Citrus Sinensis ID: 036775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccEEEEEccEEc
Secondary Structure Prediction (SSPRO)
cccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEcc
Coil and Loop (DISEMBL)
MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEktkeaepneATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIingvfpddVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRihrndemfdPIRQELVNKKGVSVGTFALMSntfagadrwEDANKIRDEIRRMglkkktgcswievnpsif
Flexible Loop (DISEMBL)
mpkrdvvswttmiggyaergFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMsntfagadrwedaNKIRDEIrrmglkkktgcswievnpsif
Low Complexity Region (SEG)
MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF
Disordered region (IsUnstruct)
*****VVSWTTMIGGYAERGFCEEAVSVFQ************ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV*****
Disordered Region (DISOPRED)
*PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF
Disordered Region (DISEMBL)
MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF
Disordered Region (DISPRO)
***RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q9FIF7	544	Putative pentatricopeptid	yes	no	0.993	0.534	0.419	1e-68
O82380	738	Pentatricopeptide repeat-	no	no	0.982	0.390	0.425	5e-67
Q9LS72	600	Pentatricopeptide repeat-	no	no	0.989	0.483	0.393	4e-64
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.993	0.334	0.386	6e-64
Q9SJZ3	681	Pentatricopeptide repeat-	no	no	0.979	0.421	0.394	2e-63
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.976	0.366	0.406	5e-63
Q9FMA1	530	Pentatricopeptide repeat-	no	no	0.979	0.541	0.405	1e-61
Q9SX45	596	Pentatricopeptide repeat-	no	no	0.979	0.481	0.391	2e-61
Q9FG16	622	Pentatricopeptide repeat-	no	no	0.989	0.466	0.397	2e-61
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.976	0.336	0.399	5e-61

>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 31/322 (9%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQ---------------------EMEKTKE-- 37
           MP RD V+ T MI  Y+E GF +EA+ +FQ                     EM K  E  
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243

Query: 38  -------AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
                     NE T V VLSACS + AL  G++VHS++  +  + +SN VGNA+INMY +
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR-MELSNFVGNALINMYSR 302

Query: 91  CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
           CGD+  A +VF ++  KD+IS++T+ISGLAM+G   +A+  F  M+  G  P+ VT +AL
Sbjct: 303 CGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVAL 362

Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
           ++ACSHGGL+D GL +F +M  V+ + PQ +HY C+VD+ GR G LEEA  FI  +PIE 
Sbjct: 363 LNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEP 422

Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
           +  + G LL+AC+IH N E+ + I + L   +    GT+ L+SN +A + +W+++ +IR+
Sbjct: 423 DHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRE 482

Query: 271 EIRRMGLKKKTGCSWIEVNPSI 292
            +R  G++K+ GCS IEV+  I
Sbjct: 483 SMRDSGIEKEPGCSTIEVDNQI 504

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/289 (42%), Positives = 186/289 (64%), Gaps = 1/289 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP++D+V+W  +I  Y + G   EA+ VF E++  K  + N+ TLV+ LSAC+ + AL  
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+++HSYI  ++ + ++  V +A+I+MY KCGD+  + +VFN +  +D+  WS +I GLA
Sbjct: 384 GRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           M+GCG +A+ +F  M    V P+ VTF  +  ACSH GLVD+   LF  M + Y IVP+ 
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEE 502

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HYAC+VD+ GR+G LE+A  FI  MPI    SVWGALL AC+IH N  + +     L+ 
Sbjct: 503 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
            +  + G   L+SN +A   +WE+ +++R  +R  GLKK+ GCS IE++
Sbjct: 563 LEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1

 Score =  245 bits (625), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 189/292 (64%), Gaps = 2/292 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           +P ++VV+WT +I GYAE+G  +EA  +  +M  +   + + A ++++L+AC+    LS 
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-LKFDAAAVISILAACTESGLLSL 333

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G  +HS I  R +L  +  V NA+++MY KCG++  A  VFN +  KD++SW+T++ GL 
Sbjct: 334 GMRIHS-ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           ++G G++A++LFS M   G+ PD VTFIA++ +C+H GL+D+G+  F +M  VY++VPQ 
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQV 452

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HY C+VD+ GR G L+EA   ++ MP+E    +WGALL ACR+H   ++   +   LV 
Sbjct: 453 EHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVK 512

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
                 G ++L+SN +A A+ WE    IR +++ MG++K +G S +E+   I
Sbjct: 513 LDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  244 bits (623), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 185/292 (63%), Gaps = 1/292 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M  +D++SW T+IGGY++  +  EA+S+F  + + K   P+E T+  VL AC+S+SA   
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+ +H YI  R        V N++++MY KCG + +A  +F+ +A KD++SW+ +I+G  
Sbjct: 518 GREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           M+G G++A+ LF+ M   G+  D+++F++L+ ACSH GLVD+G   F  M    +I P  
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HYAC+VDM  R G L +A  FI  MPI  + ++WGALL  CRIH + ++ + + +++  
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
            +  + G + LM+N +A A++WE   ++R  I + GL+K  GCSWIE+   +
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 187/289 (64%), Gaps = 2/289 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M ++DVV W  MIGG  +    ++A+++FQEM+ T   +P+E T+++ LSACS + AL  
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ-TSNTKPDEITMIHCLSACSQLGALDV 407

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G ++H YI  +Y LS++  +G ++++MY KCG++  A+ VF+ +  ++ ++++ +I GLA
Sbjct: 408 GIWIHRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           ++G    A+  F+ MI  G+ PD++TFI L+SAC HGG++  G   F  M + + + PQ 
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HY+ +VD+ GRAGLLEEA+  +  MP+EA+ +VWGALL  CR+H N E+ +   ++L+ 
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLE 586

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
                 G + L+   +  A+ WEDA + R  +   G++K  GCS IEVN
Sbjct: 587 LDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  241 bits (615), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 178/288 (61%), Gaps = 2/288 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MPKRD VSW  MI GY++ G   EA+ +F +ME+ +    N ++  + LS C+ + AL  
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER-EGGRLNRSSFSSALSTCADVVALEL 427

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+ +H  +  +        VGNA++ MY KCG +  A  +F  +A KD++SW+T+I+G +
Sbjct: 428 GKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 486

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
            +G G  AL+ F  M   G+ PDD T +A++SACSH GLVD+G   F  M+  Y ++P +
Sbjct: 487 RHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNS 546

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           QHYAC+VD+ GRAGLLE+A   ++ MP E + ++WG LL A R+H N E+ +    ++  
Sbjct: 547 QHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 606

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
            +  + G + L+SN +A + RW D  K+R  +R  G+KK  G SWIE+
Sbjct: 607 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 190/291 (65%), Gaps = 4/291 (1%)

Query: 4   RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
           R+ VSWT +I GYA+ G   EA+ VFQ M   +  EP+E TL+ VLSAC+ + +L  G+ 
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACADLGSLELGER 271

Query: 64  VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
           + SY+  R  + +VS  + NAVI+MY K G++  A+ VF  +  +++++W+T+I+GLA +
Sbjct: 272 ICSYVDHRGMNRAVS--LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATH 329

Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
           G G +AL +F+ M+  GV P+DVTFIA++SACSH G VD G  LF +M + Y I P  +H
Sbjct: 330 GHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEH 389

Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
           Y C++D+ GRAG L EA+  I+ MP +A  ++WG+LL A  +H + E+ +    EL+  +
Sbjct: 390 YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLE 449

Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
             + G + L++N ++   RW+++  +R+ ++ +G+KK  G S IEV   ++
Sbjct: 450 PNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVY 500

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP R+VV+WT +I GY +    ++ + VF+EM K+  A PNE TL +VLSAC+ + AL  
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+ VH Y+  +  + ++   G  +I++YVKCG +  AI VF  L  K++ +W+ +I+G A
Sbjct: 325 GRRVHCYM-IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
            +G  R A  LF  M+ + V P++VTF+A++SAC+HGGLV++G  LF +M   + + P+ 
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKA 443

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
            HYAC+VD++GR GLLEEA+A I  MP+E    VWGAL  +C +H++ E+       ++ 
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
            +    G + L++N ++ +  W++  ++R +++   + K  G SWIEV 
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 187/292 (64%), Gaps = 2/292 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP R++ +W+ MI GYA+    E+A+ +F+ M K +    NE  +V+V+S+C+ + AL F
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM-KREGVVANETVMVSVISSCAHLGALEF 267

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+  + Y+  +  ++V+ ++G A+++M+ +CGD+  AI VF  L   D +SWS++I GLA
Sbjct: 268 GERAYEYV-VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           ++G   +A+  FS MI  G  P DVTF A++SACSHGGLV++GL +++ M   + I P+ 
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRL 386

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HY C+VDM GRAG L EAE FI +M ++    + GALL AC+I++N E+ + +   L+ 
Sbjct: 387 EHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK 446

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
            K    G + L+SN +A A +W+    +RD ++   +KK  G S IE++  I
Sbjct: 447 VKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  234 bits (597), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 2/288 (0%)

Query: 2   PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
           PK RDVV+WT MIGGY++ G   +A+ +  EM E+  +  PN  T+   L AC+S++AL 
Sbjct: 435 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALR 494

Query: 60  FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
            G+ +H+Y       +V   V N +I+MY KCG +  A  VF+ +  K+ ++W+++++G 
Sbjct: 495 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGY 554

Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
            M+G G +AL +F  M   G   D VT + ++ ACSH G++DQG+  F  M TV+ + P 
Sbjct: 555 GMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG 614

Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
            +HYAC+VD+ GRAG L  A   I EMP+E    VW A L+ CRIH   E+ +   +++ 
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 674

Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
                  G++ L+SN +A A RW+D  +IR  +R  G+KK+ GCSW+E
Sbjct: 675 ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
296083914	541	unnamed protein product [Vitis vinifera]	0.976	0.528	0.691	1e-119
147788829	725	hypothetical protein VITISV_018159 [Viti	0.976	0.394	0.688	1e-118
449442521	517	PREDICTED: pentatricopeptide repeat-cont	0.979	0.555	0.641	1e-112
449476231	472	PREDICTED: pentatricopeptide repeat-cont	0.962	0.597	0.649	1e-111
356555244	521	PREDICTED: pentatricopeptide repeat-cont	0.969	0.545	0.6	3e-98
357446587	528	Pentatricopeptide repeat-containing prot	0.976	0.541	0.578	5e-96
217074958	515	unknown [Medicago truncatula] gi|3885214	0.976	0.555	0.574	5e-95
356546651	293	PREDICTED: pentatricopeptide repeat-cont	0.924	0.924	0.588	2e-93
225456890	698	PREDICTED: pentatricopeptide repeat-cont	0.976	0.409	0.444	1e-70
359478743	642	PREDICTED: pentatricopeptide repeat-cont	0.993	0.453	0.450	4e-70

>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 241/292 (82%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M +RDV+SWTTM+GG A+ G CEEAV VFQ M K  EA PNE TLVNVL+ACSS+SAL+ 
Sbjct: 235 MFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNL 294

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G++VHSYISTRYDL V   VGNA+INMY KC D+ +A++VFN L +KDMISWST+I G+A
Sbjct: 295 GRWVHSYISTRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMA 354

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MNG G  ALQ FSLM+++GV PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQ 
Sbjct: 355 MNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQM 414

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           QHYAC+VDMYGRAGLLEEAEAFIR MP+EAE  +WGALLNAC+IH N++MF  I Q L N
Sbjct: 415 QHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGRIDQSLRN 474

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
            KGVS+GT AL+SNT+A ++RW+DANK+RD +R MGLKK +GCSWIEV+  I
Sbjct: 475 AKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/292 (68%), Positives = 240/292 (82%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M +RDV+SWTTM+GG A+ G CEEAV VFQ M K  EA PNE TLVNVL+ACSS+SAL+ 
Sbjct: 169 MFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNL 228

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G++VHSYIS RYDL V   VGNA+INMY KC D+ +A++VFN L +KDMISWST+I G+A
Sbjct: 229 GRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMA 288

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MNG G  ALQ FSLM+++GV PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQ 
Sbjct: 289 MNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQM 348

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           QHYAC+VDMYGRAGLLEEAEAFIR MP+EAE  +WGALLNAC+IH N++MF  I Q L N
Sbjct: 349 QHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGXIBQSLRN 408

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
            KGVS+GT AL+SNT+A ++RW+DANK+RD +R MGLKK +GCSWIEV+  I
Sbjct: 409 AKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like isoform 1 [Cucumis sativus] gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like isoform 2 [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 241/293 (82%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MPKRDVVSWTTMIGGYA+ G CEEAV VFQ M    EA PNEATLVNVLSACSSISAL  
Sbjct: 222 MPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHL 281

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           GQ+VHSYI++R+D+ +   VGNA+INMYVKCG++ +AI +F  + +KD++SWST+ISGLA
Sbjct: 282 GQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLA 341

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MNG G+QA  LFSLM+++GV PDD+TF+ L+SACSHGGL++QG+++F+AM  VY I PQ 
Sbjct: 342 MNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQM 401

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HYAC+VDMYG+AGLL+EAEAFI+EMP+EAE  VWGALL+AC++H N++ ++ +R+ L+ 
Sbjct: 402 RHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLG 461

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
            KGV+VGTFAL+SNT+A  DRW DAN +R  +R  GLKK  G SWIE+  S +
Sbjct: 462 SKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSTY 514

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like, partial [Cucumis sativus]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 238/288 (82%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MPKRDVVSWTTMIGGYA+ G CEEAV VFQ M    EA PNEATLVNVLSACSSISAL  
Sbjct: 177 MPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHL 236

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           GQ+VHSYI++R+D+ +   VGNA+INMYVKCG++ +AI +F    +KD++SWST+ISGLA
Sbjct: 237 GQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLA 296

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MNG G+QA  LFSLM+++G+ PDDVTF+ L+SACSHGGL++QG+++F+AM  VY I PQ 
Sbjct: 297 MNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQM 356

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HYAC+VDMYG+AGLL+EAEAFI+EMP+EAE  VWGALL+AC++H N++ ++ +R+ L+ 
Sbjct: 357 RHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLG 416

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
            KGV+VGTFAL+SNT+A  DRW DAN +R  +R  GLKK  G SWIE+
Sbjct: 417 SKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEM 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/285 (60%), Positives = 219/285 (76%), Gaps = 1/285 (0%)

Query: 4   RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
           RDVVSWTT++ GYA  G+CEEA +VF+ M    EAEPNEAT+V VLSA +SI ALS GQ+
Sbjct: 224 RDVVSWTTLLMGYARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQW 283

Query: 64  VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
           VHSYI +RYDL V   + NA++NMYVKCGD+ + ++VF+M+ +KD ISW TVI GLAMNG
Sbjct: 284 VHSYIDSRYDLVVDGNIENALLNMYVKCGDMQMGLRVFDMIVHKDAISWGTVICGLAMNG 343

Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
             ++ L+LFS M++  V PDDVTFI ++SACSH GLV++G++ FKAM   Y IVPQ +HY
Sbjct: 344 YEKKTLELFSRMLVEVVEPDDVTFIGVLSACSHAGLVNEGVMFFKAMRDFYGIVPQMRHY 403

Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
            C+VDMYGRAGLLEEAEAF+R MP+EAE  +WGALL AC+IH N++M + I   L   K 
Sbjct: 404 GCMVDMYGRAGLLEEAEAFLRSMPVEAEGPIWGALLQACKIHGNEKMSEWIMGHL-KGKS 462

Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
           V VGT AL+SN +A ++RW+DANK+R  +R   LKK  GCSW+E+
Sbjct: 463 VGVGTLALLSNMYASSERWDDANKVRKSMRGTRLKKVAGCSWVEL 507

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  356 bits (914), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 166/287 (57%), Positives = 216/287 (75%), Gaps = 1/287 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M KRDV+SWTT++  YA  G C EAV VF++M  + EAEPNE+T+V VLSAC+SI +LS 
Sbjct: 218 MSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSL 277

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G +VH YI  R DL V   +GNA++NMYVKCGD+ + ++VFNM+ +KD+ISW TVI GLA
Sbjct: 278 GCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLA 337

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MNG G+Q +Q+FS M+++GV PDDVTFI L+SACSH GLV +G++ FKAM   Y IVPQ 
Sbjct: 338 MNGYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQM 397

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
            HY C+VDMYGRA L EEA AF++ MP+EAE  +W ALL AC+ H N+EM + IR + ++
Sbjct: 398 SHYGCMVDMYGRASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IH 456

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
            K V VGT AL+SN +A ++RW+DAN +R  +R  GLKK  G SW+E
Sbjct: 457 DKNVGVGTLALLSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula] gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 165/287 (57%), Positives = 215/287 (74%), Gaps = 1/287 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M KRDV+SWTT++  YA  G C EAV VF++M  + EAEPNE+T+V VLSAC+SI +LS 
Sbjct: 218 MSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSL 277

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G +VH YI  R DL V   +GNA++NMYVKCGD+ + ++VFNM+ +KD+ISW TVI GLA
Sbjct: 278 GCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLA 337

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           MN  G+Q +Q+FS M+++GV PDDVTFI L+SACSH GLV +G++ FKAM   Y IVPQ 
Sbjct: 338 MNEYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQM 397

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
            HY C+VDMYGRA L EEA AF++ MP+EAE  +W ALL AC+ H N+EM + IR + ++
Sbjct: 398 SHYGCMVDMYGRASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IH 456

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
            K V VGT AL+SN +A ++RW+DAN +R  +R  GLKK  G SW+E
Sbjct: 457 DKNVGVGTLALLSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546651|ref|XP_003541737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/272 (58%), Positives = 209/272 (76%), Gaps = 1/272 (0%)

Query: 20  GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL 79
           G+CEEA +VF+ M  ++EAEPNEAT+V VLSAC+SI  LS GQ+VHSYI +R+DL V   
Sbjct: 12  GYCEEAFAVFKRMVLSEEAEPNEATIVTVLSACASIGTLSLGQWVHSYIDSRHDLVVDEN 71

Query: 80  VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
           +GNA++NMYVKCGD+ +  +VF+M+ +KD+ISW T I GLAMNG  R  L+LFS M++ G
Sbjct: 72  IGNALLNMYVKCGDMQMGFRVFDMIVHKDVISWGTFICGLAMNGYERNTLELFSRMLVEG 131

Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
           V PD+VTFI ++SACSH GL+++G++ FKAM   Y IVPQ +HY C+VDMYGRAGL EEA
Sbjct: 132 VEPDNVTFIGVLSACSHAGLLNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLFEEA 191

Query: 200 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259
           EA +R MP+EAE  +WGALL AC+IHRN++M + IR  L   K V VGT AL+SN +A +
Sbjct: 192 EALLRRMPVEAEGPIWGALLQACKIHRNEKMSEWIRGHL-KGKSVGVGTLALLSNMYASS 250

Query: 260 DRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
           +RW+DA K+R  +R  GLKK  GCSW+E+  S
Sbjct: 251 ERWDDAKKVRKSMRGTGLKKVAGCSWVELEMS 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 198/290 (68%), Gaps = 4/290 (1%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           M +RDVV+W+ MI GY++   C EA+ +F EM+K    +PNE T+V++LS+C+ + AL  
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN-IDPNEITMVSILSSCAVLGALET 344

Query: 61  GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
           G++VH +I   R  L+V+  +G A+++ Y KCG V  +I+VF  +  K+++SW+ +I GL
Sbjct: 345 GKWVHFFIKKKRMKLTVT--LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGL 402

Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
           A NG G++AL+ F LM+   V P+DVTFI ++SACSH GLVD+G  LF +MS  + I P+
Sbjct: 403 ASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPR 462

Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
            +HY C+VD+ GRAGL+EEA  FI+ MPI+    +W  LL +C++H+N E+ +   ++L+
Sbjct: 463 IEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLI 522

Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
             +    G + L+SN +A   RWEDA K+R E++  G+KK  GCS IE++
Sbjct: 523 ILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELD 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/293 (45%), Positives = 193/293 (65%), Gaps = 2/293 (0%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP +DVV W  MIGGY      +EA+++F EM+      P+E T+V+ LSACS + AL  
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 358

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G ++H YI  +++LS++  +G A+I+MY KCG +  AIQVF  L  ++ ++W+ +ISGLA
Sbjct: 359 GIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 417

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
           ++G    A+  FS MI N V PD+VTF+ L+SAC HGGLV++G   F  MS+ + + P+ 
Sbjct: 418 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 477

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HY+C+VD+ GRAGLLEEAE  I+ MPIEA+  VWGAL  ACRIH N  M +    +L+ 
Sbjct: 478 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 537

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
                 G + L++N +  A+ W++A K R  +R+ G++K  GCS IEVN  ++
Sbjct: 538 MDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVY 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2060640	738	OTP81 "ORGANELLE TRANSCRIPT PR	0.993	0.394	0.424	3e-62
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.979	0.387	0.391	7.1e-61
TAIR|locus:2041198	681	SLO1 "SLOW GROWTH 1" [Arabidop	0.972	0.418	0.402	5e-60
TAIR|locus:2094812	600	AT3G29230 "AT3G29230" [Arabido	0.989	0.483	0.390	5e-60
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.979	0.329	0.392	5.5e-60
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.976	0.366	0.406	1e-59
TAIR|locus:2010012	474	AT1G13410 "AT1G13410" [Arabido	0.996	0.616	0.397	5.7e-59
TAIR|locus:2161018	530	AT5G56310 "AT5G56310" [Arabido	0.979	0.541	0.405	1.9e-58
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.976	0.363	0.402	3.2e-58
TAIR|locus:2144143	622	AT5G06540 [Arabidopsis thalian	0.989	0.466	0.397	6.6e-58

TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 124/292 (42%), Positives = 187/292 (64%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             MP++D+V+W  +I  Y + G   EA+ VF E++  K  + N+ TLV+ LSAC+ + AL  
Sbjct:   324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G+++HSYI  ++ + ++  V +A+I+MY KCGD+  + +VFN +  +D+  WS +I GLA
Sbjct:   384 GRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
             M+GCG +A+ +F  M    V P+ VTF  +  ACSH GLVD+   LF  M + Y IVP+ 
Sbjct:   443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEE 502

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             +HYAC+VD+ GR+G LE+A  FI  MPI    SVWGALL AC+IH N  + +     L+ 
Sbjct:   503 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
              +  + G   L+SN +A   +WE+ +++R  +R  GLKK+ GCS IE++  I
Sbjct:   563 LEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 114/291 (39%), Positives = 186/291 (63%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             +P +DV+SW T+IGGY      +EA+ +FQEM ++ E  PN+ T++++L AC+ + A+  
Sbjct:   327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDI 385

Query:    61 GQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
             G+++H YI  R    V+N   +  ++I+MY KCGD+  A QVFN + +K + SW+ +I G
Sbjct:   386 GRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444

Query:   119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
              AM+G    +  LFS M   G+ PDD+TF+ L+SACSH G++D G  +F+ M+  Y++ P
Sbjct:   445 FAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTP 504

Query:   179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
             + +HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H N E+ +   + L
Sbjct:   505 KLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENL 564

Query:   239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
             +  +  + G++ L+SN +A A RW +  K R  +   G+KK  GCS IE++
Sbjct:   565 IKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/291 (40%), Positives = 190/291 (65%)

Query:     1 MPKRDVVSWTTMIGG--YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
             M ++DVV W  MIGG   A+RG  ++A+++FQEM+ T   +P+E T+++ LSACS + AL
Sbjct:   349 MEEKDVVLWNAMIGGSVQAKRG--QDALALFQEMQ-TSNTKPDEITMIHCLSACSQLGAL 405

Query:    59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
               G ++H YI  +Y LS++  +G ++++MY KCG++  A+ VF+ +  ++ ++++ +I G
Sbjct:   406 DVGIWIHRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGG 464

Query:   119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
             LA++G    A+  F+ MI  G+ PD++TFI L+SAC HGG++  G   F  M + + + P
Sbjct:   465 LALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNP 524

Query:   179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
             Q +HY+ +VD+ GRAGLLEEA+  +  MP+EA+ +VWGALL  CR+H N E+ +   ++L
Sbjct:   525 QLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKL 584

Query:   239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
             +       G + L+   +  A+ WEDA + R  +   G++K  GCS IEVN
Sbjct:   585 LELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 114/292 (39%), Positives = 189/292 (64%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             +P ++VV+WT +I GYAE+G  +EA  +  +M  +   + + A ++++L+AC+    LS 
Sbjct:   275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-LKFDAAAVISILAACTESGLLSL 333

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G  +HS +  R +L  +  V NA+++MY KCG++  A  VFN +  KD++SW+T++ GL 
Sbjct:   334 GMRIHSILK-RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
             ++G G++A++LFS M   G+ PD VTFIA++ +C+H GL+D+G+  F +M  VY++VPQ 
Sbjct:   393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQV 452

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             +HY C+VD+ GR G L+EA   ++ MP+E    +WGALL ACR+H   ++   +   LV 
Sbjct:   453 EHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVK 512

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
                   G ++L+SN +A A+ WE    IR +++ MG++K +G S +E+   I
Sbjct:   513 LDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.5e-60, P = 5.5e-60
 Identities = 113/288 (39%), Positives = 185/288 (64%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             M  +D++SW T+IGGY++  +  EA+S+F  + + K   P+E T+  VL AC+S+SA   
Sbjct:   458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G+ +H YI      S  + V N++++MY KCG + +A  +F+ +A KD++SW+ +I+G  
Sbjct:   518 GREIHGYIMRNGYFSDRH-VANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
             M+G G++A+ LF+ M   G+  D+++F++L+ ACSH GLVD+G   F  M    +I P  
Sbjct:   577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             +HYAC+VDM  R G L +A  FI  MPI  + ++WGALL  CRIH + ++ + + +++  
Sbjct:   637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
              +  + G + LM+N +A A++WE   ++R  I + GL+K  GCSWIE+
Sbjct:   697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 744

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 117/288 (40%), Positives = 178/288 (61%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             MPKRD VSW  MI GY++ G   EA+ +F +ME+ +    N ++  + LS C+ + AL  
Sbjct:   369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER-EGGRLNRSSFSSALSTCADVVALEL 427

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G+ +H  +  +        VGNA++ MY KCG +  A  +F  +A KD++SW+T+I+G +
Sbjct:   428 GKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 486

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
              +G G  AL+ F  M   G+ PDD T +A++SACSH GLVD+G   F  M+  Y ++P +
Sbjct:   487 RHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNS 546

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             QHYAC+VD+ GRAGLLE+A   ++ MP E + ++WG LL A R+H N E+ +    ++  
Sbjct:   547 QHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 606

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
              +  + G + L+SN +A + RW D  K+R  +R  G+KK  G SWIE+
Sbjct:   607 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 116/292 (39%), Positives = 182/292 (62%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             MP+R+V SW  +I GYA+ G   E +  F+ M       PN+AT+  VLSAC+ + A  F
Sbjct:   147 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 206

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G++VH Y  T     V   V NA+I+MY KCG + IA++VF  +  +D+ISW+T+I+GLA
Sbjct:   207 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 266

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
              +G G +AL LF  M  +G+ PD VTF+ ++ AC H GLV+ GL  F +M T + I+P+ 
Sbjct:   267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 326

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             +H  CVVD+  RAG L +A  FI +MP++A+  +W  LL A ++++  ++ +   +EL+ 
Sbjct:   327 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 386

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
              +  +   F ++SN +  A R++DA +++  +R  G KK+ G SWIE +  +
Sbjct:   387 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGL 438

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/291 (40%), Positives = 190/291 (65%)

Query:     4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
             R+ VSWT +I GYA+ G   EA+ VFQ M   +  EP+E TL+ VLSAC+ + +L  G+ 
Sbjct:   213 RNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACADLGSLELGER 271

Query:    64 VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
             + SY+  R  + +VS  + NAVI+MY K G++  A+ VF  +  +++++W+T+I+GLA +
Sbjct:   272 ICSYVDHRGMNRAVS--LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATH 329

Query:   123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
             G G +AL +F+ M+  GV P+DVTFIA++SACSH G VD G  LF +M + Y I P  +H
Sbjct:   330 GHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEH 389

Query:   183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
             Y C++D+ GRAG L EA+  I+ MP +A  ++WG+LL A  +H + E+ +    EL+  +
Sbjct:   390 YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLE 449

Query:   243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
               + G + L++N ++   RW+++  +R+ ++ +G+KK  G S IEV   ++
Sbjct:   450 PNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVY 500

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 117/291 (40%), Positives = 188/291 (64%)

Query:     4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
             RDVV+WT MI GY + G   EA+++F+ M    +  PN  TL  +LS  SS+++LS G+ 
Sbjct:   376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSVASSLASLSHGKQ 434

Query:    64 VH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISGLAM 121
             +H S + +    SVS  V NA+I MY K G++  A + F+++   +D +SW+++I  LA 
Sbjct:   435 IHGSAVKSGEIYSVS--VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQ 492

Query:   122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
             +G   +AL+LF  M++ G+ PD +T++ + SAC+H GLV+QG   F  M  V +I+P   
Sbjct:   493 HGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLS 552

Query:   182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
             HYAC+VD++GRAGLL+EA+ FI +MPIE +   WG+LL+ACR+H+N ++     + L+  
Sbjct:   553 HYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL 612

Query:   242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
             +  + G ++ ++N ++   +WE+A KIR  ++   +KK+ G SWIEV   +
Sbjct:   613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 116/292 (39%), Positives = 187/292 (64%)

Query:     1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
             MP R++ +W+ MI GYA+    E+A+ +F+ M K +    NE  +V+V+S+C+ + AL F
Sbjct:   209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM-KREGVVANETVMVSVISSCAHLGALEF 267

Query:    61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
             G+  + Y+  +  ++V+ ++G A+++M+ +CGD+  AI VF  L   D +SWS++I GLA
Sbjct:   268 GERAYEYV-VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326

Query:   121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
             ++G   +A+  FS MI  G  P DVTF A++SACSHGGLV++GL +++ M   + I P+ 
Sbjct:   327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRL 386

Query:   181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
             +HY C+VDM GRAG L EAE FI +M ++    + GALL AC+I++N E+ + +   L+ 
Sbjct:   387 EHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK 446

Query:   241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
              K    G + L+SN +A A +W+    +RD ++   +KK  G S IE++  I
Sbjct:   447 VKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017291001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (555 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-83
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-65
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-38
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-31
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-26
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-14
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-08
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  266 bits (682), Expect = 4e-83
 Identities = 122/288 (42%), Positives = 183/288 (63%), Gaps = 4/288 (1%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           +P++DV+SWT++I G      C EA+  F++M  T   +PN  TL+  LSAC+ I AL  
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMC 507

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+ +H+++  R  +     + NA++++YV+CG +  A   FN    KD++SW+ +++G  
Sbjct: 508 GKEIHAHV-LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYV 565

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
            +G G  A++LF+ M+ +GV PD+VTFI+L+ ACS  G+V QGL  F +M   Y I P  
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625

Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
           +HYACVVD+ GRAG L EA  FI +MPI  + +VWGALLNACRIHR+ E+ +   Q +  
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685

Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
               SVG + L+ N +A A +W++  ++R  +R  GL    GCSW+EV
Sbjct: 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  217 bits (554), Expect = 1e-65
 Identities = 100/290 (34%), Positives = 171/290 (58%), Gaps = 6/290 (2%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP++  V+W +M+ GYA  G+ EEA+ ++ EM  +     ++ T   ++   S ++ L  
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEH 343

Query: 61  GQYVH-SYISTRYDLSVSNLVGN-AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
            +  H   I T + L +   V N A++++Y K G +  A  VF+ +  K++ISW+ +I+G
Sbjct: 344 AKQAHAGLIRTGFPLDI---VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400

Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
              +G G +A+++F  MI  GV P+ VTF+A++SAC + GL +QG  +F++MS  + I P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460

Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
           +  HYAC++++ GR GLL+EA A IR  P +   ++W ALL ACRIH+N E+     ++L
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520

Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
                  +  + ++ N +  + R  +A K+ + ++R GL     C+WIEV
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  142 bits (359), Expect = 6e-38
 Identities = 81/259 (31%), Positives = 137/259 (52%), Gaps = 15/259 (5%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP+RD +SW  MI GY E G C E + +F  M +    +P+  T+ +V+SAC  +     
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERL 306

Query: 61  GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
           G+ +H Y + T + + VS  V N++I MY+  G  G A +VF+ +  KD +SW+ +ISG 
Sbjct: 307 GREMHGYVVKTGFAVDVS--VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364

Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF----KAMSTVYE 175
             NG   +AL+ ++LM  + V PD++T  +++SAC+  G +D G+ L     +     Y 
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424

Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPI 234
           +V        +++MY +   +++A      +P E +   W +++   R+ +R  E     
Sbjct: 425 VVANA-----LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFF 478

Query: 235 RQELVNKKGVSVGTFALMS 253
           RQ L+  K  SV   A +S
Sbjct: 479 RQMLLTLKPNSVTLIAALS 497

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  122 bits (308), Expect = 3e-31
 Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
           MP+RD+ SW  ++GGYA+ G+ +EA+ ++  M       P+  T   VL  C  I  L+ 
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLAR 205

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
           G+ VH+++  R+   +   V NA+I MYVKCGDV  A  VF+ +  +D ISW+ +ISG  
Sbjct: 206 GREVHAHV-VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264

Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL---ILFKAMSTVYEIV 177
            NG   + L+LF  M    V PD +T  ++ISAC    L D+ L   +    + T + + 
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISAC--ELLGDERLGREMHGYVVKTGFAV- 321

Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
                   ++ MY   G   EAE     M  +   S W A+++  
Sbjct: 322 -DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-WTAMISGY 364

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  109 bits (273), Expect = 1e-26
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 28/231 (12%)

Query: 1   MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
           MP+R++ SW T+IGG  + G   EA ++F+EM E   +AEP   T V +L A + + +  
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR--TFVVMLRASAGLGSAR 241

Query: 60  FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
            GQ +H     +  +     V  A+I+MY KCGD+  A  VF+ +  K  ++W+++++G 
Sbjct: 242 AGQQLHC-CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300

Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFK 168
           A++G   +AL L+  M  +GV  D  TF  +I   S           H GL+  G  L  
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-- 358

Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
                 +IV  T     +VD+Y + G +E+A      MP +   S W AL+
Sbjct: 359 ------DIVANT----ALVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALI 398

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 9/148 (6%)

Query: 19  RGFC-----EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYD 73
           R  C     E+A+ + + M++ +    +E   V +   C    A+  G  V S   + + 
Sbjct: 59  RALCSHGQLEQALKLLESMQELRVP-VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117

Query: 74  LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
            S+   +GNA+++M+V+ G++  A  VF  +  +D+ SW+ ++ G A  G   +AL L+ 
Sbjct: 118 -SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH 176

Query: 134 LMIINGVFPDDVTFIALISACSHGGLVD 161
            M+  GV PD  TF  ++  C  GG+ D
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTC--GGIPD 202

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 68.0 bits (166), Expect = 8e-13
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 14/260 (5%)

Query: 24  EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGN 82
           EA+ +F+ +E         +T   ++ AC ++ ++   + V+ +  S+ ++      + N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD--QYMMN 162

Query: 83  AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
            V+ M+VKCG +  A ++F+ +  +++ SW T+I GL   G  R+A  LF  M  +G   
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

Query: 143 DDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYAC-VVDMYGRAGLLEEA 199
           +  TF+ ++ A +  G    G  L      + V          +C ++DMY + G +E+A
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIEDA 278

Query: 200 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG--TFALMSNTFA 257
                 MP E     W ++L    +H   E    +  E+    GVS+   TF++M   F+
Sbjct: 279 RCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFS 336

Query: 258 GADRWEDANKIRDEIRRMGL 277
                E A +    + R G 
Sbjct: 337 RLALLEHAKQAHAGLIRTGF 356

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 35/300 (11%)

Query: 3   KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL--SF 60
           K D   +TT+I   A+ G  +    VF EM      E N  T   ++  C+    +  +F
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAF 527

Query: 61  GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS--- 117
           G Y    I    ++    +V NA+I+    CG  G   + F++LA  +M + +  I    
Sbjct: 528 GAY---GIMRSKNVKPDRVVFNALIS---ACGQSGAVDRAFDVLA--EMKAETHPIDPDH 579

Query: 118 ---GLAMNGCGR-----QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA 169
              G  M  C       +A +++ ++    +      +   +++CS  G  D  L ++  
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639

Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-------AEWSVWGALLNAC 222
           M     + P    ++ +VD+ G AG L++A   +++   +       +  S+ GA  NA 
Sbjct: 640 M-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Query: 223 RIHRNDEMFDPIRQELVNKKGVSVGTF-ALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
              +  E+++ I+     K   +V T  AL++      ++   A ++  E++R+GL   T
Sbjct: 699 NWKKALELYEDIKS---IKLRPTVSTMNALIT-ALCEGNQLPKALEVLSEMKRLGLCPNT 754

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 6e-09
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
            D+++++T+I G    G   +AL+LF+ M   G+ P+  T+  LI     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 5  DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEAT 44
          DVV++ T+I GY ++G  EEA+ +F EM+K +  +PN  T
Sbjct: 2  DVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 7  VSWTTMIGGYAERGFCEEAVSVFQEMEK 34
          V++ ++I GY + G  EEA+ +F+EM++
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKE 28

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 17/173 (9%)

Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
           AL++  L+   G+  D   +  LIS C+  G VD    +F  M     +      +  ++
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALI 514

Query: 188 DMYGRAGLLEEAEAF-----IREMPIEAEWSVWGALLNAC-RIHRNDEMFD---PIRQEL 238
           D   RAG +  A+AF     +R   ++ +  V+ AL++AC +    D  FD    ++ E 
Sbjct: 515 DGCARAGQV--AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572

Query: 239 --VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
             ++   ++VG  ALM    A A + + A ++   I    +K       I VN
Sbjct: 573 HPIDPDHITVG--ALMK-ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.8 bits (84), Expect = 9e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 3  KRDVVSWTTMIGGYAERGFCEEAVSVFQEME 33
          K DVV++ T+I G    G  +EAV +  EME
Sbjct: 4  KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
           ++++T+I GL   G   +AL+LF  M   G+ PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 7  VSWTTMIGGYAERGFCEEAVSVFQEMEK 34
          V++ T+I G  + G  EEA+ +F+EM++
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKE 28

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.63
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
PRK12370	553	invasion protein regulator; Provisional	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.59
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.58
PF13041	50	PPR_2: PPR repeat family	99.57
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.57
PRK14574	822	hmsH outer membrane protein; Provisional	99.57
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.55
PF13041	50	PPR_2: PPR repeat family	99.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.52
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
KOG2003	840	consensus TPR repeat-containing protein [General f	99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.47
PRK12370	553	invasion protein regulator; Provisional	99.45
PRK14574	822	hmsH outer membrane protein; Provisional	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.45
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.44
KOG2076	895	consensus RNA polymerase III transcription factor	99.43
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.43
KOG1129	478	consensus TPR repeat-containing protein [General f	99.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.4
PRK11189	296	lipoprotein NlpI; Provisional	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.34
KOG2076	895	consensus RNA polymerase III transcription factor	99.34
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.31
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.29
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.29
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.27
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.24
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.23
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.22
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.21
KOG2003	840	consensus TPR repeat-containing protein [General f	99.2
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.12
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
KOG1125	579	consensus TPR repeat-containing protein [General f	99.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.02
PF12854	34	PPR_1: PPR repeat	98.99
PF12854	34	PPR_1: PPR repeat	98.96
PLN02789	320	farnesyltranstransferase	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PLN02789	320	farnesyltranstransferase	98.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.88
KOG1125	579	consensus TPR repeat-containing protein [General f	98.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.84
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.83
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.81
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.8
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.73
PRK15359	144	type III secretion system chaperone protein SscB;	98.73
PRK15359	144	type III secretion system chaperone protein SscB;	98.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.72
PRK04841	903	transcriptional regulator MalT; Provisional	98.66
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.66
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.66
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.62
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.61
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.61
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.57
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.55
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.52
PRK04841	903	transcriptional regulator MalT; Provisional	98.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.5
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.49
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.48
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.48
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.44
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.38
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.35
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.33
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.33
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.28
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.25
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.24
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.2
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.19
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.18
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.11
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.05
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.02
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.97
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.97
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.95
KOG0553	304	consensus TPR repeat-containing protein [General f	97.93
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.92
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.85
PF12688	120	TPR_5: Tetratrico peptide repeat	97.84
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.83
PF12688	120	TPR_5: Tetratrico peptide repeat	97.8
KOG0553	304	consensus TPR repeat-containing protein [General f	97.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.78
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.78
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.78
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.66
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.64
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.63
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.57
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.48
PRK15331	165	chaperone protein SicA; Provisional	97.46
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.4
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.37
PRK10803	263	tol-pal system protein YbgF; Provisional	97.36
PF13371	73	TPR_9: Tetratricopeptide repeat	97.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.32
PRK10803	263	tol-pal system protein YbgF; Provisional	97.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.29
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.29
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.24
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.09
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.03
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.0
PF13371	73	TPR_9: Tetratricopeptide repeat	96.99
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.92
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.86
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.71
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.66
KOG3941	406	consensus Intermediate in Toll signal transduction	96.65
PRK15331	165	chaperone protein SicA; Provisional	96.64
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.6
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.59
PF13431	34	TPR_17: Tetratricopeptide repeat	96.5
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.35
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.35
PF13428	44	TPR_14: Tetratricopeptide repeat	96.29
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.28
KOG3941	406	consensus Intermediate in Toll signal transduction	96.24
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.21
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.1
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.89
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.86
PF13929	292	mRNA_stabil: mRNA stabilisation	95.85
KOG4555	175	consensus TPR repeat-containing protein [Function	95.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.81
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.74
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.7
PF13512	142	TPR_18: Tetratricopeptide repeat	95.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.6
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.54
PF13428	44	TPR_14: Tetratricopeptide repeat	95.54
KOG1585	308	consensus Protein required for fusion of vesicles	95.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.41
PF13512	142	TPR_18: Tetratricopeptide repeat	95.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.38
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.35
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.33
PRK11906	458	transcriptional regulator; Provisional	95.29
KOG1585	308	consensus Protein required for fusion of vesicles	95.25
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.18
PRK11619	644	lytic murein transglycosylase; Provisional	95.16
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.1
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.97
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.97
KOG4555	175	consensus TPR repeat-containing protein [Function	94.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.76
PRK11906	458	transcriptional regulator; Provisional	94.55
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.42
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.33
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.15
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.14
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.91
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.88
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.48
KOG1258	577	consensus mRNA processing protein [RNA processing	93.27
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.26
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.02
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.0
PF13431	34	TPR_17: Tetratricopeptide repeat	92.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.75
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.68
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.65
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.65
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.46
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.45
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.43
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.66
KOG1258	577	consensus mRNA processing protein [RNA processing	91.6
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.59
KOG1586	288	consensus Protein required for fusion of vesicles	91.38
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.16
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.87
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.7
PF13762	145	MNE1: Mitochondrial splicing apparatus component	90.56
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.52
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	90.43
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.42
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.68
PF11838	324	ERAP1_C: ERAP1-like C-terminal domain; InterPro: I	89.35
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.33
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.31
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.3
PRK09687	280	putative lyase; Provisional	89.15
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.9
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.87
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.59
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	88.51
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.1
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	88.0
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.52
KOG4234	271	consensus TPR repeat-containing protein [General f	87.04
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.47
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.29
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.12
KOG4234	271	consensus TPR repeat-containing protein [General f	85.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.91
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	85.83
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.76
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.48
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.35
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.32
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.29
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.49
COG3947	361	Response regulator containing CheY-like receiver a	84.25
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.64
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.96
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.94
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	82.84
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.46
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.3
COG2178	204	Predicted RNA-binding protein of the translin fami	82.26
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	81.54
PF13929	292	mRNA_stabil: mRNA stabilisation	81.47
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	80.88
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.52
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	80.51
PHA02875	413	ankyrin repeat protein; Provisional	80.51
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	80.38
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.22

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-54  Score=380.54  Aligned_cols=291  Identities=33%  Similarity=0.644  Sum_probs=284.3

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ||+||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|++++|.+++..|.+ .|++|+..+
T Consensus       285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~  362 (697)
T PLN03081        285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVA  362 (697)
T ss_pred             CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeee
Confidence            688999999999999999999999999999999988 999999999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +++|+.+|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus       363 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~  442 (697)
T PLN03081        363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS  442 (697)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+.+.+..+++++.+
T Consensus       443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            99999999998767999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCCCC
Q 036775          241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF  293 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~~~  293 (293)
                      ..|.+..+|..|+.+|++.|++++|.+++++|++.|+++.+++.|+.+++.+|
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~  575 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH  575 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence            88888999999999999999999999999999999999999999999998764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-51  Score=365.20  Aligned_cols=282  Identities=20%  Similarity=0.290  Sum_probs=140.7

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      ||..+||+||.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|+.
T Consensus       470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYns  547 (1060)
T PLN03218        470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNA  547 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence            444555555555555555555555555554444 445555555555555555555555555555544 445555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhh------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775           84 VINMYVKCGDVGIAIQVFNMLA------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG  157 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  157 (293)
                      ||.+|++.|++++|.++|++|.      .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.
T Consensus       548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~  627 (1060)
T PLN03218        548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK  627 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            5555555555555555555443      1344445555555555555555555555555444444555555555555555


Q ss_pred             CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhchHH
Q 036775          158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDPI  234 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~  234 (293)
                      |++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|   +..||..+|+.++.+|.+.|+.++|..+
T Consensus       628 G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l  706 (1060)
T PLN03218        628 GDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL  706 (1060)
T ss_pred             CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            555555555555544 344455445555555555555555555555444   3444555555555555555555555555


Q ss_pred             HHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeee
Q 036775          235 RQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV  288 (293)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i  288 (293)
                      |++|.+.+ .|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|.+++
T Consensus       707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            54444332 4444555555555555555555555555555555555554444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2e-51  Score=364.09  Aligned_cols=288  Identities=15%  Similarity=0.254  Sum_probs=278.3

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      |+.||..+||.+|.+|++.|++++|.++|+.|.+.| ..||..+|+.+|.+|++.|+++.|.++|++|.+ .|+.||..+
T Consensus       432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvT  509 (1060)
T PLN03218        432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHT  509 (1060)
T ss_pred             cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHH
Confidence            577999999999999999999999999999999999 999999999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCcHhHHHHHHHHH
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISAC  154 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~  154 (293)
                      |+.+|.+|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..||++++.+|
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999974    6899999999999999999999999999986  68999999999999999


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhc
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ++.|++++|.++|+.|.+ .+++|+..+|+.+|.+|++.|++++|.++|++|   ++.||..+|+.++.+|.+.|+.++|
T Consensus       590 ~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999998 799999999999999999999999999999999   7899999999999999999999999


Q ss_pred             hHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCC
Q 036775          232 DPIRQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS  291 (293)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~  291 (293)
                      ..+++.|.+.+ +|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|.++|.++
T Consensus       669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy  729 (1060)
T PLN03218        669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL  729 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999877 8899999999999999999999999999999999999999998888765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-51  Score=358.89  Aligned_cols=286  Identities=24%  Similarity=0.373  Sum_probs=276.7

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ||+||..+||++|.+|++.|++++|+++|++|.+.| ..||..+|..++.+|++.|..+.+.+++..+.+ .|+.||..+
T Consensus       184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~-~g~~~d~~~  261 (697)
T PLN03081        184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFV  261 (697)
T ss_pred             CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH-hCCCcccee
Confidence            688999999999999999999999999999999988 999999999999999999999999999999998 899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      ++.|+.+|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~  341 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL  341 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ++|.+++..|.+ .|+.||..+|+.|+++|++.|++++|.++|++|. .||..+|+++|.+|.++|+.++|..+|++|.+
T Consensus       342 ~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        342 EHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999997 7999999999999999999999999999999997 68999999999999999999999999999988


Q ss_pred             hc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCCccceeeecC
Q 036775          241 KK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR-MGLKKKTGCSWIEVNP  290 (293)
Q Consensus       241 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~~i~~  290 (293)
                      .+ .||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|..+|++
T Consensus       420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            66 89999999999999999999999999999986 6999999999887764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.2e-50  Score=359.83  Aligned_cols=289  Identities=42%  Similarity=0.792  Sum_probs=280.3

