

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00075  Score=61.87  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||.|+.||+.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999986

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0008  Score=61.03  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||||+||||+|+.||+.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999986

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.018  Score=54.24  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      +.|||||+|.|... ..+.+..+++..+....+|+.+...
T Consensus       157 ~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~  196 (218)
T d2g9na1         157 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM  196 (218)
T ss_dssp             CEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred             eEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecC
Confidence            39999999999653 4566677777777778888876544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.34  E-value=0.0058  Score=61.50  Aligned_cols=39  Identities=21%  Similarity=0.428  Sum_probs=33.2

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++....|..+++.+.  +||++||+|+||||++++++.++
T Consensus       152 ~~~~~~~l~~~v~~~~--nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         152 KEQAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHHHHHHHHHHHTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHHhCC--CEEEEeeccccchHHHHHHhhhc
Confidence            4566778888888765  69999999999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.32  E-value=0.00092  Score=61.58  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|+|.||||+||+|+|+.||+.+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999999985

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.27  E-value=0.001  Score=59.63  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      -|+|.|+||+||||+++.|++.|...
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999998533

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.27  E-value=0.011  Score=55.86  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=16.7

Q ss_pred             CCe-EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          379 CPH-ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       379 ~p~-ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+ ++|.||+|+||||++--+|..+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344 56899999999998888887653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.011  Score=54.25  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|+||+|||+|..++...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.25  E-value=0.00092  Score=61.91  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -.|+|.||||+||||+|+.||..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            368889999999999999999985

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.029  Score=51.62  Aligned_cols=38  Identities=11%  Similarity=0.157  Sum_probs=27.5

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      +.++|||+|.+... ....+..++...+.+..+|+.+..
T Consensus       149 ~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SAT  187 (209)
T d1q0ua_         149 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT  187 (209)
T ss_dssp             CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             eEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEcc
Confidence            38999999999654 345567777766677777776544

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.055  Score=49.94  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      +.|+|||+|.|.. +....+..+++..+..+.+|+.+..
T Consensus       145 ~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SAT  183 (206)
T d1s2ma1         145 SLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT  183 (206)
T ss_dssp             CEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred             eEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEe
Confidence            3899999999954 4566778888877777777776544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.17  E-value=0.003  Score=56.90  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHcCC--CCeEE-EEcCCCCcHHHHHHHHHHHHhC
Q 036742          366 EAQLLKELVVDGN--CPHIL-IKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       366 ~~~~Lk~~L~~g~--~p~IL-L~GPPGtGKTtLAraLAkeL~g  405 (629)
                      .+..|+..+....  .|-|+ |.||+|+||||+|+.|+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3444444443222  23344 9999999999999999988743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0034  Score=56.41  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|||||+|+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0075  Score=53.84  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|++.++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998863

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.11  E-value=0.031  Score=51.87  Aligned_cols=38  Identities=11%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCED  499 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~  499 (629)
                      +.|+|||+|.|.. +....+.++++..+.++.+|+.+..
T Consensus       147 ~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT  185 (208)
T d1hv8a1         147 KYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT  185 (208)
T ss_dssp             CEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred             cEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEcc
Confidence            4999999998743 3445677777777777777776543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.10  E-value=0.0014  Score=60.98  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |.+.||||+||||+|+.||+.+
T Consensus         6 IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4577999999999999999997

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.09  E-value=0.017  Score=54.44  Aligned_cols=24  Identities=29%  Similarity=0.266  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|.||+|+||||++-.||..+.
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999998888888764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.007  Score=54.12  Aligned_cols=21  Identities=29%  Similarity=0.640  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.021  Score=51.91  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      |.|+|.|+||+|||+|..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.009  Score=56.68  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+|.||+|+||||++--||..+.
T Consensus        13 vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            367999999999998877887763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.011  Score=56.87  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|||||||+++++..+
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46799999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0081  Score=53.56  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.013  Score=51.63  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.038  Score=51.64  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      +.++|||+|.|... ..+.+..+++..+..+.+++.+...
T Consensus       153 ~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~  192 (212)
T d1qdea_         153 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM  192 (212)
T ss_dssp             CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred             eEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeC
Confidence            49999999999653 4566777777777777777765443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0041  Score=55.25  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|++|+|||+|+..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.014  Score=51.86  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|||||+|++.+...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.051  Score=51.25  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=28.5

Q ss_pred             eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742          462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD  500 (629)
Q Consensus       462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~  500 (629)
                      +.+||||+|.|.. +....+..+++..+....+++.+...
T Consensus       161 ~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~  200 (222)
T d2j0sa1         161 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL  200 (222)
T ss_dssp             CEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred             eeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            3999999999854 35566777787777777777765543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0065  Score=54.57  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .++|.|++|+|||+|++.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.022  Score=50.34  Aligned_cols=21  Identities=19%  Similarity=0.556  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.018  Score=50.95  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.022  Score=51.71  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=21.9

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742          377 GNCPHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       377 g~~p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +..|.|.|.|+||+|||||..+|.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            3456799999999999999999974

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.71  E-value=0.012  Score=56.86  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.||||||++++|+..+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46799999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.69  E-value=0.015  Score=56.03  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|||||||+++|+..+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999999865

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.68  E-value=0.0046  Score=58.15  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++.......-.|+|+|.||+||||+|++|++.+.
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444443433688999999999999999998773

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0092  Score=53.54  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|+..+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999988764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.65  E-value=0.0054  Score=59.72  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++|+..+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.032  Score=50.80  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.019  Score=51.04  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..++..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.088  Score=50.24  Aligned_cols=44  Identities=16%  Similarity=0.074  Sum_probs=36.0

Q ss_pred             cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ..|..+++.+.+.+..+..-..||+|..|+|||.++...+....
T Consensus        58 ~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~  101 (233)
T d2eyqa3          58 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV  101 (233)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH
Confidence            34667778888888887777899999999999999988776654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0089  Score=57.72  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|++.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.49  E-value=0.017  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++|+||||+|||++|..+|..+.
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.028  Score=50.80  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.017  Score=52.08  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|.+|+|||+|+..+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.42  E-value=0.0083  Score=58.44  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             eEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742          462 AMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDVDI  503 (629)
Q Consensus       462 kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~~~~I  503 (629)
                      .|||+||.-.- .......+...+.......-+|++|++...+
T Consensus       174 ~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~  216 (255)
T d2hyda1         174 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI  216 (255)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            39999998654 4555555555555544566788889877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.035  Score=50.27  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0045  Score=57.04  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||+|+||||+++.|+...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            38899999999999999999985

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0043  Score=56.84  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||+|+|||||++.|+++.
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999999884

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.11  Score=45.41  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|+..++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.041  Score=49.06  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|.|.|.+|+|||+|+.++.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.13  E-value=0.049  Score=47.63  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|++.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999998754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0056  Score=54.82  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -++|+||||+|||++|..+|....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.024  Score=49.41  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|+||+|||||+.++.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.032  Score=49.69  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=8.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|||||+|++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.94  E-value=0.0079  Score=53.53  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=23.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      .+-+.|++|+|||||+..|+++|...+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            456999999999999999999986443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.0067  Score=55.01  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.||+|+||||+++.++...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.085  Score=46.29  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|++|+|||+|++.+...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.005  Score=57.07  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+||||+|||+++..+|..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.038  Score=49.11  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999888763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.03  Score=50.42  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.81  E-value=0.039  Score=51.79  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+++.+|+|+|||+++...+..+
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHH
T ss_pred             CEEEEecCCChHHHHHHHHHHHH
Confidence            69999999999998877666554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.024  Score=54.46  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +-|.||.|+|||||.++|+..+
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5599999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.61  E-value=0.078  Score=46.87  Aligned_cols=20  Identities=30%  Similarity=0.688  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|+|||+|+..+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.066  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.733  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.032  Score=49.76  Aligned_cols=22  Identities=27%  Similarity=0.656  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|.+|+|||+|++.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.072  Score=51.69  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             HHHHHHcCCCC---eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          370 LKELVVDGNCP---HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       370 Lk~~L~~g~~p---~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |-.+|-.|.+|   -..|+||||+|||++|..++..+.
T Consensus        42 lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          42 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            33444324443   467999999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.075  Score=46.89  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||++++.+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.47  E-value=0.022  Score=56.19  Aligned_cols=32  Identities=28%  Similarity=0.652  Sum_probs=23.6