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      |++||+.+||++|.+|++.|+.++|+++|++|.. + ++||..||+.++.+|++.|+++.+.+++..+.+ .|+.++..+
T Consensus       450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~  526 (857)
T PLN03077        450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFL  526 (857)
T ss_pred             CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcccee
Confidence            6789999999999999999999999999999975 4 899999999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +++|+.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV  605 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence            999999999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++.+
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~  685 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE  685 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            99999999999658999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCCCC
Q 036775          241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF  293 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~~~  293 (293)
                      ..|.+...|..|...|...|+|++|.++.+.|++.|++++++++||+++|.||
T Consensus       686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~  738 (857)
T PLN03077        686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH  738 (857)
T ss_pred             hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-49  Score=356.38  Aligned_cols=287  Identities=24%  Similarity=0.446  Sum_probs=258.9

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ||+||.++||++|.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+.+.+.+++..+.+ .|+.||..+
T Consensus       248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~  325 (857)
T PLN03077        248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSV  325 (857)
T ss_pred             CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHH
Confidence            789999999999999999999999999999999998 999999999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      |+.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus       326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~  405 (857)
T PLN03077        326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL  405 (857)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      +.|.++++.+.+ .|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|++++.+|.+.|+.++|..+|++|..
T Consensus       406 ~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        406 DVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL  483 (857)
T ss_pred             HHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999999997 7999999999999999999999999999999996 46777777777777777777777777766654


Q ss_pred             hcC-----------------------------------------------------------------CchhhHHHHHHH
Q 036775          241 KKG-----------------------------------------------------------------VSVGTFALMSNT  255 (293)
Q Consensus       241 ~~~-----------------------------------------------------------------~~~~~~~~li~~  255 (293)
                      ..+                                                                 +|..+|+.+|.+
T Consensus       484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~  563 (857)
T PLN03077        484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTG  563 (857)
T ss_pred             CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHH
Confidence            332                                                                 344456677777


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCC
Q 036775          256 FAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS  291 (293)
Q Consensus       256 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~  291 (293)
                      |++.|+.++|.++|++|.+.|+.||..+|..++.++
T Consensus       564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  599 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC  599 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            777788888888888888888888888777766544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=1.5e-22  Score=167.30  Aligned_cols=276  Identities=12%  Similarity=0.057  Sum_probs=219.3

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc--hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP--NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      .+..+|..+...+...|++++|..+++.+...+...+  +...+..+...+...|+++.|..+++.+.+  ..+.+..++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~  144 (389)
T PRK11788         67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD--EGDFAEGAL  144 (389)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc--CCcchHHHH
Confidence            3566788888999999999999999999877541111  124677788888999999999999999877  345667788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhCCc--------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYKDM--------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      ..++..+.+.|++++|.+.++.+.+.+.        ..+..+...+.+.|++++|...|+++.+... .+...+..+...
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~  223 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDL  223 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHH
Confidence            8999999999999999999998876422        1345677778889999999999999887643 245677888888


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhch
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      +.+.|++++|.++++++.+ .+......+++.++.+|...|++++|...++++ ...|+...+..+...+...|+++.|.
T Consensus       224 ~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        224 ALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999886 222222456788899999999999999999988 55677777788888899999999999


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFAG---ADRWEDANKIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~  284 (293)
                      .+++++.+..| +..++..++..+..   .|+.+++..++++|.+.+++|++...
T Consensus       303 ~~l~~~l~~~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~  356 (389)
T PRK11788        303 ALLREQLRRHP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR  356 (389)
T ss_pred             HHHHHHHHhCc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence            99998888765 44577777766654   56899999999999998888888743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=4.8e-21  Score=158.27  Aligned_cols=265  Identities=11%  Similarity=0.002  Sum_probs=217.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---NLVGNAVINMYV   89 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~   89 (293)
                      ...+...|++++|+..|+++.+.+  +.+..++..+...+...|++++|..+++.+.. ....++   ...+..+...|.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHH
Confidence            334667899999999999999853  44566888899999999999999999999887 322121   246788999999


Q ss_pred             HcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCCChhH
Q 036775           90 KCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQ  162 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~  162 (293)
                      +.|++++|..+|+++.+.   +..+++.++..+...|++++|.+.++.+.+.+..++.    ..+..+...+.+.|++++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999999863   5668999999999999999999999999887644322    245667778889999999


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      |...++++.+.  .+.+...+..+...|.+.|++++|.++++++ ...|+  ..+++.+..+|...|+.++|...++++.
T Consensus       199 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        199 ARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999862  2344567888999999999999999999998 33454  3467888999999999999999999998


Q ss_pred             hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      +..|. ...+..++..+.+.|++++|.++++++.+.  .|+...+.
T Consensus       277 ~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~  319 (389)
T PRK11788        277 EEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH  319 (389)
T ss_pred             HhCCC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence            87654 456688999999999999999999988774  56665444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.89  E-value=5.7e-20  Score=167.15  Aligned_cols=264  Identities=11%  Similarity=0.015  Sum_probs=176.0

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +..++..+...+.+.|++++|...++++...+  +.+...+..+...+...|++++|..+++.+.+  ..+.+..+|..+
T Consensus       532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l  607 (899)
T TIGR02917       532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLML  607 (899)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHH
Confidence            44556666666666666666666666665542  33445555666666666777777777776655  445566667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ..+|.+.|++++|...|+++.+.   +...+..+..++.+.|++++|...|+++.+... .+..++..+...+...|+++
T Consensus       608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  686 (899)
T TIGR02917       608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTE  686 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777766542   444566677777777777777777777765432 24566667777777777777


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      +|.++++.+.+  ..+.+...+..+...+...|++++|...|+.+ ...|+..++..+...+...|+.++|...++.+.+
T Consensus       687 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       687 SAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777765  22445556666777777777777777777776 4445555666666677777777777777777777


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ..|.++..+..+...|...|++++|.+.|+++.+.
T Consensus       765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.89  E-value=1.1e-19  Score=165.23  Aligned_cols=262  Identities=9%  Similarity=0.004  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ...|..+...+...|++++|+..|+++.+..  +.+...+..+..++...|++++|...++.+.+  ..+.+...+..++
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~  676 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLA  676 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence            3444444444444444444444444444321  22233344444444444444444444444443  2233344444444


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      ..+...|++++|.++++.+.+.   +...+..+...+...|++++|.+.|+++...+  |+..++..+..++.+.|++++
T Consensus       677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~  754 (899)
T TIGR02917       677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE  754 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence            4444445555555444444432   33344555555555666666666666655543  333455555566666666666


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      |.+.++.+.+  ..+.+...+..+...|...|++++|...|+++ .. .++...++.+...+...|+ .+|...+++..+
T Consensus       755 A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       755 AVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            6666666654  23345556666666666677777777776666 22 2344456666666666666 556666666666


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      ..|.++.++..+..++...|++++|.++|+++.+.+
T Consensus       832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            666666666666777777777777777777776644

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=3.3e-17  Score=142.58  Aligned_cols=256  Identities=9%  Similarity=-0.051  Sum_probs=150.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      ++.+....|++++|+..|+++....  +.+...+..+...+...|++++|...++.+.+  -.|.+...+..+...+...
T Consensus        82 l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~  157 (656)
T PRK15174         82 WVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLM  157 (656)
T ss_pred             HhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHC
Confidence            3344555677777777777766642  33344555666666677777777777777665  2344455566666667777


Q ss_pred             CCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHH
Q 036775           92 GDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK  168 (293)
Q Consensus        92 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  168 (293)
                      |++++|...++++..  | +...+..+ ..+.+.|++++|...++.+.+....++......+..++.+.|++++|...++
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~  236 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE  236 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777776665542  2 22222222 2355666666666666666554333333444444555666666666666666


Q ss_pred             HhhhhcCCCcchhHHHHHHHHHHhcCChHH----HHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEE----AEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      .+.+  ..+.+...+..+...|...|++++    |...|++. ...|+ ...+..+...+...|++++|...+++..+..
T Consensus       237 ~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~  314 (656)
T PRK15174        237 SALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH  314 (656)
T ss_pred             HHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            6664  123344555566666666666664    56666655 33343 3355556666666666666666666666666


Q ss_pred             CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      |.++..+..+..++.+.|++++|...|+++.+
T Consensus       315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=1.7e-16  Score=138.14  Aligned_cols=263  Identities=10%  Similarity=-0.037  Sum_probs=214.6

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|+..++++.+.  .+.+...+..+..++...|++++|...++.+..  ..+.+...+..+
T Consensus       109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~--~~P~~~~a~~~~  184 (656)
T PRK15174        109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ--EVPPRGDMIATC  184 (656)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            5667888889999999999999999999884  244466788888999999999999999998866  233333444343


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKD----MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                       ..+...|++++|...++.+.+.+    ...+..+..++...|++++|...|+++.+.... +...+..+...+...|++
T Consensus       185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~  262 (656)
T PRK15174        185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRS  262 (656)
T ss_pred             -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCc
Confidence             34788999999999999987642    233455667889999999999999999987543 577788889999999999


Q ss_pred             hH----HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHH
Q 036775          161 DQ----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPI  234 (293)
Q Consensus       161 ~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~  234 (293)
                      ++    |...++...+  -.+.+...+..+...+...|++++|...+++. ...|+ ...+..+..++...|++++|...
T Consensus       263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~  340 (656)
T PRK15174        263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE  340 (656)
T ss_pred             hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            86    8999999986  23445678899999999999999999999998 44554 44667778889999999999999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ++.+....|.+...+..+..++...|++++|.+.|++..+.
T Consensus       341 l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        341 FVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999888777666666788899999999999999998763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.4e-18  Score=139.10  Aligned_cols=265  Identities=11%  Similarity=0.124  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ..|+.|-..+-..|+...|+..|++..+   +.|+ ...|..+...+...+.++.|...|.+...  --+....++..+.
T Consensus       219 iawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla  293 (966)
T KOG4626|consen  219 IAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLA  293 (966)
T ss_pred             eeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceE
Confidence            3577777888888999999999999887   5566 56888899999999999999999988865  3444567788888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      ..|...|+++-|+..|++..+.+   ...|+.|..++-..|+..+|.+.|++....... -....+.|...+...|.+++
T Consensus       294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchH
Confidence            88999999999999999988653   458999999999999999999999998876332 45678889999999999999


Q ss_pred             HHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          163 GLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      |..+|....+   +.|. ....+.|...|-..|++++|+..+++. .+.|+.. .|+.+...|...|+.+.|.+.+.+..
T Consensus       373 A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  373 ATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             HHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            9999999885   2344 467899999999999999999999988 7888754 88899999999999999999999999


Q ss_pred             hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      ...|.-...++.|...|-..|+..+|+.-+++..+  ++||..
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp  490 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP  490 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence            98888889999999999999999999999998765  666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=2.6e-16  Score=137.10  Aligned_cols=251  Identities=12%  Similarity=-0.047  Sum_probs=206.6

Q ss_pred             CCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           20 GFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                      +++++|.+.|+.....+...|+ ...+..+...+...|++++|...++...+  ..|.....|..+...+...|++++|.
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            6789999999999876433454 45677777888899999999999999977  34445668889999999999999999


Q ss_pred             HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      ..|++..+.   +..+|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|...++...+  .
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~  462 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKK--N  462 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence            999988754   5678999999999999999999999999886443 567788888899999999999999999986  3


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-h-------HHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775          176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-S-------VWGALLNACRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                      .+.+...++.+...+...|++++|+..|++. ...|+. .       .++.....+...|++++|..++++..+..|.+.
T Consensus       463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            3455778999999999999999999999986 433421 1       112222234457999999999999998888888


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ..+..+...+.+.|++++|.+.|++..+.
T Consensus       543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       543 IAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88999999999999999999999987653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=1.1e-15  Score=133.10  Aligned_cols=162  Identities=10%  Similarity=-0.053  Sum_probs=125.8

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHH
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMY  190 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  190 (293)
                      .|+.+...+...|++++|+..|++..+.... +...|..+...+...|++++|...|+.+.+.  .+.+..+|..+...+
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            4555566666778888888888887765322 3557777777788888888888888888752  234567788888888


Q ss_pred             HhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          191 GRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       191 ~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      ...|++++|...|++. ...|+ ...+..+...+...|+++.|...+++..+..|.++..++.+..++...|++++|.+.
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            8889999999888887 44554 446666777788899999999999988888888888899999999999999999999


Q ss_pred             HHHHHHc
Q 036775          269 RDEIRRM  275 (293)
Q Consensus       269 ~~~m~~~  275 (293)
                      |++....
T Consensus       490 ~~~Al~l  496 (615)
T TIGR00990       490 FDTAIEL  496 (615)
T ss_pred             HHHHHhc
Confidence            9887663

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=3.6e-18  Score=134.52  Aligned_cols=257  Identities=13%  Similarity=0.046  Sum_probs=113.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV   89 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   89 (293)
                      .+...+.+.|++++|+++++...... .+|+.. .|..+...+...++.+.|.+.++.+.. . -+-+...+..++.. .
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~-~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-S-DKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-c-cccccccccccccc-c
Confidence            45778889999999999996654432 245544 444555567788999999999999987 2 22355667777777 7


Q ss_pred             HcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775           90 KCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLIL  166 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~  166 (293)
                      ..+++++|.++++..-+  ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            89999999999987744  466778888999999999999999999987543 345777888889999999999999999


Q ss_pred             HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      +++..+.  .+.|......++..+...|+.+++.++++..  ....|...+..+..+|...|+.+.|...+++..+..|.
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            9999872  2335778889999999999999988888877  22345567888999999999999999999999999999


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          245 SVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       245 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      |+.+...+..++...|+.++|.++.++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            99999999999999999999999987654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-16  Score=130.16  Aligned_cols=271  Identities=13%  Similarity=0.095  Sum_probs=174.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH-HH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NA   83 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~   83 (293)
                      ..+|..+...+-..|+++.|+.+++.+.+.   .| ....|..+..++...|+.+.|.+.|....+   +.|+.... ..
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~  189 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSD  189 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcc
Confidence            467888888899999999999999998884   44 466788888888888888888877777655   33433222 22


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhh----------------------------------hCCc---ccHHHHHHHHHhcCCHH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLA----------------------------------YKDM---ISWSTVISGLAMNGCGR  126 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~----------------------------------~~~~---~~~~~li~~~~~~~~~~  126 (293)
                      +...+-..|++++|...|.+..                                  +-|+   ..|-.|...|...+.++
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence            3333333455555555544444                                  3222   24445555555555555


Q ss_pred             HHHHHHHHHHhCCCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHH
Q 036775          127 QALQLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIR  204 (293)
Q Consensus       127 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~  204 (293)
                      +|...|.+....  .|+ ...+..+...|-.+|.+|.|+..|++..+   ..|+ ...|+.|..++-..|++.+|.+.+.
T Consensus       270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYn  344 (966)
T KOG4626|consen  270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYN  344 (966)
T ss_pred             HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence            555555544432  222 33444444445566777777777777765   2343 3567888888888888888888877


Q ss_pred             hC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          205 EM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       205 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      .. ...|+ ....+.|...|...|.++.|..+|....+-.|.-...++.|...|-++|++++|...+++..+  ++|+-.
T Consensus       345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA  422 (966)
T KOG4626|consen  345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA  422 (966)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence            76 33333 346677777788888888888888777777776677778888888888888888888877654  666655


Q ss_pred             cceeeec
Q 036775          283 CSWIEVN  289 (293)
Q Consensus       283 ~~~~~i~  289 (293)
                      -....++
T Consensus       423 da~~NmG  429 (966)
T KOG4626|consen  423 DALSNMG  429 (966)
T ss_pred             HHHHhcc
Confidence            4443333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.73  E-value=3.5e-14  Score=131.70  Aligned_cols=262  Identities=12%  Similarity=0.023  Sum_probs=161.0

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH------------HHHHHhcccCcchHHHHHHHHHHhhc
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV------------NVLSACSSISALSFGQYVHSYISTRY   72 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~   72 (293)
                      |...+..+..++.+.|++++|+..|++..+..+..++...|.            .....+.+.|++++|...++++.+  
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--  379 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ--  379 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            667788888888888889999888888877431222211121            112345677888888888888877  


Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHH-----------------------------------
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWST-----------------------------------  114 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-----------------------------------  114 (293)
                      ..+.+...+..+...+...|++++|++.|++..+.+   ...+..                                   
T Consensus       380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l  459 (1157)
T PRK11447        380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL  459 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            344556667778888888899999988888877532   112211                                   


Q ss_pred             -------HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH-
Q 036775          115 -------VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-  186 (293)
Q Consensus       115 -------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-  186 (293)
                             +...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|...++++.+..  +.+...+..+ 
T Consensus       460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~a  536 (1157)
T PRK11447        460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYG  536 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence                   223345678888888888888776433 45667777778888888888888888876521  1222222222 


Q ss_pred             -------------------------------------------HHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHH
Q 036775          187 -------------------------------------------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR  223 (293)
Q Consensus       187 -------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~  223 (293)
                                                                 ...+...|+.++|..+++.-+  ++...+..+...+.
T Consensus       537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~  614 (1157)
T PRK11447        537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQ  614 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence                                                       122333333333433333211  12223344444556


Q ss_pred             hcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..|+.++|...+++..+..|.++..+..++..+...|++++|.+.++...
T Consensus       615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=7.1e-14  Score=125.25  Aligned_cols=258  Identities=10%  Similarity=0.000  Sum_probs=170.7

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+..++.. ++.++|+..|.+...   ..|+......+...+...|++++|...++.+..   .+|+...+..+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~l  548 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAA  548 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHH
Confidence            45566666666655 677777777777665   345544433344445577778888777777644   24444455666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS---GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ...+.+.|+.++|.+.+++..+.++...+....   .+.+.|++++|...|++..+.  .|+...+..+..++.+.|+.+
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence            677777778888887777777654444333332   223347888888887777764  345667777777777788888


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      +|...+++..+  .-+.+...++.+..++...|++++|+..+++. ...| +...+..+..++...|++++|...+++..
T Consensus       627 eA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        627 AAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88887777775  22334556677777777778888887777776 4444 34466677777777788888888877777


Q ss_pred             hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      +..|.+..+.........+..+++.|.+-+++--
T Consensus       705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            7777666666666666666777777776665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=8.7e-14  Score=129.08  Aligned_cols=261  Identities=9%  Similarity=-0.029  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY   88 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   88 (293)
                      +..+...+...|++++|++.|++..+..  +-+...+..+...+.+.|++++|...++.+.+  ..+.+...+..+...+
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l  539 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKPNDPEQVYAYGLYL  539 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence            4456677888999999999999998852  33466777888899999999999999999877  3444555566666677


Q ss_pred             HHcCCHHHHHHHHHHhhhCC-------------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           89 VKCGDVGIAIQVFNMLAYKD-------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      ...++.++|+..++.+....             ...+..+...+...|+.++|..+++.     .+.+...+..+...+.
T Consensus       540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~  614 (1157)
T PRK11447        540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ  614 (1157)
T ss_pred             HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence            88999999999999875421             11233456778899999999999882     2446667788888999


Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchH
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDP  233 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~  233 (293)
                      +.|+.++|...|+...+  .-+.+...+..++..|...|++++|++.++.. ...|+ ...+..+..++...|+.++|..
T Consensus       615 ~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~  692 (1157)
T PRK11447        615 QRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR  692 (1157)
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999997  23456778899999999999999999999988 44444 4456677778899999999999


Q ss_pred             HHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCC
Q 036775          234 IRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR-MGLKKK  280 (293)
Q Consensus       234 ~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~  280 (293)
                      +++.+....+.+      ...+..+...+...|++++|...|++... .|+.|.
T Consensus       693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~  746 (1157)
T PRK11447        693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT  746 (1157)
T ss_pred             HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence            999998865332      24666778889999999999999998753 456544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.68  E-value=5.2e-13  Score=118.88  Aligned_cols=268  Identities=9%  Similarity=-0.035  Sum_probs=156.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ...+..+...+...|++++|+..+++..+.  .+.+.. +..+..++...|+.++|...++++.+  ..|.+...+..+.
T Consensus        83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~~~~~~la  157 (765)
T PRK10049         83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQQYPTEYV  157 (765)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            444455555566666666666666666553  122333 55555555666666666666666655  2333334444444


Q ss_pred             HHHHHcCCHHHHHHHHH----------------------------------------------Hhhh---CCcccHHH--
Q 036775           86 NMYVKCGDVGIAIQVFN----------------------------------------------MLAY---KDMISWST--  114 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~----------------------------------------------~~~~---~~~~~~~~--  114 (293)
                      ..+...+..++|++.++                                              .+.+   .++.....  
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            44444444443333332                                              2221   01111000  


Q ss_pred             -----HHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--chhHHHHH
Q 036775          115 -----VISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--QTQHYACV  186 (293)
Q Consensus       115 -----li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l  186 (293)
                           .+.++...|++++|...|+++.+.+.. |+. .-..+..++...|++++|...|+.+.+.....+  .......+
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L  316 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL  316 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence                 022344567778888888887776532 332 112245577788888888888888764211110  12345556


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCc-------------h---HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775          187 VDMYGRAGLLEEAEAFIREM-PIEA-------------E---WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       187 ~~~~~~~g~~~~a~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  249 (293)
                      ..++...|++++|..+++.+ ...|             +   ...+..+...+...|+.++|...++++....|.++..+
T Consensus       317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~  396 (765)
T PRK10049        317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR  396 (765)
T ss_pred             HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            66778888888888888777 2222             2   12334455567778888888888888888778888888


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          250 ALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       250 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      ..+...+...|++++|++.+++..+  +.|+.
T Consensus       397 ~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~  426 (765)
T PRK10049        397 IDYASVLQARGWPRAAENELKKAEV--LEPRN  426 (765)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence            8888888888888888888887665  44554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=2.6e-13  Score=111.80  Aligned_cols=246  Identities=9%  Similarity=0.040  Sum_probs=152.9

Q ss_pred             cCCHHHHHHHHHHHHHccCCCchHHHH-HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH--HHHHHHHHcCCHH
Q 036775           19 RGFCEEAVSVFQEMEKTKEAEPNEATL-VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVG   95 (293)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~   95 (293)
                      .|++++|.+.+....+..   +++..+ .....+..+.|+++.+.+.+.++.+   .+|+.....  .....+...|+++
T Consensus        97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHH
Confidence            488888887777655532   223333 2333445788888888888888865   445543332  3366778888888


Q ss_pred             HHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCChhHHHH
Q 036775           96 IAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        96 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      +|.+.+++..+.   +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            888888888754   4556777888888888888888888888877655322       123333333334444555555


Q ss_pred             HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      +++.+-+  ..+.+......+...+...|+.++|..++++. +..|+...  .++.+....++.+.+....+...+..|.
T Consensus       251 ~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        251 WWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence            5555543  22345556666666777777777777766665 32333321  1223333446666666666666666666


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          245 SVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       245 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      |+..+..+...+.+.|++++|.+.|+...+
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~  356 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK  356 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            666666666666666666666666666655

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.66  E-value=4.1e-13  Score=120.48  Aligned_cols=231  Identities=10%  Similarity=0.017  Sum_probs=186.0

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG  118 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~  118 (293)
                      +...|..+..++.. ++..+|...+.....   ..|+......+...+...|++++|...|+++..  ++...+..+..+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a  551 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT  551 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            56677777777666 788889998887766   235544444555666789999999999998765  344556777888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  198 (293)
                      +.+.|+.++|...+++..+.... +...+..+.......|++++|...+++..+   ..|+...+..+..++.+.|++++
T Consensus       552 ll~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        552 AQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence            89999999999999999886522 333343444455567999999999999986   24678889999999999999999


Q ss_pred             HHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          199 AEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       199 a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      |+..+++. ...|+ ...++.+...+...|+.++|...+++..+..|.++..+..+..++...|++++|...+++..+  
T Consensus       628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--  705 (987)
T PRK09782        628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--  705 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence            99999998 55665 446777777899999999999999999999999999999999999999999999999999876  


Q ss_pred             CCCCC
Q 036775          277 LKKKT  281 (293)
Q Consensus       277 ~~p~~  281 (293)
                      +.|+.
T Consensus       706 l~P~~  710 (987)
T PRK09782        706 DIDNQ  710 (987)
T ss_pred             cCCCC
Confidence            44544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=4.7e-14  Score=115.98  Aligned_cols=255  Identities=11%  Similarity=-0.041  Sum_probs=187.0

Q ss_pred             CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc----------------------------
Q 036775           21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY----------------------------   72 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------------   72 (293)
                      +..+|+..|......  +.-+......+.++|...+++++|+++|+.+.+..                            
T Consensus       334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence            345566666654442  22223344445555666666666666666655411                            


Q ss_pred             ----CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775           73 ----DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV  145 (293)
Q Consensus        73 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  145 (293)
                          -.+..+.+|.++.++|+-.++.+.|++.|++..+-   ...+|+.+..-+.....+|.|...|+.......+ +-.
T Consensus       412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYn  490 (638)
T KOG1126|consen  412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYN  490 (638)
T ss_pred             HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhH
Confidence                23556788999999999999999999999998865   4578888888889999999999999988653222 223


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~  223 (293)
                      .|--+...|.+.++++.|+-.|+...+ - -+-+......+...+.+.|+.++|++++++. ...| |+..-.--...+.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~-I-NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVE-I-NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhc-C-CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence            444556678899999999999999885 1 2345667778888999999999999999998 3333 3333344555677


Q ss_pred             hcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      ..+++++|...++++++..|.+..+|..+...|.+.|+.+.|..-|--+.+  +.|...
T Consensus       569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~  625 (638)
T KOG1126|consen  569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA  625 (638)
T ss_pred             hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence            889999999999999999999999999999999999999999988876655  444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.63  E-value=2.9e-12  Score=114.13  Aligned_cols=267  Identities=8%  Similarity=-0.036  Sum_probs=193.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchH------------------------
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF------------------------   60 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~------------------------   60 (293)
                      +.. +..+..++...|+.++|+..++++.+..  +.+...+..+..++...+..+.                        
T Consensus       116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~  192 (765)
T PRK10049        116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA  192 (765)
T ss_pred             CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445 8888888999999999999999998853  2233444444444444444443                        


Q ss_pred             ----------------------HHHHHHHHHhhcCCCCchh-HH----HHHHHHHHHcCCHHHHHHHHHHhhhCC--ccc
Q 036775           61 ----------------------GQYVHSYISTRYDLSVSNL-VG----NAVINMYVKCGDVGIAIQVFNMLAYKD--MIS  111 (293)
Q Consensus        61 ----------------------a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~  111 (293)
                                            |.+.++.+.+.....|+.. .+    ...+..+...|++++|+..|+++.+.+  ...
T Consensus       193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~  272 (765)
T PRK10049        193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP  272 (765)
T ss_pred             HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence                                  3444444443111222221 11    111334567799999999999998653  122


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----------C
Q 036775          112 --WSTVISGLAMNGCGRQALQLFSLMIINGVFP---DDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------I  176 (293)
Q Consensus       112 --~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~  176 (293)
                        -..+..++...|++++|+..|+++.+.....   .......+..++...|++++|.++++.+.+...          -
T Consensus       273 ~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~  352 (765)
T PRK10049        273 WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS  352 (765)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence              2235778999999999999999987653221   134566677788999999999999999986211          0


Q ss_pred             Ccc---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHH
Q 036775          177 VPQ---TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFAL  251 (293)
Q Consensus       177 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  251 (293)
                      .|+   ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++.|+..+++.....|.+...+..
T Consensus       353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~  432 (765)
T PRK10049        353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE  432 (765)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            122   234566788899999999999999998 3344 45578888888999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH
Q 036775          252 MSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       252 li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++..+.+.|++++|..+++++.+
T Consensus       433 ~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        433 QAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999987

>TIGR00540 hemY_coli hemY protein

Probab=99.62  E-value=1.2e-12  Score=108.50  Aligned_cols=259  Identities=9%  Similarity=-0.017  Sum_probs=165.0

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHH-HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCH
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEAT-LVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDV   94 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~   94 (293)
                      ..|+++.|.+.+.+..+   ..|++.. +-....+..+.|+.+.+.+.+....+   ..|+.  .+.......+...|++
T Consensus        96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~  169 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNEL  169 (409)
T ss_pred             hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCH
Confidence            45889999888887766   3455433 33445567778899999998888766   22333  2334457778888999


Q ss_pred             HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH---hcCCChhHHHHHHH
Q 036775           95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC---SHGGLVDQGLILFK  168 (293)
Q Consensus        95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~  168 (293)
                      +.|.+.++.+.+.   +......+...+...|++++|.+.+..+.+.++.++......-..++   ...+..+.+.+.+.
T Consensus       170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999988888753   55677788888899999999999999888876543322211111111   22222222233333


Q ss_pred             Hhhhhc--CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHH-HHHHHH--HHhcCChhhchHHHHHHHhhc
Q 036775          169 AMSTVY--EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVW-GALLNA--CRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       169 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~-~~l~~~--~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      .+.+..  ..+.+...+..+...+...|+.++|.+++++. +..||.... ..++..  ....++.+.+...+++..+..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            333210  11236667777778888888888888888777 434544321 012222  334566777777777777777


Q ss_pred             CCch--hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          243 GVSV--GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       243 ~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      |.++  ....++...+.+.|++++|.+.|+........|++.
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~  371 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN  371 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence            7777  667777888888888888888887544444455554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=2.4e-15  Score=118.53  Aligned_cols=230  Identities=12%  Similarity=0.081  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHH
Q 036775           40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTV  115 (293)
Q Consensus        40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l  115 (293)
                      |+...+ .+...+.+.|++++|.+++..... .. .+.+...|..+.......++.+.|.+.++++...   +...+..+
T Consensus         7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l   84 (280)
T PF13429_consen    7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL   84 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc-cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            443333 556778899999999999966554 23 2445566667777888899999999999999865   44567777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775          116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL  195 (293)
Q Consensus       116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  195 (293)
                      +.. ...+++++|.+++.+..+.  .++...+...+..+.+.++++++.++++.+......+.+...|..+...+.+.|+
T Consensus        85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~  161 (280)
T PF13429_consen   85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD  161 (280)
T ss_dssp             ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred             ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            777 7899999999999887654  3566778888889999999999999999987644456677889999999999999


Q ss_pred             hHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          196 LEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       196 ~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      .++|++.+++. ...|+ ......++..+...|+.+++..+++...+..+.++..+..+..++...|+.++|..+|++..
T Consensus       162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence            99999999998 55664 66788899999999999999999999998888888999999999999999999999999977


Q ss_pred             H
Q 036775          274 R  274 (293)
Q Consensus       274 ~  274 (293)
                      +
T Consensus       242 ~  242 (280)
T PF13429_consen  242 K  242 (280)
T ss_dssp             H
T ss_pred             c
Confidence            6

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=4.8e-12  Score=104.40  Aligned_cols=254  Identities=9%  Similarity=0.017  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH--HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      |-....+..+.|+++.|.+.+.++.+   ..|+.....  .....+...|+++.|.+.++.+.+  ..|.+......+..
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~~al~ll~~  195 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VAPRHPEVLRLAEQ  195 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence            43334555889999999999999987   567765444  335568899999999999999987  45667788899999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhCCc-----------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           87 MYVKCGDVGIAIQVFNMLAYKDM-----------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      .|.+.|++++|.+++..+.+...           .+|..++.......+.+...++++.+-+. .+.+......+..++.
T Consensus       196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~  274 (398)
T PRK10747        196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLI  274 (398)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHH
Confidence            99999999999999999986522           13444444444555667777777776433 2447788889999999


Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchH
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDP  233 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~  233 (293)
                      ..|+.++|.+.+++..+ .  +|+...  .++.+....++.+++.+..+.. +..|+ ......+...|...+++++|..
T Consensus       275 ~~g~~~~A~~~L~~~l~-~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~  349 (398)
T PRK10747        275 ECDDHDTAQQIILDGLK-R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL  349 (398)
T ss_pred             HCCCHHHHHHHHHHHHh-c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999998875 2  455522  2344445669999999999888 44554 4467788888999999999999


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|+...+..| +..++..+..++.+.|+.++|.+++++-..
T Consensus       350 ~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        350 AFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999998765 567788999999999999999999987543

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=3.1e-12  Score=109.96  Aligned_cols=262  Identities=11%  Similarity=-0.023  Sum_probs=180.8

Q ss_pred             cchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhc---------ccCcchHHHHHHHHH
Q 036775            4 RDVVSWTTMIGGYAE-----RGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACS---------SISALSFGQYVHSYI   68 (293)
Q Consensus         4 p~~~~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~   68 (293)
                      ++...|...+.+-..     .+++++|++.|++..+   ..|+ ...|..+..++.         ..+++++|...++++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            456667777766432     2346799999999988   4454 344544443332         334578999999998


Q ss_pred             HhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775           69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV  145 (293)
Q Consensus        69 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  145 (293)
                      .+  --|.+...+..+...+...|++++|...|++..+.   +...+..+..++...|++++|...+++..+.... +..
T Consensus       331 l~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~  407 (553)
T PRK12370        331 TE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA  407 (553)
T ss_pred             Hh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence            87  44557778888888999999999999999998764   3457888889999999999999999999887544 222


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNAC  222 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~  222 (293)
                      .+..++..+...|++++|...++++.+ .. +| +...+..+..+|...|+.++|...++++ ...|+.. ..+.+...|
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~  485 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY  485 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            333444456678899999999999875 22 34 3455777888899999999999999988 4455544 344445556


Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      ...|  +.+...++.+.+.......-+..+-..+.-.|+-+.+..+ +++.+.|
T Consensus       486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            7777  4777777776664421111122244445555666666555 7776543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.59  E-value=1.5e-12  Score=99.67  Aligned_cols=198  Identities=10%  Similarity=0.022  Sum_probs=151.1

Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      .....+..+...+...|++++|.+.+++..+.   +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence            33556677778888888888888888877653   3456777778888888888888888888776433 5566777777


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~  230 (293)
                      .+...|++++|.+.++...+....+.....+..+..++...|++++|...+++. ...| +...+..+...+...|+++.
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            888888999999888888762222233456677788888899999999988887 3333 34567777788888999999


Q ss_pred             chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      |...+++..+..+.++..+..++..+...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999888877666777777888888889999999998887755

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=2.6e-12  Score=100.98  Aligned_cols=115  Identities=15%  Similarity=0.177  Sum_probs=58.5

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +..||..+|.++++-...+.|.+++++-.... .+.+..+||.+|.+-+-.    ...++..+|.. ..+.||..++|++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis-qkm~Pnl~TfNal  279 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEMIS-QKMTPNLFTFNAL  279 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHHHH-hhcCCchHhHHHH
Confidence            44555666666666655666666666555444 455555565555543211    11445555555 4555666666666


Q ss_pred             HHHHHHcCCHHHHHH----HHHHhh----hCCcccHHHHHHHHHhcCCH
Q 036775           85 INMYVKCGDVGIAIQ----VFNMLA----YKDMISWSTVISGLAMNGCG  125 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~~~~  125 (293)
                      +++..+.|+++.|.+    ++.+|+    +|...+|..+|..+++.++.
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp  328 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP  328 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence            666666555544332    222332    23444444444444444444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.3e-14  Score=114.88  Aligned_cols=220  Identities=10%  Similarity=0.058  Sum_probs=181.8

Q ss_pred             cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------------------------
Q 036775           57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------------------------  107 (293)
Q Consensus        57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------------------  107 (293)
                      +..+|...|.....  .+.-+..+...+..+|...+++++|+++|+.+.+.                             
T Consensus       334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence            56778888888554  34444466678899999999999999999988632                             


Q ss_pred             --------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc
Q 036775          108 --------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ  179 (293)
Q Consensus       108 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  179 (293)
                              .+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+-.-+.....+|.|...|+....   +.|.
T Consensus       412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r  487 (638)
T KOG1126|consen  412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR  487 (638)
T ss_pred             HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence                    4578999999999999999999999999875432 678898888888899999999999999874   2332


Q ss_pred             -hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775          180 -TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF  256 (293)
Q Consensus       180 -~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  256 (293)
                       -..|.-|.-.|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++...+|.++.+--..+..+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence             345666788899999999999999998 67774 445555666689999999999999999999999998888888999


Q ss_pred             hcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775          257 AGADRWEDANKIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       257 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~  284 (293)
                      ...+++++|...++++++  +.|+....
T Consensus       568 ~~~~~~~eal~~LEeLk~--~vP~es~v  593 (638)
T KOG1126|consen  568 FSLGRYVEALQELEELKE--LVPQESSV  593 (638)
T ss_pred             HhhcchHHHHHHHHHHHH--hCcchHHH
Confidence            999999999999999987  66766543

>PF13041 PPR_2: PPR repeat family

Probab=99.57  E-value=1e-14  Score=82.51  Aligned_cols=50  Identities=34%  Similarity=0.585  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS   54 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~   54 (293)
                      ||+.+||++|.+|++.|++++|+++|++|.+.| ++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence            899999999999999999999999999999999 99999999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.57  E-value=4.3e-12  Score=97.12  Aligned_cols=196  Identities=12%  Similarity=0.024  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      ....+..+...+...|++++|.+.+++..+  ..+.+...+..+...+...|++++|.+.+++..+.   +...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            344555566666666666666666666655  23344555566666666666666666666666542   3344555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL  196 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  196 (293)
                      .+...|++++|.+.+++.......| ....+..+..++...|++++|...+++..+  ..+.+...+..+...+...|++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCH
Confidence            6666667777777766665532211 233455555666667777777777766664  1223344566666666777777


Q ss_pred             HHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          197 EEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       197 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ++|...+++. ...| +...+..+...+...|+.+.+..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777766665 2222 333444555556666777776666655544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.57  E-value=3.2e-11  Score=106.45  Aligned_cols=262  Identities=9%  Similarity=0.006  Sum_probs=186.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG   92 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (293)
                      ...+...|++++|+++|+++.+..  +-|+..+..++..+...++.++|.+.++.+.+   ..|+...+..++..+...+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcc
Confidence            456777788888888888887753  33355556667777888888888888888765   3444444544444444455


Q ss_pred             CHHHHHHHHHHhhhCCc---------------------------------------------------------------
Q 036775           93 DVGIAIQVFNMLAYKDM---------------------------------------------------------------  109 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~~~---------------------------------------------------------------  109 (293)
                      +..+|++.++++.+.++                                                               
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r  263 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER  263 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            55557777776652100                                                               


Q ss_pred             ---------------------c----cHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775          110 ---------------------I----SWS----TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus       110 ---------------------~----~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                                           .    .|.    -.+-++...|+..++++.|+.+...|.+....+-..+..+|...+++
T Consensus       264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P  343 (822)
T PRK14574        264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP  343 (822)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence                                 0    000    12334556778888888888888888766667888889999999999


Q ss_pred             hHHHHHHHHhhhhcC----CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCC-C-------------c--hHhH-HHHHH
Q 036775          161 DQGLILFKAMSTVYE----IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI-E-------------A--EWSV-WGALL  219 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-------------~--~~~~-~~~l~  219 (293)
                      ++|..+++.+....+    .+++......|..+|...+++++|..+++.+.. .             |  |... ...++
T Consensus       344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a  423 (822)
T PRK14574        344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV  423 (822)
T ss_pred             HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence            999999999865321    123444457788999999999999999988821 1             2  2222 33345


Q ss_pred             HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      ..+...|+...|++.++.+....|.|......+...+...|.+.+|.+.++....  +.|+.
T Consensus       424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~  483 (822)
T PRK14574        424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS  483 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence            5578899999999999999888899999999999999999999999999976554  35554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=7.2e-12  Score=98.56  Aligned_cols=270  Identities=13%  Similarity=0.174  Sum_probs=187.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHH-HHHHHHHHhh-----------
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFG-QYVHSYISTR-----------   71 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~-----------   71 (293)
                      +.+=|.|++ ....|.+..+.-+|+.|+..| .+.++..-..+++.  |-...+.--+ .+-|-.|...           
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G  193 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG  193 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence            345566666 566889999999999999988 77777665555554  2222221111 1122222210           


Q ss_pred             -------cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775           72 -------YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGV  140 (293)
Q Consensus        72 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  140 (293)
                             .-.|.+..++.++|.++|+-...+.|.+++++....    +..+||.+|.+-.-..    ..+++.+|....+
T Consensus       194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm  269 (625)
T KOG4422|consen  194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM  269 (625)
T ss_pred             cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence                   134667889999999999999999999999988754    6677888887654333    2789999999999


Q ss_pred             CCcHhHHHHHHHHHhcCCChhH----HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH-HHHHHHhC---------
Q 036775          141 FPDDVTFIALISACSHGGLVDQ----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE-AEAFIREM---------  206 (293)
Q Consensus       141 ~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~---------  206 (293)
                      +||..|||+++.+..+.|+++.    |.+++.+|++ -|+.|...+|..+|..+++.++..+ |..++.++         
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f  348 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF  348 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence            9999999999999999998765    5678888887 7999999999999999888777644 44444443         


Q ss_pred             -CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-----CCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          207 -PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-----GVSV---GTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       207 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                       ...| |...+..-+..|.+..+.+.|.++-.-+..+.     +++.   .-|..+..+.+.....+.....|+.|.-.-
T Consensus       349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~  428 (625)
T KOG4422|consen  349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA  428 (625)
T ss_pred             cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence             2334 34466777777888888888887776666543     3321   124455555666666666666666665544


Q ss_pred             CCCCCc
Q 036775          277 LKKKTG  282 (293)
Q Consensus       277 ~~p~~~  282 (293)
                      +-|++.
T Consensus       429 y~p~~~  434 (625)
T KOG4422|consen  429 YFPHSQ  434 (625)
T ss_pred             ecCCch
Confidence            444444

>PF13041 PPR_2: PPR repeat family

Probab=99.55  E-value=2e-14  Score=81.24  Aligned_cols=50  Identities=34%  Similarity=0.529  Sum_probs=40.3

Q ss_pred             CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775          107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH  156 (293)
Q Consensus       107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  156 (293)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56778888888888888888888888888888888888888888887764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.54  E-value=8.3e-12  Score=103.34  Aligned_cols=232  Identities=13%  Similarity=0.081  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhh----cC-CCCchhH-HHHHHHHHHHcCCHHHHHHHHHHhhhC--------
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTR----YD-LSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYK--------  107 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~--------  107 (293)
                      ..+...+...|...|+++.|..++++....    .| ..|...+ .+.+...|...+++++|..+|+++..-        
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345555667777777777777777776651    12 1233322 244667788888888888888877631        


Q ss_pred             ---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CcH-hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC--
Q 036775          108 ---DMISWSTVISGLAMNGCGRQALQLFSLMII-----NGVF-PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYE--  175 (293)
Q Consensus       108 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--  175 (293)
                         -..+++.|..+|.+.|++++|...+++..+     .|.. |.+ .-++.+...++..+++++|..+++...+...  
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence               224577777788888888888777776543     1222 222 3456666778888999999988887654221  


Q ss_pred             CCc----chhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775          176 IVP----QTQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       176 ~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  241 (293)
                      ..+    -..+++.|...|...|++++|.+++++.         +..+. ...++.+...|.+.+.+..|.++|.+....
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            111    2367899999999999999999999887         11222 346777888899999999898888765542


Q ss_pred             ----c---CCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          242 ----K---GVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       242 ----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                          +   |....+|..|+..|.+.|+++.|.++.+...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                1   3345689999999999999999999988765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.2e-11  Score=98.05  Aligned_cols=164  Identities=5%  Similarity=-0.021  Sum_probs=139.1

Q ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      .+.|+..+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|...++...|.+-++...+  -.+.|-..|-.|.
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLG  405 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLG  405 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhh
Confidence            4567777778888888999999999999887654 567788888889999999999999999886  3456778899999


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHH
Q 036775          188 DMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDA  265 (293)
Q Consensus       188 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  265 (293)
                      .+|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|...|+.....+..+...+..|...|-+.++.++|
T Consensus       406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999988 5555 5668999999999999999999999999888877888899999999999999999


Q ss_pred             HHHHHHHHH
Q 036775          266 NKIRDEIRR  274 (293)
Q Consensus       266 ~~~~~~m~~  274 (293)
                      ...|+.-.+
T Consensus       486 a~~yek~v~  494 (559)
T KOG1155|consen  486 AQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHH
Confidence            988887654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=4.8e-12  Score=102.57  Aligned_cols=270  Identities=11%  Similarity=-0.060  Sum_probs=220.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      |+..--.-.+-+...+++.+..++++.....  .+++...+..-|.++...|+..+-..+-.++..  ..|..+.+|-++
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aV  318 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAV  318 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhH
Confidence            4444455566777889999999999999887  467777777778888999999888888888887  678888999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ...|...|...+|.+.|.+...-|   ...|-.....|+-.|..++|+..|....+.=.. ....+.-+.--|.+.++.+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence            999999999999999999877544   457999999999999999999999887653111 1122233344578899999


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCc-hHhHHHHHHHHHHhcCChhhch
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--------PIEA-EWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      .|.++|.+...  -.+.|+.+.+-+.-.....+.+.+|..+|+..        +..+ -..+++.|.++|.+.+.+++|.
T Consensus       398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999999884  44567788888888888899999999999876        1112 3457888999999999999999


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC  283 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  283 (293)
                      ..+++.....|.++.+|..+.-.|...|+++.|.+.|.+-.  .+.|+...
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~  524 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF  524 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence            99999999999999999999999999999999999998754  47777643

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=3e-11  Score=100.18  Aligned_cols=258  Identities=12%  Similarity=0.004  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      |-....+..+.|+.+.|.+.+.+..+.   .|+..  .-......+...|+++.|...++.+.+  ..|.+..+...+..
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~~~l~ll~~  195 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAARHGVDKLLE--MAPRHKEVLKLAEE  195 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            344456788889999999999998763   45543  333457778889999999999999988  44667778899999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC---CcccHHH----HHHHHHhcCCHHHHHHHHHHHHhCCC---CCcHhHHHHHHHHHhc
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK---DMISWST----VISGLAMNGCGRQALQLFSLMIINGV---FPDDVTFIALISACSH  156 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~  156 (293)
                      .+...|++++|.+.++...+.   +...+..    ........+..+++.+.+..+.+...   +.+...+..+...+..
T Consensus       196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~  275 (409)
T TIGR00540       196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID  275 (409)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999999865   2222321    11122333333334445555554322   1377888899999999


Q ss_pred             CCChhHHHHHHHHhhhhcCCCcchhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCchH---hHHHHHHHHHHhcCChh
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQTQH---YACVVDMYGRAGLLEEAEAFIREM-PIEAEW---SVWGALLNACRIHRNDE  229 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~  229 (293)
                      .|+.++|.+.+++..+.   .|+...   ...........++.+.+.+.++.. ...|+.   ....++...+.+.|+++
T Consensus       276 ~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~  352 (409)
T TIGR00540       276 CDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI  352 (409)
T ss_pred             CCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence            99999999999999862   233321   122222233457788888888777 334433   45667888899999999


Q ss_pred             hchHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          230 MFDPIRQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       230 ~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +|...|+...... .|++..+..+...+.+.|+.++|.+++++-..
T Consensus       353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999533322 45666788999999999999999999997543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=5.7e-11  Score=90.27  Aligned_cols=263  Identities=12%  Similarity=0.067  Sum_probs=179.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHcCC
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGD   93 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~   93 (293)
                      +.-+.+.++|+++|-+|.+.  -+-+..+..++.+.+.+.|..+.|.++.+.+....+.+.+..  ....|..-|...|-
T Consensus        45 fLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          45 FLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             HHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence            33457889999999999874  244455667788889999999999999999877333333322  23567788889999


Q ss_pred             HHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCCChhHHHHH
Q 036775           94 VGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQGLIL  166 (293)
Q Consensus        94 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~  166 (293)
                      +|.|+.+|..+.+.   -......|+..|-..++|++|+++-+++.+.|..+..    ..|..+...+....+++.|..+
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999988764   3345667888888889999999988888877655432    3456666666677778888888


Q ss_pred             HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH--hHHHHHHHHHHhcCChhhchHHHHHHHhhc-
Q 036775          167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW--SVWGALLNACRIHRNDEMFDPIRQELVNKK-  242 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  242 (293)
                      +.+..+. . +-.+..--.+.+.+...|+++.|.+.++.. ...|+.  .+...|..+|.+.|+.++...++....+.. 
T Consensus       203 l~kAlqa-~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         203 LKKALQA-D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHhh-C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            8777652 1 222333334667777788888888888777 334443  356667777788887777776666554422 