Q ss_pred             HHHHcC-CCCeEE-EEcCCCCcHHHHHHHHHHHH
Q 036742          372 ELVVDG-NCPHIL-IKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       372 ~~L~~g-~~p~IL-L~GPPGtGKTtLAraLAkeL  403 (629)
                      .+...+ ..|-|+ |.|++|+||||++..|...|
T Consensus        18 ~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          18 EWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             HHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            333333 345444 89999999999999988776

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.011  Score=55.16  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||||||||++|..+|...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.073  Score=50.67  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +.++|+||.++|||++.+.++-..
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHH
Confidence            468999999999999999988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.066  Score=46.78  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|+..+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.40  E-value=0.0099  Score=55.62  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -++|+||||+|||++|..+|...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.11  Score=45.72  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|++.+...
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.011  Score=54.66  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |-|.||+|+||||+|+.|+..+
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3499999999999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.16  E-value=0.013  Score=50.50  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|+||+|||+|++.++..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.066  Score=47.31  Aligned_cols=20  Identities=40%  Similarity=0.539  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|+|||+|++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.10  E-value=0.051  Score=47.74  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|++|+|||+|++.+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999998754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.08  Score=46.71  Aligned_cols=20  Identities=30%  Similarity=0.708  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|||||+|++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998875

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.93  E-value=0.21  Score=48.50  Aligned_cols=42  Identities=12%  Similarity=0.114  Sum_probs=32.8

Q ss_pred             ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.-.+..++.+..+++.+   ..++.-|.|+|||.+|-+++..+.
T Consensus       112 ~~~rdyQ~~av~~~l~~~---~~il~~pTGsGKT~i~~~i~~~~~  153 (282)
T d1rifa_         112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHhcC---CceeEEEcccCccHHHHHHHHHhh
Confidence            444677778888888764   467888999999999998887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.057  Score=47.60  Aligned_cols=20  Identities=25%  Similarity=0.592  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|+|||+|+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.88  E-value=0.12  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -..|+||+|||||++|..++..+.
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHH
Confidence            466999999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.075  Score=46.81  Aligned_cols=21  Identities=14%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|+..+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.81  E-value=0.021  Score=50.79  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|+|.|++|+|||+|++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.044  Score=48.56  Aligned_cols=21  Identities=38%  Similarity=0.653  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.62  E-value=0.029  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .|+|.|+=|+||||+++.+++.+
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEecCCCccHHHHHHHHHhhc
Confidence            47799999999999999999997

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.026  Score=50.28  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|++|+|||+|+..++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.47  E-value=0.13  Score=49.22  Aligned_cols=15  Identities=20%  Similarity=0.368  Sum_probs=13.4

Q ss_pred             CeEEEEcCCCCcHHH
Q 036742          380 PHILIKGQSGSGKRA  394 (629)
Q Consensus       380 p~ILL~GPPGtGKTt  394 (629)
                      ..+|+.+|+|+|||+
T Consensus        10 ~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2          10 RLTIMDLHPGAGKTK   24 (305)
T ss_dssp             CEEEECCCTTSSTTT
T ss_pred             CcEEEEECCCCCHHH
Confidence            368999999999996

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.43  E-value=0.048  Score=48.85  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|||||+|+..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.048  Score=47.96  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |++.|.+|+|||+|++.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.095  Score=46.02  Aligned_cols=21  Identities=29%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            889999999999999988753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.26  E-value=0.023  Score=52.71  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++|.||+|+|||||+..+.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6799999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.22  E-value=0.023  Score=49.17  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|.||||||+|++++...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.026  Score=51.35  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.||+|+||+||++.|++.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999876

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.05  E-value=0.033  Score=53.46  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=17.6

Q ss_pred             CeEEEEcCCCCcHHHHH-HHHHHHH
Q 036742          380 PHILIKGQSGSGKRALA-MALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLA-raLAkeL  403 (629)
                      .++|+.|+||||||+++ ..++..+
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHHH
Confidence            46899999999999864 4444443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.025  Score=52.82  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|.||+|+|||||.+.|+...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999999873

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.14  Score=44.89  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|.||+|||||+.+|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.91  E-value=0.027  Score=48.17  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|+||+|||+|+..+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.83  E-value=0.025  Score=52.02  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -++|.|+||+|||++|..+|..+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.74  E-value=0.029  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .++|+|+||+|||++|..+|..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5889999999999999876643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.067  Score=50.73  Aligned_cols=46  Identities=22%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC-CCCCCCCCCccccccccCCcceEEEeccc
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG-DACWNEKWPTQVLVPVASSAHHVELNVNL  434 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g-~~~~~~~~~~~v~~~i~sS~~vleInas~  434 (629)
                      ..+|+|+||+|||+++..+|..+.. ...        +.........+++++...
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~--------~~~~~~~~~~vl~~~~E~   77 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDL--------LEVGELPTGPVIYLPAED   77 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCT--------TCCCCCCCCCEEEEESSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCc--------ccccccCCCceEEEeccc
Confidence            4789999999999999999987632 211        111223345577777644

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.081  Score=52.92  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             HHHHHHHH-cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          368 QLLKELVV-DGNCPHILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       368 ~~Lk~~L~-~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      +.|..+.. .|+...|-|.||||+|||||+.+++..+...
T Consensus        42 ~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            34444433 4555567799999999999999999887543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.46  E-value=0.26  Score=46.93  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|.+|+|||+++.+|.++
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999998854

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.033  Score=51.28  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      -|.|.|+.|+||||+++.|++.|...+
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            478999999999999999999885443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.033  Score=51.90  Aligned_cols=27  Identities=19%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYGDA  407 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g~~  407 (629)
                      -|.|.|+.|+||||+++.|++.|...+
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~g   31 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAAG   31 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            367889999999999999999985443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.30  E-value=0.017  Score=52.45  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -|.|.|+.|+||||+++.|++.+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999999886

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.072  Score=52.95  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             CCCe-EEEEcCCCCcHHHHHHHHHHHHh
Q 036742          378 NCPH-ILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       378 ~~p~-ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.|- |-|.|++|+||||+|+.|+..|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3454 44999999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.17  E-value=0.041  Score=50.07  Aligned_cols=25  Identities=36%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      |.|.|+.|+||||+++.|++.|...
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            6789999999999999999988533

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.07  E-value=0.13  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .++|+||...|||++.+.++-..
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHHH
Confidence            48999999999999999887543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.05  E-value=0.055  Score=52.51  Aligned_cols=25  Identities=24%  Similarity=0.277  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCcHHHHH-HHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALA-MALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLA-raLAkeL~  404 (629)
                      .++|+.|+||||||+++ +.++..+.
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHHH
Confidence            36899999999999755 44555553

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.91  E-value=0.031  Score=49.04  Aligned_cols=21  Identities=24%  Similarity=0.388  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      -|+|.|++|+|||||..++..
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            599999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.73  E-value=0.034  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|||||||+++++..+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47799999999999999998754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.60  E-value=0.036  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||.++++..+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46799999999999999999865

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.18  Score=45.72  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      ++++.-|+|+|||.++.....
T Consensus        42 ~vlv~apTGsGKT~~~~~~~~   62 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPAL   62 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhhh
Confidence            699999999999988765443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.56  E-value=0.043  Score=52.76  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.||||||++++|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35588999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.44  E-value=0.044  Score=48.18  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=23.6

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .|..++....+ .|+|.|.||+|||+|+..+..
T Consensus         6 ~~~~~~~~k~~-kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           6 RIWRLFNHQEH-KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHHHHTTSCE-EEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHhCCCeE-EEEEECCCCCCHHHHHHHHhc
Confidence            34444443333 599999999999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.056  Score=48.39  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|++|+|||+|++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.92  E-value=0.29  Score=47.44  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      -..|+||+|+|||++|..++....
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHh
Confidence            467999999999999988887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=90.81  E-value=0.045  Score=52.25  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.||||||++++++..+
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            46799999999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.79  E-value=0.071  Score=49.61  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +..-|.|.|+-|+||||+++.|++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            334588999999999999999999873