Q ss_pred             -------------------------------CCchhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          243 -------------------------------GVSVGTFALMSNTFAG---ADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       243 -------------------------------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                                                     .|+...+..|+.....   .|+..+....++.|....++.++.
T Consensus       281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~  354 (389)
T COG2956         281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR  354 (389)
T ss_pred             CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence                                           2344455556655442   355677777777777665554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.6e-11  Score=96.27  Aligned_cols=248  Identities=15%  Similarity=0.070  Sum_probs=184.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV   94 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   94 (293)
                      .-...++++|+++|+++.++.+.+. |..+|+.++-+-.....+.--.+....+   ...  -+.|+.++.+-|+-.++.
T Consensus       272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i---dKy--R~ETCCiIaNYYSlr~eH  346 (559)
T KOG1155|consen  272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKY--RPETCCIIANYYSLRSEH  346 (559)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccC--CccceeeehhHHHHHHhH
Confidence            3345678888888888877654433 3567776665433222221111111111   223  344667888889999999


Q ss_pred             HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775           95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus        95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      ++|...|++..+-   ....|+.+.+-|...++...|.+.|+...+-+.. |-..|-.+..+|.-.+...-|+-+|++..
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            9999999999865   4567999999999999999999999999987554 88899999999999999999999999998


Q ss_pred             hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCc
Q 036775          172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK----GVS  245 (293)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~  245 (293)
                      .  -.+-|...|.+|..+|.+.++.++|+..|++.  ....+...+..|...|-+.++..+|...+++-.+..    ..+
T Consensus       426 ~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~  503 (559)
T KOG1155|consen  426 E--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID  503 (559)
T ss_pred             h--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence            6  33557889999999999999999999999998  223455789999999999999999999998766522    222


Q ss_pred             h---hhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          246 V---GTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       246 ~---~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      +   ..-..|..-+.+.+++++|..+...
T Consensus       504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  504 DETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            2   2333466667777777777665443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=3.3e-11  Score=95.75  Aligned_cols=243  Identities=13%  Similarity=0.084  Sum_probs=172.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH-HHHHh----------------------------------cccCcc
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN-VLSAC----------------------------------SSISAL   58 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~----------------------------------~~~~~~   58 (293)
                      ..+.+.|+++.|+++++-+.+......+...-+. .+...                                  ...|++
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence            3578899999999999988775422222111111 11111                                  123566


Q ss_pred             hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh---hCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775           59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDMISWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                      ++|.+.+++... ....-....| .+.-.+-..|++++|+.+|-++.   ..+..+.-.+.+.|-...++..|++++-+.
T Consensus       507 dka~~~ykeal~-ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALN-NDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHc-CchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            666666666544 1111112222 22334555677777777775543   235555666667777777777777777665


Q ss_pred             HhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhH
Q 036775          136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSV  214 (293)
Q Consensus       136 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~  214 (293)
                      ... ++-|+.....|...|-+.|+-.+|.+.+-.--+  -++.+..+...|..-|....-+++++.+|++. -+.|+..-
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence            443 444677788888889999999999988776654  45678888888888888999999999999998 57899999


Q ss_pred             HHHHHHHH-HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          215 WGALLNAC-RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       215 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      |..++..| .+.|+++.|..+++...+..|-+..+...|++.+...|.
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            99988875 788999999999999999999999999999999998875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2.5e-10  Score=86.82  Aligned_cols=195  Identities=12%  Similarity=0.077  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +--+|-+.|.+.|.++.|+.+-+.+.++.+.+-+..  ...-+..-|...|-++.|+.+|..+.....+.  ......|+
T Consensus        71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa--~~AlqqLl  148 (389)
T COG2956          71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA--EGALQQLL  148 (389)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh--HHHHHHHH
Confidence            344566788899999999999999887643333333  33345566889999999999999987732233  33447889


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHH--------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWS--------TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG  157 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  157 (293)
                      ..|....+|++|+++-+++.+.+...|+        -+...+....+.+.|..++.+..+.+.+ .+..-..+-......
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~  227 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAK  227 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhc
Confidence            9999999999999999988876554444        4445555678899999999998877544 444445566778889


Q ss_pred             CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      |+++.|.+.++...+ .+..--..+...|..+|...|+.++...++.++
T Consensus       228 g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         228 GDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             cchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999887 454444567888899999999999998888776

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.47  E-value=4.2e-10  Score=87.94  Aligned_cols=264  Identities=10%  Similarity=0.050  Sum_probs=192.2

Q ss_pred             HHHHHHH--cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775           12 MIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV   89 (293)
Q Consensus        12 li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   89 (293)
                      +..+..+  .|+|.+|.++..+-.+.+  +-....|..-..+.-+.|+.+.+...+.++.+ ..-.++....-+......
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll  164 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHH
Confidence            4444443  589999999999877654  22334555666778889999999999999877 444566666777888888


Q ss_pred             HcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCC
Q 036775           90 KCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGL  159 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~  159 (293)
                      ..|+++.|..-.++..+   ..+.......++|.+.|++.++..++..|.+.|.--++       .+|..++.-....+.
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999988887764   36778888999999999999999999999998876544       356666666666666


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---------------------------------
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---------------------------------  206 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------------------------------  206 (293)
                      .+.-.+.|+..-+  ..+-++..-.+++.-+.+.|+.++|.++.++.                                 
T Consensus       245 ~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         245 SEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             chHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            6666666666654  33444555556666777777777777766543                                 


Q ss_pred             CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          207 PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      ....++..+.+|...|.+++.+.+|...|+...+. .++..+|+.+..++.+.|+..+|.+++++-...-.+|+.
T Consensus       323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            01123345777777788888888888888855553 447788888888888888888888888876654445544

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=4.9e-11  Score=102.61  Aligned_cols=228  Identities=8%  Similarity=-0.084  Sum_probs=170.1

Q ss_pred             CchHHHHHHHHHHhc-----ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH---------cCCHHHHHHHHHHh
Q 036775           39 EPNEATLVNVLSACS-----SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK---------CGDVGIAIQVFNML  104 (293)
Q Consensus        39 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~  104 (293)
                      +.+...|...+++-.     ..+++++|...+++..+  ..|.+...|..+..++..         .+++++|...+++.
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            344555666666531     22456789999999876  334455566666655542         24489999999998


Q ss_pred             hhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-h
Q 036775          105 AYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-T  180 (293)
Q Consensus       105 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~  180 (293)
                      .+.   +..++..+...+...|++++|...|++..+.++. +...+..+..++...|++++|...+++..+.   .|+ .
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~  406 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRA  406 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCh
Confidence            864   5567888888899999999999999999987543 5667888888999999999999999999863   343 2


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC--CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM--PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      ..+..++..+...|++++|...+++.  ...|+ ...+..+..++...|+.++|...++++....+.+....+.+...|.
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence            33344455677789999999999887  22354 3346667777889999999999999987777766777788888888


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 036775          258 GADRWEDANKIRDEIRR  274 (293)
Q Consensus       258 ~~g~~~~a~~~~~~m~~  274 (293)
                      ..|  ++|...++.+.+
T Consensus       487 ~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        487 QNS--ERALPTIREFLE  501 (553)
T ss_pred             ccH--HHHHHHHHHHHH
Confidence            888  478887777765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.45  E-value=5.3e-10  Score=98.89  Aligned_cols=259  Identities=11%  Similarity=0.019  Sum_probs=164.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK   90 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   90 (293)
                      .++..+...|+.++|+..+++....  .+........+...+...|++++|.++++.+.+  ..|.+...+..++..+..
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~--~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLK--KDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHhh
Confidence            6666677777777777777776521  122223333334566677788888888888776  444455666677777777


Q ss_pred             cCCHHHHHHHHHHhhhCCcccHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH-----
Q 036775           91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAM--NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----  163 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-----  163 (293)
                      .++.++|++.++++...+......+..++..  .++..+|++.++++.+.... +...+..+..++.+.|-...|     
T Consensus       149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            7888888888877776544332223333333  45555588888888776432 444555555555544432222     


Q ss_pred             -------------------------------------------HHHHHHhhhhcCCCcch-hHH----HHHHHHHHhcCC
Q 036775          164 -------------------------------------------LILFKAMSTVYEIVPQT-QHY----ACVVDMYGRAGL  195 (293)
Q Consensus       164 -------------------------------------------~~~~~~~~~~~~~~~~~-~~~----~~l~~~~~~~g~  195 (293)
                                                                 +.-++.+....+-.|.. ..|    --.+.++...|+
T Consensus       228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence                                                       22222222211111321 111    233456778899


Q ss_pred             hHHHHHHHHhCCCCc---hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHHHHHHHHhcCCCHHHHH
Q 036775          196 LEEAEAFIREMPIEA---EWSVWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       196 ~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      ..++++.++.++..+   -..+-..+..+|...+.+++|..+++.+....      +++......|..++...+++++|.
T Consensus       308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~  387 (822)
T PRK14574        308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY  387 (822)
T ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence            999999999994222   12245667888999999999999999987654      223444678999999999999999


Q ss_pred             HHHHHHHH
Q 036775          267 KIRDEIRR  274 (293)
Q Consensus       267 ~~~~~m~~  274 (293)
                      .+++.+.+
T Consensus       388 ~~l~~~~~  395 (822)
T PRK14574        388 QFAVNYSE  395 (822)
T ss_pred             HHHHHHHh
Confidence            99999987

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.6e-11  Score=93.41  Aligned_cols=223  Identities=8%  Similarity=-0.063  Sum_probs=164.7

Q ss_pred             HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhc
Q 036775           46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMN  122 (293)
Q Consensus        46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~  122 (293)
                      +-+.++|.+.|.+.+|.+.++...+   -.|-+.+|..|-..|.+..+.+.|+.+|.+..+.   |+....-+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            3456677777888888777777655   3455666777777788888888888888777653   333344456667777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 036775          123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF  202 (293)
Q Consensus       123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  202 (293)
                      ++.++|.++|+...+... .++....++...|.-.++.+-|..+++++.+ .|+ .+...|+.+.-+|.-.++++-++.-
T Consensus       304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            888888888887776533 3666777777777778888888888888877 454 4566677777777778888888877


Q ss_pred             HHhC---CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          203 IREM---PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       203 ~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      |++.   -..|  -...|..+-......|++..|.+.|+.....++.+...++.|...-.+.|++++|..+++....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            7776   1123  2346777777778888999999999888888888888999999889999999999999987655

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.44  E-value=7.4e-12  Score=106.43  Aligned_cols=241  Identities=11%  Similarity=0.053  Sum_probs=146.6

Q ss_pred             HHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775           27 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        27 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      .++-.+...| +.||..||..+|.-|+..|+.+.|- +|..|+. ...+.+...++.++.+....++.+.+.       +
T Consensus        11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------e   80 (1088)
T KOG4318|consen   11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------E   80 (1088)
T ss_pred             hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-------C
Confidence            3456677777 8999999999999999999999888 8888888 678888888899998888888877665       6


Q ss_pred             CCcccHHHHHHHHHhcCCHHHHHHHHHH-HH-------hCCCCCcHhHHHHHHHH--------------HhcCCChhHHH
Q 036775          107 KDMISWSTVISGLAMNGCGRQALQLFSL-MI-------INGVFPDDVTFIALISA--------------CSHGGLVDQGL  164 (293)
Q Consensus       107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~g~~p~~~~~~~ll~~--------------~~~~~~~~~a~  164 (293)
                      |...+|+.|..+|.++||... ++..++ |.       ..|+..-+.-|-..+.+              ..-.|-++.+.
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            778889999999999998765 222222 21       22332111222111111              11222333333


Q ss_pred             HHHHHhhhhcCCCcchhHHHHHHHHHHh-cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-
Q 036775          165 ILFKAMSTVYEIVPQTQHYACVVDMYGR-AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK-  242 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  242 (293)
                      +++..+-......|...    +++-... ...+++-..+-+.....|+..++..++.+-...|+.+.|..++..|.+.+ 
T Consensus       160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            33322221011111111    1222211 12233333333333225777777777777777777777777777777665 


Q ss_pred             CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      |..+.-|-.|+-+   .++..-+..+++-|++.|+.|+..++-
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence            5555555555544   666777777777777777777777654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.43  E-value=5.3e-10  Score=95.55  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=84.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775          179 QTQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT  255 (293)
Q Consensus       179 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  255 (293)
                      +...|.-+.++|...|++.+|+.+|..+-   ...+...|-.+..+|...|.++.|...++......|.+...-..|...
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl  492 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL  492 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence            34568888899999999999999999992   223466899999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHH
Q 036775          256 FAGADRWEDANKIRDEIR  273 (293)
Q Consensus       256 ~~~~g~~~~a~~~~~~m~  273 (293)
                      +.+.|+.++|.+++..|.
T Consensus       493 ~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  493 YQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHhcCCHHHHHHHHhccc
Confidence            999999999999998875

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.43  E-value=3.2e-10  Score=93.87  Aligned_cols=270  Identities=11%  Similarity=0.047  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      .|-.....+-..|++..|..++......  .+.+...|...+..-....+++.|..+|.+..   +..|+..+|.--+..
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~  660 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANL  660 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHH
Confidence            3444444444555555555555555443  22334455555555555555555555555542   244444444444444


Q ss_pred             HHHcCCHHHHHHHHHHhh----------------------------------hC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775           88 YVKCGDVGIAIQVFNMLA----------------------------------YK---DMISWSTVISGLAMNGCGRQALQ  130 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~----------------------------------~~---~~~~~~~li~~~~~~~~~~~a~~  130 (293)
                      ---.+..++|.+++++..                                  +.   .+..|-.|...--+.|++-.|..
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence            444444555555444443                                  22   33456566666666667777777


Q ss_pred             HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 036775          131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA  210 (293)
Q Consensus       131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  210 (293)
                      ++++.+-.++. +...|...|..-.+.|..+.|..+..+..+  .++.+...|..-|....+.++-.++.+.+++....|
T Consensus       741 ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp  817 (913)
T KOG0495|consen  741 ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP  817 (913)
T ss_pred             HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence            77776665554 666777777777777777777777766665  455555666666666666666666666666665444


Q ss_pred             hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeec
Q 036775          211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN  289 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~  289 (293)
                      .+  .-.+...+-....++.|...|.+..+.+|.+-.+|..+..-+.+.|.-++-.++++....  -.|..+..|+.+.
T Consensus       818 hV--llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS  892 (913)
T KOG0495|consen  818 HV--LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS  892 (913)
T ss_pred             hh--HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence            43  344555577788899999999999999999999999999999999999999999987765  5788887776553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=2e-11  Score=92.93  Aligned_cols=228  Identities=11%  Similarity=0.005  Sum_probs=191.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775           10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV   89 (293)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   89 (293)
                      +-+-.+|.+.|-+.+|.+-|+...+   ..|-+.||..+-++|.+..+...|..++.+-.+  ..|.++.........+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence            4567889999999999999999888   568888999999999999999999999999876  56666655577788888


Q ss_pred             HcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775           90 KCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL  166 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  166 (293)
                      ..++.++|.++|+...+.   ++.....+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            899999999999988764   5666667777888899999999999999999987 888999999999999999999999


Q ss_pred             HHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          167 FKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       167 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      |++... .--.|+  ..+|..+.......|++.-|.+.|+-.  ....+...++.|.-.-.+.|+++.|..+++......
T Consensus       381 f~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            998876 222343  356888888888999999999999887  334456688888888899999999999998887766


Q ss_pred             CC
Q 036775          243 GV  244 (293)
Q Consensus       243 ~~  244 (293)
                      |.
T Consensus       460 P~  461 (478)
T KOG1129|consen  460 PD  461 (478)
T ss_pred             cc
Confidence            53

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.40  E-value=1.8e-09  Score=89.54  Aligned_cols=270  Identities=11%  Similarity=-0.019  Sum_probs=225.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      -.||+.-.+.|.+.+.++-|..+|....+-  .+-+...|.-....--..|..++...+++.+..  .+|.....|....
T Consensus       516 ~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~a  591 (913)
T KOG0495|consen  516 KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYA  591 (913)
T ss_pred             HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHH
Confidence            357888888999999999999999998885  455567777777777778899999999999988  6777888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      .-+...|++..|..++.+.-+.   +...|..-+.....+..++.|..+|.+...  ..|+...|..-+....-.++.++
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ee  669 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEE  669 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHH
Confidence            8999999999999999988764   566898999999999999999999998876  46677777777777778899999


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      |.+++++..+  .++.=...|..+...+.+.++.+.|...|..- +.-|+.. .|-.|...--+.|+.-.|..++++..-
T Consensus       670 A~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  670 ALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            9999999986  44444567888899999999999999988776 5556554 677777777788899999999999999


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      .+|.+...|...|++-.+.|+.+.|..++-+..+.  =|+.+..|
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LW  790 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLW  790 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhH
Confidence            99999999999999999999999999988765442  35555555

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.37  E-value=2.2e-09  Score=85.08  Aligned_cols=220  Identities=8%  Similarity=-0.079  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           21 FCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                      +.+.++.-+.++.......|+  ...|..+...+...|+.+.|...|++..+  ..|.+...|+.+...+...|++++|.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            345566666666543222232  23455555566667777777777776665  33445566677777777777777777


Q ss_pred             HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      +.|++..+.   +..+|..+..++...|++++|.+.|++..+..  |+..........+...++.++|...++....  .
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~  194 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K  194 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence            777766543   33456666666666777777777777766543  2222111112223345566777777755443  2


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHH--HHHHHhC-CCC----c-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775          176 IVPQTQHYACVVDMYGRAGLLEEA--EAFIREM-PIE----A-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG  247 (293)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~-~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  247 (293)
                      .+|+...+ .+  .+...|+..++  ...+.+. ...    | ....|..+...+...|+.++|...|++..+..|++..
T Consensus       195 ~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        195 LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            22322211 12  22223444332  2222111 111    1 2235666666667777777777777777666655443


Q ss_pred             hH
Q 036775          248 TF  249 (293)
Q Consensus       248 ~~  249 (293)
                      -+
T Consensus       272 e~  273 (296)
T PRK11189        272 EH  273 (296)
T ss_pred             HH
Confidence            33

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.34  E-value=8.7e-10  Score=87.34  Aligned_cols=213  Identities=11%  Similarity=-0.025  Sum_probs=153.3

Q ss_pred             CcchHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775           56 SALSFGQYVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQ  130 (293)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~  130 (293)
                      +..+.+..-+.++.......|+  ...|..+...|.+.|+.++|...|++..+.   +...|+.+...+...|++++|.+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4556667777777652223332  355788888999999999999999998864   56789999999999999999999


Q ss_pred             HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 036775          131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PI  208 (293)
Q Consensus       131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~  208 (293)
                      .|++..+.... +..++..+..++...|++++|.+.++...+.   .|+..........+...++.++|...|++.  ..
T Consensus       120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            99999876433 4677888888899999999999999999862   343322222223345678899999999765  22


Q ss_pred             CchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNK-------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      .|+.  |. ........|+...+ ..++.+.+.       .+.....|..+...+.+.|++++|...|++..+.+
T Consensus       196 ~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        196 DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3332  22 12223345665544 344555432       23345689999999999999999999999988754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.34  E-value=6.9e-09  Score=88.99  Aligned_cols=265  Identities=9%  Similarity=0.031  Sum_probs=187.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +..--.........|+.++|.+++.+..+.  .+.+...|..|...|-..|+.+++...+-.+..  -.|.|...|..+.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~la  214 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence            333333444445559999999999999887  466778899999999999999999887766654  6667888999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCC
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWS---TVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGG  158 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~  158 (293)
                      ....+.|+++.|.-+|.+..+.++.-|.   --+..|-+.|+...|...|.++.....+.|-    .+.-..+..+...+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999875444333   3456788889999999999988876442222    22333455566667


Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--------------------------------
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--------------------------------  206 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------------------------------  206 (293)
                      +.+.|.+.++....+.+-..+...++.++..|.+...++.|......+                                
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            777788777777653333444556666666666666666665544322                                


Q ss_pred             --------------------------------C--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC-CchhhHHH
Q 036775          207 --------------------------------P--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG-VSVGTFAL  251 (293)
Q Consensus       207 --------------------------------~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~  251 (293)
                                                      .  ..-++..|.-+..++...|.+..|..++..+....+ .+...|-.
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence                                            0  011233456666677788888888888888777663 34567888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH
Q 036775          252 MSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       252 li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +..+|...|.+++|.+.|+....
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHh
Confidence            88888888888888888887665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.33  E-value=8.4e-09  Score=80.83  Aligned_cols=227  Identities=10%  Similarity=0.004  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..-..+--+.|+.+.+-.++.+..+.. -.++.....+..+.....|+...|..-..++.+  --+.++.+......
T Consensus       119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~--~~pr~~~vlrLa~r  195 (400)
T COG3071         119 LAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARENVDQLLE--MTPRHPEVLRLALR  195 (400)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHH--hCcCChHHHHHHHH
Confidence            345555566667778888888877776632 233444445555557777777777777777765  33445556677777


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC---------------------------------------------CcccHHHHHHHHHh
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK---------------------------------------------DMISWSTVISGLAM  121 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~---------------------------------------------~~~~~~~li~~~~~  121 (293)
                      +|.+.|++.....++.++.+.                                             ++..--+++.-+.+
T Consensus       196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~  275 (400)
T COG3071         196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR  275 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence            788888877777777776532                                             33445566777788


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775          122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA  201 (293)
Q Consensus       122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  201 (293)
                      .|+.++|.++..+..+.+..|+    ....-.+.+.++.+.-++..+.-....+.  ++..+.+|...|.+.+.|.+|..
T Consensus       276 l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         276 LGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             cCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999988877666    23333566778887777777776653443  44678899999999999999999


Q ss_pred             HHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          202 FIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       202 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      .|+.. +..|+..+|+.+.+++.+.|+..+|.+..++.....
T Consensus       350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            99987 778999999999999999999999999998877543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=9.5e-10  Score=88.17  Aligned_cols=215  Identities=9%  Similarity=-0.033  Sum_probs=176.2

Q ss_pred             hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHH
Q 036775           52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQA  128 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a  128 (293)
                      +.-.|+...+..-|+...+  ..+.+...|--+...|....+.++....|+....-   +..+|..-.+.+.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence            4556888899999999887  33334444777888899999999999999988753   678899999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036775          129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P  207 (293)
Q Consensus       129 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~  207 (293)
                      ..=|++....... +...|..+--+.-+.++++++...|++.++  .++--+++|+.....+...+++++|.+.|+.. .
T Consensus       414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            9999999876443 567777777777899999999999999996  56667789999999999999999999999887 3


Q ss_pred             CCch---------HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          208 IEAE---------WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       208 ~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      +.|.         +...-.++. +.-.+++..|..++++..+.+|.....|..|...-.+.|+.++|+++|++-
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3443         111112221 224489999999999999999999999999999999999999999999864

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.31  E-value=2.1e-10  Score=97.86  Aligned_cols=239  Identities=15%  Similarity=0.131  Sum_probs=166.4

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      .||.+||..+|.-|+..|+.+.|- +|.-|.-.. .+.+...++.++..+...++.+.+.            .|...+|+
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt   87 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------------EPLADTYT   87 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence            488999999999999999999998 999988777 8889999999999999999887654            68888999


Q ss_pred             HHHHHHHHcCCHHH---HHHHHHHhhhC-------Cc---------------ccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775           83 AVINMYVKCGDVGI---AIQVFNMLAYK-------DM---------------ISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus        83 ~l~~~~~~~~~~~~---A~~~~~~~~~~-------~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      .|..+|...||+..   ..+.++.+...       ..               ..-...+....-.|-|+.+++++..+-.
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv  167 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV  167 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999998655   33322222211       00               0111233333445556666666554421


Q ss_pred             CCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhH
Q 036775          138 NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSV  214 (293)
Q Consensus       138 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~  214 (293)
                      ..-   ..++..+++-+..  ......++........+ .|+..+|.+++++-..+|+.+.|..++.+|   +...+...
T Consensus       168 sa~---~~p~~vfLrqnv~--~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy  241 (1088)
T KOG4318|consen  168 SAW---NAPFQVFLRQNVV--DNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY  241 (1088)
T ss_pred             ccc---cchHHHHHHHhcc--CCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence            100   0111123443333  23344555555544223 699999999999999999999999999999   44444444


Q ss_pred             HHHHHHHHHhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHH
Q 036775          215 WGALLNACRIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTFAGADRWED  264 (293)
Q Consensus       215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~  264 (293)
                      |..|+.+   .++...+..+++.|.+.+ .|+..|+...+..+...|....
T Consensus       242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~  289 (1088)
T KOG4318|consen  242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY  289 (1088)
T ss_pred             chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence            4455544   788888889998888876 8889999888888877666433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.29  E-value=3.6e-10  Score=82.07  Aligned_cols=194  Identities=9%  Similarity=0.010  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH  156 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  156 (293)
                      +...|.-.|...|+...|..-+++..+.|+   .+|..+...|.+.|..+.|.+.|++..+.... +....|..-.-+|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            456778888899999999999998887654   46777888888899999999999988876443 55667777777888


Q ss_pred             CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHH
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPI  234 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~  234 (293)
                      .|++++|.+.|++....-...--..+|..+.-+-.+.|+++.|...|++. ...|+ ..+...+.......|++-.|..+
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            88999999999888873223333467888888888889999999988887 44443 33566677777888888899888


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++......+++....-..|+.-.+.|+.+.+-++=..+.+
T Consensus       196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888777666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.29  E-value=7.7e-10  Score=95.35  Aligned_cols=272  Identities=11%  Similarity=0.002  Sum_probs=205.9

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--CCCchH------HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNE------ATLVNVLSACSSISALSFGQYVHSYISTRYDLS   75 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (293)
                      +-+..-|.+...+...|++.+|...|+.....-  ...++.      .+-..+.+..-..++.+.|.+.|..+.+  ..|
T Consensus       450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp  527 (1018)
T KOG2002|consen  450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHP  527 (1018)
T ss_pred             CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCc
Confidence            456677888888889999999999999886650  012222      2333455556677899999999999987  444


Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHH
Q 036775           76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALI  151 (293)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll  151 (293)
                      .-+..|..|+......+...+|..++.....-   ++..++.+...+.+...+..|.+-|....+.- ..+|.++...|.
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG  607 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG  607 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence            44555566665555567888999999888753   67788888889999999999999777765432 235777776776


Q ss_pred             HHHhc------------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCchHhHHHH
Q 036775          152 SACSH------------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGA  217 (293)
Q Consensus       152 ~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~  217 (293)
                      +.|.+            .+..++|+++|.+..+  ..+-|...-|-+.-+++..|++.+|.++|....  ...+..+|-.
T Consensus       608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN  685 (1018)
T KOG2002|consen  608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN  685 (1018)
T ss_pred             HHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence            65542            2457789999998886  445677777888899999999999999999982  2234567889


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      +.++|...|++..|.+.|+...+..  ..++.+...|.+++-+.|++.+|.+.+.....  +.|..
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~  749 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN  749 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence            9999999999999999999888766  45678899999999999999999998866544  44443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.27  E-value=9.2e-09  Score=86.42  Aligned_cols=260  Identities=13%  Similarity=-0.012  Sum_probs=186.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC-   91 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-   91 (293)
                      ...+...|++++|++.++.-.+.  +.............+.+.|+.++|..++..+.+  ..|.+..-|..|..+..-. 
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~--rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID--RNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhhhc
Confidence            34568889999999999886553  444455666777889999999999999999987  4455555556666666333 


Q ss_pred             ----CCHHHHHHHHHHhhhCCc--ccHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           92 ----GDVGIAIQVFNMLAYKDM--ISWSTVISGLAMNGCG-RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        92 ----~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                          .+.+...++|+++.+.-+  .....+.-.+.....+ ..+...+..+...|+++   +|..+-..|....+.+-..
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence                257778888888875422  2222222222222223 34556667777888753   5666666666665655555


Q ss_pred             HHHHHhhhhc-------------CCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHHHHHHHHHhcCC
Q 036775          165 ILFKAMSTVY-------------EIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACRIHRN  227 (293)
Q Consensus       165 ~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~  227 (293)
                      +++.......             .-+|+.  .++..+...|-..|++++|+.++++. ...|+. ..|..-.+.+...|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            6665554310             112444  34466778899999999999999977 667874 478778888999999


Q ss_pred             hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775          228 DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK  279 (293)
Q Consensus       228 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  279 (293)
                      +.+|....+.....+..|...=+-.+..+.+.|+.++|.+++..+.+.+..|
T Consensus       244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~  295 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP  295 (517)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence            9999999999999998888888889999999999999999999887766533

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=2.8e-08  Score=79.81  Aligned_cols=265  Identities=12%  Similarity=0.056  Sum_probs=171.5

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVG   81 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~   81 (293)
                      +|+...|++.|..=.+-..++.|..+|+...-   +.|+..+|.-..+---+.|....+..+|+.+.+..|... +...+
T Consensus       171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf  247 (677)
T KOG1915|consen  171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF  247 (677)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            58888888888888888888888888888876   678888888777777788888888888888777433322 22233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhh--------------------------------------------C---CcccHHH
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAY--------------------------------------------K---DMISWST  114 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------------------------~---~~~~~~~  114 (293)
                      .+....-.++..++.|.-+|+-...                                            .   |-.+|--
T Consensus       248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd  327 (677)
T KOG1915|consen  248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD  327 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence            4444444445556666655543321                                            0   2345666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-------HHHHHHHHH---hcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPDDV-------TFIALISAC---SHGGLVDQGLILFKAMSTVYEIVPQTQHYA  184 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      .++.-...|+.+...++|++.... ++|-..       .|.-+=.+|   ....+.+.+.++++....  -++....|+.
T Consensus       328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFa  404 (677)
T KOG1915|consen  328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFA  404 (677)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHH
Confidence            677777789999999999998765 444221       121111111   256777888888887775  4444555555


Q ss_pred             HHHHHHH----hcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775          185 CVVDMYG----RAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA  259 (293)
Q Consensus       185 ~l~~~~~----~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  259 (293)
                      .+--+|+    ++.++..|.+++... |.-|...++...|..-.+.++++.+..++++..+-.|-+-.+|......-...
T Consensus       405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L  484 (677)
T KOG1915|consen  405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL  484 (677)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence            4443333    466777777777665 66676666666666666667777777777777666666666666655555566


Q ss_pred             CCHHHHHHHHHHHH
Q 036775          260 DRWEDANKIRDEIR  273 (293)
Q Consensus       260 g~~~~a~~~~~~m~  273 (293)
                      |+.+.|..+|.-..
T Consensus       485 gdtdRaRaifelAi  498 (677)
T KOG1915|consen  485 GDTDRARAIFELAI  498 (677)
T ss_pred             hhHHHHHHHHHHHh
Confidence            66666666665443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.24  E-value=7.7e-09  Score=89.39  Aligned_cols=266  Identities=9%  Similarity=0.026  Sum_probs=179.5

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLV   80 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~   80 (293)
                      .|++.-+.|...|.-.|+++.++.+...+....... .-...|..+.+++-..|++++|...|.+..+   ..++  ...
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~  344 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLP  344 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCcccc
Confidence            467778888899999999999999988887753111 2234678888999999999999999888765   3333  344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG----CGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      +..|...|.+.|+++.+...|+.+.+.   +..+...|...|...+    ..+.|..++.+..+.-+ -|...|..+...
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql  423 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQL  423 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence            567888999999999999999988754   3445555556666554    45666666666655432 366677666666


Q ss_pred             HhcCCChhHHHHHHHHhhh---hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCchH------hHHHHH
Q 036775          154 CSHGGLVDQGLILFKAMST---VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P-----IEAEW------SVWGAL  218 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-----~~~~~------~~~~~l  218 (293)
                      +....-+. ++.+|.....   ..+..+..+..|.+...+...|++++|...|+.. +     ..++.      .+-..+
T Consensus       424 ~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl  502 (1018)
T KOG2002|consen  424 LEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL  502 (1018)
T ss_pred             HHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence            55443333 2555443331   1344466677888888888888888888888766 1     11222      122234


Q ss_pred             HHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ....-..++++.|...|+.+.+..|.-+..|..++......+...+|...++....
T Consensus       503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~  558 (1018)
T KOG2002|consen  503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN  558 (1018)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence            44456667778888888888877777777777777555666777777777776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=2.5e-08  Score=72.70  Aligned_cols=195  Identities=11%  Similarity=-0.020  Sum_probs=107.7

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG  123 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~  123 (293)
                      -+.-.|.+.|+...|..-++...+  .-|.+..+|..+...|.+.|+.+.|.+-|++..+-   +..+.|.-.--+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            344445566666666666666555  33344455566666666666666666666655532   4445555555556666


Q ss_pred             CHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF  202 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  202 (293)
                      ++++|...|++....-.-| -..||..+..+..+.|+.+.|...|++..+  -.+-...+...+.....+.|++-.|...
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            6666666666655432111 224555555555666666666666666554  1122234455566666666666666666


Q ss_pred             HHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          203 IREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       203 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      ++..  ...++..+.-..|+.-...|+.+.+.++-..+.+..|-+
T Consensus       196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            6665  223444444445555566666666666666665555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.7e-08  Score=81.15  Aligned_cols=259  Identities=14%  Similarity=0.024  Sum_probs=184.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHHHHHHHH
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMY   88 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~   88 (293)
                      ..-.-|.++|.+++|++.|.+...   .-|| +..|.....+|...|+|+++.+.-....+   +.|+- ..+..-..++
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAH  193 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHH
Confidence            344568889999999999999998   6688 77788888888999999988877766655   34432 3334444455


Q ss_pred             HHcCCHHHHHH----------------------HHHHh---------hh---C---Cc----------------------
Q 036775           89 VKCGDVGIAIQ----------------------VFNML---------AY---K---DM----------------------  109 (293)
Q Consensus        89 ~~~~~~~~A~~----------------------~~~~~---------~~---~---~~----------------------  109 (293)
                      -..|++++|+.                      ++++.         .+   |   +.                      
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~  273 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS  273 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence            55555555542                      22111         00   0   00                      


Q ss_pred             ---------------------------------------ccHH-------HHHHHH-------HhcCCHHHHHHHHHHHH
Q 036775          110 ---------------------------------------ISWS-------TVISGL-------AMNGCGRQALQLFSLMI  136 (293)
Q Consensus       110 ---------------------------------------~~~~-------~li~~~-------~~~~~~~~a~~~~~~m~  136 (293)
                                                             ..++       .+..++       .-.|+.-.|.+-|+...
T Consensus       274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I  353 (606)
T KOG0547|consen  274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI  353 (606)
T ss_pred             ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence                                                   0000       111111       12456666777777776


Q ss_pred             hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hH
Q 036775          137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SV  214 (293)
Q Consensus       137 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~  214 (293)
                      .....++. .|.-+..+|....+.++.++.|+.....  -+-++.+|..-..++.-.+++++|..=|++. .+.|+. ..
T Consensus       354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~  430 (606)
T KOG0547|consen  354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA  430 (606)
T ss_pred             hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence            65444332 2777777888999999999999998862  2345667888888888899999999999988 666654 46


Q ss_pred             HHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036775          215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK  280 (293)
Q Consensus       215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  280 (293)
                      |-.+..+.-+.+.++++...|+...+..|..+.+|+....++..++++++|.+.|+..++  +.|+
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~  494 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccc
Confidence            666776767788999999999999999999999999999999999999999999998766  4454

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.22  E-value=1.3e-09  Score=85.27  Aligned_cols=146  Identities=12%  Similarity=0.025  Sum_probs=75.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH----hcC
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG----RAG  194 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g  194 (293)
                      +...|++++|++++.+-      .+.......+..+.+.++++.|.+.++.|.+ .  ..|. +...+..++.    -.+
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDS-ILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcH-HHHHHHHHHHHHHhCch
Confidence            44456666666655432      2444555555566666666666666666653 1  2222 2222333222    223


Q ss_pred             ChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCH-HHHHHHHHH
Q 036775          195 LLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW-EDANKIRDE  271 (293)
Q Consensus       195 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~  271 (293)
                      ++.+|..+|+++  ...+++.+.+.+..+....|++++|..++++.....|.++.+...++.+....|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            466666666666  22345555555555666666666666666666555555666666666665555555 445555555


Q ss_pred             HHH
Q 036775          272 IRR  274 (293)
Q Consensus       272 m~~  274 (293)
                      ++.
T Consensus       262 L~~  264 (290)
T PF04733_consen  262 LKQ  264 (290)
T ss_dssp             CHH
T ss_pred             HHH
Confidence            544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.22  E-value=5e-10  Score=87.66  Aligned_cols=227  Identities=13%  Similarity=0.062  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC-CchhHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS-VSNLVGNAVI   85 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~   85 (293)
                      ....-+.+++...|+.+.++   .+....  ..|.......+...+....+-+.+..-++.... .... .+..+.....
T Consensus        36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~-~~~~~~~~~~~~~~A  109 (290)
T PF04733_consen   36 ERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLA-DQAGESNEIVQLLAA  109 (290)
T ss_dssp             HHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCC-TS---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHH-hccccccHHHHHHHH
Confidence            33445667788888876543   444332  356666655555555544444455444444333 2223 2333334444


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh----cCCChh
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----HGGLVD  161 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~  161 (293)
                      ..+...|++++|++++.+.  .+.......+..+.+.++++.|.+.++.|.+.+   +..+...+..++.    ....+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHH
Confidence            5677789999999999876  456677788899999999999999999998753   3345555555544    334799


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCCh-hhchHHHHHH
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRND-EMFDPIRQEL  238 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~  238 (293)
                      +|..+|+++.+  ...+++.+.+.+..++...|++++|.+++++. ... .+..+...++......|+. +.+.+++.++
T Consensus       185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            99999999986  55678888999999999999999999999887 333 3556777777777777777 7788888888


Q ss_pred             HhhcCCch
Q 036775          239 VNKKGVSV  246 (293)
Q Consensus       239 ~~~~~~~~  246 (293)
                      ....|..+
T Consensus       263 ~~~~p~h~  270 (290)
T PF04733_consen  263 KQSNPNHP  270 (290)
T ss_dssp             HHHTTTSH
T ss_pred             HHhCCCCh
Confidence            88776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.4e-08  Score=82.90  Aligned_cols=243  Identities=12%  Similarity=-0.023  Sum_probs=190.5

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGN   82 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~   82 (293)
                      +....+..-|.++...|+..+-..+=.++.+.  .|-.+.+|-++.--|...|...+|++.|.....   +.| -...|-
T Consensus       276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~---lD~~fgpaWl  350 (611)
T KOG1173|consen  276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT---LDPTFGPAWL  350 (611)
T ss_pred             CCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh---cCccccHHHH
Confidence            45566677788899999998888888888875  466678999999888888999999999999855   444 346788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                      ...+.|+-.|+-++|...+....+-   ....+--+.--|.+.++...|.+.|.+.....+ -|+...+-+.-.....+.
T Consensus       351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~  429 (611)
T KOG1173|consen  351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEE  429 (611)
T ss_pred             HHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhh
Confidence            9999999999999999999877653   222233344568889999999999999876533 366677777766777899


Q ss_pred             hhHHHHHHHHhhhhcC-C---Cc-chhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhch
Q 036775          160 VDQGLILFKAMSTVYE-I---VP-QTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      +.+|..+|+....... +   ++ -..+++.|..+|.+.+++++|+..++..  -...++.++.++.-.|...|+++.|.
T Consensus       430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai  509 (611)
T KOG1173|consen  430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI  509 (611)
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence            9999999988773111 1   11 2346889999999999999999999988  33557788999999999999999999


Q ss_pred             HHHHHHHhhcCCchhhHHHH
Q 036775          233 PIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l  252 (293)
                      ..|.+.....|.+..+-..|
T Consensus       510 d~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  510 DHFHKALALKPDNIFISELL  529 (611)
T ss_pred             HHHHHHHhcCCccHHHHHHH
Confidence            99999999888775544333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=5.7e-09  Score=83.33  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775          122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA  201 (293)
Q Consensus       122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  201 (293)
                      +|++++|.+.|++.....-.-....|+.-+ .+-..|++++|+..|-.+..  -+.-+..+...+...|....+...|++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            567777777777766543222222333222 23445555555555544432  112233333444444444444444444


Q ss_pred             HHHhC-CC-CchHhHHHHHHHH----------------------------------HHhcCChhhchHHHHHHHhhcCCc
Q 036775          202 FIREM-PI-EAEWSVWGALLNA----------------------------------CRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       202 ~~~~~-~~-~~~~~~~~~l~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      ++-+. .+ ..|+.....|...                                  |....-.+++..+|++..- ..|+
T Consensus       580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~  658 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPN  658 (840)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCcc
Confidence            44443 11 1223333333333                                  4444445555555554432 3456


Q ss_pred             hhhHHHHHHH-HhcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775          246 VGTFALMSNT-FAGADRWEDANKIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       246 ~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  284 (293)
                      ..-|..++.. +.+.|++.+|.++++...+ .++.|..+.
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldcl  697 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCL  697 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHH
Confidence            6667766555 4467888888888887643 455554443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.17  E-value=1.1e-08  Score=91.42  Aligned_cols=205  Identities=8%  Similarity=0.038  Sum_probs=172.6

Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD  144 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  144 (293)
                      +.|-+...|-..|......+++++|.++.++....        -.-.|.++++.-..-|.-+...++|+++.+..-  .-
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AY 1530 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hH
Confidence            56667778889999999999999999999988753        234788888888888999999999999987521  24


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---hHhHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGALLN  220 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~l~~  220 (293)
                      ..|..|...|.+.++.++|.++++.|.++++  -...+|...+..+.+.++-+.|..++.+. ..-|   ........+.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            5688899999999999999999999998554  56678999999999999999999999887 3233   4445555566


Q ss_pred             HHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      .-.+.|+.+.+..+|+......|.-...|+..|..-.+.|+.+.++.+|++....++.|..
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            6688999999999999999999988999999999999999999999999999998887754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.13  E-value=3.2e-07  Score=75.09  Aligned_cols=255  Identities=9%  Similarity=-0.041  Sum_probs=127.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH---HHHHhcccCcchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN---VLSACSSISALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVK   90 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~   90 (293)
                      .+...|++++|.+.+++.....  +.|...+..   ........+....+.+.+...   ....|+ ......+...+..
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHH
Confidence            3455677777777777766642  223333331   111112234444444444331   122222 2333455566777


Q ss_pred             cCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcH--hHHHHHHHHHhcCCChhHHH
Q 036775           91 CGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDD--VTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~--~~~~~ll~~~~~~~~~~~a~  164 (293)
                      .|++++|.+.+++..+.   +...+..+..++...|++++|...+++....... |+.  ..|..+...+...|++++|.
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            77777777777777643   3455666777777777777777777776654221 222  23445666677777777777


Q ss_pred             HHHHHhhhhcCCCcchhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCc-hHhHHH--HHHHHHHhcCChhhchHH
Q 036775          165 ILFKAMSTVYEIVPQTQHY-A--CVVDMYGRAGLLEEAEAF--I-REM-PIEA-EWSVWG--ALLNACRIHRNDEMFDPI  234 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~-~~~~-~~~~~~--~l~~~~~~~~~~~~a~~~  234 (293)
                      .++++........+..... +  .++.-+...|....+.++  + ... ...+ ....+.  ....++...|+.+.|...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~  286 (355)
T cd05804         207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL  286 (355)
T ss_pred             HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence            7777765311111111111 1  222233334433333222  1 111 1001 111122  234445677777777777


Q ss_pred             HHHHHhhcCC---------chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          235 RQELVNKKGV---------SVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       235 ~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++.+......         ..........++...|++++|.+.+.+...
T Consensus       287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7666553311         112222233334567777777777776544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.3e-07  Score=74.72  Aligned_cols=186  Identities=8%  Similarity=-0.031  Sum_probs=110.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      +......++++.|+.+-++..+.   ++..|-.-...+...|++++|.-.|+......+ -+...|..++.+|...|+..
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence            33334444555555555555433   333444444556666777777777766554321 25566777777777777777


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHH-HHHHh-cCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHH
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVV-DMYGR-AGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQE  237 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~  237 (293)
                      +|.-.-+...+  -++.+..+.+.+. ..+.. ...-++|..+++.- .++|+.. ..+.+...+...|..+.+..++++
T Consensus       386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            76666665554  2334444544442 22222 22235666666665 5666654 445555557888888888888887


Q ss_pred             HHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .....+ |....+.|...+...+.+.+|.+.|....+
T Consensus       464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            776555 556777788888888888888777765443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=8.8e-07  Score=72.54  Aligned_cols=267  Identities=12%  Similarity=-0.026  Sum_probs=170.0

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHH-HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATL-VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      ....|..+...+...|+.+.+...+....+.....++.... ......+...|++++|.+++++..+  ..|.+...+..
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~   82 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--DYPRDLLALKL   82 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence            34456667777778888888887777766543223333222 2223346778999999999999887  34555545442


Q ss_pred             HHHHHH----HcCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775           84 VINMYV----KCGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH  156 (293)
Q Consensus        84 l~~~~~----~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  156 (293)
                       ...+.    ..+..+.+.+.++.....+.   .....+...+...|++++|...+++..+.... +...+..+...+..
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~  160 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM  160 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence             22222    24555666666655322222   23334556788999999999999999987533 56778888889999


Q ss_pred             CCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHH----H--HHHHHHHhcCC
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVW----G--ALLNACRIHRN  227 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~----~--~l~~~~~~~~~  227 (293)
                      .|++++|...++.........|+.  ..|..+...+...|++++|..++++. ...|.....    +  .++.-+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            999999999999988622212333  23556888999999999999999997 223311111    1  22333445555


Q ss_pred             hhhchHH---HHHHHhhcCCc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          228 DEMFDPI---RQELVNKKGVS--VGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       228 ~~~a~~~---~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ...+.+.   ........+..  .........++...|+.++|..+++.+...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            4444443   11111111111  122235677788999999999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=1.1e-07  Score=72.24  Aligned_cols=255  Identities=12%  Similarity=0.025  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH-HHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN-AVINM   87 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~   87 (293)
                      +++.+..+.+..+++.|++++..-.+.  .+.+....+.+..+|-...++..|...++++..   .-|...-|. --...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS   87 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence            567777788888999999998887664  233677778888888888999999999998865   334433332 23455


Q ss_pred             HHHcCCHHHHHHHHHHhhh-----------------------------------CCcccHHHHHHHHHhcCCHHHHHHHH
Q 036775           88 YVKCGDVGIAIQVFNMLAY-----------------------------------KDMISWSTVISGLAMNGCGRQALQLF  132 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~-----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~  132 (293)
                      +.+.+.+..|+++...|..                                   .+..+.+.......+.|++++|.+-|
T Consensus        88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence            5666677777776665542                                   12233333444456789999999999


Q ss_pred             HHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-------------chh--------HHHHHH----
Q 036775          133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-------------QTQ--------HYACVV----  187 (293)
Q Consensus       133 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~l~----  187 (293)
                      ....+-+---....|+..+ +..+.|+.+.|.++..++++ .|++.             |..        +-+.++    
T Consensus       168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN  245 (459)
T ss_pred             HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence            9988764433566777666 45577899999999998886 45431             111        122333    


Q ss_pred             ---HHHHhcCChHHHHHHHHhCC----CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775          188 ---DMYGRAGLLEEAEAFIREMP----IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       188 ---~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  260 (293)
                         ..+.+.|+++.|.+-+-.|+    ...|++|...+.-.- ..+++.....-++-+....|-.+.||..++-.||+..
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe  324 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE  324 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence               34567899999999999992    345666655443221 2344555555666666777778899999999999999


Q ss_pred             CHHHHHHHHHH
Q 036775          261 RWEDANKIRDE  271 (293)
Q Consensus       261 ~~~~a~~~~~~  271 (293)
                      -++-|-.++.+
T Consensus       325 yf~lAADvLAE  335 (459)
T KOG4340|consen  325 YFDLAADVLAE  335 (459)
T ss_pred             HHhHHHHHHhh
Confidence            99999888754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.3e-07  Score=73.44  Aligned_cols=250  Identities=11%  Similarity=-0.006  Sum_probs=174.3