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.045  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|||||||+++|+..+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46799999999999999999754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.027  Score=52.31  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      +-|.|.|+-|+||||+|+.|++.|.+
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45889999999999999999998643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.67  E-value=0.068  Score=48.92  Aligned_cols=22  Identities=41%  Similarity=0.697  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++||.|++|+|||++|..+...
T Consensus        16 gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            6999999999999999988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.65  E-value=0.061  Score=48.46  Aligned_cols=22  Identities=45%  Similarity=0.678  Sum_probs=18.1

Q ss_pred             CeEE-EEcCCCCcHHHHHHHHHH
Q 036742          380 PHIL-IKGQSGSGKRALAMALLH  401 (629)
Q Consensus       380 p~IL-L~GPPGtGKTtLAraLAk  401 (629)
                      |-|+ |+|++|+||||+|+.+..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            4444 999999999999998843

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.59  E-value=0.14  Score=50.94  Aligned_cols=29  Identities=28%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          376 DGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .++..-|=|.||||+|||||+..++..+.
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            34444566999999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.063  Score=50.01  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742          381 HILIKGQSGSGKRALAMALLHEIYG  405 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~g  405 (629)
                      -|.|.|+-|+||||+++.|++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            5789999999999999999998743

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.17  E-value=0.57  Score=46.77  Aligned_cols=125  Identities=11%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             HHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCC-------CCCC--CccccccccCCcceE---------
Q 036742          368 QLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGDACW-------NEKW--PTQVLVPVASSAHHV---------  428 (629)
Q Consensus       368 ~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~-------~~~~--~~~v~~~i~sS~~vl---------  428 (629)
                      +.++.++.. ..+++|.|.|..|.|||||+.++..........       -+..  ...-.+.+..+...+         
T Consensus         5 ~~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~   84 (341)
T d1n0ua2           5 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV   84 (341)
T ss_dssp             HHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred             HHHHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccc
Confidence            455556553 346789999999999999999998664211000       0000  000011111111111         


Q ss_pred             ------------EEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEE
Q 036742          429 ------------ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC  496 (629)
Q Consensus       429 ------------eInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILi  496 (629)
                                  .+|--+..|-.    +...++......   ..+.||++|=++.+.......++...+   .+.++|+.
T Consensus        85 ~~~~~~~~~~~~~inliDtPGh~----dF~~ev~~al~~---~D~allVVda~eGv~~qT~~~~~~a~~---~~~p~i~v  154 (341)
T d1n0ua2          85 KEIKQKTDGNSFLINLIDSPGHV----DFSSEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVV  154 (341)
T ss_dssp             HHCSSCCCSSEEEEEEECCCCCC----SSCHHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEE
T ss_pred             cchhccccccceEEEEEcCCCcH----HHHHHHHHHHhh---cCceEEEEecccCcchhHHHHHHHHHH---cCCCeEEE
Confidence                        12221211111    122233222222   234699999999999888888888776   35677777


Q ss_pred             ecCCcc
Q 036742          497 CEDDVD  502 (629)
Q Consensus       497 tN~~~~  502 (629)
                      -|..++
T Consensus       155 iNKiDr  160 (341)
T d1n0ua2         155 INKVDR  160 (341)
T ss_dssp             EECHHH
T ss_pred             EECccc
Confidence            775544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.11  E-value=0.047  Score=52.55  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.||||||++++|+..+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47799999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.09  E-value=0.075  Score=46.85  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|.|.|++|+|||||+++|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.02  E-value=0.059  Score=52.80  Aligned_cols=23  Identities=43%  Similarity=0.723  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++|+..+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            46799999999999999999865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.89  E-value=0.076  Score=48.62  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++||.||+|+|||++|..+...
T Consensus        17 gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            6999999999999999888753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.76  E-value=0.059  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|+|||||+++++..+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            47799999999999999999865

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.75  E-value=0.27  Score=42.81  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      ..+|+|||++-+... ...+...+..  .+..||+..
T Consensus        80 ~dvI~IDE~QFf~d~-i~~~~~~~~~--~g~~Viv~G  113 (139)
T d2b8ta1          80 TKVIGIDEVQFFDDR-ICEVANILAE--NGFVVIISG  113 (139)
T ss_dssp             CCEEEECSGGGSCTH-HHHHHHHHHH--TTCEEEEEC
T ss_pred             cCEEEechhhhcchh-HHHHHHHHHh--cCceEEEEE
Confidence            349999999999753 3334444432  345666654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.73  E-value=0.076  Score=47.00  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|+|.|+||+|||||..+|.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.092  Score=46.66  Aligned_cols=21  Identities=43%  Similarity=0.722  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|.+|+|||+|++.+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.063  Score=51.73  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+.|.||.|||||||+++|++.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            47899999999999999998864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.52  E-value=0.09  Score=47.73  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++||.|++|.|||++|..+...
T Consensus        17 gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            6999999999999999887765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.50  E-value=0.078  Score=46.71  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      -|+|.|++|+|||+|+..+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999987753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.43  E-value=0.37  Score=46.79  Aligned_cols=123  Identities=9%  Similarity=0.057  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------C--CCCccccccccCCcceEEE-----ecccchhhHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLHEIYGDACWN---------E--KWPTQVLVPVASSAHHVEL-----NVNLQANAKYAL  442 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~--~~~~~v~~~i~sS~~vleI-----nas~~~~~k~~l  442 (629)
                      +++|-|.|..|+|||||+.++...........         +  .-.....+.+..+...++.     |--+..|..   
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~---   82 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV---   82 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS---
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh---
Confidence            45899999999999999999987652111000         0  0000011122222222221     111222211   


Q ss_pred             HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc-------chHHHhhcc
Q 036742          443 MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD-------IIESVKTHC  511 (629)
Q Consensus       443 ~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~-------I~~aLrSR~  511 (629)
                       +++.++...+..   ....||+||=.+.+.......+....+   .+.+.|+..|..++       +++.|+.++
T Consensus        83 -dF~~e~~~~l~~---~D~avlVvda~~Gv~~~T~~~w~~a~~---~~lP~i~fINKmDr~~ad~~~~l~ei~~~l  151 (276)
T d2bv3a2          83 -DFTIEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEK---YKVPRIAFANKMDKTGADLWLVIRTMQERL  151 (276)
T ss_dssp             -SCSTTHHHHHHH---CCEEEEEEETTTSSCHHHHHHHHHHHT---TTCCEEEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred             -hhHHHHHHHHHh---hhheEEeccccCCcchhHHHHHHHHHH---cCCCEEEEEecccccccccchhHHHHHHHh
Confidence             111222222111   123599999999998877777666554   46666666666544       566677654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.05  E-value=0.12  Score=49.02  Aligned_cols=33  Identities=30%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++.|++++..   ...+|.|++|+|||||+.+|...
T Consensus        86 ~~~L~~~l~~---kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhcC---CeEEEECCCCCCHHHHHHhhcch
Confidence            4567777743   35789999999999999988654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.91  E-value=0.082  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|||||||+++|+..+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            46799999999999999998753

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.85  E-value=0.85  Score=39.65  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742          462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC  497 (629)
Q Consensus       462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit  497 (629)
                      .+|+|||++-+.......+..+.+   .+..||++.
T Consensus        82 dvI~IDE~QFf~d~~~~~~~~l~~---~g~~Viv~G  114 (141)
T d1xx6a1          82 EVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAG  114 (141)
T ss_dssp             SEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred             cEEEEeehhhccccHHHHHHhhee---CCcEEEEEE
Confidence            499999999998766665555543   345566654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.82  E-value=0.068  Score=52.63  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +.|-|-++|++|+||||++++|+..+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            456677999999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.042  Score=48.25  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742          382 ILIKGQSGSGKRALAMALLHEIYGD  406 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL~g~  406 (629)
                      .+|+||.|+|||++..||.-.|.+.
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g~   51 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIPD   51 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4688999999999999999887554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.38  E-value=1.1  Score=43.33  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .-++|.|++|+|||+|+..++...
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHH
Confidence            358999999999999999998874

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.26  Score=47.72  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      |..++..+..-+..+..-+-||+|..|+|||.+|-..+..+
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHH
Confidence            56677777777777766678999999999999988877654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.13  Score=45.50  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |+|.|.+|+|||+|+..+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.88  E-value=0.14  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      -|+|.|.+|||||+|+..++..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=87.86  E-value=0.55  Score=41.57  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +|-|.|.|++|||||..+|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            477999999999999999975