Q ss_pred             cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh-HHHHHHHHHHHcCCHHHH
Q 036775           19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA   97 (293)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A   97 (293)
                      .++...|...+-.+.....++-|......+..++...|+.+.|...|++...   ..|+.. ......-.+.+.|+.+..
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhH
Confidence            4555555555544444433566677777777888888888888888887754   334332 223333445566777776


Q ss_pred             HHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775           98 IQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY  174 (293)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  174 (293)
                      ..+...+-..   +...|-.-...+...++++.|+.+-++..+.... +...+..--..+...++.++|.-.|+..+.. 
T Consensus       286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-  363 (564)
T KOG1174|consen  286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML-  363 (564)
T ss_pred             HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence            6666655443   3445666666667788899999988888765433 5556666667788999999999999998852 


Q ss_pred             CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHH-HH-HHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775          175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALL-NA-CRIHRNDEMFDPIRQELVNKKGVSVGTFA  250 (293)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  250 (293)
                       -+-+...|.-|+..|...|++.+|.-.-+.. +. ..+..+...+. .. +.....-++|..+++...+..|.-....+
T Consensus       364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~  442 (564)
T KOG1174|consen  364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN  442 (564)
T ss_pred             -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence             2346788999999999999999987765544 21 12333333221 12 33445568999999999999998889999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          251 LMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       251 ~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+...+...|+.++++++++.-..
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~  466 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLI  466 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHh
Confidence            999999999999999999987654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=1.2e-07  Score=79.13  Aligned_cols=127  Identities=15%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc----C-CCc-c
Q 036775          113 STVISGLAMNGCGRQALQLFSLMIIN---GVFP----DDVTFIALISACSHGGLVDQGLILFKAMSTVY----E-IVP-Q  179 (293)
Q Consensus       113 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~  179 (293)
                      +.+...+...+++++|..++....+.   -+.+    -..+++.+...|...|++++|.++++......    + ..+ .
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~  408 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV  408 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence            33444444555555555555443221   0111    12456666666666666666666666655421    1 111 1


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          180 TQHYACVVDMYGRAGLLEEAEAFIREM--------PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      ...++.|...|.+.++.++|.++|.+.        +..|+.. +|..|...|...|+++.|..+.+.+.
T Consensus       409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            234556666666666666666666554        2233333 56666777777777777777666555

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.3e-08  Score=83.28  Aligned_cols=219  Identities=11%  Similarity=-0.008  Sum_probs=168.1

Q ss_pred             hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHH
Q 036775           52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQA  128 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a  128 (293)
                      +.+.|++.+|.-.|+...+  .-|-+...|.-|.-.....++-..|+..+++..+-|   ....-.|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence            3466778888888888877  567778888888888888888888888888887654   44555666677888888888


Q ss_pred             HHHHHHHHhCCCC--------CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHH
Q 036775          129 LQLFSLMIINGVF--------PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE  200 (293)
Q Consensus       129 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  200 (293)
                      +..++......++        ++..+-..  ..+.....+....++|-++....+..+|..+...|.-.|.-.|.+++|.
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            8888887654321        01000000  1222333455666777666654565678888999999999999999999


Q ss_pred             HHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          201 AFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       201 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +.|+.. .++| |..+||.|...++...+.++|...|++..+..|.-+++...|.-.|...|.+++|.+.|-+...
T Consensus       451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            999998 6677 5568999999999999999999999999999998899999999999999999999998876443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.03  E-value=5.8e-07  Score=75.80  Aligned_cols=258  Identities=10%  Similarity=0.003  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhc-c-----cCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-S-----ISALSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      ........+.+.|+.++|..+|..+.+.+   |+...|...+..+. -     ..+.+...++++.+..  .. |.....
T Consensus        40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~--~y-p~s~~~  113 (517)
T PF12569_consen   40 VLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE--KY-PRSDAP  113 (517)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH--hC-ccccch
Confidence            34456678899999999999999999964   66666555554443 1     2256777888888876  33 333322


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHhhhCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCcHh
Q 036775           82 NAVINMYVKCGDV-GIAIQVFNMLAYKDM-ISWSTVISGLAMNGCGRQALQLFSLMIIN----G----------VFPDDV  145 (293)
Q Consensus        82 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~  145 (293)
                      ..+.-.+..-..+ ..+..++..+..+.+ .+|+.+-..|......+-..+++......    +          -.|+..
T Consensus       114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~  193 (517)
T PF12569_consen  114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL  193 (517)
T ss_pred             hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence            2332222222233 344455566666655 45666666666555555566666665432    1          123443


Q ss_pred             --HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHH
Q 036775          146 --TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLN  220 (293)
Q Consensus       146 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~  220 (293)
                        ++.-+...|...|++++|.++++..++ +  .|+ +..|..-.+.|-+.|++.+|.+.++.. ...+ |-..-+-...
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~-h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK  270 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE-H--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh-c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence              445556667899999999999999986 2  455 567888899999999999999999988 3333 3344444555


Q ss_pred             HHHhcCChhhchHHHHHHHhhc-CCch--------hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          221 ACRIHRNDEMFDPIRQELVNKK-GVSV--------GTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+.+.|+.+.|..++....+.+ .+..        +-..-...+|.+.|++..|++-|..+.+
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5789999999999998887765 2211        1224567889999999999998887654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=1.2e-06  Score=70.75  Aligned_cols=255  Identities=11%  Similarity=0.040  Sum_probs=197.3

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHH
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA   97 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   97 (293)
                      ..+++..|.++|+......  .-+...|.-.+..-.+...+..|..+++....  -+|.-...|--.+.+--..|++..|
T Consensus        85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~ga  160 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGA  160 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHH
Confidence            3567788999999887642  45566777777777889999999999999987  5666667777777778888999999


Q ss_pred             HHHHHHhh--hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           98 IQVFNMLA--YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        98 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      .++|++-.  +|+..+|++.|+--.+-+.++.|..+|++..-.  -|++.+|.....--.+.|+...|.++|+...+..|
T Consensus       161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            99999876  589999999999999999999999999998864  58999999999988999999999999999887433


Q ss_pred             CC-cchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHHHHHHHHhcCChhhchHH--------HHHHHhhc
Q 036775          176 IV-PQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDPI--------RQELVNKK  242 (293)
Q Consensus       176 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~  242 (293)
                      -. .+...+.+....=.++..++.|.-+|+-.    +.......|..+..--.+.|+.......        ++.....+
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence            21 12234445555555677888898888766    2222344566666555666665544333        34555677


Q ss_pred             CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775          243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK  279 (293)
Q Consensus       243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  279 (293)
                      |-|-.+|--.+..-...|+.+...++|++... +++|
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp  354 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPP  354 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCc
Confidence            88888998889998999999999999998765 4555

>PF12854 PPR_1: PPR repeat

Probab=98.99  E-value=8.5e-10  Score=56.13  Aligned_cols=32  Identities=31%  Similarity=0.506  Sum_probs=15.9

Q ss_pred             CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44455555555555555555555555555444

>PF12854 PPR_1: PPR repeat

Probab=98.96  E-value=1.4e-09  Score=55.32  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      |++||..+|++||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            678888888888888888888888888888774

>PLN02789 farnesyltranstransferase

Probab=98.94  E-value=1.4e-06  Score=69.41  Aligned_cols=223  Identities=10%  Similarity=-0.007  Sum_probs=102.9

Q ss_pred             CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCH--HHHH
Q 036775           56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG--RQAL  129 (293)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~~a~  129 (293)
                      +..++|..+...+.+  -.|-+..+|+.-..++...| ++++++..++++.+.   +..+|+.....+.+.|+.  ++++
T Consensus        51 e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence            344444444444443  22222333333333333444 345555555554432   223344333333333332  4445


Q ss_pred             HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CCh----HHHHHH
Q 036775          130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLL----EEAEAF  202 (293)
Q Consensus       130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~  202 (293)
                      ++++++.+...+ |..+|.....++...|+++++++.++++++ .. +-|...|+....++.+.   |.+    ++....
T Consensus       129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            555555544333 445555555555555555555555555554 11 22334444444333332   111    233333


Q ss_pred             HHhC-CCCc-hHhHHHHHHHHHHhc----CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC----------------
Q 036775          203 IREM-PIEA-EWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD----------------  260 (293)
Q Consensus       203 ~~~~-~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------  260 (293)
                      ..+. ...| |...|+.+...+...    +....+..++.......+.++.....|+..|+...                
T Consensus       206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~  285 (320)
T PLN02789        206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE  285 (320)
T ss_pred             HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence            3222 3233 333455555554442    22344555555555555556666666666666532                


Q ss_pred             --CHHHHHHHHHHHHHcCCCCCCccce
Q 036775          261 --RWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       261 --~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                        ..++|.++++.+.  ...|=..-||
T Consensus       286 ~~~~~~a~~~~~~l~--~~d~ir~~yw  310 (320)
T PLN02789        286 LSDSTLAQAVCSELE--VADPMRRNYW  310 (320)
T ss_pred             cccHHHHHHHHHHHH--hhCcHHHHHH
Confidence              3467888888873  3444444454

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=4.3e-07  Score=69.79  Aligned_cols=184  Identities=12%  Similarity=-0.008  Sum_probs=100.7

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGN   82 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~   82 (293)
                      ....+-.+...+...|++++|...|+++....+..|. ...+..+..++.+.|++++|...++.+.+...-.+.. ..+.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            4445555666666677777777777766553211111 1344555566666677777777777766511111111 1233


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHhhhCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           83 AVINMYVKC--------GDVGIAIQVFNMLAYKDMI---SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        83 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      .+..++.+.        |+.++|.+.|+++.+.++.   .+..+.....    ...      ..        ......+.
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~a  173 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELYVA  173 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHHHH
Confidence            344444433        4566666666666543221   1111110000    000      00        00112445


Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+.+.|++++|...++...+...-.| ....+..+..++...|++++|..+++.+
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            567888999999998888876322122 3467888888999999999998888876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=1.8e-07  Score=71.89  Aligned_cols=183  Identities=9%  Similarity=-0.093  Sum_probs=125.7

Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hH
Q 036775           75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VT  146 (293)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~  146 (293)
                      +.....+..+...+.+.|++++|...|+++.+.++      .++..+..++...|++++|...++++.+.......  .+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            34455667888888999999999999998875322      35677888889999999999999999875432121  13


Q ss_pred             HHHHHHHHhcC--------CChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHH
Q 036775          147 FIALISACSHG--------GLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA  217 (293)
Q Consensus       147 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  217 (293)
                      +..+..++...        |+.++|.+.++.+...   .|+. ..+..+.....    .....           ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence            44444455443        6788888888888762   2332 22222221111    00000           001123


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCC---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGV---SVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      +...+...|+++.|...++...+..|.   .+..+..+..++...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455688999999999999999887643   4578899999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.91  E-value=5.9e-06  Score=65.86  Aligned_cols=209  Identities=10%  Similarity=0.018  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +++.+-..+...++.++|+.+..++..   ..|+.. .|+.--.++...+ .++++...++.+.+  ..+.+..+|+...
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~  113 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRR  113 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHH
Confidence            455566667778899999999999988   445544 5655555556666 57899999999987  5566767777666


Q ss_pred             HHHHHcCCH--HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC---
Q 036775           86 NMYVKCGDV--GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG---  157 (293)
Q Consensus        86 ~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---  157 (293)
                      ..+.+.|+.  ++++.+++++.+.   +..+|+...-++...|+++++++.++++.+.++. |...|+.....+.+.   
T Consensus       114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence            566666653  6788899888865   5678888888888999999999999999998766 666777666665544   


Q ss_pred             CCh----hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc----CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775          158 GLV----DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA----GLLEEAEAFIREM-PIEA-EWSVWGALLNACRI  224 (293)
Q Consensus       158 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~  224 (293)
                      |..    ++...+...++.  ..+-|...|+.+...+...    ++..+|...+.+. ...| +......|+..|..
T Consensus       193 ~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            222    466777767765  3355677888888888773    3456687777776 3344 45567777877765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.90  E-value=1.1e-06  Score=79.18  Aligned_cols=223  Identities=9%  Similarity=0.048  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-C-cccHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV---SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-D-MISWSTV  115 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l  115 (293)
                      ++..|-..+.-..+.++.++|+++.+++...-.+..   -..+|.++++.-..-|.-+...++|+++.+- | -..|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            344566666666666666666666666665222111   1234555666555556666666666666653 2 2346666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--chhHHHHHHHHHHhc
Q 036775          116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--QTQHYACVVDMYGRA  193 (293)
Q Consensus       116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  193 (293)
                      ...|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.+..+  ..+-  ........+..-.+.
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence            66666666667777777666543 112455666666666666666666666666654  1211  223344445555566


Q ss_pred             CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-CC--chhhHHHHHHHHhcCCCHHHHH
Q 036775          194 GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-GV--SVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       194 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      |+.+.+..+|+.. ...| -...|+..+..-.++|+.+.+..+|+++.... ++  --..|...+..--..|+-+.+.
T Consensus      1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            6666666666665 1122 33456666666666677777777776666654 21  1234555555555555544333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.88  E-value=1.4e-06  Score=77.35  Aligned_cols=229  Identities=8%  Similarity=0.044  Sum_probs=122.8

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      ..+...|..|+..+...+++++|.++.+....   ..|+.. .|..+...+.+.++.+.+..+  .+..  -.+.+.   
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~---   97 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNL---   97 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hccccc---
Confidence            35677888999999999999999999997776   445543 333333345566665555544  2222  111111   


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                                 ++.....+...+..-  +..++-.+..+|-+.|+.++|..+|+++.+..+. |....|.+...+... +
T Consensus        98 -----------~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         98 -----------KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D  164 (906)
T ss_pred             -----------chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence                       111111111111110  1223445555566666666666666666555422 455555555555555 6


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHH---HHH--hcCChHHHHHHHHhC----CCCchHhHHHHHHHHHHhcCChhh
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVD---MYG--RAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  230 (293)
                      +++|.+++.+.... -  .+..-|+.+..   -++  ...+++.-..+.+.+    +...-+.++--+...|...++++.
T Consensus       165 L~KA~~m~~KAV~~-~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        165 KEKAITYLKKAIYR-F--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             HHHHHHHHHHHHHH-H--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence            66666655555431 0  00001111111   000  111222222222222    222334455556667888888999


Q ss_pred             chHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          231 FDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      +..+++.+.+..+.|.....-++.+|.
T Consensus       242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        242 VIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            999999999988888888888888877

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=4.6e-07  Score=74.59  Aligned_cols=248  Identities=10%  Similarity=-0.044  Sum_probs=182.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV   94 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   94 (293)
                      .+.+.|++.+|.-.|+...+.  -+-+...|..|..+.+..++-..|...+++..+  --|-+..+.-.|.-.|...|.-
T Consensus       294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence            467889999999999999886  366678999999999999999999999999877  3444667778888899999999


Q ss_pred             HHHHHHHHHhhhCC-cccHHHHH---------HHHHhcCCHHHHHHHHHHHHh-CCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775           95 GIAIQVFNMLAYKD-MISWSTVI---------SGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQG  163 (293)
Q Consensus        95 ~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a  163 (293)
                      ..|.+.++.-.... ...|...-         ..+.....+....++|-++.. .+..+|......|--.|--.|++++|
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            99999998775321 11111000         112222334556667766654 44446777777888888899999999


Q ss_pred             HHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775          164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  241 (293)
                      ...|+....  .-+-|...||.|.-.++...+.++|+.-|.+. .+.|..+ ....|.-+|...|.+++|...|-.....
T Consensus       450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            999999986  33446789999999999999999999999998 7788765 5666777899999999998887555432


Q ss_pred             cC----------CchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          242 KG----------VSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       242 ~~----------~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      .+          ++-..|.+|=.++.-.++.+.+.+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            21          1224566665666666666644443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2e-06  Score=64.37  Aligned_cols=244  Identities=9%  Similarity=-0.018  Sum_probs=152.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG   92 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (293)
                      ++-+.-.|++..++..-......   +-+...-..+-++|...|.+...   ...++.  +-.|.......+......-+
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~   86 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELES   86 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcc
Confidence            34455568888877665554332   23444444555666666655433   222222  22333333333333333333


Q ss_pred             CHHH-HHHHHHHhhhCCcc---cHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775           93 DVGI-AIQVFNMLAYKDMI---SWS-TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF  167 (293)
Q Consensus        93 ~~~~-A~~~~~~~~~~~~~---~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  167 (293)
                      +.++ -.++.+.+..++..   ++. .-...|+..|++++|++......      +......=+..+.+..+.+.|.+.+
T Consensus        87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l  160 (299)
T KOG3081|consen   87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL  160 (299)
T ss_pred             hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 33444555444222   222 22345788899999998887721      3333333344556778889999999


Q ss_pred             HHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775          168 KAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  241 (293)
                      +.|.+ .   .+..|.+.|..++.+    .++..+|.-+|++|  +..|+..+.+....++...|++++|..+++.....
T Consensus       161 k~mq~-i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  161 KKMQQ-I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHHHc-c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            99986 1   344566666666554    46688899999999  46788888888888899999999999999999998


Q ss_pred             cCCchhhHHHHHHHHhcCCCHHHH-HHHHHHHHH
Q 036775          242 KGVSVGTFALMSNTFAGADRWEDA-NKIRDEIRR  274 (293)
Q Consensus       242 ~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~  274 (293)
                      .+.++.+...++.+-...|...++ .+.+.+++.
T Consensus       237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            888888888888887777776544 445555543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.84  E-value=3e-07  Score=77.65  Aligned_cols=209  Identities=11%  Similarity=-0.032  Sum_probs=149.2

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCC
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGC  124 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~  124 (293)
                      .+...+.+.|-...|..++++...          |..++.+|+..|+..+|..+..+-.+  ||...|..+.+......-
T Consensus       403 ~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence            344445556666666666666532          45667777777777777777766554  355566666666655555


Q ss_pred             HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 036775          125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR  204 (293)
Q Consensus       125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  204 (293)
                      +++|.++.+..-..       .-..+.....+.++++++.+.|+.-.+..  +.-..+|..+..+..+.++++.|.+.|.
T Consensus       473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            67777776654221       11112222234678888888888766522  3345678888888889999999999998


Q ss_pred             hC-CCCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          205 EM-PIEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       205 ~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .. ...||. ..||.+-.+|.+.++-.+|...+++..+-...+...|.+-+....+.|.+++|.+.+.++.+
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            87 556654 58999999999999999999999999888777778888888899999999999999998866

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.83  E-value=6.7e-06  Score=63.91  Aligned_cols=189  Identities=12%  Similarity=0.081  Sum_probs=113.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHH---HHhcccCcchHHHHHHHHHHhhcCCCCchhHH-HHHHHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL---SACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINM   87 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~   87 (293)
                      +-..+...|++..|+.-|.....     .|+..|.++.   ..|...|+-..|..=+....+   ..||-..- ..-...
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchh
Confidence            44456667778888877777654     3333344333   346677777777777776654   45554322 223445


Q ss_pred             HHHcCCHHHHHHHHHHhhhCCc----------------ccHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH
Q 036775           88 YVKCGDVGIAIQVFNMLAYKDM----------------ISWS--TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA  149 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~~~----------------~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  149 (293)
                      +.+.|.+++|..=|+.+.+.++                ..|+  ..+..+...|+...|++....+.+..+ .|...|..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~  194 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQA  194 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHH
Confidence            6778888888888887775422                1111  223344556788888888887776533 36677777


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE  211 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~  211 (293)
                      -..+|...|++..|+.-++...+  --..+..++..+...+...|+.+.++...++. +..||
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD  255 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence            77777777777777766666553  11234445555556666666666666555554 44443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.83  E-value=1.6e-05  Score=66.72  Aligned_cols=261  Identities=13%  Similarity=0.143  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|-..++.....|++......|+.....=++......|...+.-....+-.+.+.+++++..+   +.|..  -+.-+.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~eeyie  177 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REEYIE  177 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHHHHH
Confidence            3556666777778888888888888766533444556777777777777888888888888765   33433  467778


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC--------------------------------C----------------cccHHHHHHH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK--------------------------------D----------------MISWSTVISG  118 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~--------------------------------~----------------~~~~~~li~~  118 (293)
                      .+++.+++++|.+.+......                                +                ...|++|..-
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            888888888888877766411                                0                1358888999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-------------------------------------------
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-------------------------------------------  155 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------------------------------------------  155 (293)
                      |.+.|.+++|.++|++..+.-.  +..-|+.+..+|.                                           
T Consensus       258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            9999999999998888655421  2222222222221                                           


Q ss_pred             -----------------------cCCChhHHHHHHHHhhhhcCCCcc------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          156 -----------------------HGGLVDQGLILFKAMSTVYEIVPQ------TQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       156 -----------------------~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                                             ..|+..+....+.+..+  .+.|.      ...|..+.+.|...|+++.|..+|++.
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka  413 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA  413 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence                                   11234444445555543  33332      234677777888888888888888877


Q ss_pred             CCCc--h----HhHHHHHHHHHHhcCChhhchHHHHHHHhhc------------CC------chhhHHHHHHHHhcCCCH
Q 036775          207 PIEA--E----WSVWGALLNACRIHRNDEMFDPIRQELVNKK------------GV------SVGTFALMSNTFAGADRW  262 (293)
Q Consensus       207 ~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~------~~~~~~~li~~~~~~g~~  262 (293)
                      -..|  .    ..+|..-...-.++.+++.|..+.+....-.            |+      +...|...+...-..|-+
T Consensus       414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            2121  1    2234444444466777777777776554321            11      233455566666666777


Q ss_pred             HHHHHHHHHHHHcC
Q 036775          263 EDANKIRDEIRRMG  276 (293)
Q Consensus       263 ~~a~~~~~~m~~~~  276 (293)
                      +....+++++.+..
T Consensus       494 estk~vYdriidLr  507 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLR  507 (835)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777787777643

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=1e-06  Score=65.67  Aligned_cols=151  Identities=15%  Similarity=0.024  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhh-C--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAY-K--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG  158 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  158 (293)
                      ..+-..+...|+-+....+..+... .  |....+..+....+.|++..|...+++...-. ++|..+|+.+--+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            4444555555555555555554332 1  33334445566666666666666666655432 345666666666666666


Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CchHhHHHHHHHHHHhcCChhhchHHH
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI--EAEWSVWGALLNACRIHRNDEMFDPIR  235 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~  235 (293)
                      +.++|..-|.+..+..  .-+...++.+...|.-.|+++.|..++.....  ..|...-..+.......|+++.|+.+.
T Consensus       149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            6666666666665422  22334456666666666666666666665511  123444455555556666666666554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=7.8e-06  Score=69.77  Aligned_cols=128  Identities=10%  Similarity=0.034  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~  223 (293)
                      .|......+.+.+..++|...+.+...  ..+.....|......+...|++++|.+.|... -+.|+. ....++...+.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            355666677888999999988888875  44556677888888899999999999999887 566754 47888888899


Q ss_pred             hcCChhhchH--HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          224 IHRNDEMFDP--IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       224 ~~~~~~~a~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      +.|+...+..  ++..+.+.+|.++..|..+...+.+.|+.++|.+.|......
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            9999998888  999999999999999999999999999999999999976553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.80  E-value=3.9e-06  Score=62.69  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      |... ..+-..+...|+-+....+......  ..+.+......++....+.|++..|...|++...+   |..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence            3344 5566667788888888888877654  55666667777999999999999999999998764   7889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      +|.+.|+.++|..-|.+..+.-.. +....+.+.-.+.-.|+.+.|..++.....  .-.-|..+-..+..+....|+++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChH
Confidence            999999999999999999876433 556778888888899999999999999886  33446777888999999999999


Q ss_pred             HHHHHHHhC
Q 036775          198 EAEAFIREM  206 (293)
Q Consensus       198 ~a~~~~~~~  206 (293)
                      +|.++...-
T Consensus       220 ~A~~i~~~e  228 (257)
T COG5010         220 EAEDIAVQE  228 (257)
T ss_pred             HHHhhcccc
Confidence            999988766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.79  E-value=5.4e-06  Score=72.69  Aligned_cols=132  Identities=10%  Similarity=0.013  Sum_probs=62.2

Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      +..+-.|.....+.|..++|..+++...+..+. +......+...+.+.+++++|....++...  .-+-+......+..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~  162 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence            344444555555555555555555555443211 233444444455555555555555555543  21223334444445


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775          189 MYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKG  243 (293)
Q Consensus       189 ~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  243 (293)
                      ++.+.|++++|..+|++. ...|+ ...+..+..++...|+.++|...|++..+...
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            555555555555555555 11222 33444445555555555555555555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.78  E-value=1.5e-06  Score=64.53  Aligned_cols=154  Identities=13%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                      +..|...|+++.+....+.+..+. .       .+...++.+++...+++..+.... |...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            445666666666544433222221 0       111245555555555555544332 5556666666666666666666


Q ss_pred             HHHHHhhhhcCCCcchhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          165 ILFKAMSTVYEIVPQTQHYACVVDMY-GRAGL--LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      ..|+...+.  .+.+...+..+..++ ...|+  .++|.+++++. ...| +...+..+...+...|++++|...++++.
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666541  123444555555543 44454  36666666665 3333 33345555555666666666666666666


Q ss_pred             hhcCCchhhH
Q 036775          240 NKKGVSVGTF  249 (293)
Q Consensus       240 ~~~~~~~~~~  249 (293)
                      +..|++..-+
T Consensus       172 ~l~~~~~~r~  181 (198)
T PRK10370        172 DLNSPRVNRT  181 (198)
T ss_pred             hhCCCCccHH
Confidence            6655554333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.75  E-value=3.2e-06  Score=62.74  Aligned_cols=115  Identities=9%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHH-HHhcCC--hhhch
Q 036775          158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA-CRIHRN--DEMFD  232 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~--~~~a~  232 (293)
                      ++.+++...++...+  .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+  .+.|.
T Consensus        53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            333444444444333  11333444444444444455555554444444 2222 22233333333 233333  24444


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .++++..+..|.++.++..+...+.+.|++++|...|+++.+
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444444444444444444444444445555555555544443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.73  E-value=1.2e-06  Score=71.13  Aligned_cols=127  Identities=11%  Similarity=0.035  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      ...|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++....... +......-...+.+.++.
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence            3566777777899999999999999999888888999999999999999999999876333 666666667778899999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA  210 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  210 (293)
                      +.|..+.+++.+  -.+.+-.+|..|..+|...|+++.|+..++.++..+
T Consensus       251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            999999999986  223345699999999999999999999999985443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.73  E-value=6e-07  Score=63.07  Aligned_cols=26  Identities=12%  Similarity=0.014  Sum_probs=10.2

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      .+..+..++.+.|++++|...|+...
T Consensus        60 a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         60 AHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333334444444444444333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.73  E-value=4.3e-07  Score=63.81  Aligned_cols=89  Identities=7%  Similarity=-0.130  Sum_probs=42.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHH
Q 036775          186 VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWE  263 (293)
Q Consensus       186 l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  263 (293)
                      +...+...|++++|...|+.. ...| +...|..+..++...|+++.|...|++..+..|.++..+..+..++...|+++
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence            344444455555555554444 2222 33344444444555555555555555555544555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 036775          264 DANKIRDEIRR  274 (293)
Q Consensus       264 ~a~~~~~~m~~  274 (293)
                      +|...|+...+
T Consensus       110 eAi~~~~~Al~  120 (144)
T PRK15359        110 LAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHH
Confidence            55555554433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=3.8e-06  Score=73.62  Aligned_cols=144  Identities=10%  Similarity=-0.060  Sum_probs=114.4

Q ss_pred             CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHH
Q 036775           38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWST  114 (293)
Q Consensus        38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~  114 (293)
                      .+.++..+..|..+..+.|.+++|..+++...+  -.|.+......+...+.+.+++++|+..+++....+   ......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            556678888888889999999999999999977  445566677888889999999999999999988653   345667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV  186 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  186 (293)
                      +..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+....  ...+....|+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence            77888999999999999999987433 2578888888899999999999999999886  233444554443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.72  E-value=5.4e-05  Score=63.66  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCH
Q 036775          185 CVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW  262 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  262 (293)
                      .++..|-+.|+++.|..+++.. +..|+.. .|..-.+.+...|+.+.|..++++..+.+.+|...=.--..-..++++.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence            3455555566666666666655 4455443 3333344456666666666666666665555544333444455556666


Q ss_pred             HHHHHHHHHHHHcC
Q 036775          263 EDANKIRDEIRRMG  276 (293)
Q Consensus       263 ~~a~~~~~~m~~~~  276 (293)
                      ++|.++...+-+.|
T Consensus       456 ~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  456 EEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHHHHhhhcc
Confidence            66666665555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.66  E-value=5.2e-05  Score=70.11  Aligned_cols=262  Identities=11%  Similarity=-0.028  Sum_probs=172.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCC-CchhHHHHHH
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRY---DLS-VSNLVGNAVI   85 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~   85 (293)
                      ..+...|++++|...+++..... ...+    ....+.+...+...|+++.|...+++.....   +.. ........+.
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            45567899999999999876631 1111    1234455556778999999999988877521   111 1123445667


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC-------C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--cHhHHHHH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK-------D----MISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFP--DDVTFIAL  150 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~-------~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~l  150 (293)
                      ..+...|++++|...+++....       +    ...+..+...+...|++++|...+.+....  ...+  ....+..+
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  618 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML  618 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence            7888999999999998876541       1    112344556677789999999999887543  1112  23344555


Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--chH----hHHHHHH
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-----ACVVDMYGRAGLLEEAEAFIREMPIE--AEW----SVWGALL  219 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~l~  219 (293)
                      ...+...|+.+.|...++..............+     ...+..+...|+.+.|..++......  ...    ..+..+.
T Consensus       619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a  698 (903)
T PRK04841        619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA  698 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence            667788999999999998886421111111111     11224455689999999998776211  111    1134455


Q ss_pred             HHHHhcCChhhchHHHHHHHhhc-----C-CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          220 NACRIHRNDEMFDPIRQELVNKK-----G-VSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      .++...|+.++|...++......     + ....+...+..++.+.|+.++|...+.+..+..
T Consensus       699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            66888999999999998877642     1 123467778888999999999999999887643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=5.9e-06  Score=70.13  Aligned_cols=189  Identities=14%  Similarity=0.100  Sum_probs=156.4

Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      +.+|-...-..+...+...|-...|..+|++.     ..|.-+|.+|+..|+..+|..+..+-.+  -+||...|..+..
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            34555566678889999999999999999976     4678889999999999999999988877  3678889999988


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~  230 (293)
                      ......-+++|.++.+.....        .-..+.....+.++++++.+.|+.- .+.| -..+|..+-.+..+.++.+.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            888888889999988776541        1111222233478999999999876 4444 45588888888999999999


Q ss_pred             chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      +...|..-....|.+...||++-.+|.+.|+-.+|...+.+..+.+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999988866

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.66  E-value=5.6e-08  Score=50.14  Aligned_cols=34  Identities=38%  Similarity=0.688  Sum_probs=29.4

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD  143 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  143 (293)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3688888888888999999999998888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.62  E-value=5.3e-05  Score=63.72  Aligned_cols=248  Identities=8%  Similarity=-0.010  Sum_probs=161.4

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .-...|..++..| ..+++...++..+.+.+.  .+-...|.....-.+...|+-++|....+....  +-..+.+.|..
T Consensus         6 KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv   80 (700)
T KOG1156|consen    6 KENALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHV   80 (700)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHH
Confidence            3444566666644 567788888888888774  333344554444456677888888888877665  55566777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +.-.+-...++++|++.|.....-   +...|.-+.-.-++.|+++.....-.++.+.... ....|..+..+..-.|+.
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence            887787888999999999887643   4556665555566677777777777776664222 445677777777777888


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHH------HHHHhcCChHHHHHHHHhCC-CCchHh-HHHHHHHHHHhcCChhhch
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEAEAFIREMP-IEAEWS-VWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~  232 (293)
                      ..|..+++...+...-.|+...+.-..      ....+.|.+++|.+-+.... ...|-. .-..-...+.+.++.++|.
T Consensus       160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~  239 (700)
T KOG1156|consen  160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV  239 (700)
T ss_pred             HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence            888888777776333345544443222      23455677777777666552 111221 1122233367777888888


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      .++..+....|.+...|..+..++.
T Consensus       240 ~~y~~Ll~rnPdn~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  240 KVYRRLLERNPDNLDYYEGLEKALG  264 (700)
T ss_pred             HHHHHHHhhCchhHHHHHHHHHHHH
Confidence            8888887777777777777776665

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.61  E-value=8.8e-08  Score=49.37  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      .+|+.++.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.61  E-value=9.3e-08  Score=48.92  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFP  142 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  142 (293)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=3.5e-05  Score=57.90  Aligned_cols=175  Identities=14%  Similarity=0.084  Sum_probs=125.3

Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036775           63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP  142 (293)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  142 (293)
                      .+.+.+.. .....+......-...|+..|++++|++......  +....-.=+..+.+..+.+-|.+.+++|.+-   -
T Consensus        94 ~l~E~~a~-~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d  167 (299)
T KOG3081|consen   94 SLYELVAD-STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D  167 (299)
T ss_pred             HHHHHHHh-hccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence            34444443 3333343444455667889999999999998733  3344444456678889999999999999863   3


Q ss_pred             cHhHHHHHHHHHh----cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHH
Q 036775          143 DDVTFIALISACS----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWG  216 (293)
Q Consensus       143 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~  216 (293)
                      +..|.+.|..++.    ..+.+.+|.-+|++|.+  ..+|+..+.+-...++...|++++|..++++.  +...++.+..
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            6677777777765    34678999999999986  67899999999999999999999999999998  3334555555


Q ss_pred             HHHHH-HHhcCChhhchHHHHHHHhhcCCc
Q 036775          217 ALLNA-CRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       217 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      .++.. .....+.+...+.+.++....|..
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            55554 444445566667777777666543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.61  E-value=9.4e-08  Score=48.90  Aligned_cols=34  Identities=24%  Similarity=0.487  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP   40 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p   40 (293)
                      +.+||++|.+|++.|+++.|.++|++|.+.| ++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g-v~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG-VKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence            3689999999999999999999999999887 776

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.57  E-value=0.00027  Score=59.73  Aligned_cols=262  Identities=10%  Similarity=0.059  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch---HHHHHHHHHHhcccCcchHHHHHHHHHHhhc----------C
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN---EATLVNVLSACSSISALSFGQYVHSYISTRY----------D   73 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~   73 (293)
                      ..|..+...|-..|+++.|..+|++..+-. .+--   ..+|......-.+..+++.|.++++....-.          +
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~  466 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS  466 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence            357778888899999999999999987643 2221   3355555555566778888888887765410          1


Q ss_pred             CCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775           74 LSVS------NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS---GLAMNGCGRQALQLFSLMIINGVFPDD  144 (293)
Q Consensus        74 ~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~  144 (293)
                      .++.      ..+|...++.--..|-++....+|+++.+-.+.|=..+++   -+-.+.-++++.++|++-...=..|++
T Consensus       467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v  546 (835)
T KOG2047|consen  467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV  546 (835)
T ss_pred             CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence            1111      1233444555556677888888888887654444433333   233455677888888765443233444


Q ss_pred             -hHHHHHHHHHh---cCCChhHHHHHHHHhhhhcCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhC--CCCch--HhH
Q 036775          145 -VTFIALISACS---HGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREM--PIEAE--WSV  214 (293)
Q Consensus       145 -~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~--~~~  214 (293)
                       ..|++-+.-+.   ....++.|..+|++..+  +++|...  .|......=.+.|....|+.++++.  ++++.  ...
T Consensus       547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m  624 (835)
T KOG2047|consen  547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM  624 (835)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             23444444333   34578899999999986  7776543  2222222333468888899999888  33433  336


Q ss_pred             HHHHHHHHHhcCChhhchHHHHHHHhhcCCch--hhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSV--GTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      |+..|.-....=.......+|++..+.-|.+.  .........-++.|..+.|..++.-
T Consensus       625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~  683 (835)
T KOG2047|consen  625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH  683 (835)
T ss_pred             HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence            77777765555555666677776666543221  1223334445667777777777754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.55  E-value=0.00024  Score=58.77  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCc-hHhHHHHHHHHHHhcCChhhchHHH
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEA-EWSVWGALLNACRIHRNDEMFDPIR  235 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~  235 (293)
                      .+.....++++.....+.|+. +|..+++.-.+..-+..|..+|.+.   +..+ ++..+++++.-| ..++.+.|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHH
Confidence            444455555555433344433 5777777777888888888888888   2233 555566665544 467888888888


Q ss_pred             HHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      +...+..+.++.-....+.-+...++-..+..+|++....++.|+.
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k  470 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK  470 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence            8888888877777777777788888888888888888777666554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=4.1e-05  Score=63.67  Aligned_cols=219  Identities=13%  Similarity=0.026  Sum_probs=139.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG   92 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (293)
                      ++.+.+.|++++|.....++...  .+-+...+..-+-+..+.+.++.|..+.+.-   .+...+..-+..=..+..+.+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHcc
Confidence            45677889999999999999885  3445667777788889999999998555442   122222222223345566889


Q ss_pred             CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-cCCChhHHHHHHHHhh
Q 036775           93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-HGGLVDQGLILFKAMS  171 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~  171 (293)
                      ..++|+..++....-|..+...-.+.+.+.|++++|+++|..+.+.+.. +   +..-+.+-+ ..+-...+ ++.+.. 
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~-~~~q~v-  167 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQV-QLLQSV-  167 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhH-HHHHhc-
Confidence            9999999999655556667777788899999999999999999876543 2   222222111 11111111 112222 


Q ss_pred             hhcCCCcchhHHH---HHHHHHHhcCChHHHHHHHHhC----------CCCc--h----Hh-HHHHHHHHHHhcCChhhc
Q 036775          172 TVYEIVPQTQHYA---CVVDMYGRAGLLEEAEAFIREM----------PIEA--E----WS-VWGALLNACRIHRNDEMF  231 (293)
Q Consensus       172 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~----------~~~~--~----~~-~~~~l~~~~~~~~~~~~a  231 (293)
                         ...| ..+|.   ...-.+...|++.+|+++++..          +...  +    .. .-..+..++...|+.++|
T Consensus       168 ---~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  168 ---PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             ---cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence               2223 22333   3444677899999999999876          1111  1    11 122344446788999999


Q ss_pred             hHHHHHHHhhcCCch
Q 036775          232 DPIRQELVNKKGVSV  246 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (293)
                      ..++....+..++|.
T Consensus       244 ~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  244 SSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHhcCCCc
Confidence            999988888776554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.52  E-value=7.2e-06  Score=66.80  Aligned_cols=124  Identities=12%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC  222 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~  222 (293)
                      ....+++..+...++++.|..+++++.+ .  .|+  ....+++.+...++-.+|.+++++. ...| +..........+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~-~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRE-R--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHh-c--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455666777788899999999999986 2  254  4556888888888889999998888 3233 555555556668


Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ...++++.|..+.+++.+..|.+..+|..|..+|...|++++|.-.++.+-
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            899999999999999999999999999999999999999999999998764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.51  E-value=0.00027  Score=65.52  Aligned_cols=261  Identities=10%  Similarity=-0.008  Sum_probs=165.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccC-C----CchH--HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-c----hh
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKE-A----EPNE--ATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-S----NL   79 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~-~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~   79 (293)
                      ....+...|++++|..++......-. .    .+..  .....+...+...|+++.|...++.... . .+. +    ..
T Consensus       415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~  492 (903)
T PRK04841        415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA-E-LPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-c-CCCccHHHHHH
Confidence            34455677899999998887754310 0    1111  1222223345678999999999988766 2 221 1    12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-c
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVF--P-D  143 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~  143 (293)
                      ..+.+...+...|++++|...+++....     +    ..++..+...+...|++++|...+++....    |..  + .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3456667778899999999999887632     1    124455667788899999999998886542    221  1 2


Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC-CCc--chhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHH
Q 036775          144 DVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVP--QTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWG  216 (293)
Q Consensus       144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~  216 (293)
                      ...+..+...+...|++++|...+++...... ..+  ....+..+...+...|+.++|.+.+++.    ........+.
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            23344555566778999999999888754211 112  2334455667788899999999888776    1111111111


Q ss_pred             -----HHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          217 -----ALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       217 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                           ..+..+...|+.+.+...+............    .+..+..++...|++++|...+++...
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 1123345678888888887665543222221    145677888899999999999998765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=2.7e-05  Score=64.74  Aligned_cols=230  Identities=8%  Similarity=-0.039  Sum_probs=148.9

Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc--ccHHHHHHHHHhc
Q 036775           45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM--ISWSTVISGLAMN  122 (293)
Q Consensus        45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~  122 (293)
                      ..+=++-+...+++++|.+....+..  +.+.+...+..-+-+..+.+.+++|+.+.+.-.....  .-+---.-+..+.
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            34455667889999999999999987  5566666777777788999999999977665442211  1112334455678


Q ss_pred             CCHHHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHH
Q 036775          123 GCGRQALQLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       123 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a  199 (293)
                      +..++|+..++-     ..++ ..+...-...+.+.|++++|..+|+.+.+ .+ .++.  ..-..++.    .+---.+
T Consensus        93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~-~dd~d~~~r~nl~a----~~a~l~~  161 (652)
T KOG2376|consen   93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NN-SDDQDEERRANLLA----VAAALQV  161 (652)
T ss_pred             ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CchHHHHHHHHHHH----HHHhhhH
Confidence            999999999983     3333 33555555667899999999999999986 23 2322  22222221    1111222


Q ss_pred             HHHHHhCCCCchHhHHHHH---HHHHHhcCChhhchHHHHHHHhh--------cCC--ch-----hhHHHHHHHHhcCCC
Q 036775          200 EAFIREMPIEAEWSVWGAL---LNACRIHRNDEMFDPIRQELVNK--------KGV--SV-----GTFALMSNTFAGADR  261 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~--------~~~--~~-----~~~~~li~~~~~~g~  261 (293)
                      . +.+..+..|+ .+|..+   ...+...|++..|+++++...+.        ...  ++     ..-..|..++-..|+
T Consensus       162 ~-~~q~v~~v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  162 Q-LLQSVPEVPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             H-HHHhccCCCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            2 5566655553 234443   34468899999999999888321        111  11     123456777888999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCccceeeecC
Q 036775          262 WEDANKIRDEIRRMGLKKKTGCSWIEVNP  290 (293)
Q Consensus       262 ~~~a~~~~~~m~~~~~~p~~~~~~~~i~~  290 (293)
                      .++|.+++...++.+ .+|....-+..+|
T Consensus       240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NN  267 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRN-PADEPSLAVAVNN  267 (652)
T ss_pred             hHHHHHHHHHHHHhc-CCCchHHHHHhcc
Confidence            999999999988865 4555444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=9.9e-05  Score=57.91  Aligned_cols=126  Identities=14%  Similarity=0.089  Sum_probs=80.5

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-chHhHHHH-HHHHHHhcC
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP-IE-AEWSVWGA-LLNACRIHR  226 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~~-l~~~~~~~~  226 (293)
                      +..++.-..++++++.+++.... .-...|..-+ .+..+++..|++.+|+++|-++. .+ .|..+|-+ |.++|...+
T Consensus       365 mAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  365 MASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence            33333444566777777776664 3333334333 47788889999999999998882 11 34555655 455578888


Q ss_pred             ChhhchHHHHHHHhhc-CCchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          227 NDEMFDPIRQELVNKK-GVSVG-TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       227 ~~~~a~~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      .++.|..++   .+.. +.+.. ....+..-|-+.+.+--|-+.|+++..  ..|++.
T Consensus       443 kP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE  495 (557)
T KOG3785|consen  443 KPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE  495 (557)
T ss_pred             CchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence            888886654   3333 33332 344456668888899889999988876  445544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.48  E-value=0.00045  Score=59.52  Aligned_cols=168  Identities=10%  Similarity=-0.065  Sum_probs=104.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      |...|..|.-+..+.|+++.+.+.|++....  ..-....|..+-..+...|.-..|..+++.......-+++...+-..
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            6677888888888889999888888887653  34445566677777777777777777777665422223333333333


Q ss_pred             HHHHHH-cCCHHHHHHHHHHhh--------------------------------------------------hC---Ccc
Q 036775           85 INMYVK-CGDVGIAIQVFNMLA--------------------------------------------------YK---DMI  110 (293)
Q Consensus        85 ~~~~~~-~~~~~~A~~~~~~~~--------------------------------------------------~~---~~~  110 (293)
                      -..|.+ .+.+++++.+-.+..                                                  +.   |+.
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            333332 234444443333322                                                  11   221


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY  174 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  174 (293)
                      .-..+.--|+..++.+.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+..
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~  543 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF  543 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence            2122223356677888888888888877666677788888878888888888887777665533

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.48  E-value=3.8e-06  Score=58.47  Aligned_cols=91  Identities=12%  Similarity=0.050  Sum_probs=42.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          184 ACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       184 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      ..+...+...|++++|.+.|+.. ...| +...+..+...+...|+++.|...++...+..|.++.++..+..++...|+
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence            33444444445555555444444 1122 233344444444444555555555554444444444555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 036775          262 WEDANKIRDEIRR  274 (293)
Q Consensus       262 ~~~a~~~~~~m~~  274 (293)
                      +++|.+.|++..+
T Consensus       101 ~~~A~~~~~~al~  113 (135)
T TIGR02552       101 PESALKALDLAIE  113 (135)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00016  Score=64.23  Aligned_cols=212  Identities=10%  Similarity=0.124  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC-CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      |+.--..-+.++...+-..+-+++++++.-.+. +.-+...-+.++-...+. +...+.+..+++-.   ...+     .
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdn---yDa~-----~ 1053 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAP-----D 1053 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhcc---CCch-----h
Confidence            555556667788888888888888888754321 111122223333333332 23333333333322   1111     1


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhh-------------------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAY-------------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  138 (293)
                      +.......+-+++|..+|++...                         .....|..+..+-.+.|...+|.+-|-+.   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            12223334445555555544320                         14568999999999999999999988664   


Q ss_pred             CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHH
Q 036775          139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL  218 (293)
Q Consensus       139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l  218 (293)
                         -|+..|..++....+.|.+++-.+++...++ ..-.|..  =+.|+-+|++.+++.+.++++.    .||......+
T Consensus      1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQV 1200 (1666)
T ss_pred             ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHH
Confidence               2677899999999999999999999887776 4444544  4679999999999998877664    4666656666


Q ss_pred             HHHHHhcCChhhchHHHHHH
Q 036775          219 LNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~  238 (293)
                      ..-|...+.++.|.-++...
T Consensus      1201 Gdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred             hHHHhhhhhhHHHHHHHHHh
Confidence            66677777777777666543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.47  E-value=1.8e-05  Score=67.73  Aligned_cols=26  Identities=12%  Similarity=0.054  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      .|...+..-+-..|+...|..-|-+.
T Consensus       883 dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  883 DTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHhh
Confidence            45666677777788888888776544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=2.7e-05  Score=63.38  Aligned_cols=161  Identities=11%  Similarity=-0.010  Sum_probs=100.7

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      .|+...+...+.+......-..+-.++.+-.+.   .-...-|. ........|+++.|+..++.+.+  ..|.|+....
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~  344 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYG-RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLE  344 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHH-HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHH
Confidence            355555666665554444333333333322221   11122233 23334466778888888888766  4455555556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                      .....+.+.++.++|.+.++++...+   ...+-.+.+++.+.|++.+|..++++...... -|+..|..|..+|...|+
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCc
Confidence            66777888888888888888877543   33456667778888888888888887776543 377788888888888888


Q ss_pred             hhHHHHHHHHh
Q 036775          160 VDQGLILFKAM  170 (293)
Q Consensus       160 ~~~a~~~~~~~  170 (293)
                      ..++.....+.
T Consensus       424 ~~~a~~A~AE~  434 (484)
T COG4783         424 RAEALLARAEG  434 (484)
T ss_pred             hHHHHHHHHHH
Confidence            77777665554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=4.4e-05  Score=62.19  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +...|+.++|+..++.+..  ..+-|..-.......+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.++
T Consensus       316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            4466788888888888775  44555666666777888888888888888887 45565 44556666778888888888


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..+++......|.++..|..|.++|...|+..++.....+..
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            888888888888888888888888887777777766665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=0.00025  Score=53.12  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=94.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWST---VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG  158 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  158 (293)
                      ..++-+...+|+.+.|..+++++...=+.++..   -.--+-..|++++|+++|+.+.+.++ .|..++-.-+...-..|
T Consensus        56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~G  134 (289)
T KOG3060|consen   56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQG  134 (289)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcC
Confidence            334444455566666666666655431111111   11123446777777777777776653 35666666666666667


Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHH-Hh--cCChhhchH
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNAC-RI--HRNDEMFDP  233 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~-~~--~~~~~~a~~  233 (293)
                      +--+|++-+....+  .+..|...|.-+...|...|++++|.-.++++ -+.|... .+..+...+ ..  ..+.+.+..
T Consensus       135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            66677777777765  45667777777777777777777777777777 3344333 344444442 22  234556667


Q ss_pred             HHHHHHhhcCCc
Q 036775          234 IRQELVNKKGVS  245 (293)
Q Consensus       234 ~~~~~~~~~~~~  245 (293)
                      ++.+..+..+.+
T Consensus       213 yy~~alkl~~~~  224 (289)
T KOG3060|consen  213 YYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHhChHh
Confidence            777776666533

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.6e-05  Score=59.61  Aligned_cols=199  Identities=12%  Similarity=-0.020  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH-HHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA-LISA  153 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~  153 (293)
                      ..-+++.+..+.+..++..|++++..-.++   +....+.|..+|.+..++..|-..|+++-..  -|...-|.. -...
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            334566677777778888888888766554   4455677778888888888888888887654  344443332 2234


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +-+.+.+.+|.++...|..  .  ++..  +...-.......+++..+..+++..+.+.+..+.+.......+.|++++|
T Consensus        88 LY~A~i~ADALrV~~~~~D--~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLD--N--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HHHhcccHHHHHHHHHhcC--C--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence            5577888888888888764  1  2221  11111222345788888888888886556666665555556789999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      .+-|+...+-..-++..--++.-+.-+.|+++.|.++..++.++|++-.+.
T Consensus       164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            999988887665444443334555667789999999999999999986655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=2.8e-05  Score=54.81  Aligned_cols=125  Identities=7%  Similarity=0.014  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLVGNAV   84 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l   84 (293)
                      .|..++..+ ..++...+...++.+.+..+.. ......-.+...+...|++++|...|+.+.. ....++  ......|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence            445555544 2566666666666665542111 1112222233445566666666666666655 221111  1123344


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSL  134 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~  134 (293)
                      ...+...|++++|+..++....+  ....+......+.+.|++++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555566666666666543322  222344445555556666666555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.41  E-value=1.1e-05  Score=56.07  Aligned_cols=94  Identities=11%  Similarity=-0.018  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775           43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGL  119 (293)
Q Consensus        43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~  119 (293)
                      .....+...+...|++++|.+.++.+..  ..+.+...+..+...+.+.|++++|...+++..+.   +...+..+..++
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3444555566677777777777777765  33456666677777777777777777777776543   344566666777


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 036775          120 AMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~  138 (293)
                      ...|++++|...|+...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            7777777777777777664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.39  E-value=6.2e-05  Score=64.56  Aligned_cols=166  Identities=13%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             HHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHH
Q 036775           50 SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL  129 (293)
Q Consensus        50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  129 (293)
                      .+......|.+|..+++.+.. .  ..-..-|..+...|+..|+++.|+++|-+.     ..++-.|..|.+.|+|+.|.
T Consensus       740 eaai~akew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence            344566677777777776654 1  122233566677788888888888888644     24566777888888888887


Q ss_pred             HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036775          130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE  209 (293)
Q Consensus       130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  209 (293)
                      ++-.+.  .|.......|.+-..-+-+.|++.+|.++|-....     |+.     -|.+|-+.|..+..+++.++-.-.
T Consensus       812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d  879 (1636)
T KOG3616|consen  812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD  879 (1636)
T ss_pred             HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence            776554  34444555666666666677777777776654432     443     455677777777777776665211


Q ss_pred             chHhHHHHHHHHHHhcCChhhchHHH
Q 036775          210 AEWSVWGALLNACRIHRNDEMFDPIR  235 (293)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~a~~~~  235 (293)
                      .-..|...+..-+-..|+.+.|+..|
T Consensus       880 ~l~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  880 HLHDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             hhhHHHHHHHHHHHhccChhHHHHHH
Confidence            12223444444455566666655544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.38  E-value=7.9e-05  Score=66.59  Aligned_cols=217  Identities=9%  Similarity=0.038  Sum_probs=147.6

Q ss_pred             CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHH
Q 036775           39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG  118 (293)
Q Consensus        39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~  118 (293)
                      +.+...+..|+..+...+++++|.++.+...+  ..|.....|-.+...+.+.++.+.+..+             .++..
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~   92 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDS   92 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhh
Confidence            34466788899999999999999999997665  3334444455555567777776655444             34445


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  198 (293)
                      .....++.-+..+...|.+.+-  +...+..+..+|-+.|+.++|..+|+++.+ .. +-|..+.|.+...|+.. ++++
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHH
Confidence            5556667666666666766432  455888899999999999999999999997 33 56788999999999999 9999


Q ss_pred             HHHHHHhC-CCCchHhHHHHHHHH-----HHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775          199 AEAFIREM-PIEAEWSVWGALLNA-----CRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRD  270 (293)
Q Consensus       199 a~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~  270 (293)
                      |++++.+. ...-+..-|+.+...     .....+.+...++.+++....  ..-..++..+-..|...++|+++..+++
T Consensus       168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99998876 111111112222111     122233444444444444432  2334566777788888999999999999


Q ss_pred             HHHHc
Q 036775          271 EIRRM  275 (293)
Q Consensus       271 ~m~~~  275 (293)
                      .+.+.
T Consensus       248 ~iL~~  252 (906)
T PRK14720        248 KILEH  252 (906)
T ss_pred             HHHhc
Confidence            98774

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=3.3e-05  Score=54.45  Aligned_cols=112  Identities=9%  Similarity=0.030  Sum_probs=55.1

Q ss_pred             CCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH----hHHHHHHHHHHhcCCh
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW----SVWGALLNACRIHRND  228 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~  228 (293)
                      .++...+...++.+....  +.+   ......+...+...|++++|...|+.. ...|+.    .....+...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            455555555555555421  112   122223444555556666666555555 111221    1223334445556666


Q ss_pred             hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      +.|...++.. ...+..+..+.....++.+.|++++|...|+.
T Consensus       102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6666655442 22233444556666666677777777666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.00011  Score=54.95  Aligned_cols=181  Identities=12%  Similarity=0.030  Sum_probs=129.5

Q ss_pred             cCCHHHHHHHHHHhhhC--------Cc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH-HHHhcCCCh
Q 036775           91 CGDVGIAIQVFNMLAYK--------DM-ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI-SACSHGGLV  160 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~~--------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~  160 (293)
                      ..+.++..+++.++...        +. ..|..++-+....|+.+.|...++++.+.=  |.+.-...+= --+-..|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            35778888888887632        11 235556666777899999999999988763  4432222111 123457889


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      ++|.++++.+.++  -+-|..++-.-+-..-..|+--+|++-+.+.  ....|...|.-+...|...|+++.|...++++
T Consensus       103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999873  2455666666565666677777777766665  45567888999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHc
Q 036775          239 VNKKGVSVGTFALMSNTFAGA---DRWEDANKIRDEIRRM  275 (293)
Q Consensus       239 ~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  275 (293)
                      .-..|.++..+..+...+--.   .+.+-|.++|.+-.+.
T Consensus       181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            988898888888887775443   3567778888776653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.34  E-value=8.5e-07  Score=44.16  Aligned_cols=30  Identities=30%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIINGV  140 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  140 (293)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            677777777777777777777777776653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.33  E-value=0.00038  Score=55.00  Aligned_cols=132  Identities=11%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHh----CCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----CCcchh-H
Q 036775          115 VISGLAMN-GCGRQALQLFSLMII----NGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYE----IVPQTQ-H  182 (293)
Q Consensus       115 li~~~~~~-~~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~  182 (293)
                      +...|... |++++|.+.|.+..+    .| .+.  ..++..+...+.+.|++++|.++|++.....-    .+.+.. .
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            34445555 667777776666543    22 111  23455556666777777777777776654110    111221 2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCc------hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhh
Q 036775          183 YACVVDMYGRAGLLEEAEAFIREM-PIEA------EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT  248 (293)
Q Consensus       183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  248 (293)
                      +...+-++...|+...|.+.+++. ...|      .......|+.++ ..|+.+.............+.|++-
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~  270 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWK  270 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHH
Confidence            223333555567777777777665 2222      222344444444 3444444444444443333444333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=8.8e-05  Score=64.36  Aligned_cols=164  Identities=10%  Similarity=-0.025  Sum_probs=88.3

Q ss_pred             cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CcccHHHHHHHHHhcCCHHHHHHH
Q 036775           53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMNGCGRQALQL  131 (293)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~  131 (293)
                      ...|.+++|..+|++-+.          |..|=..|...|.+++|.++-+.-.+- =..||..-..-+-..++.+.|++.
T Consensus       811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence            344555555555555444          122333444455555555554322111 123555555566666777777776


Q ss_pred             HHHHH----------hCCC---------CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775          132 FSLMI----------INGV---------FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR  192 (293)
Q Consensus       132 ~~~m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (293)
                      |++..          ...+         .-|...|.-....+-..|+.+.|+.+|...+.          |.++++..|-
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~  950 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCI  950 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEee
Confidence            65531          1110         11333333334444456667777666666553          4456666666


Q ss_pred             cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          193 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       193 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      .|+.++|-++-++-+   |......|.+.|-..|++.+|..+|.+..
T Consensus       951 qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            777777777766654   33344456666777777777777776554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=0.00034  Score=57.78  Aligned_cols=156  Identities=9%  Similarity=-0.028  Sum_probs=87.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--c----hhHHHHHHHH
Q 036775          116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--Q----TQHYACVVDM  189 (293)
Q Consensus       116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~----~~~~~~l~~~  189 (293)
                      .++..+..+++.|.+-+.......  -+..-++..-.++...|.+.++...-....+. |-..  +    ...+..+..+
T Consensus       231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a  307 (539)
T KOG0548|consen  231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNA  307 (539)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhh
Confidence            333334444444444444444332  12223333444455555555544443333321 1100  0    1122233446


Q ss_pred             HHhcCChHHHHHHHHhC---CCCchHhH-------------------------HHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775          190 YGRAGLLEEAEAFIREM---PIEAEWSV-------------------------WGALLNACRIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       190 ~~~~g~~~~a~~~~~~~---~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~  241 (293)
                      |.+.++++.++..|++.   -..|+..+                         -..-...+.+.|++..|...|.++.+.
T Consensus       308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr  387 (539)
T KOG0548|consen  308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR  387 (539)
T ss_pred             hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            66677788888887765   11122111                         011123367889999999999999998


Q ss_pred             cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|.|...|....-+|.+.|.+..|.+-.+.-.+
T Consensus       388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            899999999999999999999888876554433

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.28  E-value=1.3e-06  Score=43.45  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRRMGL  277 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  277 (293)
                      .+|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3799999999999999999999999999875

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.27  E-value=0.00089  Score=52.54  Aligned_cols=226  Identities=12%  Similarity=0.023  Sum_probs=157.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccC-----------CCchHHHHH--HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKE-----------AEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~-----------~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      .+.+.|.+++|..=|+...+..+           ..+....+.  ..+..+...|+...|......+.+  -.+.+...+
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~  192 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLR  192 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHH
Confidence            56788999999999999887531           011111222  234446677899999999999887  567788888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHH----HH----
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI----AL----  150 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~l----  150 (293)
                      ..-..+|...|++..|+.=++...+   -++.++-.+-..+...|+.+.++...++..+.  .||...+-    .+    
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~  270 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV  270 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence            8889999999999999887776654   36667777788888899999999888888764  45543211    11    


Q ss_pred             -----HHHHhcCCChhHHHHHHHHhhhhcCCCcc-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHH
Q 036775          151 -----ISACSHGGLVDQGLILFKAMSTVYEIVPQ-----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGAL  218 (293)
Q Consensus       151 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l  218 (293)
                           +......+++.++.+..+...+ .  .|.     ...+..+-.++...|++.+|++.-.+. .+.|+ +.++---
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR  347 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR  347 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence                 1123355677777777776664 2  232     233455667778889999998887776 55665 5677666


Q ss_pred             HHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKKGVSVG  247 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  247 (293)
                      ..+|.-...++.|..-|+...+..+.+..
T Consensus       348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  348 AEAYLGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence            77787778888888888877776655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=0.00014  Score=63.24  Aligned_cols=242  Identities=12%  Similarity=0.079  Sum_probs=156.0

Q ss_pred             chHHHHHHHH--HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCC--------
Q 036775            5 DVVSWTTMIG--GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL--------   74 (293)
Q Consensus         5 ~~~~y~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------   74 (293)
                      |..|-.++++  .|..-|+.+.|.+-.+-++.       ...|..+.+.|.+.++++-|.-.+-.|...+|.        
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            4455555554  35567899999777665543       468999999999999988888777777653332        


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      .++ ..-.-..-.-...|.+++|+.+|++.++.|     .|-..|-..|.|++|.++-+.=-+-.+   ..||-.-...+
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~L  868 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYL  868 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHH
Confidence            121 222233334567799999999999887654     455567778999999998765222222   24666666666


Q ss_pred             hcCCChhHHHHHHHHhhhh--------cCC----------CcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHH
Q 036775          155 SHGGLVDQGLILFKAMSTV--------YEI----------VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG  216 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~--------~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  216 (293)
                      ...++.+.|+++|++....        ...          ..|...|.....-+...|..+.|+.++...+      -|.
T Consensus       869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------D~f  942 (1416)
T KOG3617|consen  869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------DYF  942 (1416)
T ss_pred             HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------hhh
Confidence            7778888888887765320        000          1123334444444444566666666666553      155


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ++++..+-+|+.++|.++-++-     .|...-..|.+.|-..|++.+|...|-+.+
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            6666666778888777665432     344455567889999999999998887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.25  E-value=4.6e-05  Score=59.93  Aligned_cols=142  Identities=12%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +.+|-.+|...-+.+..+.|..+|.+.++.+....+.....+.+.. ...++.+.|..+|+...+  .++.+...|...+
T Consensus         1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~   77 (280)
T PF05843_consen    1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLK--KFPSDPDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
Confidence            3578899999999999999999999998664344444444444433 234667779999999988  5677788888889


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      +.+.+.++.+.|..+|++....      ....|...++-=.+.|+.+.+.++.+++.+.  .|+...+..++.
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            9999999999999999988753      3357888888888899999999999888774  344444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.24  E-value=2.1e-05  Score=51.06  Aligned_cols=80  Identities=13%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhcCC--------ChhHHHHHHHHhhhhcCCCcchhH
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGG--------LVDQGLILFKAMSTVYEIVPQTQH  182 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  182 (293)
                      -...|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++..        ++-..+.+|+.|.. .+++|+..+
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et  106 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence            34456666777999999999999999999 899999999999877553        34467888999987 789999999


Q ss_pred             HHHHHHHHHh
Q 036775          183 YACVVDMYGR  192 (293)
Q Consensus       183 ~~~l~~~~~~  192 (293)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.24  E-value=5.1e-05  Score=62.31  Aligned_cols=120  Identities=16%  Similarity=0.116  Sum_probs=96.4

Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      +.+.+......+++......+++.+..++-+....      -..|..++++.|...|..+.++.+++.=...|+-||..|
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44556666677788888888888899888887743      245677999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA  193 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (293)
                      ++.+|..+.+.|++..|.++...|.. .+...+..|+..-+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999988875 56556666666555555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.21  E-value=4.1e-05  Score=51.79  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=8.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036775          186 VVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       186 l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +..++.+.|++++|...|+.+
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHH
Confidence            344444444444444444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.20  E-value=3.1e-05  Score=53.98  Aligned_cols=94  Identities=11%  Similarity=-0.015  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ...-.+...+...|++++|..+|+.. ...| +..-|..|..++...|++++|...|.......|.++..+-.+..++..
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            44555666778889999999999888 4445 444677777778888999999999998888888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 036775          259 ADRWEDANKIRDEIRR  274 (293)
Q Consensus       259 ~g~~~~a~~~~~~m~~  274 (293)
                      .|+.+.|.+.|+....
T Consensus       116 lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        116 CDNVCYAIKALKAVVR  131 (157)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999999987665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.19  E-value=2.2e-05  Score=50.33  Aligned_cols=92  Identities=10%  Similarity=0.081  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775          183 YACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  260 (293)
                      +..+...+...|++++|..++++. ...|+ ...+..+...+...++++.|...++......+.+..++..+...+...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            445666667777777777777766 33332 3455556666777777777777777777766666677777788888888


Q ss_pred             CHHHHHHHHHHHHH
Q 036775          261 RWEDANKIRDEIRR  274 (293)
Q Consensus       261 ~~~~a~~~~~~m~~  274 (293)
                      ++++|...+++..+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            88888888877654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.0012  Score=52.11  Aligned_cols=192  Identities=9%  Similarity=-0.019  Sum_probs=92.3

Q ss_pred             cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHH
Q 036775           53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQAL  129 (293)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~  129 (293)
                      ....++..|..+++.-.. .+-.....+-.-+..++...|++++|...|..+.+.   +...+-.|..++.-.|.+.+|.
T Consensus        33 ls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            344555555555555433 222222222233455555666666666666555432   3344555555555556666666


Q ss_pred             HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036775          130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI  208 (293)
Q Consensus       130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~  208 (293)
                      .+-....     -+.-....++....+.++-++-.++.+.+...      .+--.+|.......-.+.+|++++++. ..
T Consensus       112 ~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  112 SIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5544421     12223333333344555555555555444421      111122333333333456666666665 33


Q ss_pred             CchHhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775          209 EAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF  256 (293)
Q Consensus       209 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  256 (293)
                      .|+....|.-+.. |.+...++.+..+++-..++.|.++...|....-.
T Consensus       181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~  229 (557)
T KOG3785|consen  181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL  229 (557)
T ss_pred             ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4444444443333 45556666666666666666665555555444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.18  E-value=5.5e-05  Score=48.42  Aligned_cols=94  Identities=12%  Similarity=0.015  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      +|..+...+...|++++|...+++..+..  +.+...+..+...+...++++.|.+.++....  ..+.+..++..+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHH
Confidence            34556667777788888888888776642  33335566666667777777777777777665  233344556666666


Q ss_pred             HHHcCCHHHHHHHHHHhh
Q 036775           88 YVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~  105 (293)
                      +...|+.++|...++...
T Consensus        78 ~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          78 YYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            777777777776666554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.14  E-value=0.00085  Score=59.66  Aligned_cols=176  Identities=9%  Similarity=-0.027  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775           94 VGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM  170 (293)
Q Consensus        94 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  170 (293)
                      ...|+..|-+..+.|+   ..|..|...|...-+...|.+.|+...+.... +..........|.+..+++.|..+.-..
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            4455555544444433   34566666665555666666666665544322 4445555556666666666666553222


Q ss_pred             hhhcCCCcchhH--HHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775          171 STVYEIVPQTQH--YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       171 ~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                      -+  .-+.-...  |....-.|.+.+++.+|...|+.. ...| |...|..+..+|...|.+..|.++|.++....|.+.
T Consensus       553 ~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  553 AQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             hh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            22  11111111  222333355556666666666555 3334 334566666666666666666666666655555444


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      ..--......+..|++.+|...+...
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33333344445556666666555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.14  E-value=0.0002  Score=52.07  Aligned_cols=111  Identities=8%  Similarity=-0.044  Sum_probs=49.9

Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHH
Q 036775           45 LVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLA  120 (293)
Q Consensus        45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~  120 (293)
                      +..+...+...|++++|...+++..+....++ ....+..+...+.+.|++++|...+++..+.   +...+..+..++.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            33444444445555555555555443111111 1234444555555555555555555544432   2223333334444


Q ss_pred             hcCC--------------HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775          121 MNGC--------------GRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus       121 ~~~~--------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                      ..|+              +++|.+++++....  .|+  .|..++..+...|+
T Consensus       118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~  166 (172)
T PRK02603        118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR  166 (172)
T ss_pred             HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence            3333              45666666665543  233  35555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.14  E-value=7.3e-06  Score=51.77  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE  205 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  205 (293)
                      .|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3555666666666554211111233333455555556666666555555

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.12  E-value=1.5e-05  Score=50.29  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                      .|+++.|+.+++++....+..|+...+..+..++.+.|++++|..+++. .+ .+ +.+....-.+..++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~-~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LD-PSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4677888888888877542122445555567777788888888777777 22 11 122333345577777777777777


Q ss_pred             HHHHH
Q 036775           99 QVFNM  103 (293)
Q Consensus        99 ~~~~~  103 (293)
                      ++|++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.11  E-value=0.00017  Score=48.66  Aligned_cols=90  Identities=14%  Similarity=0.050  Sum_probs=38.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC--C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHhHHHHHHHHH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK--D----MISWSTVISGLAMNGCGRQALQLFSLMIINGVF--PDDVTFIALISAC  154 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~  154 (293)
                      .++..+.+.|++++|.+.|+.+.+.  +    ...+..+..++.+.|++++|...|+.+......  .....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3344444444455554444444321  1    112333444444445555555555544432111  0122333444444


Q ss_pred             hcCCChhHHHHHHHHhhh
Q 036775          155 SHGGLVDQGLILFKAMST  172 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~  172 (293)
                      .+.|+.++|.+.++++.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHhCChHHHHHHHHHHHH
Confidence            444555555555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.10  E-value=0.0059  Score=53.87  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=149.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD   93 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   93 (293)
                      ....+++.+|++...++.+.   .||.. |..++.+  ..+.|..++|..+++.... .+.. |..+...+-.+|-..++
T Consensus        19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhh
Confidence            34678999999999998874   45543 3344444  5789999999988888765 2222 77888999999999999


Q ss_pred             HHHHHHHHHHhhhCCcc--cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC----------Chh
Q 036775           94 VGIAIQVFNMLAYKDMI--SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG----------LVD  161 (293)
Q Consensus        94 ~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~  161 (293)
                      .++|..+|++..+.++.  -...+..+|.|.+++.+-.++=-+|-+. .+-+.+.|-++++...+..          -..
T Consensus        93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            99999999999876444  4445667788887776544443333332 3335667777777665332          134


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh-C-CCCc--hHhHHHHHHHHHHhcCChhhchHHHHH
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE-M-PIEA--EWSVWGALLNACRIHRNDEMFDPIRQE  237 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~  237 (293)
                      -|.+.++.+.++.|.--+..-.-.-...+...|++++|.+++.. . ...+  +...-+.-+.-+...+++.+..++..+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            56677777776443212222222334456778999999999943 3 2122  233334455667888999999999988


Q ss_pred             HHhhcCCc
Q 036775          238 LVNKKGVS  245 (293)
Q Consensus       238 ~~~~~~~~  245 (293)
                      +...++.+
T Consensus       252 Ll~k~~Dd  259 (932)
T KOG2053|consen  252 LLEKGNDD  259 (932)
T ss_pred             HHHhCCcc
Confidence            88888776

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.0031  Score=52.38  Aligned_cols=232  Identities=10%  Similarity=-0.047  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC--c----hhHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV--S----NLVGN   82 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~----~~~~~   82 (293)
                      +..+..+.-+..++..|++-+.....   +.-+..-++..-.++...|.+......-....+ .|-..  +    .....
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~e---l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALE---LATDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRELRADYKLIAKALA  302 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh---HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHHHHHHHHHHHHHHH
Confidence            34566677778888999998888877   443333444444557777777666655555444 12110  0    11122


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      .+..+|.+.++++.|+..|.+...+...     -....+....++++.......-.+...- .-...-...+.+.|++..
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A-~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKA-EEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHhccCHHH
Confidence            3444677778889999988886543111     1122233334444444444333222211 111112344556666666


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      |...|.+++.  ..+-|...|+...-+|.+.|.+..|+.--+.. ...|+.. .|..=..++....+++.|...|++..+
T Consensus       377 Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666664  22445566666666666666666666655444 3334332 444444445555666666666666666


Q ss_pred             hcCCchhhHHHH
Q 036775          241 KKGVSVGTFALM  252 (293)
Q Consensus       241 ~~~~~~~~~~~l  252 (293)
                      .+|.+...-..+
T Consensus       455 ~dp~~~e~~~~~  466 (539)
T KOG0548|consen  455 LDPSNAEAIDGY  466 (539)
T ss_pred             cCchhHHHHHHH
Confidence            665444433333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0033  Score=56.32  Aligned_cols=236  Identities=11%  Similarity=0.114  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +..|..+..+-.+.|.+.+|++-|-+.       -|+..|.-++..+.+.|.+++..+.+...++ ..-.|...  ..|+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELI 1173 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHH
Confidence            456778888888888888887665432       3566788899999999999999888888877 45555555  6888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcc--------------------------cHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMI--------------------------SWSTVISGLAMNGCGRQALQLFSLMIING  139 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g  139 (293)
                      -+|++.+++.+-++++.   .|+..                          -|..|...+...|++..|.+.-++.    
T Consensus      1174 ~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred             HHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence            89999988887766552   23333                          3444444444445554444443332    


Q ss_pred             CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHH
Q 036775          140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGA  217 (293)
Q Consensus       140 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~  217 (293)
                        -+..||..+-.+|...+.+..|.     |.. .++-....-..-++.-|...|-+++.+.+++.. |.+ ...-.|+-
T Consensus      1247 --ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred             --cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence              14455555555555554443321     111 112223344566777777777777777777765 433 23334444


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      |.-.|++-. +++..+.++....     ..-.--+++++-+..-|.+..=++..-
T Consensus      1319 LaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1319 LAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444444332 2222222221111     112234567777777777776666543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.02  E-value=0.0003  Score=55.41  Aligned_cols=124  Identities=10%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhCCccc---HHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS---WSTVISG-LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      +|..++...-+.+..+.|..+|.+..+....+   |-..... +...++.+.|..+|+...+. ...+...|..-+..+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            55666666666666667777776666443222   2222222 22245555566666666554 3335555666666666


Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcch---hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQT---QHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +.++.+.|..+|+....  .+.++.   ..|...+..=.+.|+++.+..+.+++
T Consensus        82 ~~~d~~~aR~lfer~i~--~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   82 KLNDINNARALFERAIS--SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HTT-HHHHHHHHHHHCC--TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666664  222222   35666666666666666666666655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.01  E-value=0.00048  Score=49.86  Aligned_cols=114  Identities=8%  Similarity=-0.111  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHH
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQV  100 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  100 (293)
                      +..+...+..+.+..+..-....|..+...+...|++++|...++........++ ...++..+...+...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444555532221233345566666667777888888888888765211111 234677778888888888888888


Q ss_pred             HHHhhhC---CcccHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 036775          101 FNMLAYK---DMISWSTVISGLA-------MNGCGRQALQLFSLM  135 (293)
Q Consensus       101 ~~~~~~~---~~~~~~~li~~~~-------~~~~~~~a~~~~~~m  135 (293)
                      +++..+.   ...++..+...+.       ..|+++.|...+++.
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8877653   2234555555555       677777665555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.99  E-value=0.0026  Score=50.34  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhcC-CChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCchH
Q 036775          146 TFIALISACSHG-GLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREMP--------IEAEW  212 (293)
Q Consensus       146 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~  212 (293)
                      .+..+...|... |++++|.+.|++..+.......    ..++..+...+.+.|++++|.++|++..        .+.+.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            444455667777 8999999999988763221111    3466778889999999999999999871        12222


Q ss_pred             h-HHHHHHHHHHhcCChhhchHHHHHHHhhcCC---c--hhhHHHHHHHHhc--CCCHHHHHHHHHHH
Q 036775          213 S-VWGALLNACRIHRNDEMFDPIRQELVNKKGV---S--VGTFALMSNTFAG--ADRWEDANKIRDEI  272 (293)
Q Consensus       213 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~li~~~~~--~g~~~~a~~~~~~m  272 (293)
                      . .+...+-++...|+...|...++......|.   +  -.....|+.++-.  ...++++..-|+.+
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            2 2333344567789999999999998876542   2  3345667777764  45677776666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.98  E-value=0.00025  Score=57.95  Aligned_cols=85  Identities=9%  Similarity=-0.060  Sum_probs=39.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  198 (293)
                      +...|++++|++.|++..+.... +...|..+..++.+.|++++|...++.+.+.  -+.+...|..+..+|...|++++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence            33445555555555555443322 3344444444455555555555555555431  12233344444455555555555


Q ss_pred             HHHHHHhC
Q 036775          199 AEAFIREM  206 (293)
Q Consensus       199 a~~~~~~~  206 (293)
                      |...|++.
T Consensus        89 A~~~~~~a   96 (356)
T PLN03088         89 AKAALEKG   96 (356)
T ss_pred             HHHHHHHH
Confidence            55555444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.97  E-value=0.0014  Score=58.36  Aligned_cols=125  Identities=10%  Similarity=0.024  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACS  155 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~  155 (293)
                      .|..|...|....+...|.+.|++.-+-   |...+......|++..+++.|..+.-..-+... ..-...|...--.|.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            4455555555555555555555554433   333444455555555555555555221111100 000011111222334


Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +.++..++..-|+...+  --+-|...|..++.+|.+.|++..|.++|.+.
T Consensus       574 ea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             CccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            44555555555554443  12233445555555555555555555555544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.97  E-value=0.00012  Score=53.66  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=73.4

Q ss_pred             HHHHHh--hhCCcccHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC--------------
Q 036775           99 QVFNML--AYKDMISWSTVISGLAM-----NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG--------------  157 (293)
Q Consensus        99 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------------  157 (293)
                      ..|++.  ..++..+|..+++.|.+     .|..+=....++.|.+.|+.-|..+|+.|+..+=+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            444444  34566677777777654     467777788888899999999999999999887643              


Q ss_pred             --CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775          158 --GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL  195 (293)
Q Consensus       158 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  195 (293)
                        .+-+-|++++++|.. .|+-||.+++..+++.+.+.+.
T Consensus       115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence              245668899999987 8999999999999999876554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.96  E-value=0.00025  Score=46.20  Aligned_cols=79  Identities=16%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHccCC-CchHHHHHHHHHHhcccC--------cchHHHHHHHHHHhhcCCCCchhH
Q 036775           10 TTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSIS--------ALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ..-|..+...+++.....+|+.+++.| + .|+..+|+.++.+.++..        .....+.+|+.|.. .++.|+..+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et  106 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET  106 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence            445667777799999999999999998 8 899999999998866543        34456788999988 789999999


Q ss_pred             HHHHHHHHHH
Q 036775           81 GNAVINMYVK   90 (293)
Q Consensus        81 ~~~l~~~~~~   90 (293)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.96  E-value=0.0005  Score=48.11  Aligned_cols=93  Identities=10%  Similarity=-0.022  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG  157 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  157 (293)
                      .-.+...+...|++++|.++|+....-   +..-|-.|..++-..|++++|+..|.......+. |...+-.+-.++...
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l  116 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            344555566677777777777766543   3344666666677777777777777777666543 566666667777777


Q ss_pred             CChhHHHHHHHHhhhhc
Q 036775          158 GLVDQGLILFKAMSTVY  174 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~~~  174 (293)
                      |+.+.|.+.|+..+...
T Consensus       117 G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            77777777777766533

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.95  E-value=0.00047  Score=50.12  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM  189 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (293)
                      +..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..+.  .+.+...+..+..+
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~  115 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            44444445555555555555555544322221  234555555555666666666666655541  12233344445555


Q ss_pred             HHhcCCh
Q 036775          190 YGRAGLL  196 (293)
Q Consensus       190 ~~~~g~~  196 (293)
                      |...|+.
T Consensus       116 ~~~~g~~  122 (172)
T PRK02603        116 YHKRGEK  122 (172)
T ss_pred             HHHcCCh
Confidence            5555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=4.5e-05  Score=58.38  Aligned_cols=105  Identities=10%  Similarity=-0.014  Sum_probs=82.8

Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a  231 (293)
                      +.+.+++.+|+..|.+.++  -.+-|..-|..-..+|.+.|.++.|++--+.. .+.|+.. +|..|-.+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            5678999999999999986  23446677788889999999999998877766 6667654 899999999999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g  260 (293)
                      ...|++..+..|.+......|=.+=.+.+
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            99999999988888755555544433333

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.92  E-value=0.007  Score=48.45  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH  225 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~  225 (293)
                      +.+..+.-+...|+...|.++-.+.    ++ |+..-|-..+.+|+..++|++-..+-..   +..+.-|..++.+|...
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            3444455555666666555554433    22 5666666667777777777666665433   22334566667777777


Q ss_pred             CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          226 RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       226 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      |+..+|..+..+         ..+..-+..|.+.|++.+|.+.
T Consensus       251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHH
Confidence            777666666554         1234456666666776666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.91  E-value=0.00086  Score=57.35  Aligned_cols=63  Identities=10%  Similarity=-0.051  Sum_probs=44.9

Q ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      +...|..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|...+++..+
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33456666555556777888888887777654  5677777777777788888888887777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.85  E-value=0.00058  Score=49.46  Aligned_cols=79  Identities=10%  Similarity=-0.045  Sum_probs=40.0

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      .|..+...+...|++++|+..|++.......|  ...++..+...+...|+.++|...++...+.  .+....++..+..
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~  114 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence            34445555555566666666666655432221  1235555555666666666666666665541  1222334444444


Q ss_pred             HHH
Q 036775          189 MYG  191 (293)
Q Consensus       189 ~~~  191 (293)
                      .+.
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.85  E-value=7e-05  Score=44.59  Aligned_cols=56  Identities=7%  Similarity=0.039  Sum_probs=45.7

Q ss_pred             HHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...+...|+++.|...++.+.+..|.++..+..+..++...|++++|..+|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44577888888888888888888888888888888888888888888888888765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.84  E-value=0.0011  Score=44.57  Aligned_cols=104  Identities=9%  Similarity=0.008  Sum_probs=59.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC---chhHHHHHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRYDLSV---SNLVGNAVINM   87 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~   87 (293)
                      -.++-..|+.++|+.+|++....| ....  ...+..+.+++...|++++|..+++....  ..|.   +......+..+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHH
Confidence            345556677777777777777765 3333  23455556667777777777777777665  2222   22233334445


Q ss_pred             HHHcCCHHHHHHHHHHhhhCCcccHHHHHHHH
Q 036775           88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGL  119 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~  119 (293)
                      +...|+.++|++.+-...-++...|..-|..|
T Consensus        85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y  116 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY  116 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777666555444444444444333

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.83  E-value=0.00045  Score=56.93  Aligned_cols=96  Identities=18%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      .....+++.+....+.+.+..++.+.+..  ....-..|..++++.|.+.|..+.+..+++.=.. +|+-||..+++.||
T Consensus        67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lm  145 (429)
T PF10037_consen   67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLM  145 (429)
T ss_pred             HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHH
Confidence            34455556555566666666666666544  1212233445777777777777777777766654 67777777777777


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036775          188 DMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       188 ~~~~~~g~~~~a~~~~~~~  206 (293)
                      +.+.+.|++..|.++...|
T Consensus       146 d~fl~~~~~~~A~~V~~~~  164 (429)
T PF10037_consen  146 DHFLKKGNYKSAAKVATEM  164 (429)
T ss_pred             HHHhhcccHHHHHHHHHHH
Confidence            7777777777777776666

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.80  E-value=0.0019  Score=43.50  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=70.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHH
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYG  191 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  191 (293)
                      +..++-..|+.++|+.+|++....|....  ...+..+.+++...|++++|..++++....+.-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566778889999999998888876644  34566777788888999999999988876321100 2222233445677


Q ss_pred             hcCChHHHHHHHHhCCCCchHhHHHHHHHHHH
Q 036775          192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACR  223 (293)
Q Consensus       192 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~  223 (293)
                      ..|+.++|+.++-..- .++...|..-|..|.
T Consensus        87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            8888888888876541 123334555554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00042  Score=53.22  Aligned_cols=99  Identities=17%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  197 (293)
                      +.+.+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++--+..+.   +.|. ..+|..|..+|...|+++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence            45677888888888888776443 667777777788888888888877766664   2343 467888888888888888


Q ss_pred             HHHHHHHhC-CCCchHhHHHHHHHH
Q 036775          198 EAEAFIREM-PIEAEWSVWGALLNA  221 (293)
Q Consensus       198 ~a~~~~~~~-~~~~~~~~~~~l~~~  221 (293)
                      +|++.|++. .+.|+-.+|-.=+..
T Consensus       167 ~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  167 EAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHHhhhccCCCcHHHHHHHHH
Confidence            888887776 677777666655555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.78  E-value=0.00073  Score=55.22  Aligned_cols=103  Identities=10%  Similarity=-0.053  Sum_probs=85.2

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND  228 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~  228 (293)
                      ...+...|++++|+..|+++.+  .-+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            3456678999999999999986  23446678888999999999999999999998 5555 455788888889999999


Q ss_pred             hhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775          229 EMFDPIRQELVNKKGVSVGTFALMSNT  255 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~~~~~~~li~~  255 (293)
                      +.|...+++..+..|.+......+..+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999988887776665444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.78  E-value=0.00013  Score=44.03  Aligned_cols=64  Identities=8%  Similarity=0.021  Sum_probs=55.7

Q ss_pred             hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 036775          211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD-RWEDANKIRDEIRR  274 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  274 (293)
                      +...|..+...+...|+++.|...|++..+..|.++..|..+..++...| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34567778888899999999999999999999989999999999999999 79999999988765

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.78  E-value=0.0073  Score=50.45  Aligned_cols=182  Identities=15%  Similarity=0.125  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHH
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQV  100 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  100 (293)
                      .+.....+++....-...|+ .+|...++...+..-++.|..+|.++.+ .+..+ ++.+.++++..|| .++..-|.++
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrI  423 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRI  423 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence            44555666666554323343 4567777877888888999999999988 56555 6777788887776 4678889999


Q ss_pred             HHHhhhC--Cccc-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775          101 FNMLAYK--DMIS-WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus       101 ~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      |+--.++  |... -..-+.-+...++-..|..+|++....++.|+.  ..|..++..-+.-|++..+.++-+++.....
T Consensus       424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            9877654  4333 345667777888888999999998887666553  6899999888889999988888877765322


Q ss_pred             --CCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          176 --IVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       176 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                        ..+....-..+++.|.-.+....-..-++.+
T Consensus       504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  504 ADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             hhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence              2233334455666776666665555555554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.78  E-value=0.00015  Score=43.53  Aligned_cols=55  Identities=15%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW  212 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~  212 (293)
                      +.|++++|.++|+.+..  ..+-+...+..+..+|.+.|++++|..+++++ ...|+.
T Consensus         3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            45566666666666654  12234445555666666666666666666666 334443

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.72  E-value=0.012  Score=45.26  Aligned_cols=172  Identities=13%  Similarity=0.104  Sum_probs=92.1

Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH---HHHHHHHHHcCCHHHHHHHHHHhhhCCc----ccHHHHHH
Q 036775           45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG---NAVINMYVKCGDVGIAIQVFNMLAYKDM----ISWSTVIS  117 (293)
Q Consensus        45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~  117 (293)
                      +......+...|+++.|.+.|+.+..  ..|-+....   -.++.+|.+.+++++|...+++..+..+    ..|-..+.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            33344455667888888888888877  333333332   4567788888889999888888875311    12333333


Q ss_pred             HHHh--c---------------CCH---HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCC
Q 036775          118 GLAM--N---------------GCG---RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV  177 (293)
Q Consensus       118 ~~~~--~---------------~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  177 (293)
                      +.+.  .               .|.   .+|+..|+++.+               -|-.+.-..+|...+..+...    
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----  173 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----  173 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----
Confidence            3221  1               112   233344444433               333334445555444444431    


Q ss_pred             cchhHHHHHHHHHHhcCChHHHHHHHHhC----C-CCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          178 PQTQHYACVVDMYGRAGLLEEAEAFIREM----P-IEAEWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       178 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      . ...-..+.+.|.+.|.+.-|..=++.+    + ..........+..+|...|..+.|..+...+
T Consensus       174 l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1 111124555666666666665555555    2 2223334555666677777777666665544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.69  E-value=0.014  Score=44.99  Aligned_cols=174  Identities=11%  Similarity=0.005  Sum_probs=108.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhCCcc---c---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYKDMI---S---WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH  156 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  156 (293)
                      .....+.+.|++++|.+.|+++....+.   .   .-.++.++.+.+++++|...+++..+..+.-....+...+.+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            4455566789999999999998864222   1   234567788899999999999998876443333344444444331


Q ss_pred             --C---------------CC---hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHH
Q 036775          157 --G---------------GL---VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG  216 (293)
Q Consensus       157 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  216 (293)
                        .               .+   ..+|...|+.+++                -|-...-..+|...+..+...--.. -.
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~  179 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-EL  179 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence              1               11   1233344444443                2322233444444444331010000 11


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcCCc---hhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKGVS---VGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      .+..-|.+.|.+..|..-++.+.+..|.+   ......++.+|...|..++|.++...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            23444888999999999999999887654   4456778899999999999999887654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.69  E-value=0.0028  Score=44.61  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhH
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMII-----NGVFPDDVT  146 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~  146 (293)
                      ..++..+...|++++|..+.+.+...   +...|..+|.++...|+..+|.+.|+++.+     .|+.|+..+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            44555666667777777776666543   444666667777777777777666666532     366666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.68  E-value=0.003  Score=54.13  Aligned_cols=141  Identities=7%  Similarity=-0.079  Sum_probs=88.0

Q ss_pred             CCCCchhHHHHHHHHHHHc--C---CHHHHHHHHHHhhhCCc---ccHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 036775           73 DLSVSNLVGNAVINMYVKC--G---DVGIAIQVFNMLAYKDM---ISWSTVISGLAMN--------GCGRQALQLFSLMI  136 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~--------~~~~~a~~~~~~m~  136 (293)
                      ..+.+...|...+.+....  +   +.++|..+|++..+.|+   ..|..+..++...        .+...+.+...+..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4455555555555553332  1   25566777776665432   2333332222221        12234444444433


Q ss_pred             hC-CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhH
Q 036775          137 IN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSV  214 (293)
Q Consensus       137 ~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~  214 (293)
                      .. ....+...|..+.......|++++|...+++..+ .  .|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            32 1233556777776666778999999999999986 3  367888999999999999999999999887 56666555


Q ss_pred             HH
Q 036775          215 WG  216 (293)
Q Consensus       215 ~~  216 (293)
                      |.
T Consensus       489 ~~  490 (517)
T PRK10153        489 LY  490 (517)
T ss_pred             HH
Confidence            43

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0037  Score=50.38  Aligned_cols=257  Identities=9%  Similarity=-0.053  Sum_probs=158.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcC
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCG   92 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~   92 (293)
                      ..+.+..++..|+..+....+..  +-+..-|..-...+...++++++.--.++-.+   +.| ....+...-.++...+
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhH
Confidence            35566677788888888877752  33344555555556666666666544433322   111 1123334444455555


Q ss_pred             CHHHHHHHHHHhh---------------hCC---c--ccHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           93 DVGIAIQVFNMLA---------------YKD---M--ISWSTV-ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        93 ~~~~A~~~~~~~~---------------~~~---~--~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      +..+|.+.++.-.               ..+   +  .+|..+ ..++...|+.++|.++--..++....   ..+...+
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~v  208 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYV  208 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHh
Confidence            5555554443221               001   1  122222 24566778888888877776654322   2333344


Q ss_pred             HH--HhcCCChhHHHHHHHHhhhhcCCCcchhH-------------HHHHHHHHHhcCChHHHHHHHHhC-CCCc-----
Q 036775          152 SA--CSHGGLVDQGLILFKAMSTVYEIVPQTQH-------------YACVVDMYGRAGLLEEAEAFIREM-PIEA-----  210 (293)
Q Consensus       152 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-----  210 (293)
                      ++  +--.++.+.+...|++..+   ..|+...             +..-.+-..+.|++.+|.+.+.+. ++.|     
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~  285 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT  285 (486)
T ss_pred             cccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence            43  3356778888888888775   2354322             222233456789999999999887 4444     


Q ss_pred             hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      +...|.....+..+.|+.++|..-.++..+.++.-...|..-..++...++|++|.+-|+...+..-.+..
T Consensus       286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~  356 (486)
T KOG0550|consen  286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI  356 (486)
T ss_pred             hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence            45556666666889999999999999998888777777888888888899999999999877654333333

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.65  E-value=0.00081  Score=45.72  Aligned_cols=87  Identities=9%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------ccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEK--------------TKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~--------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      |..++.++|.++++.|+.+....+++..-.              ..+..|+..+..+++.+++..+++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            567899999999999999999998876522              112457777777777777777777777777777777


Q ss_pred             hcCCCCchhHHHHHHHHHHHc
Q 036775           71 RYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        71 ~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      ..+++.+..+|..|++-....
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHh
Confidence            677777777777776654443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.64  E-value=0.04  Score=48.99  Aligned_cols=217  Identities=11%  Similarity=0.032  Sum_probs=135.8

Q ss_pred             ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775           54 SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQ  130 (293)
Q Consensus        54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~  130 (293)
                      ..+++..|.+-...+.+.++..+-..++.+|.  ..+.|..++|..+++....+   |..|...+-.+|-..++.++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678888888888776343333333333333  56789999999888877643   77788889999999999999999


Q ss_pred             HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-C---------hHHHH
Q 036775          131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-L---------LEEAE  200 (293)
Q Consensus       131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~  200 (293)
                      +|++..+.  .|+..-...+..+|.+.+++.+-.++--++.+  ..+-+...+=++++.+...- .         ..-|.
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            99998764  56788888888889988887765555444443  23333433333444443321 1         12344


Q ss_pred             HHHHhCCCCc----hHhHHHHHHHHHHhcCChhhchHHHHH-HHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          201 AFIREMPIEA----EWSVWGALLNACRIHRNDEMFDPIRQE-LVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       201 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +.++.+-..+    +..-...-.......|.+++|..++.. ..+.. +.+...-+.-+..+...++|.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4444441111    111122223345677889999988843 33332 44444555666677777777777777776666


Q ss_pred             cC
Q 036775          275 MG  276 (293)
Q Consensus       275 ~~  276 (293)
                      .|
T Consensus       255 k~  256 (932)
T KOG2053|consen  255 KG  256 (932)
T ss_pred             hC
Confidence            54

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.64  E-value=0.011  Score=42.46  Aligned_cols=132  Identities=13%  Similarity=0.052  Sum_probs=89.6

Q ss_pred             cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhH
Q 036775           72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVT  146 (293)
Q Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~  146 (293)
                      ....|+....-.|..+....|+..+|...|++...-    |......+.++....+++..|...++.+-+.... -+..+
T Consensus        83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~  162 (251)
T COG4700          83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG  162 (251)
T ss_pred             HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence            455677777777888888888888888888877642    6666677777777788888888888887665311 12234


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ...+.+.+...|...+|+..|+.... +  -|+...-......+.+.|+.+++..-+.++
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~-~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAIS-Y--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHH-h--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            55566777788888888888888875 2  355544444455677777776665544333

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.63  E-value=0.00091  Score=49.19  Aligned_cols=87  Identities=9%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             cchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC----------------cchHHH
Q 036775            4 RDVVSWTTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----------------ALSFGQ   62 (293)
Q Consensus         4 p~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~   62 (293)
                      .|-.+|..+++.|.+.     |.++=....+..|.+-| +.-|..+|+.||..+=+..                +.+-|.
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            4555666666666543     45555555666666666 6666666666666654321                334456


Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775           63 YVHSYISTRYDLSVSNLVGNAVINMYVKCG   92 (293)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (293)
                      +++++|.. .|+-||..++..|++.+++.+
T Consensus       124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence            66666666 566666666666666665444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0027  Score=49.05  Aligned_cols=100  Identities=8%  Similarity=0.036  Sum_probs=73.1