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.59  Score=40.21  Aligned_cols=22  Identities=27%  Similarity=0.234  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -+++||-.+|||+-....+..+
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHHH
Confidence            3678999999999666655543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.76  E-value=0.15  Score=48.41  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -++|.|+||+|||+++..+|..+
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhh
Confidence            47899999999999999998654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=87.54  E-value=0.095  Score=46.63  Aligned_cols=20  Identities=40%  Similarity=0.619  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALL  400 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLA  400 (629)
                      .|+|.|++|+|||+|++.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998764

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=87.41  E-value=3.5  Score=38.20  Aligned_cols=16  Identities=44%  Similarity=0.534  Sum_probs=14.3

Q ss_pred             eEEEEcCCCCcHHHHH
Q 036742          381 HILIKGQSGSGKRALA  396 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLA  396 (629)
                      ++++..|+|+|||...
T Consensus        60 dvvi~a~TGsGKTlay   75 (238)
T d1wrba1          60 DIMACAQTGSGKTAAF   75 (238)
T ss_dssp             CEEEECCTTSSHHHHH
T ss_pred             CEEEECCCCCCcceee
Confidence            7999999999999843

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.29  Score=46.21  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .+..-+..+...-|+++|.-|+||||++-.+|..+.
T Consensus        10 ~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          10 ALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             HHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344555566666788999999999999888888774

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.21  E-value=0.11  Score=48.83  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742          378 NCPHILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       378 ~~p~ILL~GPPGtGKTtLAraLAke  402 (629)
                      ++|-.+|+|.-|+||||+++.+.+.
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4677899999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=87.00  E-value=0.16  Score=46.62  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |-|+|++|+||||+|+.+..
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            45999999999999998763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=86.92  E-value=0.093  Score=45.97  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q 036742          379 CPHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       379 ~p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      .+.|.|.|+|++|||+|.++|..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999998854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=86.68  E-value=0.14  Score=48.91  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|+|||||+++|+..+
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36699999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.59  E-value=0.14  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +.|.|.|.||+|||||+.+|.+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4688999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=86.21  E-value=0.16  Score=46.46  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAk  401 (629)
                      |-|+|+.|+||||+|+.+..
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            34899999999999997753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.02  E-value=0.21  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      -|-|+|+.||||+|+|..|+..+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            36699999999999999998863

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.88  E-value=0.42  Score=52.15  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             hhhccCCCCCCcccccHHHH--HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          348 WADKHQPSSLNGFICHRHEA--QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~~--~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      |..+|+.....++.-|--.+  ...+.++..+....||+.|.+|+|||+.++.|.+.|.
T Consensus        53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            44555555555544343322  4567777777777899999999999999999998873

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.53  E-value=1.2  Score=42.75  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ++|.|.|+.|+|||||+.++....
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHc
Confidence            478899999999999999997653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.21  E-value=1.6  Score=44.15  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +|.|.|.||+|||+|+.+|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            799999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.11  E-value=0.19  Score=44.61  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q 036742          380 PHILIKGQSGSGKRALAMALLH  401 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAk  401 (629)
                      +.|-|.|+||+|||||+.+|.+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhC
Confidence            4578999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.05  E-value=0.18  Score=48.34  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      .+-|.||.|+|||||+++|+..+
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36799999999999999999864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.89  E-value=0.23  Score=50.14  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|+++.|++|+|||++++.++.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            4899999999999999987776654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.81  E-value=0.088  Score=45.48  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |.|.|.||+|||+|+.+|..+
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=84.79  E-value=0.21  Score=44.11  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|.|.|.+|+|||||+.++.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=84.00  E-value=0.19  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .+-|.||.|+|||||.++++..
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4669999999999999999873

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.54  E-value=0.62  Score=51.00  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=41.1

Q ss_pred             hhhccCCCCCCcccccHHH--HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          348 WADKHQPSSLNGFICHRHE--AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~~--~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +..+|+.....++.-|--+  -...+.++..+....||+.|.+|+|||..++.|.+.|.
T Consensus        92 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2          92 MVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3455665555555444332  24566777777777899999999999999999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.44  E-value=0.28  Score=43.61  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMAL  399 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraL  399 (629)
                      |+|.|.+|+|||+|++.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999998