Q ss_pred             CcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH-H--hcCChhhchHHHHHHHhhcCCchhhHHH
Q 036775          177 VPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC-R--IHRNDEMFDPIRQELVNKKGVSVGTFAL  251 (293)
Q Consensus       177 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~  251 (293)
                      +-|...|-.|...|...|+++.|..-|.+. .+.| +...+..+..++ .  ......++..+++++.+.+|.++.+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            456778888888888888888888888777 3332 344455555552 2  2234567778888888888888888888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          252 MSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       252 li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      |...+...|++.+|...|+.|.+..
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC
Confidence            8888888888888888888887754

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.57  E-value=0.0014  Score=44.52  Aligned_cols=81  Identities=15%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMI---------------INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY  174 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  174 (293)
                      .++.+++.++++.|+.+....+++..-               .....|+..+..+++.+|+..+++..|.++++...+..
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            345555556666666655555554432               12244666666666666666666666666666666656


Q ss_pred             CCCcchhHHHHHHHHH
Q 036775          175 EIVPQTQHYACVVDMY  190 (293)
Q Consensus       175 ~~~~~~~~~~~l~~~~  190 (293)
                      +++.+..+|..|+.-.
T Consensus        83 ~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   83 PIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            6666666666666543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.56  E-value=0.00013  Score=43.90  Aligned_cols=52  Identities=4%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...|+++.|..+++.+....|.+...+..+..+|.+.|++++|.++++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567777777777777777777777777777777777777777777777655

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.028  Score=45.08  Aligned_cols=84  Identities=11%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       182 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      +.+..+.-+...|+...|.++-.+.++ |+...|...+.+++..+++++...+.+.     ..+|.-|...+.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCC
Confidence            445556666777888888888888874 7777788888888888888777765432     2345678888888888888


Q ss_pred             HHHHHHHHHH
Q 036775          262 WEDANKIRDE  271 (293)
Q Consensus       262 ~~~a~~~~~~  271 (293)
                      ..+|..+...
T Consensus       253 ~~eA~~yI~k  262 (319)
T PF04840_consen  253 KKEASKYIPK  262 (319)
T ss_pred             HHHHHHHHHh
Confidence            8888877765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.52  E-value=0.00053  Score=40.70  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=27.7

Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+.+.|++++|...|+++.+  ..+-+...+..+..++...|++++|..+|++.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555555666666555554  22234445555555555555555555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.52  E-value=0.035  Score=45.13  Aligned_cols=29  Identities=14%  Similarity=0.047  Sum_probs=15.2

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          246 VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       246 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      -+.+.+++.+..-.|++++|.+..++|.+
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            34445555555555555555555555544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.48  E-value=0.013  Score=43.92  Aligned_cols=49  Identities=6%  Similarity=-0.076  Sum_probs=33.7

Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCCchh---hHHHHHHHHhcCCCHHHHH
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGVSVG---TFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~  266 (293)
                      +..-|.+.|.+..|..-++.+.+..|.+..   ....++.+|.+.|..+.+.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            344478888888888888888887766544   4566777888888877443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.46  E-value=0.0019  Score=45.55  Aligned_cols=84  Identities=12%  Similarity=0.023  Sum_probs=39.9

Q ss_pred             HHhcCChHHHHHHHHhC-C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHH
Q 036775          190 YGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK  267 (293)
Q Consensus       190 ~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  267 (293)
                      +...|++++|..+|.-+ - ..-+..-|..|..++...++++.|...|.......+.|+..+-....++...|+.+.|.+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            33455555555555544 1 111222344444444555555555555554444444444444445555555555555555


Q ss_pred             HHHHHH
Q 036775          268 IRDEIR  273 (293)
Q Consensus       268 ~~~~m~  273 (293)
                      .|....
T Consensus       127 ~f~~a~  132 (165)
T PRK15331        127 CFELVN  132 (165)
T ss_pred             HHHHHH
Confidence            554443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=97.44  E-value=0.014  Score=39.44  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036775          213 SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK  278 (293)
Q Consensus       213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  278 (293)
                      ...+.-+......|.-+.-.++++.+.+...+++.....+..+|.+.|+..++.+++++..+.|++
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            345566777888999999999999988777888999999999999999999999999999998874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.00072  Score=47.68  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCCCcc
Q 036775          214 VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR-----RMGLKKKTGC  283 (293)
Q Consensus       214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~  283 (293)
                      ....++..+...|+++.+..+++.+....|.+...|..++.+|...|+..+|.++|+++.     +.|+.|.+.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            345566667889999999999999999999999999999999999999999999998764     3588887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.40  E-value=0.0017  Score=39.00  Aligned_cols=64  Identities=16%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHh
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYIST   70 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~   70 (293)
                      +..+|..+-..+...|++++|+..|++..+..  +-+...|..+..++...| ++++|.+.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34566677777777777777777777776642  334556666666666666 56777766666554

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.37  E-value=0.053  Score=43.82  Aligned_cols=241  Identities=12%  Similarity=0.070  Sum_probs=123.3

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHH--HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHH
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG   95 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   95 (293)
                      -.|+++.|.+-|+.|...    |....  ...|.-..-+.|+.+.|.+.-+..-.  .-+--.-.+.+++...|..|+++
T Consensus       132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChH
Confidence            346666666666666542    22221  22222233455666666655555433  12222334566677777777777


Q ss_pred             HHHHHHHHhhhC-----Cccc--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCChhHHH
Q 036775           96 IAIQVFNMLAYK-----DMIS--WSTVISGLA---MNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGLVDQGL  164 (293)
Q Consensus        96 ~A~~~~~~~~~~-----~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~  164 (293)
                      .|+++.+.-...     ++.-  --.|+-+-.   -..+...|...-.+..+  +.||.. .-..-..++.+.|+..++-
T Consensus       206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence            777777655422     2110  111111110   11233333333333222  334432 2233445677888888888


Q ss_pred             HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      .+++.+=+ .  .|.+.++  .+..+.+.|+.  +.+=+++.    ..+| +..+-..+..+....|++..|..--+...
T Consensus       284 ~ilE~aWK-~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         284 KILETAWK-A--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             hHHHHHHh-c--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            88888764 3  3444333  22334455543  22222222    2334 34455566666777888877766555544


Q ss_pred             hhcCCchhhHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 036775          240 NKKGVSVGTFALMSNTFAG-ADRWEDANKIRDEIRR  274 (293)
Q Consensus       240 ~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~  274 (293)
                      .. .|....|..|...-.- .|+-+++...+-+-.+
T Consensus       357 r~-~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         357 RE-APRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hh-CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            43 3355667777776544 4888888887766544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.36  E-value=0.0039  Score=48.44  Aligned_cols=58  Identities=12%  Similarity=-0.011  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  138 (293)
                      +.-+...|...|++++|...|+.+.+.      ....+-.+..++...|+.++|..+|+++.+.
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344455555555555555555555431      1122333344455555666666666555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.34  E-value=0.00094  Score=40.66  Aligned_cols=56  Identities=7%  Similarity=-0.017  Sum_probs=44.1

Q ss_pred             HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ..|.+.++++.|..+++.+....|.++..+.....++.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677788888888888888888878888888888888888888888888877763

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.32  E-value=0.004  Score=50.28  Aligned_cols=260  Identities=12%  Similarity=-0.030  Sum_probs=162.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccC--CCchHHHHHHHHHHhcccCcchHHHHHHHHHHh---hcCCC-CchhHHHHHHHHH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKE--AEPNEATLVNVLSACSSISALSFGQYVHSYIST---RYDLS-VSNLVGNAVINMY   88 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~l~~~~   88 (293)
                      -+++.|+...-+.+|+...+-|.  ...=+.+|+-+.++|.-.+++++|.+....=..   ..|-+ -.......|.+.+
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl  105 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL  105 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence            57889999999999999988761  112234566777778888888888876543211   01111 1222334455556


Q ss_pred             HHcCCHHHHHHHHHHhh----hC-----CcccHHHHHHHHHhcCC--------------------HHHHHHHHHHHH---
Q 036775           89 VKCGDVGIAIQVFNMLA----YK-----DMISWSTVISGLAMNGC--------------------GRQALQLFSLMI---  136 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~----~~-----~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~---  136 (293)
                      --.|.+++|+-+-.+-.    +-     ....+..+...|...|+                    ++.|.++|.+=.   
T Consensus       106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~  185 (639)
T KOG1130|consen  106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS  185 (639)
T ss_pred             hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777765433221    11     22345556666655442                    233444443311   


Q ss_pred             -hCCCC-CcHhHHHHHHHHHhcCCChhHHHHHHHHhhh---hcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC----
Q 036775          137 -INGVF-PDDVTFIALISACSHGGLVDQGLILFKAMST---VYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM----  206 (293)
Q Consensus       137 -~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----  206 (293)
                       +.|-. .--..|..|-..|.-.|+++.|+...+.-.+   .+|-+. ....+..+..++.-.|+++.|.+.++..    
T Consensus       186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence             11111 0123455555566667889998876654322   244333 3457888999999999999999988865    


Q ss_pred             ---C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          207 ---P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       207 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                         + ......+..+|...|.-..++++|..++.+-...      .......+-+|..+|...|..++|+.+.+.-.+
T Consensus       266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence               2 2335557778888888888899998888654431      133456788899999999999999988776554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.30  E-value=0.0065  Score=47.24  Aligned_cols=97  Identities=10%  Similarity=0.106  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWG  216 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~  216 (293)
                      .|...+....+.|++++|...|+.+.+.+   |+    ...+..+...|...|++++|...|+.+ ...|+    ...+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34444444455677777777777776522   32    235566667777777777777777666 21222    22334


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      .+...+...|+.+.|..+++.+.+..|.+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44445566667777777776666666544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.29  E-value=0.096  Score=45.20  Aligned_cols=181  Identities=12%  Similarity=0.066  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            9 WTTMIGGYAERGF--CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         9 y~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ++..=.+|.+.++  +-+.+.-++++++.| -.|+...   +...|+-.|.+.+|.++|.+-    |..      +..+.
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~e------nRAlE  666 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHE------NRALE  666 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHc----Cch------hhHHH
Confidence            4445556666554  334444556677776 6677543   344577788888888888763    332      34456


Q ss_pred             HHHHcCCHHHHHHHHHHhh---------hC-----CcccHHHHHHHHHhcCCHHHHHHHHHH------HHhCCCC---Cc
Q 036775           87 MYVKCGDVGIAIQVFNMLA---------YK-----DMISWSTVISGLAMNGCGRQALQLFSL------MIINGVF---PD  143 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~---------~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~~---p~  143 (293)
                      .|.....++.|.+++....         ++     ++.-=.+....+...|+.++|..+.-+      +.+-+-+   .+
T Consensus       667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e  746 (1081)
T KOG1538|consen  667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE  746 (1081)
T ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence            6666666666666553321         11     222223445556667777777665421      1111111   23


Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh
Q 036775          144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS  213 (293)
Q Consensus       144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~  213 (293)
                      ..+...+...+.+...+..|-++|..|-.          ...+++.....++|++|..+-++. +..||+.
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy  807 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY  807 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence            34555555555666777778888877753          234677788889999999998888 4445543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.047  Score=41.65  Aligned_cols=134  Identities=8%  Similarity=-0.135  Sum_probs=97.4

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH-----
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-----  184 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----  184 (293)
                      ..-+.++..+.-.|.+.--+.++++..+...+-++.....+.+.-.+.|+.+.|..+|+...+.. -+.|..+.+     
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHh
Confidence            34566777777888888889999999888777788888889999999999999999999776532 233333333     


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          185 CVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      .....|.-.+++.+|...+.++.  ...|....|.-.-+..-.|+...|.+..+.+.+..|.
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            33344666788889999998883  2234444454444556678899999999888887754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.015  Score=44.23  Aligned_cols=141  Identities=10%  Similarity=0.031  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF  101 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  101 (293)
                      .+..+++|++-..        ...++++..+...+.+.-....+....+ ...+.++.....|+..-.+.||.+.|...|
T Consensus       165 ~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf  235 (366)
T KOG2796|consen  165 EESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYF  235 (366)
T ss_pred             hhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3666777765433        3556777777888888888888888888 555667777788888888889999999988


Q ss_pred             HHhhhC----CcccHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          102 NMLAYK----DMISWSTVI-----SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       102 ~~~~~~----~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ++..+.    |..+++.++     ..+.-.+++..|...|.+....... |....|.-.-+..-.|+..+|.+.++.+.+
T Consensus       236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            877643    444444433     3445567888888888887766543 556666666666677888888888888875

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.24  E-value=0.079  Score=43.17  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=107.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC-------CcccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK-------DMISWSTVISGLAM---NGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      ..++-.|-...+++...++.+.+...       ....-....-++.+   .|+.++|++++..+......+++.||..+.
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            45666788999999999999999865       22223345556777   899999999999977666777888988888


Q ss_pred             HHHhc---------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC-hH---HHHHHH---HhC-------CC
Q 036775          152 SACSH---------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL-LE---EAEAFI---REM-------PI  208 (293)
Q Consensus       152 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~---~~~-------~~  208 (293)
                      ..|-.         ...+++|...|.+.-+   +.|+...--.+...+...|. ++   +..++-   ...       .-
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            77642         2346778877776543   34554322223333333343 22   222222   111       12


Q ss_pred             CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      ..+.--+.+++.++.-.|+.++|.+..+++.+..||.
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            2344467788899999999999999999999887654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.24  E-value=0.077  Score=42.92  Aligned_cols=251  Identities=11%  Similarity=-0.009  Sum_probs=152.9

Q ss_pred             HHHHHHHHHH--cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHHHHHHHHHHhhcCCCCchhH--HH
Q 036775            9 WTTMIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFGQYVHSYISTRYDLSVSNLV--GN   82 (293)
Q Consensus         9 y~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~   82 (293)
                      |.+|-.++..  .|+-..|.++-.+..+.  +..|......++.+  ..-.|+++.|.+-|+.|..    .|....  ..
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLR  158 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLR  158 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHH
Confidence            4444444443  36666776666554432  44444444455544  4456888888888888865    222221  12


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHh--HHHHHHHHHh-
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDV--TFIALISACS-  155 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~-  155 (293)
                      .|.-.-.+.|+.+.|..+-++.-+.   -.-.+...+...+..|+|+.|+++++.-+... +.+++.  .-..|+.+-. 
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            3333344567888888777776653   23467888999999999999999999876543 344442  2223333221 


Q ss_pred             --cCCChhHHHHHHHHhhhhcCCCcchhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhc
Q 036775          156 --HGGLVDQGLILFKAMSTVYEIVPQTQH-YACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       156 --~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a  231 (293)
                        -..+...|...-.+..   .+.|+..- -..-..+|.+.|+..++-.+++.+ +..|++..+.    .|.....-+.+
T Consensus       239 s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta  311 (531)
T COG3898         239 SLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTA  311 (531)
T ss_pred             HHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcH
Confidence              1123444554444333   44566432 223456899999999999999999 6677776443    34444444555


Q ss_pred             hHHHHHHHh---hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          232 DPIRQELVN---KKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       232 ~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      ..-+++..+   ..+.+...-..+..+....|++..|..--+..
T Consensus       312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            555554444   34666777778888888899988777655543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.03  Score=43.50  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=45.7

Q ss_pred             cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCchHh-HHHH
Q 036775          143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLLEEAEAFIREM-PIEAEWS-VWGA  217 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~-~~~~~~~-~~~~  217 (293)
                      |...|..|-.+|...|+.+.|...|....+..|  ++...+..+..++...   ..-.++..+|+++ ...|+.. ....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            445555555555555555555555555554222  2333333333333221   1233455555555 3333322 2333


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      |...+...|++.+|...+++|.+..|+
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            333355555555555555555555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.16  E-value=0.05  Score=39.29  Aligned_cols=100  Identities=5%  Similarity=-0.073  Sum_probs=49.9

Q ss_pred             CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---hHhHHHH
Q 036775          142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGA  217 (293)
Q Consensus       142 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~  217 (293)
                      |+...-..+..+..+.|+..+|...|++... .-+..|......+.++....+++..|...++++ ...|   ++.+...
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            4444445555555555555555555555553 223334445555555555555555555555555 1111   1122233


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhc
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      +.+.+...|.+..|+.-|+......
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~y  190 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYY  190 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhC
Confidence            4444555555555555555554433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.13  E-value=0.065  Score=40.12  Aligned_cols=179  Identities=12%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      +....=.....+...|++.+|++.|+.+....+. +--......+..++-+.|+++.|...++.+.+...-.|.. .+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHH
Confidence            3334344455677888999999999998875311 2223455567777888888888888888887733322222 1222


Q ss_pred             HHHHHHHcCC-------------HHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH
Q 036775           84 VINMYVKCGD-------------VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL  150 (293)
Q Consensus        84 l~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  150 (293)
                      .+.+.+....             ..+|..           .+..++.-|=.+.-..+|...+..+.+.    =...-..+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~-----------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~i  147 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIE-----------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYI  147 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHH-----------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHH-----------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            2222221111             112222           2333444444444455555544444321    01111224


Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHH
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a  199 (293)
                      ..-|.+.|.+..|..-++.+.+...-.+. ......++.+|.+.|..+.+
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            45567777777777777777763221111 13445666677777766643

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.09  E-value=0.0022  Score=39.63  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNM  103 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~  103 (293)
                      ++.+...|...|++++|+..|++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~   30 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEK   30 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444444444444443

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.07  E-value=0.087  Score=44.93  Aligned_cols=158  Identities=12%  Similarity=0.068  Sum_probs=111.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcH-----hHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHH
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIING-VFPDD-----VTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHY  183 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  183 (293)
                      .+++..+-.||-+.+++.+.+..+.+ +.-..     -+|..++..++.    ....+.|.++++.+.+.   -|+...|
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf  269 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF  269 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence            44555566899999999998876543 32111     234444444443    45678899999999863   3666555


Q ss_pred             HH-HHHHHHhcCChHHHHHHHHhCC-CC-----chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH-
Q 036775          184 AC-VVDMYGRAGLLEEAEAFIREMP-IE-----AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT-  255 (293)
Q Consensus       184 ~~-l~~~~~~~g~~~~a~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-  255 (293)
                      .. -.+.+...|++++|++.|++.- ..     .....+--+.-.+...+++++|...+..+.+....+..+|..+..+ 
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            43 4566778999999999999762 11     1223344456668889999999999999999888888888776555 


Q ss_pred             HhcCCCH-------HHHHHHHHHHHH
Q 036775          256 FAGADRW-------EDANKIRDEIRR  274 (293)
Q Consensus       256 ~~~~g~~-------~~a~~~~~~m~~  274 (293)
                      +...|+.       ++|.++|.+...
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            4457877       899999987654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.03  E-value=0.0046  Score=38.17  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKT----KEAEPN-EATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      ..+|+.+-..|...|++++|+..|++..+.    |...|+ ..++..+..++...|++++|.+.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            346788888888889999998888887542    111122 33555555666666666666666665543

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.2  Score=44.02  Aligned_cols=250  Identities=11%  Similarity=0.055  Sum_probs=147.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---------
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA---EPNEATLVNVLSACSSISALSFGQYVHSYISTRY---------   72 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------   72 (293)
                      ...+|..+...--..|+++.|..+++.=...+..   -.+..-+...+.-+.+.|+.+....++-++....         
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l  585 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL  585 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888888889999998888754433311   1223345566777888888888888777776611         


Q ss_pred             -CCCCchhHHHHHHH--------HHHHcCCHHHHHHHHHHhh-------hCCcccHHHHHHHHHhcCCHH----------
Q 036775           73 -DLSVSNLVGNAVIN--------MYVKCGDVGIAIQVFNMLA-------YKDMISWSTVISGLAMNGCGR----------  126 (293)
Q Consensus        73 -~~~~~~~~~~~l~~--------~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~----------  126 (293)
                       ..|.....|.-++.        .+.+.++..++...|..-.       +.-...-....+.+.+.....          
T Consensus       586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~  665 (829)
T KOG2280|consen  586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM  665 (829)
T ss_pred             HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence             11112222211111        1112222222222221100       011111223334444433311          


Q ss_pred             HHHHHHHHHH-hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775          127 QALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE  205 (293)
Q Consensus       127 ~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  205 (293)
                      +-+.+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+     -||-..|-.-+.+++..++|++-+++-+.
T Consensus       666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks  740 (829)
T KOG2280|consen  666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS  740 (829)
T ss_pred             HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence            1122222222 22434444556666666778899999988877765     27888888888899999999998888877


Q ss_pred             CCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775          206 MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD  270 (293)
Q Consensus       206 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  270 (293)
                      .+.   +.-|.-++.+|.+.|+.++|.+++-+...        +.-...+|.+.|++.+|.++--
T Consensus       741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             cCC---CCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence            741   34467788899999999999988755422        1156788888888888877643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.99  E-value=0.0058  Score=37.08  Aligned_cols=52  Identities=10%  Similarity=-0.031  Sum_probs=22.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      +.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34444444444444444443222 33334444444444444444444444444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.96  E-value=0.086  Score=45.91  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                      +....-.+..++.+.|.-++|.+.|-+...     |.     +-+..|...++|.+|.++-++..
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~avelaq~~~  905 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGEAVELAQRFQ  905 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence            344444555566666666666655433221     22     13345555666666666666653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.92  E-value=0.14  Score=44.30  Aligned_cols=175  Identities=13%  Similarity=0.053  Sum_probs=100.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH-----HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV-----NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      ...++-.|.+.+|-++|.+--..+   --...|.     ....-+...|..++-..+.+.-.+ ..  .+..--.+....
T Consensus       639 A~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~-WA--r~~kePkaAAEm  712 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD-WA--RNIKEPKAAAEM  712 (1081)
T ss_pred             HHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-Hh--hhcCCcHHHHHH
Confidence            345667788888888776532211   0011111     122224444544444444433322 11  111111345666


Q ss_pred             HHHcCCHHHHHHHHH-------------HhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           88 YVKCGDVGIAIQVFN-------------MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~-------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      +...|+.++|..+.-             ++...+..+...+...+.+...+.-|-++|..|-+.         .+++...
T Consensus       713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlH  783 (1081)
T KOG1538|consen  713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLH  783 (1081)
T ss_pred             hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhe
Confidence            777788777765542             222235556666666777788888899999887432         3467778


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                      ...+++++|..+-+..-+   +.||+  |......++...++++|.+.|.+.+
T Consensus       784 ve~~~W~eAFalAe~hPe---~~~dV--y~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  784 VETQRWDEAFALAEKHPE---FKDDV--YMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             eecccchHhHhhhhhCcc---ccccc--cchHHHHhhhhhhHHHHHHHHHHhc
Confidence            899999999998887654   34554  4445555666666666666665553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.88  E-value=0.2  Score=41.49  Aligned_cols=129  Identities=12%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHH
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVV  187 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~  187 (293)
                      .+|...++.-.+..-.+.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+.-...   .||...| +..+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl  473 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL  473 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence            356667777777777778888888887777 5667777777776554 46667777777755431   2444333 3455


Q ss_pred             HHHHhcCChHHHHHHHHhC--CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          188 DMYGRAGLLEEAEAFIREM--PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       188 ~~~~~~g~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      ..+.+.++-+.|..+|+..  .+..+  ...|..+|.--+.-|+...+..+-+++....
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~  532 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV  532 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence            6667777777787777754  22222  3456667766666777766666655555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.86  E-value=0.14  Score=43.70  Aligned_cols=178  Identities=12%  Similarity=0.054  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-----hHHHHHHHHHHH----cC
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-----LVGNAVINMYVK----CG   92 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~   92 (293)
                      +.-..-+|+-+..-  +||.   +..+++..+-.|+-+.+.+.+....+..++....     ..|...+..++.    ..
T Consensus       173 v~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~  247 (468)
T PF10300_consen  173 VYFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV  247 (468)
T ss_pred             HHHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence            33444455555553  4443   3345555666677777777776665522332221     123333333333    33


Q ss_pred             CHHHHHHHHHHhhh--CCcccHHHHH-HHHHhcCCHHHHHHHHHHHHhCC---CCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775           93 DVGIAIQVFNMLAY--KDMISWSTVI-SGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLIL  166 (293)
Q Consensus        93 ~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~  166 (293)
                      +.+.|.++++.+.+  |+...|...- +.+...|++++|++.|++.....   .+.....+--+.-.+.-..++++|...
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            56777777777766  4544443322 44555677777777777654211   112233444555566667777777777


Q ss_pred             HHHhhhhcCCCcchhHHHHH-HHHHHhcCCh-------HHHHHHHHhC
Q 036775          167 FKAMSTVYEIVPQTQHYACV-VDMYGRAGLL-------EEAEAFIREM  206 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~  206 (293)
                      |..+.+...  .+..+|.-+ ..++...|+.       ++|..+|++.
T Consensus       328 f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  328 FLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            777775322  223333322 2244455666       7777777666

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.83  E-value=0.099  Score=43.14  Aligned_cols=127  Identities=14%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccH-HHHHHH
Q 036775           43 ATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISW-STVISG  118 (293)
Q Consensus        43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~li~~  118 (293)
                      ..|...+++-.+..-++.|..+|-...+ .+ +.+++.++++.+..++ .|+...|.++|+--..  +|...| +..+.-
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3444455555555555555555555555 33 4445555555554443 2444555555554332  232222 223333


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      +.+.++-+.|..+|+..... +..+  ...|..+|..-..-|++..+..+-+.+.+
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            44455555555555533221 1111  23455555555555555555555555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.82  E-value=0.092  Score=44.23  Aligned_cols=166  Identities=14%  Similarity=0.046  Sum_probs=97.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD   93 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   93 (293)
                      +...-.++++++.+....-.-...++  ......+++-+-+.|..+.|+++-..-..             -.....+.|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence            34455677777766664211111022  33456677777777777777766444322             2445567788


Q ss_pred             HHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 036775           94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV  173 (293)
Q Consensus        94 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  173 (293)
                      ++.|.++.++..  +...|..|.....+.|+++-|++.|.+..+         |..++-.|.-.|+.+.-.++.+.... 
T Consensus       334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-  401 (443)
T PF04053_consen  334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-  401 (443)
T ss_dssp             HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-
Confidence            888877765554  555888888888888888888888887542         45566667777887777777766654 


Q ss_pred             cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchH
Q 036775          174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW  212 (293)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  212 (293)
                      .|      -++....++.-.|+.++..+++.+.+..|-.
T Consensus       402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A  434 (443)
T PF04053_consen  402 RG------DINIAFQAALLLGDVEECVDLLIETGRLPEA  434 (443)
T ss_dssp             TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred             cc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence            22      1455556666678888888888877644443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.71  E-value=0.11  Score=43.23  Aligned_cols=64  Identities=11%  Similarity=0.019  Sum_probs=56.6

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH----HHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      .+...|+.+-.+|.+.|++++|+..|++...   +.|+.    .+|..+..+|...|+.++|.+.++...+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3677899999999999999999999999888   55664    3589999999999999999999999887

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.66  E-value=0.3  Score=40.47  Aligned_cols=257  Identities=11%  Similarity=0.076  Sum_probs=150.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHH------HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEA------TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV   89 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   89 (293)
                      +-+.+++.+|.++|.+.-+..  ..++.      .-+-+++++. .++.+.....+....+..|..+-...+..|  .+.
T Consensus        16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y   90 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAY   90 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHH
Confidence            346789999999999987752  33322      2334555554 456666666666666634433333333332  355


Q ss_pred             HcCCHHHHHHHHHHhhhC------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHhHH
Q 036775           90 KCGDVGIAIQVFNMLAYK------------------DMISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPDDVTF  147 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~  147 (293)
                      +.+++++|.+.+..-.+.                  |...=+..+.++...|++.++..+++++...    ....+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            778899998877655432                  1112345677888999999999999998754    334688888


Q ss_pred             HHHHHHHhcC--------CC-------hhHHHHHHHHhhhh-----cCCCcchhHHHHHHHHHHhc-----CChHHHHHH
Q 036775          148 IALISACSHG--------GL-------VDQGLILFKAMSTV-----YEIVPQTQHYACVVDMYGRA-----GLLEEAEAF  202 (293)
Q Consensus       148 ~~ll~~~~~~--------~~-------~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~  202 (293)
                      +.++-.++++        ..       ++.+.-+.+++...     ..+-|.......++....-.     --+-.+...
T Consensus       171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~  250 (549)
T PF07079_consen  171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN  250 (549)
T ss_pred             HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence            8866655543        11       22233333333321     02234444444444443321     112344445


Q ss_pred             HHhCCCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhhc-----CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          203 IREMPIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNKK-----GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       203 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      |+.--+.|+.. ....+...+.+  +.+.+..+.+.+....     ..-..+|..++....+.++...|.+.+.-+.-  
T Consensus       251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--  326 (549)
T PF07079_consen  251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--  326 (549)
T ss_pred             HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--
Confidence            55445566644 34444444544  5666666665554432     22356799999999999999999999987765  


Q ss_pred             CCCCC
Q 036775          277 LKKKT  281 (293)
Q Consensus       277 ~~p~~  281 (293)
                      +.|+.
T Consensus       327 ldp~~  331 (549)
T PF07079_consen  327 LDPRI  331 (549)
T ss_pred             cCCcc
Confidence            44443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.65  E-value=0.02  Score=44.01  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=65.4

Q ss_pred             HHHHHhh--hCCcccHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC-------------
Q 036775           99 QVFNMLA--YKDMISWSTVISGLAMN-----GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG-------------  158 (293)
Q Consensus        99 ~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------------  158 (293)
                      ..|....  ++|..+|...+..+...     +.++-....++.|++.|+.-|..+|+.|+..+-+..             
T Consensus        55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H  134 (406)
T KOG3941|consen   55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH  134 (406)
T ss_pred             hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence            3444444  34556666666665432     455666667777888888888888888888765543             


Q ss_pred             ---ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775          159 ---LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL  195 (293)
Q Consensus       159 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  195 (293)
                         +-+=++.++++|.. +|+.||.++-..|++++.+.+.
T Consensus       135 YP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  135 YPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             CchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence               23346788888885 7888888888888888877664

>PRK15331 chaperone protein SicA; Provisional

Probab=96.64  E-value=0.047  Score=38.66  Aligned_cols=90  Identities=8%  Similarity=-0.105  Sum_probs=70.6

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh---hCCcccHHHHHHHHHhcC
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDMISWSTVISGLAMNG  123 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~  123 (293)
                      .....+-..|++++|..+|+.+..  --+-+..-+..|..++-..+++++|...|...-   ..|+..+-....++...|
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            333445678999999999999877  233445556888888888999999999997654   347777778888999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 036775          124 CGRQALQLFSLMIIN  138 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~  138 (293)
                      +.+.|...|......
T Consensus       120 ~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 KAAKARQCFELVNER  134 (165)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999988763

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.60  E-value=0.045  Score=45.33  Aligned_cols=66  Identities=8%  Similarity=-0.177  Sum_probs=54.0

Q ss_pred             CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775           39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK  107 (293)
Q Consensus        39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  107 (293)
                      +.+...++.+..++.+.|++++|...+++..+   +.|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34466788888899999999999999999876   34543    35889999999999999999999888764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.59  E-value=0.14  Score=35.70  Aligned_cols=127  Identities=11%  Similarity=-0.014  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG  191 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (293)
                      ...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+....++.  .     .+.......++.|.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence            34555666666666667777766666553 45566666666666542 2233333331  1     12222334666666


Q ss_pred             hcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc-CChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       192 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      +.+.++++..++.+++..      ...+..+... ++.+.|.+++++     ..++..|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence            677777777777776532      2222333333 566666666554     1244566666655543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.50  E-value=0.0031  Score=31.80  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHH
Q 036775          235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANK  267 (293)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  267 (293)
                      +++..+..|.++..|..+...|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            567788889999999999999999999999863

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.059  Score=47.05  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      .+..-...+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..++|++-+++-..++      ++.-|.-++
T Consensus       678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV  751 (829)
T KOG2280|consen  678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV  751 (829)
T ss_pred             hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence            34334444445556667777888888888888888888888888888888888887777665543      245667778


Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+|.+.|+.++|.+++-....   .       .-...+|.+.|++.+|.++--+-
T Consensus       752 e~c~~~~n~~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  752 EACLKQGNKDEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHHHhcccHHHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHHHHh
Confidence            888888888888887766542   1       14666777788877777665443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.13  Score=39.58  Aligned_cols=98  Identities=11%  Similarity=0.031  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccC-CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVI   85 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~   85 (293)
                      .|+.-+. +.+.|++..|...|....+..+ ..-....+..|..++...|+++.|..+|..+.+...-.|.. ....-|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4555555 3345556666666666655420 01112233345555555555555555555555532222221 3333444


Q ss_pred             HHHHHcCCHHHHHHHHHHhhh
Q 036775           86 NMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      .+..+.|+.++|...|+++.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            444455555555555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.29  E-value=0.011  Score=31.85  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      +..+...|...|+++.|.+.+++..+..|.++..+..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            44455555566666666666666666555555555444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.12  Score=42.07  Aligned_cols=118  Identities=11%  Similarity=0.018  Sum_probs=70.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      .+.|.+.|++..|..-|++...-                  -..+++.+..++.+.+++..|++..+..+..+. +|+..
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence            45677888888888887775421                  223566666677777777777777777666543 35555


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChH-HHHHHHHhC
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLE-EAEAFIREM  206 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~-~a~~~~~~~  206 (293)
                      .-.--.++...|+++.|...|+.+++   +.|+- .+-+.|+.+--+..... +..++|..|
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666777777777777777764   23433 33333444433333332 335555555

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.24  E-value=0.078  Score=40.97  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=77.7

Q ss_pred             CcchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC----------------cchHH
Q 036775            3 KRDVVSWTTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----------------ALSFG   61 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a   61 (293)
                      ++|-.+|-+.+..+...     +.++=....++.|..-| +.-|..+|..||..+-+..                +-+-+
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~  142 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA  142 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence            46788888888877654     55666677788898888 9999999999999876543                34557


Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHhh
Q 036775           62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-GIAIQVFNMLA  105 (293)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~  105 (293)
                      .+++++|.. .|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus       143 I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  143 IKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            889999998 89999999999999999887753 33444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.064  Score=41.20  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=44.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCch-HhHHHHH
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE-WSVWGAL  218 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~~~l  218 (293)
                      |+.-+. +.+.|++..|.+.|...++  +.+-+   ...+..|..++...|++++|..+|..+    +..|. +..+.-|
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            444443 2344445556555555554  22221   123444555555555555555555554    11111 1233334


Q ss_pred             HHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      ..+....|+.+.|..+++++.+..|.+
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            444455555555555555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.10  E-value=0.2  Score=36.52  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhCC------cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYKD------MISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      .+..+...|++.|+.+.|.+.|.++.+..      +..+-.+|+.....+++..+.....+...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45566677777777777777777766542      23455566666666677666666665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.01  E-value=0.31  Score=33.92  Aligned_cols=84  Identities=12%  Similarity=0.013  Sum_probs=39.1

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHH
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR  126 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  126 (293)
                      .++..+...+.......+++.+.. .+ +.+...++.++..|++.+ ..+..+.++.  ..+......+++.|.+.+.++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~   86 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE   86 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence            344444445555555555555555 22 244445555666655442 2222233321  223333334555555555555


Q ss_pred             HHHHHHHHH
Q 036775          127 QALQLFSLM  135 (293)
Q Consensus       127 ~a~~~~~~m  135 (293)
                      ++..++.++
T Consensus        87 ~~~~l~~k~   95 (140)
T smart00299       87 EAVELYKKD   95 (140)
T ss_pred             HHHHHHHhh
Confidence            555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=1.2  Score=40.08  Aligned_cols=171  Identities=11%  Similarity=0.052  Sum_probs=106.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHH----HHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL----SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      -|..+.+..-++-|+.+-+.-      ..+..+...+.    .-+.+.|++++|..-|-+-..  -+.|.     .++.-
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~k  406 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKK  406 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHH
Confidence            345555666666676654432      22333333333    335677888888777666543  23333     23555


Q ss_pred             HHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           88 YVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                      |....++..--.+++.+.+.   +...-+.|+.+|.+.++.++-.++.+.-. .|..  ..-....+..|.+.+-+++|.
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE  483 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence            66666666666777777665   45567788999999999988888776654 3322  112445677777888888887


Q ss_pred             HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                      .+-.....      +...   +--.+-..+++++|++.++.++
T Consensus       484 ~LA~k~~~------he~v---l~ille~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  484 LLATKFKK------HEWV---LDILLEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHhcc------CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence            76555432      2222   3334556789999999999985

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.19  Score=40.84  Aligned_cols=94  Identities=9%  Similarity=-0.056  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      .+++.+.-+|.+.+++.+|++.-... .. .+|+.....=..++...|+++.|...|+++.+..|.|...-+-|+.+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35667777888888888888877766 32 44666666677778888889999999988888888887777777777766


Q ss_pred             CCCHHHH-HHHHHHHHH
Q 036775          259 ADRWEDA-NKIRDEIRR  274 (293)
Q Consensus       259 ~g~~~~a-~~~~~~m~~  274 (293)
                      ..++.+. .++|..|-.
T Consensus       338 ~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            6555554 667777754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.90  E-value=1.1  Score=39.45  Aligned_cols=221  Identities=11%  Similarity=0.051  Sum_probs=114.7

Q ss_pred             CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH--------HHHHHHHHHcCCHHHHHHHHHHhhhCCc
Q 036775           38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG--------NAVINMYVKCGDVGIAIQVFNMLAYKDM  109 (293)
Q Consensus        38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~A~~~~~~~~~~~~  109 (293)
                      -.|.+..|..+.......-.++.|+..|-+...-.|+..-...-        .+=+.+  --|++++|+++|-++.++|.
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL  765 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL  765 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence            45788888888877777677777777666554322221111111        111222  24788999999888877653


Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHH----------------HHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH------
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSL----------------MIINGVFPDDVTFIALISACSHGGLVDQGLILF------  167 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~----------------m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~------  167 (293)
                           .|..+.+.|+|-.+.++++.                |-..  -.+...|......|...|+.+.-.+.+      
T Consensus       766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f  838 (1189)
T KOG2041|consen  766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELF  838 (1189)
T ss_pred             -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence                 23444445555554444432                1110  012223444444455554444322222      


Q ss_pred             HHhhhh-cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-----
Q 036775          168 KAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK-----  241 (293)
Q Consensus       168 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  241 (293)
                      ..+... ...+-+....-.+.+++.+.|..++|.+.+-+.+. |..     -+..|...+++.+|.++-+...-.     
T Consensus       839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pka-----Av~tCv~LnQW~~avelaq~~~l~qv~tl  912 (1189)
T KOG2041|consen  839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PKA-----AVHTCVELNQWGEAVELAQRFQLPQVQTL  912 (1189)
T ss_pred             hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cHH-----HHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            111110 12344566677788889999999999888877752 222     234455555555444443322110     


Q ss_pred             -------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          242 -------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       242 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                             .-.+.. ..--|..+.+.|++-+|-+++-+|.+
T Consensus       913 iak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  913 IAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence                   000111 11235566677777777777777754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.89  E-value=0.73  Score=39.02  Aligned_cols=135  Identities=10%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ....+.++..+-+.|..+.|+++-..-.             .-.....+.|+++.|.++.+.       ..+...|..|.
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg  354 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLG  354 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHH
Confidence            4447888898999999999987754422             223445577888888776433       34677999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      ....+.|+++-|++.|.+..     -|..|+-.|.-.|+.+...++.+.....|-      ++....++.-.|+.++..+
T Consensus       355 ~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~  423 (443)
T PF04053_consen  355 DEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD  423 (443)
T ss_dssp             HHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999775     467788888889999888888888776653      4445555666788888888


Q ss_pred             HHHHhh
Q 036775          166 LFKAMS  171 (293)
Q Consensus       166 ~~~~~~  171 (293)
                      ++.+..
T Consensus       424 lL~~~~  429 (443)
T PF04053_consen  424 LLIETG  429 (443)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.86  E-value=0.0016  Score=45.69  Aligned_cols=129  Identities=10%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA  193 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (293)
                      .++..+.+.+.+..+..+++.+...+...+....+.++..|++.+..+...++++...   .+.+     ..++..+.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhc
Confidence            3566667778888888888888877666678888888888888887777777776322   2222     3467777888


Q ss_pred             CChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       194 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      |.+++|.-++.+++......      ..+...++++.|..++..     ..++.+|..++..+...+.
T Consensus        84 ~l~~~a~~Ly~~~~~~~~al------~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDEAL------EILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTTCS------STSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred             chHHHHHHHHHHcccHHHHH------HHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence            88888888888875322211      113345566666643322     3456788888888877665

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=95.85  E-value=0.55  Score=36.71  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCcccHHHHHHHHHhcCCHHHHHHHH
Q 036775           63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KDMISWSTVISGLAMNGCGRQALQLF  132 (293)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~  132 (293)
                      ++.+.+....+-.++..+....+..+++.+++.+-.++++....     .|...|...|......|+..-...+.
T Consensus       187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            33333333333444444444455555555555555555544332     14444555555555555544444433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.83  E-value=0.34  Score=32.93  Aligned_cols=52  Identities=17%  Similarity=0.055  Sum_probs=22.9

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      +..|+.+.|++.|.+....-+ -....||.-..++.-.|+.++|..-+++..+
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            344444444444444433211 1334444444444444444444444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.68  Score=36.25  Aligned_cols=141  Identities=11%  Similarity=0.035  Sum_probs=79.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      .....|+..+|..+|+...+.... +...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence            345567777777777777665433 3455566667777777777777777776541 11111112223445555555555


Q ss_pred             HHHHHHHhCCCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCC
Q 036775          198 EAEAFIREMPIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       198 ~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g  260 (293)
                      +...+-.+....| |...-..+...+...|+.+.|...+-.+.+.+  -.+...-..|+..+.-.|
T Consensus       221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            5555555553344 44455556666777777777766654444433  234445555666655555

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.74  E-value=0.52  Score=37.53  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCC---hhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          126 RQALQLFSLMIINGVFPDDV-TFIALISACSHGGL---VDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       126 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      +.++.+|+.+.+.|...+-. -+.+-+-++.....   ...+..+++.+.+ .++++....|..+.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG  224 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence            44555666666655544321 22222222222211   3355566666665 46666655555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.70  E-value=0.16  Score=39.72  Aligned_cols=80  Identities=13%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh----hcCCCcchhHHH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQTQHYA  184 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~  184 (293)
                      ..++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+++.+    ..|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            445666777777777777777777777665443 666777777777777777777777666653    346667666665


Q ss_pred             HHHHH
Q 036775          185 CVVDM  189 (293)
Q Consensus       185 ~l~~~  189 (293)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55555

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.68  E-value=0.37  Score=33.39  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=11.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~  138 (293)
                      .++.+|.+.+++++|...+++..+.
T Consensus        52 ~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   52 DLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3444444444444444444444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.47  Score=37.86  Aligned_cols=149  Identities=11%  Similarity=-0.014  Sum_probs=101.6

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCC
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGD   93 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~   93 (293)
                      .+|++.+|-..++++.+.  .|.|...+...-.+|.-.|+.......++.+..  .-.++.    .+...+.-++..+|-
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            356777777888888776  677777888888888888988888888888765  233444    333455666778899


Q ss_pred             HHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775           94 VGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPDDVTFIALISACSHGGLVDQGLILF  167 (293)
Q Consensus        94 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  167 (293)
                      +++|++.-++..+-   |.-.-.++...+-.+|++.++.++..+-...   +-..-..-|-...-.+...+.++.|+++|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999988887764   4445566777788889999998887664321   11111122333333455668899999888


Q ss_pred             HHh
Q 036775          168 KAM  170 (293)
Q Consensus       168 ~~~  170 (293)
                      +.-
T Consensus       271 D~e  273 (491)
T KOG2610|consen  271 DRE  273 (491)
T ss_pred             HHH
Confidence            754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.55  E-value=0.85  Score=36.87  Aligned_cols=200  Identities=11%  Similarity=0.009  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH----HHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---hh
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVF----QEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---NL   79 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~   79 (293)
                      .+|..+..+.++.|.+++++..-    +-........---..|..+-+++-+.-++.+++.+-..-....|..|.   -.
T Consensus        44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq  123 (518)
T KOG1941|consen   44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ  123 (518)
T ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence            34556667777777777665432    111111000111223444445555555566666655554443344331   12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCcHhH
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGCGRQALQLFSLMII----NGVFPDDVT  146 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~  146 (293)
                      ...++..++.-.+.++++++.|+...+-         ...+|-.|...|.+..|+++|.-+..+..+    .++.--..-
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            3345666777778899999999877642         345788999999999999998877666543    233311122


Q ss_pred             HH-----HHHHHHhcCCChhHHHHHHHHhhhhcCCCcch----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          147 FI-----ALISACSHGGLVDQGLILFKAMSTVYEIVPQT----QHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       147 ~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      |.     .+.-++...|.+-+|.+.-++..+..-...|.    .....+.+.|...|+.+.|+.-|+..
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            32     33345677888888877776665422222233    34556778899999999988887765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.54  E-value=0.79  Score=35.14  Aligned_cols=67  Identities=15%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             HHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           88 YVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      -.+.|++++|.+.|+.+...      ...+--.++.++.+.+++++|+...++....-+.-...-|..-|.++
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            34667777777777777653      12234445566677777777777777766543322223344444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.54  E-value=0.069  Score=28.61  Aligned_cols=29  Identities=17%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKT   35 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~   35 (293)
                      .+|..+...|.+.|++++|.++|++..+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45777888888888888888888888885

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.83  Score=34.80  Aligned_cols=201  Identities=9%  Similarity=-0.034  Sum_probs=104.7

Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--cccHHHHHHHHHh
Q 036775           44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTVISGLAM  121 (293)
Q Consensus        44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~  121 (293)
                      .|.-...+|....++++|...+....+  +...+...|.       ....++.|.-+.+++.+-+  +..|+.-...|..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344455566677777777777666655  3333322221       1223344444444444332  2235555666777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----CCcchhHHHHHHHHHHhcCChH
Q 036775          122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE----IVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      +|.++.|-..+++.-+.                ...-++++|+++|++......    ...-...+..+.+.|.+..+++
T Consensus       104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            77777766666654321                123344555555554432110    0111233455556667777777


Q ss_pred             HHHHHHHhCC-------CCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCchhhHHHHHHHHhcCCCHHHH
Q 036775          198 EAEAFIREMP-------IEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNKK----GVSVGTFALMSNTFAGADRWEDA  265 (293)
Q Consensus       198 ~a~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a  265 (293)
                      +|-..+.+-+       .-++. ..|.+.|-.+....++..|+..++.-.+..    +.+..+...|+.+|- .|+.+++
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~  246 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI  246 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence            6665554441       11221 134444555666677777777776644322    345567777777764 4566666


Q ss_pred             HHHHH
Q 036775          266 NKIRD  270 (293)
Q Consensus       266 ~~~~~  270 (293)
                      .+++.
T Consensus       247 ~kvl~  251 (308)
T KOG1585|consen  247 KKVLS  251 (308)
T ss_pred             HHHHc
Confidence            65543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.41  E-value=0.85  Score=36.87  Aligned_cols=44  Identities=14%  Similarity=0.081  Sum_probs=19.6

Q ss_pred             HcCCHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHhcccCcchHH
Q 036775           18 ERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFG   61 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a   61 (293)
                      ...+.++|+..|.+-...- ...---.++..+..+.++.|.++++
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m   62 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM   62 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence            3455566666655544321 0111122444444555555555444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.40  E-value=0.56  Score=32.54  Aligned_cols=52  Identities=21%  Similarity=0.189  Sum_probs=25.3

Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+.|++++|.+.|+.+.......+ ....-..|+.+|.+.+++++|...+++.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            345555555555555554221111 1123344555555555555555555554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.39  E-value=1.4  Score=37.18  Aligned_cols=55  Identities=13%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          186 VVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       186 l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      +..+..+.|+.++|++.++++ +..|.   ......|+.++...+.+.++..++.+..+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            444445555555555555555 22221   12344455555555555555555555443

The molecular function of this protein is uncertain.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.38  E-value=0.36  Score=39.59  Aligned_cols=233  Identities=11%  Similarity=-0.027  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----HHccCCCchHHHHHHHHHHhcccCcchHHHHHHHH----HHhhcCCC-Cc
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEM----EKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY----ISTRYDLS-VS   77 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~-~~   77 (293)
                      ..|..|-.+|.-.+++++|++.-..=    +..|...-...+...+.+.+--.|.+++|.-.-.+    ..+ .|-. ..
T Consensus        56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are-LgDrv~e  134 (639)
T KOG1130|consen   56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE-LGDRVLE  134 (639)
T ss_pred             HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHH-HhHHHhh
Confidence            34666777777788888888754321    11110111122223344444445666666433222    111 1111 12


Q ss_pred             hhHHHHHHHHHHHcCC--------------------HHHHHHHHHHhhh---C------CcccHHHHHHHHHhcCCHHHH
Q 036775           78 NLVGNAVINMYVKCGD--------------------VGIAIQVFNMLAY---K------DMISWSTVISGLAMNGCGRQA  128 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a  128 (293)
                      ...+-.|...|...|+                    ++.|.++|..-.+   .      ...+|..|.+.|.-.|+++.|
T Consensus       135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a  214 (639)
T KOG1130|consen  135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA  214 (639)
T ss_pred             hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence            2344456666665442                    2334444433221   1      334677777777778899999


Q ss_pred             HHHHHHH----HhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhh----hcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775          129 LQLFSLM----IINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQTQHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       129 ~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a  199 (293)
                      +..-+.-    ++.|-+. ....+..+..++.-.|+++.|.+.|+....    ...-........+|...|.-...+++|
T Consensus       215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA  294 (639)
T KOG1130|consen  215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA  294 (639)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence            8766542    2333332 235677788888889999999998876543    112223345667788889888999999


Q ss_pred             HHHHHhC-------C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          200 EAFIREM-------P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       200 ~~~~~~~-------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      +.++.+-       + .--....+.+|..+|...|..+.|..+.+.-.+
T Consensus       295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9988654       1 122445677888888888988888887765554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.35  E-value=0.17  Score=32.19  Aligned_cols=63  Identities=11%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      +.-++.+-++.+......|++....+.+++|.+.+++..|.++++..+.+.+  .+...|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            5567778888888888999999999999999999999999999998885333  34556766653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.33  E-value=0.15  Score=32.75  Aligned_cols=63  Identities=10%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      +.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+  +....|..+++
T Consensus        25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq   87 (108)
T PF02284_consen   25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ   87 (108)
T ss_dssp             -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence            3446777788888888999999999999999999999999999999987444  33337777764

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK11906 transcriptional regulator; Provisional

Probab=95.29  E-value=1.5  Score=36.81  Aligned_cols=146  Identities=10%  Similarity=0.008  Sum_probs=75.4

Q ss_pred             cchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHc---------CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC
Q 036775           57 ALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKC---------GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG  123 (293)
Q Consensus        57 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~  123 (293)
                      +.+.|..+|.+........|+ ...|..+..++...         .+..+|.++-++..+.   |..+...+..++...+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            455667777777632234443 34444444333322         2234455555555543   4455555555556666


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI  203 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  203 (293)
                      +.+.|...|++....++. ...+|......+.-.|+.++|.+.+++..+....+....+....++.|+..+ +++|+.++
T Consensus       353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            777777777777654322 2334444444455667777777777775542222222233334444555444 45555544


Q ss_pred             H
Q 036775          204 R  204 (293)
Q Consensus       204 ~  204 (293)
                      -
T Consensus       431 ~  431 (458)
T PRK11906        431 Y  431 (458)
T ss_pred             h
Confidence            3

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.98  Score=34.43  Aligned_cols=203  Identities=16%  Similarity=0.088  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      .|.-...+|....++++|...+.+..+-  .+.|...|.       ....++.|.-+.+++.+   .+.-...|+-....
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence            3555566777788888888877776542  233333332       22344555556666544   33444556777888


Q ss_pred             HHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCcHhHHHHHHHHHhcCCChhH
Q 036775           88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GV--FPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      |..+|..+.|-..+++.-+            ...+.++++|+++|.+...-   +-  ..-...+...-..+.+.+.+++
T Consensus       101 Y~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             HHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            8888888887777765532            13355677777777665321   11  1122334555566677777777


Q ss_pred             HHHHHHHhhhh---cCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhC---C---CCchHhHHHHHHHHHHhcCChhhch
Q 036775          163 GLILFKAMSTV---YEIVPQT-QHYACVVDMYGRAGLLEEAEAFIREM---P---IEAEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       163 a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      |-..+..-...   ..--++. ..|-..|-.|.-..++..|...++.-   +   ..-+..+...|+.+| ..|+.+.+.
T Consensus       169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~  247 (308)
T KOG1585|consen  169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK  247 (308)
T ss_pred             HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence            66555443210   0111222 23555566677778899999999884   1   123555777788777 456666665


Q ss_pred             HHH
Q 036775          233 PIR  235 (293)
Q Consensus       233 ~~~  235 (293)
                      .++
T Consensus       248 kvl  250 (308)
T KOG1585|consen  248 KVL  250 (308)
T ss_pred             HHH
Confidence            554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.18  E-value=0.62  Score=31.77  Aligned_cols=137  Identities=12%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH---HHHHHHHHHcC
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG---NAVINMYVKCG   92 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~   92 (293)
                      ..-.|.+++-.++..+.....    +..-++-+|--....-+-+-..++++.+    |--.|...+   ..++.+|++.|
T Consensus        12 ~ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFDis~C~NlKrVi~C~~~~n   83 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSI----GKIFDISKCGNLKRVIECYAKRN   83 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-GGG-S-THHHHHHHHHTT
T ss_pred             HHHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHH----hhhcCchhhcchHHHHHHHHHhc
Confidence            445688888888888876643    2333444443333333444445555554    333343332   34455555544


Q ss_pred             CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775           93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ..              ....+..+..+...|+-+.-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++.+.-+
T Consensus        84 ~~--------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   84 KL--------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ch--------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            32              23345566777888888888888888875 3456778888888899999999999999888876


Q ss_pred             hcCC
Q 036775          173 VYEI  176 (293)
Q Consensus       173 ~~~~  176 (293)
                       .|+
T Consensus       149 -kG~  151 (161)
T PF09205_consen  149 -KGL  151 (161)
T ss_dssp             -TT-
T ss_pred             -hch
Confidence             564

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.16  E-value=2.3  Score=38.12  Aligned_cols=247  Identities=7%  Similarity=-0.047  Sum_probs=124.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      .+..+.+.+++...+..+..      .+.+...-.....+....|+.++|......+=. .| ...+..++.++..+.+.
T Consensus       105 ~l~~La~~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g-~~~p~~cd~l~~~~~~~  176 (644)
T PRK11619        105 FVNELARREDWRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TG-KSLPNACDKLFSVWQQS  176 (644)
T ss_pred             HHHHHHHccCHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cC-CCCChHHHHHHHHHHHc
Confidence            34455566777766652211      234444555666677777776666555555433 12 22344557777777766


Q ss_pred             CCHHHHHHHHHHhh----hCCcccHHHHHHHH-----------H-hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH-
Q 036775           92 GDVGIAIQVFNMLA----YKDMISWSTVISGL-----------A-MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC-  154 (293)
Q Consensus        92 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~-----------~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-  154 (293)
                      |.+.... +++++.    ..+...-..+...+           . -..+...+..++..     +.|+...-..++.++ 
T Consensus       177 g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~  250 (644)
T PRK11619        177 GKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFA  250 (644)
T ss_pred             CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHH
Confidence            6544332 222221    11111111111111           0 01122222222111     122321111111122 


Q ss_pred             -hcCCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhh
Q 036775          155 -SHGGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       155 -~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  230 (293)
                       ....+.+.|...+..........+..  .+...+.......+..+++.+++... ....+......-+......++.+.
T Consensus       251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHH
Confidence             13445677888888765433443333  23344443334433366777777765 222344444555555567888888


Q ss_pred             chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      +...+..+.........-.-.+.+++...|+.++|...|+++
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777775544444555666777877788888888888876

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=0.84  Score=32.80  Aligned_cols=118  Identities=13%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             HHHcCCHHHHHHHHHHhhhCCcccHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCcHh-HHH--HHHHHHhcCCC
Q 036775           88 YVKCGDVGIAIQVFNMLAYKDMISWSTVIS-----GLAMNGCGRQALQLFSLMIINGVFPDDV-TFI--ALISACSHGGL  159 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~--~ll~~~~~~~~  159 (293)
                      +.+.+..++|+.-|..+.+.+--.|-.|..     .....|+...|...|++.-.....|-.. -..  .-...+...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            345567777777777777765555555433     3455677777777777776554444322 111  11122456777


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +++.....+-+.. .+-+.....-..|.-+-.+.|++.+|..+|..+
T Consensus       148 y~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         148 YDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            7777776666654 232223334455666666777777777777766

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.97  E-value=0.69  Score=33.74  Aligned_cols=89  Identities=16%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----Ccc------
Q 036775           44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DMI------  110 (293)
Q Consensus        44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~------  110 (293)
                      .+..+...|.+.|+.+.|.+.+..+.. ....+..  ..+..+|......+++..+...+.+....     |..      
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            455555556666666666666666655 3333332  23455566666666666666655555421     111      


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                      +|..+  .+...+++.+|-+.|-+.
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHcc
Confidence            11111  123456777777766554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.97  E-value=0.063  Score=27.30  Aligned_cols=27  Identities=7%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          248 TFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       248 ~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +|..|...|.+.|++++|.++|++...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            477889999999999999999998543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.95  E-value=0.46  Score=32.33  Aligned_cols=88  Identities=16%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHh---HHHHHHHHHHhc
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWS---VWGALLNACRIH  225 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~---~~~~l~~~~~~~  225 (293)
                      +....|+++.|++.|.+...  -.+-....||.-..++.-.|+.++|++-+++.    +-+ ...   .|..-...|...
T Consensus        52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            46788999999999999885  44556788999999999999999999888876    211 222   222223337888


Q ss_pred             CChhhchHHHHHHHhhcC
Q 036775          226 RNDEMFDPIRQELVNKKG  243 (293)
Q Consensus       226 ~~~~~a~~~~~~~~~~~~  243 (293)
                      |+.+.|..-|+..-+.+.
T Consensus       129 g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             CchHHHHHhHHHHHHhCC
Confidence            999999888887776654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.89  E-value=2.1  Score=36.31  Aligned_cols=58  Identities=14%  Similarity=-0.048  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      .+..++-+.|+.++|.+.|++|.+....- .......|+.++...+.+.++..++.+.-
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            35555666677777777777776543221 23355666777777777777777776654

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.89  E-value=3.5  Score=38.81  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH----HhcCCChhHHHHHHH
Q 036775           93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA----CSHGGLVDQGLILFK  168 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~  168 (293)
                      +++.|+..+..+.   ...|.-.++.--++|.+++|+.++        .|+...+..+..+    +.....+++|--.|+
T Consensus       895 ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye  963 (1265)
T KOG1920|consen  895 RYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYE  963 (1265)
T ss_pred             HHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3444444443332   223333333334444455554443        3454444444333    334455555555555


Q ss_pred             HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHh--HHHHHHHHHHhcCChhhchHHHHHH
Q 036775          169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      ..-+          ...-+.+|..+|+|.+|+.+..++....+..  +-..|+..+...++.-+|-++..+.
T Consensus       964 ~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  964 RCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             Hhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            4322          1224456666666666666666664222322  1244555566666655555554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.86  E-value=0.45  Score=37.21  Aligned_cols=71  Identities=7%  Similarity=0.061  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh----hcCCCCchhHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST----RYDLSVSNLVG   81 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~   81 (293)
                      +..++..+...|+++.+.+.++++...  -+-+...|..++.++.+.|+...|...|+++.+    ..|+.|...+.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            344445555555555555555555544  244455555555555555555555555555444    23444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.80  E-value=1.6  Score=34.55  Aligned_cols=157  Identities=8%  Similarity=0.012  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          111 SWSTVISGLAMNGCGR---QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      +...++.++...+..+   +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|..  .+......+..++
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~--~~~~~e~~~~~~l  162 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIR--SVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHH--hcccccchHHHHH
Confidence            4555666666666543   455555555443222 234455556666667778888888888876  2322223344344


Q ss_pred             HHH---HhcCChHHHHHHHHhC---CCCchHh-HHHH-HHHH-H--HhcCC------hhhchHHHHHHHhhc--CCchhh
Q 036775          188 DMY---GRAGLLEEAEAFIREM---PIEAEWS-VWGA-LLNA-C--RIHRN------DEMFDPIRQELVNKK--GVSVGT  248 (293)
Q Consensus       188 ~~~---~~~g~~~~a~~~~~~~---~~~~~~~-~~~~-l~~~-~--~~~~~------~~~a~~~~~~~~~~~--~~~~~~  248 (293)
                      ..+   .... ...|...+..+   ...|... .... ++.. +  .+.++      .+....++..+.+..  +.+..+
T Consensus       163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            333   3322 23444444444   2222221 1111 1111 1  11111      333444444333322  434433


Q ss_pred             HHHH-------HHHHhcCCCHHHHHHHHHH
Q 036775          249 FALM-------SNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       249 ~~~l-------i~~~~~~g~~~~a~~~~~~  271 (293)
                      -..+       +..+-+.+++++|.+.|+-
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            2222       3345578999999999874

It is also involved in sporulation [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.76  E-value=0.099  Score=26.56  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEME   33 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~   33 (293)
                      +|+.|-..|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47778888888888888888888854

>PRK11906 transcriptional regulator; Provisional

Probab=94.55  E-value=2.5  Score=35.60  Aligned_cols=160  Identities=9%  Similarity=0.001  Sum_probs=100.4

Q ss_pred             HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchH-HHHHHHHHHhc---------ccCcchHHHHHHHHHH
Q 036775            7 VSW--TTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNE-ATLVNVLSACS---------SISALSFGQYVHSYIS   69 (293)
Q Consensus         7 ~~y--~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~   69 (293)
                      ..|  ...+.+....     ...+.|+.+|.+........|+- ..|..+..++.         ...+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            566  6666665552     23567888999988443356663 33333333221         1234455666666666


Q ss_pred             hhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHh
Q 036775           70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDV  145 (293)
Q Consensus        70 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~  145 (293)
                      +  --+.|......+.....-.++++.|..+|++...-   ...+|......+.-+|+.++|.+.+++..+..+. ....
T Consensus       332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            6  44557777777888788888999999999998753   2345655666667789999999999996654221 1223


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKA  169 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~  169 (293)
                      .....+..|+.. .++.|++++-+
T Consensus       410 ~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        410 VIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHcCC-chhhhHHHHhh
Confidence            333344455554 46666666544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.54  E-value=1.2  Score=32.02  Aligned_cols=131  Identities=14%  Similarity=0.082  Sum_probs=72.9

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchh-HHHHHH
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ-HYACVV  187 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~  187 (293)
                      ..|..-++ +.+.+..++|+.-|..+.+.|..--.. .-..........|+...|...|++.-.+.. .|-.. -...|=
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlr  137 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLR  137 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence            34444443 456677888888888888776542111 111222335577888888888888775322 22221 111121


Q ss_pred             --HHHHhcCChHHHHHHHHhCCCCchH---hHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          188 --DMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       188 --~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                        ..+...|.++....-.+-+....++   ..-..|.-+--+.|++..|...|..+....
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence              2345577777777777766212221   122334444567777777777777766643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.43  E-value=1.5  Score=32.68  Aligned_cols=200  Identities=12%  Similarity=-0.036  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc---ccHHHHHH-
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM---ISWSTVIS-  117 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~-  117 (293)
                      ...+......+...+.+..+...+...............+......+...+.+..+.+.+......+.   ........ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            34445555555556666666555555543102233334445555555555666666666666554211   12222222 


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcC
Q 036775          118 GLAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAG  194 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  194 (293)
                      .+...|+++.|...+.+......  ......+......+...++.+.+...+.....  ..+. ....+..+...+...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcc
Confidence            45566666666666666543211  01222333333334455666666666666654  2222 2445555555666666


Q ss_pred             ChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775          195 LLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKG  243 (293)
Q Consensus       195 ~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  243 (293)
                      +++.+...+... ...|+ ...+..+...+...+..+.+...+.+.....+
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            666666666555 22332 22233333333344445555555555555444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.42  E-value=1.6  Score=32.77  Aligned_cols=27  Identities=7%  Similarity=0.140  Sum_probs=15.8

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      .||--|..-+...|+.++|..+|+-..
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLai  264 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAV  264 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            355556666666666666666665443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.33  E-value=1.8  Score=33.22  Aligned_cols=158  Identities=12%  Similarity=0.046  Sum_probs=107.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh-
Q 036775          116 ISGLAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR-  192 (293)
Q Consensus       116 i~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  192 (293)
                      +..-.+.|++++|...|+.+...-+  +-...+-..++.++.+.+++++|....++..+.++-+||.. |..-|.+++. 
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~  119 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF  119 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence            3445678999999999999986532  22456777788889999999999999999998777677663 3333333332 


Q ss_pred             ------cCChHHHHHHHHhC----------CCCchHhH-----------HH-HHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          193 ------AGLLEEAEAFIREM----------PIEAEWSV-----------WG-ALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       193 ------~g~~~~a~~~~~~~----------~~~~~~~~-----------~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                            ..+...+.+-+..+          +-.||+..           +. .+.+-|.+.|.+..|..-++.+.+..+.
T Consensus       120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~  199 (254)
T COG4105         120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD  199 (254)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence                  22333344444333          12233322           11 1223378999999999999999988765


Q ss_pred             chhh---HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          245 SVGT---FALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       245 ~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...+   +-.+..+|...|-.++|.+.-+-+..
T Consensus       200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            5544   56677889999999999988765543

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.28  E-value=0.31  Score=31.04  Aligned_cols=49  Identities=12%  Similarity=0.124  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775           21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      +.-++.+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.
T Consensus        22 D~we~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          22 DGWELRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3345555566666656 777777777888888888888888887777764

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.99  Score=36.11  Aligned_cols=161  Identities=12%  Similarity=-0.013  Sum_probs=116.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH----HHHHHHHhcC
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA----CVVDMYGRAG  194 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g  194 (293)
                      ...+|+..+|-..++++.+. .+.|...+.-.-.+|.-.|+.+.-...++++..  ...++...|.    .+.-++...|
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence            34578889999999998876 445888888888999999999999999988875  3345543333    3444566799


Q ss_pred             ChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc----hhhHHHHHHHHhcCCCHHHHHHH
Q 036775          195 LLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS----VGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       195 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      -+++|++.-++. .+.+ |.-...++.+.....|+.+++.++..+-...-..+    ..-|-...-.+...+.++.|.++
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            999999999888 4444 45566777777888999999998876655543211    12234445566778999999999


Q ss_pred             HHHHHHcCCCCCCc
Q 036775          269 RDEIRRMGLKKKTG  282 (293)
Q Consensus       269 ~~~m~~~~~~p~~~  282 (293)
                      |+.=.-..+..+..
T Consensus       270 yD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  270 YDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHhhccch
Confidence            99754444555554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.17  E-value=1.7  Score=32.35  Aligned_cols=216  Identities=12%  Similarity=-0.020  Sum_probs=154.1

Q ss_pred             CcchHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCcccHHHHHHHHHhcCCHHHHH
Q 036775           56 SALSFGQYVHSYISTRYDLS-VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KDMISWSTVISGLAMNGCGRQAL  129 (293)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~  129 (293)
                      +....+...+..... .... ............+...+.+..+...+.....     .....+......+...++...+.
T Consensus        37 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          37 GELAEALELLEEALE-LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             hhHHHHHHHHHHHHh-cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            445555555555544 1111 1356677888889999999999998887753     24456667777788888999999


Q ss_pred             HHHHHHHhCCCCCcHhHHHHHHH-HHhcCCChhHHHHHHHHhhhhcCC--CcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          130 QLFSLMIINGVFPDDVTFIALIS-ACSHGGLVDQGLILFKAMSTVYEI--VPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       130 ~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +.+.........+ ......... .+...|+++.+...+..... ...  ......+......+...++.+++...+...
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            9999988765443 222223333 78899999999999999854 221  123344455555577889999999999988


Q ss_pred             -CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          207 -PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       207 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                       ...++  ...+..+...+...+..+.+...+.......+.....+..+...+...+..+++...+.+...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence             33444  566777788888899999999999999888876555666666666677789999988887665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.15  E-value=2.3  Score=33.66  Aligned_cols=135  Identities=10%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----c---CCCchH-----HHHHHHHHHhcccCcch---HHHHHHHHHHhhc
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKT----K---EAEPNE-----ATLVNVLSACSSISALS---FGQYVHSYISTRY   72 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~----~---~~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~   72 (293)
                      .||.=...+.+..+++.|...+++..+.    +   ...|+.     .+...++.++...+..+   +|..+.+.+....
T Consensus        38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~  117 (278)
T PF08631_consen   38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY  117 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence            3444444443333777777666655332    1   122332     24445555565555433   4455555554423


Q ss_pred             CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCcH
Q 036775           73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLA--MNGCGRQALQLFSLMIINGVFPDD  144 (293)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~  144 (293)
                      +.+  +.++..-+..+.+.++.+++.+.+.+|...   ....+..+++.+.  .......|...++.+....+.|..
T Consensus       118 ~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  118 GNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             CCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            332  333344455555577777777777777654   2344555554442  223345566666665554444444

It is also involved in sporulation [].

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.14  E-value=0.34  Score=31.18  Aligned_cols=59  Identities=10%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775           24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus        24 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +..+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.+.+.  ....|..++
T Consensus        28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred             HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence            4555556665555 7788888888888888888888888888877763332  222554444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.03  E-value=0.19  Score=24.91  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEK   34 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~   34 (293)
                      .+|..+..+|...|++++|+..|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4677888888888999999998888877

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.99  E-value=4.6  Score=36.55  Aligned_cols=177  Identities=11%  Similarity=-0.036  Sum_probs=113.7

Q ss_pred             HHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcC
Q 036775           46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG  123 (293)
Q Consensus        46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~  123 (293)
                      ..-|....+...++-|..+-+.    .+.+++.  .+.....+.+.+.|++++|...|-+-..--.  -..+|.-|....
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~----~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq  411 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKS----QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHH
Confidence            3444455555556666555444    3444443  2334455666778999999888866543211  123566666777


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI  203 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  203 (293)
                      +..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+..-. ....-|   ....+..+.+.+-.++|..+-
T Consensus       412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd---~e~al~Ilr~snyl~~a~~LA  486 (933)
T KOG2114|consen  412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFD---VETALEILRKSNYLDEAELLA  486 (933)
T ss_pred             HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence            777888888888888886 666668899999999999988887766542 222223   334667778888888888888


Q ss_pred             HhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          204 REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      ...+..++.  ...+   +-..+++++|.++++.+
T Consensus       487 ~k~~~he~v--l~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  487 TKFKKHEWV--LDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHhccCHHH--HHHH---HHHhcCHHHHHHHHhcC
Confidence            877643322  2222   44567788888776544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.91  E-value=0.17  Score=25.13  Aligned_cols=28  Identities=11%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+|..+..+|...|++++|...|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4577777888888888888888877665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.88  E-value=0.29  Score=38.51  Aligned_cols=100  Identities=18%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775           72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV  145 (293)
Q Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  145 (293)
                      .|.+....+...++..-....+++.++..+-+++..      -..+-.++++.+ -.-++++++.++..=.+.|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence            366666677777777777788899999888777642      111222333333 3457789999999989999999999


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      +++.+|..+.+.+++.+|.++...|..
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999999998887765

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.54  E-value=3.5  Score=33.70  Aligned_cols=64  Identities=13%  Similarity=0.061  Sum_probs=43.2

Q ss_pred             hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKK----GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...+|..+...+.+.|.++.|...+..+....    ...+.....-+..+-..|+..+|...+++...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44467777777778888887777777766644    11344455556667777888888888777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=3.8  Score=33.92  Aligned_cols=162  Identities=10%  Similarity=-0.125  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHH-hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCccc-------
Q 036775           40 PNEATLVNVLSA-CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------  111 (293)
Q Consensus        40 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------  111 (293)
                      |.-.+|..+-.- +.-.++.++|.++--...+.  -+.+....-.-..++.-.++.+.|...|++....|+..       
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~  243 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS  243 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh
Confidence            444555444433 56678888888887777661  12222221222234445678899999999888654432       


Q ss_pred             --------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch
Q 036775          112 --------WSTVISGLAMNGCGRQALQLFSLMIIN---GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT  180 (293)
Q Consensus       112 --------~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  180 (293)
                              |..=.+-..+.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+.++|+.--+....   +.+.-
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~sy  320 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSY  320 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHH
Confidence                    222334456789999999999998764   3556667777777788899999999988777664   22221


Q ss_pred             -hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          181 -QHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       181 -~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                       ..|..-..++...++|++|.+-++..
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23334445666788999999988877

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.27  E-value=5.1  Score=34.76  Aligned_cols=96  Identities=9%  Similarity=0.031  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCCCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHH
Q 036775          180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTF  256 (293)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~  256 (293)
                      ..+|..-+.--...|+++.+.-+|++.-+..  =...|-..+.-....|+.+.+..++.+..+-. +..+.+...-....
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence            3556666666667777777777777763221  12234444444444477777776666666544 32333333323333


Q ss_pred             hcCCCHHHHHHHHHHHHHc
Q 036775          257 AGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       257 ~~~g~~~~a~~~~~~m~~~  275 (293)
                      -..|++..|..+++.+...
T Consensus       377 e~~~n~~~A~~~lq~i~~e  395 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESE  395 (577)
T ss_pred             HhhccHHHHHHHHHHHHhh
Confidence            4567888888888776553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.26  E-value=2.2  Score=30.63  Aligned_cols=133  Identities=10%  Similarity=-0.010  Sum_probs=72.0

Q ss_pred             HHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           26 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        26 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      .+.+..+.+.+ ++|+...+..++..+.+.|++....+++..     ++-+|.......+-.+.  +....+.++=-+|.
T Consensus        14 lEYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML   85 (167)
T PF07035_consen   14 LEYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDML   85 (167)
T ss_pred             HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence            34455555566 888888888888888888877665555443     44444433222221221  22233333333444


Q ss_pred             hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775          106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM  170 (293)
Q Consensus       106 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  170 (293)
                      .+=...+..+++.+...|++-+|+.+.+.....    +......++.+..+.++...=..+++-.
T Consensus        86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff  146 (167)
T PF07035_consen   86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF  146 (167)
T ss_pred             HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333335666777777888888888877664322    1122234555555555544444444333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.02  E-value=4.8  Score=33.81  Aligned_cols=67  Identities=13%  Similarity=0.049  Sum_probs=53.8

Q ss_pred             hHhHHHHHHHH--HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 036775          211 EWSVWGALLNA--CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC  283 (293)
Q Consensus       211 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  283 (293)
                      +...-|.|..+  +..+|++.++...-..+.+-.| ++.+|..+.-++....++++|.+++..     ++|+...
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~  527 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM  527 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence            44567777777  5788999999877777766555 999999999999999999999999986     4555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.00  E-value=0.35  Score=23.77  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEK   34 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~   34 (293)
                      ..|..+-..+...|++++|++.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566777888888888888888888877

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.00  E-value=8.3  Score=36.49  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=10.4

Q ss_pred             HHHHhcCCChhHHHHHHHHhh
Q 036775          151 ISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~  171 (293)
                      +.+|...|+|.+|..+..++.
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~  992 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLS  992 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhc
Confidence            344445555555555544443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.96  E-value=0.15  Score=25.56  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=16.5

Q ss_pred             CCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           74 LSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        74 ~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                      .|-+...|+.|...|...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3456666777777777777777664

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.93  E-value=0.3  Score=24.06  Aligned_cols=28  Identities=7%  Similarity=0.185  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ..+..+...+...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566777888888888888888887665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=4  Score=32.18  Aligned_cols=52  Identities=10%  Similarity=0.019  Sum_probs=25.9

Q ss_pred             hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      ....++...|..++.....  ..+.+...-..++.+|...|+.+.|..++..+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            3444555555555555544  222233334455555555555555555555544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.68  E-value=2.8  Score=30.17  Aligned_cols=124  Identities=10%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      |+...|..+++.+.+.|++.....+    ...+ +-+|+......+-.+..  ....+.++--+|.++.+.     .+..
T Consensus        27 ~~~~L~~lli~lLi~~~~~~~L~ql----lq~~-Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~   94 (167)
T PF07035_consen   27 VQHELYELLIDLLIRNGQFSQLHQL----LQYH-VIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEE   94 (167)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHH----Hhhc-ccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHH
Confidence            6677999999999999997766444    4444 56666555544433332  334445554445442221     3456


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING  139 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  139 (293)
                      ++..+...|++-+|+++.++....+...-..++++....+|...-..+|+-..+.+
T Consensus        95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            77889999999999999998766666666778888888888777666666665543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.65  E-value=0.087  Score=36.86  Aligned_cols=84  Identities=11%  Similarity=0.068  Sum_probs=48.0

Q ss_pred             HHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHH
Q 036775           48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ  127 (293)
Q Consensus        48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  127 (293)
                      ++..+.+.+.......+++.+.. .+...+....+.++..|++.++.++..++++..   +..-...++..|.+.|.+++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHH
Confidence            44555666666666666776665 344455666677777777776666666666522   22333445555566666666


Q ss_pred             HHHHHHHH
Q 036775          128 ALQLFSLM  135 (293)
Q Consensus       128 a~~~~~~m  135 (293)
                      |.-++.++
T Consensus        89 a~~Ly~~~   96 (143)
T PF00637_consen   89 AVYLYSKL   96 (143)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHc
Confidence            66655554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.65  E-value=3.9  Score=31.83  Aligned_cols=221  Identities=14%  Similarity=0.175  Sum_probs=109.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc---c-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH----H
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKT---K-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG----N   82 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~---~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~   82 (293)
                      .+|....+.|++++..+.|.++..-   . ....+..+.++++..-+...+.+...++++.-.....-..+...|    +
T Consensus        70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt  149 (440)
T KOG1464|consen   70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT  149 (440)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence            3455666677777777766666431   0 012334455566655555555555555544433311112222222    4


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC---------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK---------------DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVT  146 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~  146 (293)
                      -|...|...+++.+..+++.++.+.               =...|..=|+.|...++-.....+|++..... ..|-+. 
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-  228 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-  228 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-
Confidence            5666677777777777777666531               12456666777777777777777777654321 122222 


Q ss_pred             HHHHHHHH-----hcCCChhHHHHHHHHhhhhcC--CCcchh---HHHHHHHHHHhcCC--h--HHHHHHHHhCCCCchH
Q 036775          147 FIALISAC-----SHGGLVDQGLILFKAMSTVYE--IVPQTQ---HYACVVDMYGRAGL--L--EEAEAFIREMPIEAEW  212 (293)
Q Consensus       147 ~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~g~--~--~~a~~~~~~~~~~~~~  212 (293)
                      ...+|+-|     .+.|++++|..-|-+.-....  -.|...   -|..|..++.+.|-  +  .+|.    -.+..|..
T Consensus       229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEI  304 (440)
T KOG1464|consen  229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEI  304 (440)
T ss_pred             HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHH
Confidence            22333333     355677766543333222121  122222   24445555555441  1  1110    01234555


Q ss_pred             hHHHHHHHHHHhcCChhhchHHHHH
Q 036775          213 SVWGALLNACRIHRNDEMFDPIRQE  237 (293)
Q Consensus       213 ~~~~~l~~~~~~~~~~~~a~~~~~~  237 (293)
                      .....++.+|. .++..+.+++++.
T Consensus       305 lAMTnlv~aYQ-~NdI~eFE~Il~~  328 (440)
T KOG1464|consen  305 LAMTNLVAAYQ-NNDIIEFERILKS  328 (440)
T ss_pred             HHHHHHHHHHh-cccHHHHHHHHHh
Confidence            66677777773 3455555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.46  E-value=0.32  Score=25.25  Aligned_cols=29  Identities=17%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          246 VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       246 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ..+++.|...|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35788999999999999999999998755

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.45  E-value=0.45  Score=24.67  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEK   34 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~   34 (293)
                      ..+++.|...|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            45778888888888888888888887754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.43  E-value=2.9  Score=29.75  Aligned_cols=17  Identities=24%  Similarity=0.239  Sum_probs=7.7

Q ss_pred             HhcCCHHHHHHHHHHHH
Q 036775          120 AMNGCGRQALQLFSLMI  136 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~  136 (293)
                      ...|+|.+|..+|+++.
T Consensus        55 i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   55 IVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHhCCHHHHHHHHHHHh
Confidence            33444444444444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.28  E-value=2.2  Score=31.59  Aligned_cols=76  Identities=12%  Similarity=0.025  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc--CCCcchhHHHHHHHHHHhcCChHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVPQTQHYACVVDMYGRAGLLEEAE  200 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~  200 (293)
                      .-+.|...|-++...+.--++.....+...| ...+.+++.+++....+..  +-.+|+..+..|+..|.+.|+++.|.
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3367777777777776554544444444444 4667888888877776522  22466777888888888888887774

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.91  E-value=0.53  Score=37.65  Aligned_cols=93  Identities=6%  Similarity=-0.049  Sum_probs=54.6

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCCh
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRND  228 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~  228 (293)
                      ..-|.+.|.+++|+..|.....  -.+-|..++..-..+|.+..++..|+.--... .+. .-...|..-..+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            3456778888888888877664  22337777777777888887777665433332 111 1122344444444455666


Q ss_pred             hhchHHHHHHHhhcCCc
Q 036775          229 EMFDPIRQELVNKKGVS  245 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~  245 (293)
                      .+|..-++...+..|.+
T Consensus       182 ~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHhHHHHHhhCccc
Confidence            66666666666655543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.84  E-value=4.6  Score=35.21  Aligned_cols=123  Identities=20%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             HcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHH
Q 036775           90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA  169 (293)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  169 (293)
                      -.|+++.|..++..+.++   .-+.++.-+.+.|-.++|+++-         +|...-   .....+.|+++.|.++..+
T Consensus       598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e  662 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVE  662 (794)
T ss_pred             hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHh
Confidence            345556555555444422   2334444455555555554431         222111   1122345666666555444


Q ss_pred             hhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ..       +..-|..|.++....|++..|.+.|.+...      |..|+-.+...|+.+....+-....+
T Consensus       663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~~~l~~la~~~~~  720 (794)
T KOG0276|consen  663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNAEGLAVLASLAKK  720 (794)
T ss_pred             hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence            32       233466666666666666666666655421      34444444455554444433333333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.66  E-value=3.6  Score=29.26  Aligned_cols=49  Identities=18%  Similarity=0.133  Sum_probs=25.4

Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHHHHHHhcCChHHHHHHHHhC
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+.++.+++..++..+.-   ..|..... ..-...+...|+|.+|.++|+++
T Consensus        21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            355566666666666653   23332211 11223355566666666666666

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.60  E-value=8.6  Score=33.45  Aligned_cols=183  Identities=10%  Similarity=0.041  Sum_probs=123.6

Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      +++..+|..-+..-.+.|+.+.+.-+|++..-|   -...|-..+.-....|+.+-|..++....+--++-.+.+-..-.
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a  373 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA  373 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence            345566788888888999999999999998866   33456556665666699998888887766554432332222222


Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCchHhH----HHHHHHH-
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAE---AFIREM-PIEAEWSV----WGALLNA-  221 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~-~~~~~~~~----~~~l~~~-  221 (293)
                      ...-..|+.+.|..+++.+.+  .+ |+. ..-..-+....+.|+.+.+.   .++... ...-+...    +....+- 
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~--e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIES--EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR  450 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHh--hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence            223456799999999999987  44 544 33344556677788888887   444444 11112211    2222222 


Q ss_pred             HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775          222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  260 (293)
                      +...++.+.|..++.++.+..|++...|..++......+
T Consensus       451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            567889999999999999999999999998888877655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.59  E-value=11  Score=34.61  Aligned_cols=197  Identities=13%  Similarity=0.064  Sum_probs=112.4

Q ss_pred             HHcCCHHHHHHHHHHhhh----CCc-------ccHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCcHhHHHHHHH
Q 036775           89 VKCGDVGIAIQVFNMLAY----KDM-------ISWSTVIS-GLAMNGCGRQALQLFSLMIIN----GVFPDDVTFIALIS  152 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~  152 (293)
                      ....++.+|..++.+...    ++.       ..|+.+-. .....|++++|.++-+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            345788999988887763    221       14555433 334578899999888877653    23345566677777


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhH---HHHH--HHHHHhcCChH--HHHHHHHhC-----CCC----chHhHHH
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQH---YACV--VDMYGRAGLLE--EAEAFIREM-----PIE----AEWSVWG  216 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~--~a~~~~~~~-----~~~----~~~~~~~  216 (293)
                      +..-.|++++|..+..+..+. .-.-+...   |..+  ...+...|+..  +.+..|...     +..    +-..++.
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            788889999999888777652 11223322   2222  23455667332  223333322     111    2233455


Q ss_pred             HHHHHHHh-cCChhhchHHHHHHHhhcCCch-h--hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775          217 ALLNACRI-HRNDEMFDPIRQELVNKKGVSV-G--TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI  286 (293)
Q Consensus       217 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  286 (293)
                      .++.++.+ .+...++..-++......+... .  .+..|+......|+.++|...++++......+....+|.
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            55555444 2222233333322222222211 1  234678888899999999999999988766666665554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.38  E-value=5.2  Score=30.50  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=31.4

Q ss_pred             HHHHHHhc-CChHHHHHHHHhC-----CCCchHhHHHHHHHH---HHhcCChhhchHHHHHHHhhc
Q 036775          186 VVDMYGRA-GLLEEAEAFIREM-----PIEAEWSVWGALLNA---CRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       186 l~~~~~~~-g~~~~a~~~~~~~-----~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      +...|... .++++|+..|+..     +...+...--.++.+   -.+.+++..|..+|+++....
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444433 4556666666655     222222222333333   367788888888888777654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.16  E-value=3.8  Score=34.70  Aligned_cols=127  Identities=10%  Similarity=0.045  Sum_probs=68.5

Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCchHhHHHHHHHHHHhcCChhhchH
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDP  233 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~  233 (293)
                      ..|++-.|-+-+....+...-.|+.  ...........|.++.+...+... + +.....+...+++.....|+.+.|..
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            4455555444333333212223333  333334456667777777777666 1 22334456666777777777777777


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775          234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI  286 (293)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  286 (293)
                      .-+.+....--++.....-.......|-++++...|+++..  +.|.....|+
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~--~~~~~~~g~v  429 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL--LNPETQSGWV  429 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc--cCChhcccce
Confidence            77777665544444444333344455667777777776654  3344333443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.87  E-value=12  Score=33.63  Aligned_cols=89  Identities=11%  Similarity=0.032  Sum_probs=41.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC-   91 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-   91 (293)
                      ...+.-.|+++.|++.+-.-  .+ .+.+..++...+..+.-.+-.+...   ..+.....-.|...-+..||..|.+. 
T Consensus       265 f~~LlLtgqFE~AI~~L~~~--~~-~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F  338 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYRN--EF-NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF  338 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred             HHHHHHHhhHHHHHHHHHhh--cc-CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence            45566788888888888772  22 5677777777776655433322222   11111011111124466777777764 


Q ss_pred             --CCHHHHHHHHHHhhhC
Q 036775           92 --GDVGIAIQVFNMLAYK  107 (293)
Q Consensus        92 --~~~~~A~~~~~~~~~~  107 (293)
                        .+..+|.+.|--+...
T Consensus       339 ~~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  339 EITDPREALQYLYLICLF  356 (613)
T ss_dssp             TTT-HHHHHHHHHGGGGS
T ss_pred             hccCHHHHHHHHHHHHHc
Confidence              4667777777655543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.80  E-value=7.5  Score=34.00  Aligned_cols=108  Identities=15%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             HHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL  166 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  166 (293)
                      ...+.|+++.|.++..+.  .+..-|..|.++....+++..|.+.|.+..+         |..|+-.+...|+.+....+
T Consensus       646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l  714 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL  714 (794)
T ss_pred             hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence            344667777777766443  3556688888888888888888888877643         34566666677777665555


Q ss_pred             HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchH
Q 036775          167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW  212 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  212 (293)
                      -....+ .|.      .|.-.-+|...|+++++.+++.+-+.-|..
T Consensus       715 a~~~~~-~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r~peA  753 (794)
T KOG0276|consen  715 ASLAKK-QGK------NNLAFLAYFLSGDYEECLELLISTQRLPEA  753 (794)
T ss_pred             HHHHHh-hcc------cchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence            555554 332      223344667788888888888777544443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.70  E-value=0.41  Score=22.13  Aligned_cols=24  Identities=4%  Similarity=0.091  Sum_probs=18.2

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRD  270 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~  270 (293)
                      .....+..++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667788888888888888775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=90.56  E-value=4.4  Score=28.32  Aligned_cols=88  Identities=18%  Similarity=0.242  Sum_probs=60.4

Q ss_pred             cCCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHhhh---------CCcccHHHHHHHHHhcCC-HHHHHHHHHHHHhCC
Q 036775           72 YDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAY---------KDMISWSTVISGLAMNGC-GRQALQLFSLMIING  139 (293)
Q Consensus        72 ~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g  139 (293)
                      .+..++..+  .+.++.-....+.+.....+++.+..         .+-..|..++.+.+.... --.+..+|+-|++.+
T Consensus        31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~  110 (145)
T PF13762_consen   31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND  110 (145)
T ss_pred             cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence            345554433  36777777777777777777776642         255678888888866555 445677888888777


Q ss_pred             CCCcHhHHHHHHHHHhcCCC
Q 036775          140 VFPDDVTFIALISACSHGGL  159 (293)
Q Consensus       140 ~~p~~~~~~~ll~~~~~~~~  159 (293)
                      .+++..-|..++.++.+...
T Consensus       111 ~~~t~~dy~~li~~~l~g~~  130 (145)
T PF13762_consen  111 IEFTPSDYSCLIKAALRGYF  130 (145)
T ss_pred             CCCCHHHHHHHHHHHHcCCC
Confidence            88888888888887766533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.52  E-value=0.69  Score=22.74  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEK   34 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~   34 (293)
                      .+|..+-..|...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3577778888889999999999888776

...

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=90.43  E-value=2.5  Score=28.54  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 036775          125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR  204 (293)
Q Consensus       125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  204 (293)
                      --+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+  +.+....|-.++         ++..-+++
T Consensus        65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~  133 (149)
T KOG4077|consen   65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLN  133 (149)
T ss_pred             HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHH
Confidence            3456677777888889999999999999999999999999999999863  334444566554         45556666


Q ss_pred             hCCC
Q 036775          205 EMPI  208 (293)
Q Consensus       205 ~~~~  208 (293)
                      ++|+
T Consensus       134 ELGI  137 (149)
T KOG4077|consen  134 ELGI  137 (149)
T ss_pred             HhCC
Confidence            6653

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.42  E-value=11  Score=32.47  Aligned_cols=177  Identities=7%  Similarity=-0.003  Sum_probs=113.0

Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      +.|.....+++..+..+..+.-.+.+-.+|.+-  +-..|..++++|..+ ..+.-..+++++.+..+. |++.-..|..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            445555567777887777777777777777653  556778888888887 557777888888776553 4444444444


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcc------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHHHHHHH
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQ------TQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNAC  222 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~  222 (293)
                      .|-+ ++.+.+..+|.....  .+-|.      ...|..+...-  ..+.+...++...+    +...-...+.-+-.-|
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            4444 777888888877764  22231      12444443211  34566666666555    3333344555566668


Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ....++.++.+++..+.+.+..+...-..++.-+..
T Consensus       216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            888888888888888888776676666666655544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.68  E-value=12  Score=31.98  Aligned_cols=243  Identities=11%  Similarity=0.034  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC------cchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHcCCHH
Q 036775           23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS------ALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVG   95 (293)
Q Consensus        23 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~   95 (293)
                      +....+|++..+   .-|+...|...|..|...-      .+.....+++...+..+..+. ...|..+.-.++......
T Consensus       299 s~~~~v~ee~v~---~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r  375 (568)
T KOG2396|consen  299 SRCCAVYEEAVK---TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR  375 (568)
T ss_pred             HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence            345567777766   5677888888787765432      344445566666554444443 345666666666665543


Q ss_pred             -HHHHHHHHhhhCCcccHHHHHHHHHhcC-CHHH-HHHHHHHHHhCCCCCcHhHHHHHH-HHHhcCCChhHHHHHHHHhh
Q 036775           96 -IAIQVFNMLAYKDMISWSTVISGLAMNG-CGRQ-ALQLFSLMIINGVFPDDVTFIALI-SACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus        96 -~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~-a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~  171 (293)
                       -|..+....-..+...|-.-++...+.. +++- -.++|......-..+....|++.. ....+....+..   +....
T Consensus       376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~I---i~a~~  452 (568)
T KOG2396|consen  376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLI---ISALL  452 (568)
T ss_pred             HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHH---HHHHH
Confidence             3444444555556666666666555332 2222 223334444332333334444444 001111112222   22333


Q ss_pred             hhcCCCcchhHH-HHHHHHHHhcCChHHHHHHHHhCC-C-CchHhHHHHHHHHH--HhcCChhhchHHHHHHHhhcCCch
Q 036775          172 TVYEIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREMP-I-EAEWSVWGALLNAC--RIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       172 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                      .  -..|+..++ +.+++-+.+.|-..+|..++..+. . .|+...|..++..-  ...-+...+..+++.+......++
T Consensus       453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~  530 (568)
T KOG2396|consen  453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS  530 (568)
T ss_pred             H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence            2  223555444 568888889999999999999882 2 34666777777662  222337788888988888877888


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..|...+.--...|+.+.+-.++-+..
T Consensus       531 ~lw~~y~~~e~~~g~~en~~~~~~ra~  557 (568)
T KOG2396|consen  531 DLWMDYMKEELPLGRPENCGQIYWRAM  557 (568)
T ss_pred             HHHHHHHHhhccCCCcccccHHHHHHH
Confidence            888888888788999888888765543

>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []

Probab=89.35  E-value=10  Score=30.65  Aligned_cols=77  Identities=10%  Similarity=-0.001  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhCCC----CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775          126 RQALQLFSLMIINGV----FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA  201 (293)
Q Consensus       126 ~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  201 (293)
                      +.|.+.|+.....+.    ..+......++....+.|+.+.-..+++....    ..+...-..++.+++...+.+...+
T Consensus       147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~  222 (324)
T PF11838_consen  147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKR  222 (324)
T ss_dssp             HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred             HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHH
Confidence            445555555554311    22333344444444555554444444444332    1233444455555555555555555


Q ss_pred             HHHhC
Q 036775          202 FIREM  206 (293)
Q Consensus       202 ~~~~~  206 (293)
                      +++..
T Consensus       223 ~l~~~  227 (324)
T PF11838_consen  223 LLDLL  227 (324)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.33  E-value=3.2  Score=31.24  Aligned_cols=57  Identities=16%  Similarity=0.018  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775          113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM  170 (293)
Q Consensus       113 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  170 (293)
                      +.-++.+.+.+..++|+....+=.+.++. |..+-..++..+|-.|++++|..-++-.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            33445555556666666655554444322 4444445555556666666655544443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.31  E-value=13  Score=31.74  Aligned_cols=90  Identities=13%  Similarity=0.012  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA  193 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (293)
                      .....+...|+++.+.+.+...... +.....+..++++...+.|+++.|..+-+.|.. ..+ -+.++...-...--..
T Consensus       328 l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l  404 (831)
T PRK15180        328 LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS-NEI-EDEEVLTVAAGSADAL  404 (831)
T ss_pred             HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc-ccc-CChhheeeecccHHHH
Confidence            3334455667777777777665433 333556777777777777777777777777765 232 2222222222223345


Q ss_pred             CChHHHHHHHHhC
Q 036775          194 GLLEEAEAFIREM  206 (293)
Q Consensus       194 g~~~~a~~~~~~~  206 (293)
                      |-++++.-.|++.
T Consensus       405 ~~~d~~~~~wk~~  417 (831)
T PRK15180        405 QLFDKSYHYWKRV  417 (831)
T ss_pred             hHHHHHHHHHHHH
Confidence            6677777777766

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.30  E-value=4.3  Score=30.09  Aligned_cols=74  Identities=12%  Similarity=-0.107  Sum_probs=49.8

Q ss_pred             cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-------CCcccHHHHHHHHHhcCCH
Q 036775           53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------KDMISWSTVISGLAMNGCG  125 (293)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~  125 (293)
                      .+.|+ +.|.+.|-++.. .+.-.++.....|...|. ..+.+++..++.+..+       .|+..+.+|+..+.+.|+.
T Consensus       118 sr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            34444 456666666655 444455666566665555 5678888888877653       3677888888888888888


Q ss_pred             HHHH
Q 036775          126 RQAL  129 (293)
Q Consensus       126 ~~a~  129 (293)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8774

>PRK09687 putative lyase; Provisional

Probab=89.15  E-value=9.8  Score=30.20  Aligned_cols=218  Identities=8%  Similarity=-0.006  Sum_probs=127.4

Q ss_pred             CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH----HHHHHHHHHh--hhCCcccH
Q 036775           39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV----GIAIQVFNML--AYKDMISW  112 (293)
Q Consensus        39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~  112 (293)
                      .+|.......+.++...|..+....+ ..+.+    .++...-...+.+++..|+.    +++...+..+  .+++..+-
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~l-~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR  108 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRLA-IELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR  108 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHHH-HHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence            35555666666667666653333333 33322    34556666777777877763    4677777766  34555566


Q ss_pred             HHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          113 STVISGLAMNGCG-----RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       113 ~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      ...+.+++..+..     ..+.+.+.....   .++..+-...+.++.+.++ +.+...+-.+.+    .++..+-..-+
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~  180 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHH
Confidence            6666666655421     233444433332   2355566677777777776 456666666654    24444555555


Q ss_pred             HHHHhcC-ChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775          188 DMYGRAG-LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       188 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      .++.+.+ ..+.+...+..+-..++...-...+.++.+.|+......+.+.+.. .  +  .....+.++...|.. +|.
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~--~--~~~~a~~ALg~ig~~-~a~  254 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK-G--T--VGDLIIEAAGELGDK-TLL  254 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcC-C--c--hHHHHHHHHHhcCCH-hHH
Confidence            5665543 2445666665553356666677777778788776555555555433 1  1  345677888888885 688


Q ss_pred             HHHHHHHHc
Q 036775          267 KIRDEIRRM  275 (293)
Q Consensus       267 ~~~~~m~~~  275 (293)
                      ..+..+.+.
T Consensus       255 p~L~~l~~~  263 (280)
T PRK09687        255 PVLDTLLYK  263 (280)
T ss_pred             HHHHHHHhh
Confidence            888877763

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.90  E-value=0.87  Score=24.40  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          251 LMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       251 ~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      .|..+|...|+.+.|.++++++...|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            46788999999999999999888644

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.87  E-value=1.3  Score=21.69  Aligned_cols=28  Identities=7%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          247 GTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+|..+...|...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3577788889999999999999988765

...