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=0.41  Score=45.27  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          380 PHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       380 p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +-++|+|.-|+||||+|-++|..+.
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA   33 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLA   33 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHH
Confidence            4577999999999999999998874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=82.76  E-value=0.24  Score=49.53  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          381 HILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      .|.|-|+-|+||||+++.+++.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            478999999999999999999863

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.37  Score=42.89  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAke  402 (629)
                      .|++.|.+|+|||+|+..+...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988764

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.13  E-value=0.84  Score=49.87  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=40.3

Q ss_pred             hhccCCCCCCcccccHH--HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          349 ADKHQPSSLNGFICHRH--EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       349 ~eKyrP~tfddIiG~e~--~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      ...|+-....++.-|--  +-...+.++..+....||+.|.+|+|||+.++.|.+.|.
T Consensus        59 ~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          59 IDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34555555555543433  234567777777777899999999999999999998873

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.72  E-value=0.8  Score=50.20  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             hhhccCCCCCCcccccHH--HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742          348 WADKHQPSSLNGFICHRH--EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       348 W~eKyrP~tfddIiG~e~--~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      +..+|+-....++.-|--  +-...+.++..+....|||.|.+|+|||..++.+.+.|
T Consensus        61 ~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          61 IINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344555555555543433  33456777777777789999999999999999998876

>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.06  E-value=6.3  Score=33.04  Aligned_cols=123  Identities=10%  Similarity=0.041  Sum_probs=73.4

Q ss_pred             HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742          369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE  448 (629)
Q Consensus       369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre  448 (629)
                      .|...++.|-.|..||+|+---=.......|-..+...+...                ...+.......        +.+
T Consensus         8 ~L~~~l~k~l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~--------~~~   63 (140)
T d1jqlb_           8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE----------------HHTFSIDPNTD--------WNA   63 (140)
T ss_dssp             GHHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCE----------------EECCCCSTTCC--------HHH
T ss_pred             HHHHHHhcCCCcEEEEEcChHHHHHHHHHHHHHHHHhCCcce----------------eeeecccccCC--------HHH
Confidence            466667777567788999988888888887777664443200                00000011111        122


Q ss_pred             HHHHhccCcC-CCCeEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecCCcc------chHHHhhcceEee
Q 036742          449 IRDNLAITPE-VSNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDVD------IIESVKTHCKVIK  515 (629)
Q Consensus       449 i~~~~~~~~~-~~~kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~~~~------I~~aLrSR~~~I~  515 (629)
                      +.......+- ...++|+|++.+.. .....+.|..+++.+...+.+|+++.....      +..+|..+..+|.
T Consensus        64 l~~~~~t~slF~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~  138 (140)
T d1jqlb_          64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT  138 (140)
T ss_dssp             HHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEE
T ss_pred             HHHHHcCCCcccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHHHhCCeEEe
Confidence            2222222222 23569999988765 456677888999988888888888875433      3455555555554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.96  E-value=0.41  Score=42.18  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 036742          382 ILIKGQSGSGKRALAMALLHE  402 (629)
Q Consensus       382 ILL~GPPGtGKTtLAraLAke  402 (629)
                      |+|.|..|+|||+|++.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.92  E-value=0.97  Score=50.01  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             ccCCCCCCcccccHHH--HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742          351 KHQPSSLNGFICHRHE--AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY  404 (629)
Q Consensus       351 KyrP~tfddIiG~e~~--~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~  404 (629)
                      +|+-....++.-|--+  -...+.++..+....||+.|.+|+|||..++.|.+.|.
T Consensus        93 ~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2          93 AYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4444444554434332  24577777777777899999999999999999998873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.75  E-value=0.47  Score=44.89  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Q 036742          381 HILIKGQSGSGKRALAMALLHEI  403 (629)
Q Consensus       381 ~ILL~GPPGtGKTtLAraLAkeL  403 (629)
                      ..+|.|++|+|||||+.+|....
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            46788999999999999887653