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.59  E-value=22  Score=33.55  Aligned_cols=256  Identities=8%  Similarity=0.037  Sum_probs=135.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH-------HHHHhcccCc---chHHHHHHHHHHhhcCCCCchhHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN-------VLSACSSISA---LSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-------ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      +=+++...+.++.|+..|.++..+  .+--...|-+       ++.-....|+   +++|..-|+.+   ++-+.-+.-|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  555 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL---HGGVGAPLEY  555 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCCchHH
Confidence            346777788889999988888665  2222233332       2222333444   45555555555   4444444555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC-------------------------CcccHHHHHHHHHh---cCCHHHHHHHHH
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK-------------------------DMISWSTVISGLAM---NGCGRQALQLFS  133 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------------~~~~~~~li~~~~~---~~~~~~a~~~~~  133 (293)
                      ..-...|.+.|++++-.+.+.-..++                         ...+|--++-+...   .-...+-..+|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (932)
T PRK13184        556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE  635 (932)
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            55566788888888877777655432                         11122222222211   111222233333


Q ss_pred             HHHhCC------------------------------------------CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          134 LMIING------------------------------------------VFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       134 ~m~~~g------------------------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      .+...-                                          ..+|-.+........+..|.++-+.+..+.+.
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (932)
T PRK13184        636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILA  715 (932)
T ss_pred             HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            332210                                          01233333344444577888888877777666


Q ss_pred             hhc---CCCcch--------hHHHHHHHHHHhcCChHHHHHHHHhCCCCchHh--HHHHHHHHHHhcCChhhchHHHHHH
Q 036775          172 TVY---EIVPQT--------QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       172 ~~~---~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      +..   ..+-+.        ..|-.=+.++.....++++...+....  |...  .+..++.-+...++.+....+.+.+
T Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (932)
T PRK13184        716 EVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLILYAFDLFAIQALLDEEGESIIQLLQLI  793 (932)
T ss_pred             HHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            411   111111        112222445555566777776555553  3333  3444444456667777777777666


Q ss_pred             HhhcCCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          239 VNKKGVSV---GTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       239 ~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .....+..   ......|.+|.-..++++|-++++....
T Consensus       794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (932)
T PRK13184        794 YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL  832 (932)
T ss_pred             HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence            66553332   2345567888888999999999876433

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=88.51  E-value=10  Score=29.84  Aligned_cols=83  Identities=7%  Similarity=-0.133  Sum_probs=42.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHhh-hC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-----
Q 036775           85 INMYVKCGDVGIAIQVFNMLA-YK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----  155 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-----  155 (293)
                      |.+++..+++.+++.+.-+.- .|   ...+...-|-.|.+.+.+..+.++-.......-.-+...|.+++..|.     
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            556666666666655443221 11   333444455556666666666666665554322223334555555443     


Q ss_pred             cCCChhHHHHHH
Q 036775          156 HGGLVDQGLILF  167 (293)
Q Consensus       156 ~~~~~~~a~~~~  167 (293)
                      =.|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence            346666666555

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.10  E-value=8.8  Score=28.37  Aligned_cols=88  Identities=6%  Similarity=-0.104  Sum_probs=57.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC-Cccc-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK-DMIS-----WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH  156 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  156 (293)
                      .+...+..++++++|+..++..... .-..     --.|.+.....|.+|+|+.+++.....+..  ......--..+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence            3456677788888888888776632 1122     223455667788888888888876654332  2223334456778


Q ss_pred             CCChhHHHHHHHHhhh
Q 036775          157 GGLVDQGLILFKAMST  172 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~  172 (293)
                      .|+-++|..-|+...+
T Consensus       172 kg~k~~Ar~ay~kAl~  187 (207)
T COG2976         172 KGDKQEARAAYEKALE  187 (207)
T ss_pred             cCchHHHHHHHHHHHH
Confidence            8888888888888876

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=88.00  E-value=8.9  Score=30.10  Aligned_cols=87  Identities=14%  Similarity=0.014  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHH-HhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHH
Q 036775           44 TLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISG  118 (293)
Q Consensus        44 ~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~  118 (293)
                      ....=|.+++..++|.++....-+- ..-..+||.+  ...-|-.|++.++...+.++-..-.+    .+...|..++..
T Consensus        85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL  162 (309)
T PF07163_consen   85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL  162 (309)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence            3444567788888888876543333 2212334433  34556668888888777766655442    245557777666


Q ss_pred             HHh-----cCCHHHHHHHH
Q 036775          119 LAM-----NGCGRQALQLF  132 (293)
Q Consensus       119 ~~~-----~~~~~~a~~~~  132 (293)
                      |..     .|.+++|+++.
T Consensus       163 yLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  163 YLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHhccccHHHHHHHH
Confidence            654     68888888877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.52  E-value=3.7  Score=27.81  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775           62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      .+-+..... ..+-|++.+....+.++-+.+|+..|.++|+-++.
T Consensus        69 rkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   69 RKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334444444 56666666666667777777777777777766653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.04  E-value=4.2  Score=30.20  Aligned_cols=101  Identities=6%  Similarity=-0.055  Sum_probs=70.3

Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcch-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhc
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQT-----QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIH  225 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~  225 (293)
                      -+.+.|++++|..-|.....  -+++..     ..|..-..++.+.+.++.|+.--... .+.|+.. ....-..+|.+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            36789999999999999886  344432     34555566788889998887765554 5555432 222234458888


Q ss_pred             CChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775          226 RNDEMFDPIRQELVNKKGVSVGTFALMSNT  255 (293)
Q Consensus       226 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  255 (293)
                      ..++.|..-|+++.+..|.....-...++.
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999888766555444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.47  E-value=3  Score=22.33  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcc
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKTK   36 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~   36 (293)
                      .|..+|...|+.+.|.+++++....|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            35678888888888888888887654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.29  E-value=9.4  Score=26.83  Aligned_cols=50  Identities=10%  Similarity=-0.075  Sum_probs=24.0

Q ss_pred             cCcchHHHHHHHHHHhhcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775           55 ISALSFGQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYK  107 (293)
Q Consensus        55 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~  107 (293)
                      .++.+.+..+++.+.-   +.|+..- -..-.-.+...|++++|.++|+++.+.
T Consensus        23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            4555555555555543   2222211 122223345556666666666666544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.12  E-value=1.5  Score=21.12  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=17.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKT   35 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~   35 (293)
                      .+..++.+.|++++|.+.|+++.+.
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455666777888888888877664

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.94  E-value=12  Score=27.96  Aligned_cols=85  Identities=12%  Similarity=0.029  Sum_probs=38.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCc----HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhc
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPD----DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRA  193 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  193 (293)
                      +..+|++++|..-|.+....-....    ...|..-..++.+.+.++.|+.--...++ .  .|+ ......-..+|.+.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l--~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-L--NPTYEKALERRAEAYEKM  181 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-c--CchhHHHHHHHHHHHHhh
Confidence            3445555555555555544321111    12233333344555555555554444443 1  121 12222233455555


Q ss_pred             CChHHHHHHHHhC
Q 036775          194 GLLEEAEAFIREM  206 (293)
Q Consensus       194 g~~~~a~~~~~~~  206 (293)
                      .++++|+.-|+.+
T Consensus       182 ek~eealeDyKki  194 (271)
T KOG4234|consen  182 EKYEEALEDYKKI  194 (271)
T ss_pred             hhHHHHHHHHHHH
Confidence            6666666655555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.91  E-value=3.2  Score=25.48  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=30.0

Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHHHH
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAEAF  202 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~  202 (293)
                      ..++.++|+..|+...+...-+++. .++..++.+|+..|++++++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777777777776632223332 3566677777777777776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=85.83  E-value=17  Score=29.22  Aligned_cols=46  Identities=11%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHhCCCCCcHhHHHHHHHHHhc--CC----ChhHHHHHHHHhhh
Q 036775          127 QALQLFSLMIINGVFPDDVTFIALISACSH--GG----LVDQGLILFKAMST  172 (293)
Q Consensus       127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~  172 (293)
                      +.+.+++.|++.|.+-+..+|.+.......  ..    ....+..+|+.|++
T Consensus        80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk  131 (297)
T PF13170_consen   80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK  131 (297)
T ss_pred             HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            344555556666665555555443322222  11    13345556666655

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.76  E-value=4.3  Score=30.08  Aligned_cols=51  Identities=12%  Similarity=-0.009  Sum_probs=31.2

Q ss_pred             cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ...+.+......+...+.....|+..+|..++..+...|+.++|.++.+++
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~  170 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA  170 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444444444444444443345677777777777777777777777777666

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.48  E-value=6.3  Score=29.19  Aligned_cols=31  Identities=19%  Similarity=0.069  Sum_probs=17.3

Q ss_pred             CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775          107 KDMISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus       107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      |+..+|..++.++...|+.++|.+...++..
T Consensus       142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~  172 (193)
T PF11846_consen  142 PDPNVYQRYALALALLGDPEEARQWLARARR  172 (193)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3555555555555555555555555555544

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>smart00028 TPR Tetratricopeptide repeats

Probab=85.35  E-value=2.2  Score=19.67  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEK   34 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~   34 (293)
                      ..|..+...+...|+++.|...|....+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3566777788888888888888887765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.32  E-value=26  Score=31.03  Aligned_cols=152  Identities=13%  Similarity=0.036  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHH-hcccCcchHHHHHHHHHHhh---cCCCCchhHHHHHHHHHHHcC-----
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSA-CSSISALSFGQYVHSYISTR---YDLSVSNLVGNAVINMYVKCG-----   92 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-----   92 (293)
                      ...|.+.++...+.|...+-...=...... .....+.+.|...++.+.+.   .-..-.......+..+|.+..     
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            467888888887776333332222223333 55777889998888887551   011113334566777777743     


Q ss_pred             CHHHHHHHHHHhhhC-CcccHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh--cCCChhHHHHH
Q 036775           93 DVGIAIQVFNMLAYK-DMISWSTVISGLAMN---GCGRQALQLFSLMIINGVFPDDVTFIALISACS--HGGLVDQGLIL  166 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~  166 (293)
                      +.+.|..++.+.-+. +...--.+...+...   .+...|.++|....+.|.. ...-+..++....  -..+.+.|..+
T Consensus       308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            567799988877654 333333333333332   3678999999999888864 3333333333222  34577888888


Q ss_pred             HHHhhhhcC
Q 036775          167 FKAMSTVYE  175 (293)
Q Consensus       167 ~~~~~~~~~  175 (293)
                      +++..+ .|
T Consensus       387 ~k~aA~-~g  394 (552)
T KOG1550|consen  387 YKKAAE-KG  394 (552)
T ss_pred             HHHHHH-cc
Confidence            888887 45

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.29  E-value=26  Score=31.02  Aligned_cols=179  Identities=11%  Similarity=-0.057  Sum_probs=105.3

Q ss_pred             chHHHHHHHHHHhhcCCCCchhHHHHHHHH-HHHcCCHHHHHHHHHHhhh-------C-CcccHHHHHHHHHhcC-----
Q 036775           58 LSFGQYVHSYISTRYDLSVSNLVGNAVINM-YVKCGDVGIAIQVFNMLAY-------K-DMISWSTVISGLAMNG-----  123 (293)
Q Consensus        58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~-~~~~~~~li~~~~~~~-----  123 (293)
                      ...+.+.++...+.....+-...-.....+ +....+.+.|..+|+.+.+       . ......-+..+|.+..     
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            456788888877722222222222333334 5566799999999998865       2 4556777888887754     


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH----hcCChHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG----RAGLLEE  198 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~  198 (293)
                      +.+.|+.++....+.|.+ +.......+.-... ..+...|.++|..... .|. +...  -.+..+|.    ...+.+.
T Consensus       308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~-~~A~--~~la~~y~~G~gv~r~~~~  382 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGH-ILAI--YRLALCYELGLGVERNLEL  382 (552)
T ss_pred             cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCC-hHHH--HHHHHHHHhCCCcCCCHHH
Confidence            667799999999888764 65555444443333 3567899999999886 453 3332  22333332    2356788


Q ss_pred             HHHHHHhCC--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          199 AEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       199 a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      |..++++.-  ..|....-...+..+.. +....+...+....+..
T Consensus       383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            888888871  12222222222222333 55555555554444433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.49  E-value=20  Score=28.89  Aligned_cols=96  Identities=9%  Similarity=0.072  Sum_probs=66.7

Q ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775          108 DMISWSTVISGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA  184 (293)
Q Consensus       108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      ...+-..++..-....+++.+...+-+++...   ..|+. +-.+.+..| -.-+.++++.++..=++ +|+-||..+++
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~~c  139 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFTFC  139 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcch-hccccchhhHH
Confidence            34455566666666778888888888776431   22222 122223322 33466788888888887 89999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC
Q 036775          185 CVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+|+.+.+.+++.+|.++.-.|
T Consensus       140 ~l~D~flk~~n~~~aa~vvt~~  161 (418)
T KOG4570|consen  140 LLMDSFLKKENYKDAASVVTEV  161 (418)
T ss_pred             HHHHHHHhcccHHHHHHHHHHH
Confidence            9999999999999988887666

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.25  E-value=19  Score=28.59  Aligned_cols=173  Identities=14%  Similarity=0.041  Sum_probs=105.1

Q ss_pred             CcccHHHHHHHHHh------cC-----CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh-----
Q 036775          108 DMISWSTVISGLAM------NG-----CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-----  171 (293)
Q Consensus       108 ~~~~~~~li~~~~~------~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----  171 (293)
                      ...+|...+.++..      .|     -..+|+++|.-+.+..-+  +.+-..++.++-...+..+|...+....     
T Consensus       121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK  198 (361)
T COG3947         121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK  198 (361)
T ss_pred             chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence            34456666666551      22     146788888887765322  2333445555555555555554433221     


Q ss_pred             --h------------------hcCCCcchhHHHHHHHHHHh-cCChHHHHHHHHhC-C-CCc-------------hHhHH
Q 036775          172 --T------------------VYEIVPQTQHYACVVDMYGR-AGLLEEAEAFIREM-P-IEA-------------EWSVW  215 (293)
Q Consensus       172 --~------------------~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~-~-~~~-------------~~~~~  215 (293)
                        .                  ..+...|..-|-..+....+ ...++++.++.... + .-|             -..+|
T Consensus       199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly  278 (361)
T COG3947         199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY  278 (361)
T ss_pred             HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence              1                  01223345455555544333 34466777666655 1 000             11233


Q ss_pred             HH----HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCCCc
Q 036775          216 GA----LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR-----RMGLKKKTG  282 (293)
Q Consensus       216 ~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~  282 (293)
                      ..    ....|...|.+.+|..+.++....+|.+...+-.|+..+...|+--.+.+-++.+.     +.|+.-+..
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds  354 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS  354 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence            33    34558999999999999999999999999999999999999999777777766653     246665544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.64  E-value=13  Score=26.18  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=8.5

Q ss_pred             HHhcCChHHHHHHHHhC
Q 036775          190 YGRAGLLEEAEAFIREM  206 (293)
Q Consensus       190 ~~~~g~~~~a~~~~~~~  206 (293)
                      +...|++++|.++|++.
T Consensus        54 ~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        54 LIARGNYDEAARILREL   70 (153)
T ss_pred             HHHcCCHHHHHHHHHhh
Confidence            34445555555555554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.96  E-value=11  Score=28.51  Aligned_cols=77  Identities=8%  Similarity=-0.007  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhh-cCCCCchhHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINM   87 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~   87 (293)
                      -+..++.+.+.++..+++....+=.+.  .+.|...-..++..++-.|++++|..-++-..+. ....+...+|..+|.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            345566677777777777776665554  2444445556667777777777776655554330 1222334445555543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.94  E-value=4.2  Score=32.86  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYI   68 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~   68 (293)
                      .|.+.|.+++|+..|.....   ..| |++++..-..+|.+...+..|+.-....
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence            46777888888888877666   334 7777777777777777776665544443

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=82.84  E-value=5.9  Score=21.64  Aligned_cols=34  Identities=9%  Similarity=0.015  Sum_probs=22.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      ..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus        12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~   45 (48)
T PF11848_consen   12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR   45 (48)
T ss_pred             HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence            3456666677777777777777777666666554

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.46  E-value=4.9  Score=24.67  Aligned_cols=45  Identities=7%  Similarity=0.006  Sum_probs=20.5

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchH-HHHHHHHHHhcccCcchHHH
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGQ   62 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~   62 (293)
                      ...+.++|+..|....+.-.-+|+. .++..++.+++..|.+.+++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L   63 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML   63 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555554432112221 13444455555555554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.30  E-value=26  Score=28.63  Aligned_cols=187  Identities=11%  Similarity=0.024  Sum_probs=90.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC---CchhHHHHHHHHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS---VSNLVGNAVINMY   88 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~   88 (293)
                      ...+.-+.|+|+...+.......   ..++...+..+...  ..++.+++....+.+.....-.   .....|.......
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l   78 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL   78 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            34667778888885555554433   23444555544444  7777888777777766521110   1112222222222


Q ss_pred             HHc---CCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCH---HHHHHHHHHHHh--CCCCCcHhHHHHHHHHH
Q 036775           89 VKC---GDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCG---RQALQLFSLMII--NGVFPDDVTFIALISAC  154 (293)
Q Consensus        89 ~~~---~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~  154 (293)
                      .+.   .+++++.++.......      =...|..-+...  ..++   +..+.+=..+..  ........++..+...+
T Consensus        79 ~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a  156 (352)
T PF02259_consen   79 VKLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA  156 (352)
T ss_pred             HHHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            222   3334444433211100      001122111111  1111   111111111111  11233456777888888


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCc---chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVP---QTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+.|.++.|...+..+.. .+...   .+.+...-.+.+...|+..+|+..++..
T Consensus       157 Rk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888888887765 22111   2334445566677778877877776554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=82.26  E-value=18  Score=26.76  Aligned_cols=89  Identities=11%  Similarity=0.022  Sum_probs=45.4

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-----CCCchHhHHHHHHH-HHHhcCC--hhhchHHHHHHHhhcCCchh-------hH-
Q 036775          186 VVDMYGRAGLLEEAEAFIREM-----PIEAEWSVWGALLN-ACRIHRN--DEMFDPIRQELVNKKGVSVG-------TF-  249 (293)
Q Consensus       186 l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~l~~-~~~~~~~--~~~a~~~~~~~~~~~~~~~~-------~~-  249 (293)
                      .+-.....|++++|.+-++++     .++.-...|..+.. +++.++.  +-+|..++.-+.....|++.       .| 
T Consensus        35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi  114 (204)
T COG2178          35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYI  114 (204)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH
Confidence            333445566677777766666     12222223444444 2444333  34555555555554433322       22 


Q ss_pred             ----------HHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          250 ----------ALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       250 ----------~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                                ....--..+.|++++|.+.++-|.+
T Consensus       115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~  149 (204)
T COG2178         115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK  149 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                      1112223467899999998887754

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=81.54  E-value=12  Score=24.31  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=49.0

Q ss_pred             cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775           57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI  136 (293)
Q Consensus        57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  136 (293)
                      ..++|..+-+.+.. .+.. ...+--+-+..+.+.|++++|..+.+...-||...|.+|-.  .+.|..+++..-+.+|.
T Consensus        20 cHqEA~tIAdwL~~-~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        20 CHQEANTIADWLHL-KGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA   95 (115)
T ss_pred             HHHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence            34555555555544 1211 22222333445667777777777777776677777766543  45666666666666666


Q ss_pred             hCCCCCcHhHHH
Q 036775          137 INGVFPDDVTFI  148 (293)
Q Consensus       137 ~~g~~p~~~~~~  148 (293)
                      ..|- |...+|.
T Consensus        96 ~sg~-p~lq~Fa  106 (115)
T TIGR02508        96 ASGD-PRLQTFV  106 (115)
T ss_pred             hCCC-HHHHHHH
Confidence            6553 3444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=81.47  E-value=25  Score=27.91  Aligned_cols=68  Identities=7%  Similarity=0.004  Sum_probs=41.4

Q ss_pred             CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      |-.++..+...++..+++.+++..-.++++......+..-|...|..+++.-...|+..-...+.++-
T Consensus       197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G  264 (292)
T PF13929_consen  197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG  264 (292)
T ss_pred             ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence            34456666666666666666666666666666542234445566666666666666666666665543

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=80.88  E-value=15  Score=25.05  Aligned_cols=42  Identities=10%  Similarity=0.131  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHH
Q 036775           60 FGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFN  102 (293)
Q Consensus        60 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  102 (293)
                      .+.++|..|.. .|+-. -...|..-...+...|++++|.++|+
T Consensus        81 ~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~  123 (126)
T PF08311_consen   81 DPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ  123 (126)
T ss_dssp             HHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555 33332 23334455555555555555555554

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.52  E-value=38  Score=29.40  Aligned_cols=157  Identities=11%  Similarity=0.106  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ...-+++..+..+-.+.-+..+..+|..-|   -+-..|..++.+|... .-+.-..+++++.+ ..+ .|...-..|..
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve-~df-nDvv~~ReLa~  140 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDF-NDVVIGRELAD  140 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcc-hhHHHHHHHHH
Confidence            334455566666666666666666666632   4455556666666655 44455556665555 222 22222233444


Q ss_pred             HHHHcCCHHHHHHHHHHhhhCCc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCcHhHHHHHHHHHhc
Q 036775           87 MYVKCGDVGIAIQVFNMLAYKDM---------ISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSH  156 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~  156 (293)
                      .|-+ ++.+++...|.++..+=+         ..|..+...-  ..+.+..+.+...+.. .|...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4433 666666666665543211         1444444321  2445555555555543 2333344555566666777


Q ss_pred             CCChhHHHHHHHHhhh
Q 036775          157 GGLVDQGLILFKAMST  172 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~  172 (293)
                      ..++++|++++....+
T Consensus       218 ~eN~~eai~Ilk~il~  233 (711)
T COG1747         218 NENWTEAIRILKHILE  233 (711)
T ss_pred             ccCHHHHHHHHHHHhh
Confidence            7788888888876654

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=80.51  E-value=12  Score=23.57  Aligned_cols=14  Identities=21%  Similarity=0.339  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHHHHH
Q 036775          123 GCGRQALQLFSLMI  136 (293)
Q Consensus       123 ~~~~~a~~~~~~m~  136 (293)
                      |+.+.|.++++.+.
T Consensus        50 g~~~~ar~LL~~L~   63 (88)
T cd08819          50 GNESGARELLKRIV   63 (88)
T ss_pred             CcHHHHHHHHHHhc
Confidence            44444444444443

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>PHA02875 ankyrin repeat protein; Provisional

Probab=80.51  E-value=32  Score=28.96  Aligned_cols=141  Identities=11%  Similarity=0.005  Sum_probs=69.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchHHH--HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMY   88 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~   88 (293)
                      +...+..|+.+.+..++    +.| ..|+...  -.+.+..++..|+.+-+.-++    + .|..|+..  .....+...
T Consensus         6 L~~A~~~g~~~iv~~Ll----~~g-~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll----~-~ga~~~~~~~~~~t~L~~A   75 (413)
T PHA02875          6 LCDAILFGELDIARRLL----DIG-INPNFEIYDGISPIKLAMKFRDSEAIKLLM----K-HGAIPDVKYPDIESELHDA   75 (413)
T ss_pred             HHHHHHhCCHHHHHHHH----HCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHH----h-CCCCccccCCCcccHHHHH
Confidence            33445567765554443    455 6666432  334455556667665444333    3 35444332  112345566


Q ss_pred             HHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH--HHHHHHHHhcCCChhH
Q 036775           89 VKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT--FIALISACSHGGLVDQ  162 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~  162 (293)
                      +..|+.+.+..+++.-...    +....+ .+...+..|+.+    +++.+.+.|..|+...  -.+.+...+..|+.+-
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~  150 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG  150 (413)
T ss_pred             HHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            6778888877777654321    111222 333344556653    4444455565554321  1123334445666655


Q ss_pred             HHHHHH
Q 036775          163 GLILFK  168 (293)
Q Consensus       163 a~~~~~  168 (293)
                      +..+++
T Consensus       151 v~~Ll~  156 (413)
T PHA02875        151 IELLID  156 (413)
T ss_pred             HHHHHh
Confidence            544443

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=80.38  E-value=14  Score=24.40  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=21.0

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      .-|..|+..|...|..++|++++.+...
T Consensus        40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   40 GKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            3577777777777888888888777765

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.22  E-value=44  Score=30.04  Aligned_cols=192  Identities=10%  Similarity=0.033  Sum_probs=109.0

Q ss_pred             CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHHH-HcCCHHHHHHHHHHhhhC----Cc-
Q 036775           38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYV-KCGDVGIAIQVFNMLAYK----DM-  109 (293)
Q Consensus        38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-~~~~~~~A~~~~~~~~~~----~~-  109 (293)
                      .+.+...|..+|..         |.+.++.+.+....+|...  ++..+...+. ...+++.|+..+++....    +. 
T Consensus        26 ~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~   96 (608)
T PF10345_consen   26 SEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT   96 (608)
T ss_pred             ChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            34566677777754         4556666664355555443  3455566555 567889999888876532    11 


Q ss_pred             ----ccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHhHHHHH-HHHHhcCCChhHHHHHHHHhhhhcC--CCc
Q 036775          110 ----ISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPDDVTFIAL-ISACSHGGLVDQGLILFKAMSTVYE--IVP  178 (293)
Q Consensus       110 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~  178 (293)
                          .+-..++..+.+.+... |...+++..+.    +..+-...|.-+ +..+...++...|.+.++.+.....  ..|
T Consensus        97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~  175 (608)
T PF10345_consen   97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP  175 (608)
T ss_pred             HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence                12234556666666555 88888776542    222333444444 3333334788888888888776432  233


Q ss_pred             chhHHHHHHHHHH--hcCChHHHHHHHHhC-----C-------CCchHhHHHHHHHH--HHhcCChhhchHHHHHHH
Q 036775          179 QTQHYACVVDMYG--RAGLLEEAEAFIREM-----P-------IEAEWSVWGALLNA--CRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       179 ~~~~~~~l~~~~~--~~g~~~~a~~~~~~~-----~-------~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~  239 (293)
                      ...++..++.+..  +.+..+++.+.++++     +       ..|...+|..++..  +...|+.+.+...++.+.
T Consensus       176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555443  345455666655544     1       12345566666666  456777666666665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.4 bits (147), Expect = 9e-11
 Identities = 23/198 (11%), Positives = 60/198 (30%), Gaps = 10/198 (5%)

Query: 17  AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS-YISTRYDLS 75
             R   ++     ++  +     P E  L  +L       +L   Q     +   +    
Sbjct: 67  EPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ 126

Query: 76  VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-------DMISWSTVISGLAMNGCGRQA 128
              L   A     +    + +A  +  +   +        +  ++ V+ G A  G  ++ 
Sbjct: 127 QQRL--LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184

Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
           + +  ++   G+ PD +++ A +            +       +   +  Q    A ++ 
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

Query: 189 MYGRAGLLEEAEAFIREM 206
              RA +L+         
Sbjct: 245 EEDRATVLKAVHKVKPTF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 102/295 (34%)

Query: 18  ERGFCE-EAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGQYVHSYIST--RYD 73
                  E  S+  +    +  + P E    N     S I+       +   ++T   + 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAES-----IRDGLATWDNWK 348

Query: 74  LSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
                         +V C  +   I+   N+L   +                 R+     
Sbjct: 349 --------------HVNCDKLTTIIESSLNVLEPAEY----------------RKMFDRL 378

Query: 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYG 191
           S      VFP        I            L +++  +      V        VV+   
Sbjct: 379 S------VFPPSA----HIPT--------ILLSLIWFDVI--KSDVMV------VVNKLH 412

Query: 192 RAGLLEE--AEAFIR--------EMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN- 240
           +  L+E+   E+ I         ++ +E E+++  ++++   I +  +  D I   L   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 241 ---------KKGVSVGTFALMSNTFAGAD-RWEDANKIRDEIRRMGLKKKTGCSW 285
                    K         L    F   D R+ +  KIR              +W
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQ-KIR----------HDSTAW 514

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.73
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.7
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.68
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.61
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.48
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.43
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.25
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.22
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.15
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.14
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.98
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.89
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.88
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.86
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.84
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.83
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.62
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.6
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.51
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.41
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.31
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.92
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.85
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.7
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.51
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.3
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.13
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.95
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.9
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.77
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.52
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.26
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.22
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.22
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.11
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.87
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.77
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.64
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.42
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.25
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.22
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.04
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.98
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.72
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	94.71
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.67
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.09
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.77
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.34
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.63
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.07
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.42
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.46
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.91
2p58_C	116	Putative type III secretion protein YSCG; type III	87.74
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.44
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	86.01
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	85.97
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.85
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.43
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.09
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.78
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.77
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	84.69
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	82.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	82.96
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.78
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.03

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=5.7e-35  Score=245.14  Aligned_cols=185  Identities=13%  Similarity=0.163  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc---------chHHHHHHHHHHhhcCCCC
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA---------LSFGQYVHSYISTRYDLSV   76 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~   76 (293)
                      ...++.+|++|++.|++++|+++|++|.+.| ++||..+|+++|.+|++.+.         ++.|.++|++|.. .|+.|
T Consensus        26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~P  103 (501)
T 4g26_A           26 EALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVP  103 (501)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCC
Confidence            3468889999999999999999999999999 99999999999999987654         6789999999999 89999


Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      |..+|++||.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999985    5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA  193 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (293)
                      +|++.|++++|.+++++|++ .+..|+..||+.++..|+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999997 79999999999999998763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6.6e-34  Score=238.72  Aligned_cols=200  Identities=11%  Similarity=0.109  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC--------
Q 036775           23 EEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD--------   93 (293)
Q Consensus        23 ~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------   93 (293)
                      ..+..+.+.+.+.+ ..+. ...++.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.+.        
T Consensus         7 s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~   84 (501)
T 4g26_A            7 SPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNP   84 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred             chHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence            34555666776666 5444 34688899999999999999999999999 8999999999999999998764        


Q ss_pred             -HHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHH
Q 036775           94 -VGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK  168 (293)
Q Consensus        94 -~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  168 (293)
                       +++|.++|++|.+    ||..||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence             7899999999985    69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhc
Q 036775          169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIH  225 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~  225 (293)
                      +|.+ .|+.||..||++||.+|++.|++++|.++|++|   +..|+..||+.++..|...
T Consensus       165 ~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          165 HMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9997 799999999999999999999999999999999   7899999999999998654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.2e-29  Score=216.76  Aligned_cols=274  Identities=8%  Similarity=-0.060  Sum_probs=247.7

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      +|..+|+.++..|.+.|++++|+++|+++.+.+  +.+..++..++.++.+.|++++|..+++.+.+  ..+.+..+++.
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~  378 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLA  378 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHH
Confidence            789999999999999999999999999998864  45778899999999999999999999999987  45678889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      ++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~  457 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNI  457 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCH
Confidence            99999999999999999999875   3577999999999999999999999999998754 3788999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCch--HhHHHHHHHHHHhcCChhhc
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-------PIEAE--WSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ++|.++|+++.+.  .+.+..+|+.++.+|.+.|++++|.++|+++       +..|+  ..+|..+..+|...|++++|
T Consensus       458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  535 (597)
T 2xpi_A          458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA  535 (597)
T ss_dssp             HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999873  3457889999999999999999999999998       44677  67999999999999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI  286 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  286 (293)
                      ...++++.+..|.++.+|..++.+|.+.|++++|.++|+++.+  +.|+....+.
T Consensus       536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~  588 (597)
T 2xpi_A          536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASD  588 (597)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHH
Confidence            9999999999999999999999999999999999999999987  4566554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.4e-28  Score=210.32  Aligned_cols=265  Identities=7%  Similarity=-0.112  Sum_probs=179.2

Q ss_pred             CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775            2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG   81 (293)
Q Consensus         2 p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (293)
                      |.|++..|+.++..|.+.|++++|+.+|++|..   ..|+..++..++.+|.+.|++++|..+++.+..   .+++..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  153 (597)
T 2xpi_A           80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACR  153 (597)
T ss_dssp             --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHH
Confidence            567899999999999999999999999999986   567888999999999999999999999998854   47788899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC-------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK-------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-  141 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-  141 (293)
                      +.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++|.++|++|.+.+.. 
T Consensus       154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  233 (597)
T 2xpi_A          154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC  233 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999864433                   3678999999999999999999999998764321 


Q ss_pred             ---------------------------------------------------------------------CcHhHHHHHHH
Q 036775          142 ---------------------------------------------------------------------PDDVTFIALIS  152 (293)
Q Consensus       142 ---------------------------------------------------------------------p~~~~~~~ll~  152 (293)
                                                                                           ++..+++.++.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~  313 (597)
T 2xpi_A          234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred             hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence                                                                                 45566666666


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhh
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~  230 (293)
                      ++.+.|++++|.++|+++.+. + +.+..++..++.+|.+.|++++|..+++++ .. ..+..+|..++..|.+.|++++
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence            777777777777777766642 1 122333333333333333333333333333 11 1223344444444555555555


Q ss_pred             chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      |..+|+++.+..|.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus       392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555554444444444555555555555555555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.8e-23  Score=171.44  Aligned_cols=264  Identities=14%  Similarity=0.059  Sum_probs=156.9

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+..+|..+...+.+.|++++|++.|+++.+..  +.+...|..+..++.+.|++++|.+.++.+.+  ..|.+...+..
T Consensus        65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~  140 (388)
T 1w3b_A           65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSD  140 (388)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence            466778888888888888888888888887742  33455677788888888888888888888776  23344555667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH------
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC------  154 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~------  154 (293)
                      +...+...|++++|.+.|+++.+.   +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+      
T Consensus       141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCH
Confidence            777777778888888888777643   3456777777777777777777777776654322 233444444444      


Q ss_pred             ----------------------------hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          155 ----------------------------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       155 ----------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                                                  .+.|++++|...++++.+  ..+.+..++..+..+|.+.|++++|...|+++
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                        444444444444444443  11122334444444555555555555555444


Q ss_pred             -C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          207 -P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       207 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                       . ...+..++..+...+...|++++|...++++.+..|.+..++..+..++.+.|++++|.+.|+++.+
T Consensus       298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             1 1223334444444555555555555555555544444455555555555555555555555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=1.7e-23  Score=171.68  Aligned_cols=248  Identities=11%  Similarity=0.064  Sum_probs=181.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      ..+|..+..++.+.|++++|++.|+++.+.   .|+ ...+..+...+...|++++|.+.++.+.+  ..|.+..++..+
T Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l  175 (388)
T 1w3b_A          101 IDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNL  175 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            345666666666666666666666665553   222 23344444445555555555555555544  223334444555


Q ss_pred             HHHHHHcCCHHHHHHHHHH----------------------------------hhh--C-CcccHHHHHHHHHhcCCHHH
Q 036775           85 INMYVKCGDVGIAIQVFNM----------------------------------LAY--K-DMISWSTVISGLAMNGCGRQ  127 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~----------------------------------~~~--~-~~~~~~~li~~~~~~~~~~~  127 (293)
                      ...+.+.|++++|.+.|++                                  ..+  | +..++..+..++...|++++
T Consensus       176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  255 (388)
T 1w3b_A          176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL  255 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            5555555555555555444                                  432  2 45678889999999999999


Q ss_pred             HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036775          128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-  206 (293)
Q Consensus       128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-  206 (293)
                      |.+.|+++.+.+.. +..++..+..++.+.|++++|...++++.+  ..+.+..++..+...+.+.|++++|...++++ 
T Consensus       256 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          256 AIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999987543 577899999999999999999999999997  34567789999999999999999999999998 


Q ss_pred             CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          207 PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       207 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      ...|+ ..++..+...+...|++++|...++++.+..|.++..|..+...+...|+
T Consensus       333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            55554 66899999999999999999999999999989899999999888776653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.9e-22  Score=167.30  Aligned_cols=263  Identities=11%  Similarity=0.007  Sum_probs=144.7

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+.+.|++++|+.+|+++.+.  .+.+...+..+..++...|++++|...++.+.+  ..+.+..++..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l  100 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LKMDFTAARLQR  100 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence            5566667777777777777777777777654  244566666666777777777777777777666  234445566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDM------ISWSTV------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      ..+|.+.|++++|.+.|+++.+.++      ..+..+            ...+...|++++|...|+++.+... .+..+
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  179 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL  179 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence            7777777777777777766654322      333333            2225555566666666655554322 14444


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---------------
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---------------  210 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---------------  210 (293)
                      +..+..++.+.|++++|...|+.+.+.  .+.+..++..+..+|...|++++|...|+++ ...|               
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  257 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL  257 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            555555555555555555555555431  1223444445555555555555555555444 1122               


Q ss_pred             -------------------------------h-----HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775          211 -------------------------------E-----WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN  254 (293)
Q Consensus       211 -------------------------------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  254 (293)
                                                     +     ...+..+...+...|++++|...++++.+..|.++.+|..+..
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence                                           2     2234444444555555555555555555544545555555555


Q ss_pred             HHhcCCCHHHHHHHHHHHHH
Q 036775          255 TFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       255 ~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +|...|++++|.+.+++..+
T Consensus       338 ~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            55555555555555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.8e-22  Score=168.53  Aligned_cols=248  Identities=8%  Similarity=-0.020  Sum_probs=173.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH---HHHHHHHHH------------hcccCcchHHHHHHHHHHh
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE---ATLVNVLSA------------CSSISALSFGQYVHSYIST   70 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~   70 (293)
                      ..+|..+...|.+.|++++|.+.|+++.+..  +.+.   ..+..+...            +...|++++|...++.+.+
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  171 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE  171 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555555555555555555421  2222   344444222            4555555666666655554


Q ss_pred             hcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH
Q 036775           71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF  147 (293)
Q Consensus        71 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  147 (293)
                        ..+.+..++..++.+|.+.|++++|.++|+++.+   .+..+|..+..++...|++++|...|+++.+.... +...+
T Consensus       172 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~  248 (450)
T 2y4t_A          172 --VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCF  248 (450)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             --hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHH
Confidence              2344556667777777777777777777777754   25677888888888999999999999888765322 33444


Q ss_pred             HHH------------HHHHhcCCChhHHHHHHHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-h
Q 036775          148 IAL------------ISACSHGGLVDQGLILFKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-E  211 (293)
Q Consensus       148 ~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~  211 (293)
                      ..+            ...+.+.|++++|...|+.+.+...-.+.  ...+..+..++.+.|++++|...++++ ...| +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  328 (450)
T 2y4t_A          249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN  328 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            444            67888899999999999998863211111  347888999999999999999999997 4444 5


Q ss_pred             HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          212 WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ...|..+..+|...|+++.|...++++.+..|.++..+..+..+...
T Consensus       329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            77899999999999999999999999999989888888887665443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.1e-21  Score=156.88  Aligned_cols=272  Identities=9%  Similarity=-0.038  Sum_probs=233.3

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...+..+...+...|++++|+++|+++.+..  +.+...+..++.++...|++++|...++.+.+  ..+.+...+..
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~   95 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD--LYPSNPVSWFA   95 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSTHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHH
Confidence            356677788889999999999999999998863  45556777788888999999999999999988  45567788899


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775           84 VINMYVKCG-DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus        84 l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                      +...+...| ++++|.+.|++..+.   +...|..+...+...|++++|...|+++.+.... +...+..+...+...|+
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence            999999999 999999999998854   5678999999999999999999999999886543 45677778999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CchHhHHHHHHHHHHhcCCh
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI----------EAEWSVWGALLNACRIHRND  228 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~~  228 (293)
                      +++|...++++.+  ..+.+...+..+...|...|++++|...+++. ..          ..+...+..+...+...|++
T Consensus       175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999986  33456788999999999999999999999887 11          23356888999999999999


Q ss_pred             hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775          229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  284 (293)
                      +.|...+++..+..|.+...+..+..++.+.|++++|.+.|++..+  +.|+....
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~  306 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFS  306 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHH
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHH
Confidence            9999999999999999999999999999999999999999998665  45655433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=3.5e-21  Score=156.52  Aligned_cols=262  Identities=9%  Similarity=-0.147  Sum_probs=217.0

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...|..+...+.+.|++++|++.|+++.+.  .+.+...+..+..++...|++++|...++++.+  ..+.+..++..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~  138 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQPNNLKALMA  138 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHH
Confidence            45667889999999999999999999999886  355678899999999999999999999999988  34566888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---C----------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhHHHH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---D----------MISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIA  149 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~  149 (293)
                      +..+|...|++++|...|+++.+.   +          ...+..+...+...|++++|...|+++.+.... ++..++..
T Consensus       139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            999999999999999999998753   1          223344588899999999999999999886433 26788999


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCC
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRN  227 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~  227 (293)
                      +...+...|++++|...++++.+.  .+.+..++..+..+|...|++++|...|++. ...| +...+..+...|...|+
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            999999999999999999999872  3456788999999999999999999999998 4445 46688999999999999


Q ss_pred             hhhchHHHHHHHhhcCC------------chhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          228 DEMFDPIRQELVNKKGV------------SVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       228 ~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      +++|...+++..+..|.            +..+|..+..++...|+.+.+.++.++
T Consensus       297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999998876543            367899999999999999999887754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=5.1e-21  Score=155.57  Aligned_cols=261  Identities=10%  Similarity=-0.068  Sum_probs=219.2

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+.+.|++++|+..|+++.+.  .+.+...+..+..++...|++++|...++.+.+  ..+.+..++..+
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l  138 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQTALMAL  138 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence            4667888999999999999999999999886  355677888999999999999999999999988  345678889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCC---cccHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKD---MISWST---------------VISGLAMNGCGRQALQLFSLMIINGVFP-DDV  145 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~  145 (293)
                      ...|...|++++|.+.|+++.+.+   ...+..               .+..+...|++++|...|+++.+..... +..
T Consensus       139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  218 (368)
T 1fch_A          139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  218 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence            999999999999999999987642   222211               2333448899999999999998764332 578


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~  223 (293)
                      ++..+...+.+.|++++|...++++.+.  .+.+...+..+...|...|++++|...|++. ...| +...+..+...|.
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8999999999999999999999999862  2445778999999999999999999999998 3344 4668888999999


Q ss_pred             hcCChhhchHHHHHHHhhcCCc-----------hhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          224 IHRNDEMFDPIRQELVNKKGVS-----------VGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      ..|+++.|...+++..+..|.+           ..+|..+..++...|++++|..++++
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            9999999999999998877655           78899999999999999999998763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=1.5e-19  Score=146.04  Aligned_cols=269  Identities=9%  Similarity=-0.001  Sum_probs=181.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC---CchhHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS---VSNLVG   81 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~   81 (293)
                      +..+|..+...+...|++++|+..|+++.+..  +.+...+..+..++...|++++|...++.+.+  ..+   .+...+
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~  111 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSEQEEKEAE  111 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--SCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCcccChHHHH
Confidence            45566666667777777777777777766642  23455666666667777777777777777655  222   233334


Q ss_pred             HHH------------HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           82 NAV------------INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        82 ~~l------------~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      ..+            ...+...|++++|.+.++++.+.   +...+..+..++...|++++|...++++.+... .+..+
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  190 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEA  190 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence            333            46666777777777777766542   445666777777777777777777777776543 25667


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCchH-
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA------------CVVDMYGRAGLLEEAEAFIREM-PIEAEW-  212 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-  212 (293)
                      +..+...+...|++++|...++...+..  +.+...+.            .+...+.+.|++++|...+++. ...|+. 
T Consensus       191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  268 (359)
T 3ieg_A          191 FYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA  268 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Confidence            7777777777788888888877777521  22222222            2255677788888888888776 222322 


Q ss_pred             ----hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          213 ----SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       213 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                          ..+..+...+...|+++.|...+++..+..|.++.++..+..++...|++++|.+.|++..+  +.|+..
T Consensus       269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~  340 (359)
T 3ieg_A          269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ  340 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence                22445666788888888888888888888888888888888888888899999888888775  345543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=1.1e-20  Score=150.82  Aligned_cols=261  Identities=8%  Similarity=-0.115  Sum_probs=220.7

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|+.+|+++.+..  +.+...+..+..++...|++++|...++.+.+  ..+.+..++..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcCCHHHHHHH
Confidence            55667788889999999999999999998863  45677888899999999999999999999988  345677888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTV--------------IS-GLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      ...+...|++++|.+.++++.+.   +...+..+              .. .+...|++++|...++++.+.... +...
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~  174 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL  174 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence            99999999999999999998864   33334433              22 377789999999999999876543 7788


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI  224 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~  224 (293)
                      +..+...+...|++++|...++.+.+.  .+.+...+..+...|...|++++|...+++. ...| +...+..+...+..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999862  2445778999999999999999999999997 3334 56688889999999


Q ss_pred             cCChhhchHHHHHHHhhcCC------------chhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          225 HRNDEMFDPIRQELVNKKGV------------SVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       225 ~~~~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      .|+++.|...+++..+..|.            +..++..+..++.+.|++++|..++++.
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999988777            6889999999999999999999998753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=7.4e-19  Score=141.99  Aligned_cols=269  Identities=11%  Similarity=0.006  Sum_probs=224.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      |+..|..+...+...|++++|+..|+++.+.  .+.+...+..+..++...|++++|...++.+.+  ..+.+...+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--LKMDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcchHHHHH
Confidence            5678888999999999999999999999886  355678899999999999999999999999987  345567888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDM------ISWSTV------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      ...+...|++++|...|+++.+.++      ..+..+            ...+...|++++|.+.++++.+... .+...
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  156 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL  156 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence            9999999999999999999986544      233333            5788999999999999999988654 36788


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHH--------
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWG--------  216 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~--------  216 (293)
                      +..+...+...|++++|...++.+.+  ..+.+..++..+...|...|++++|...+++. ...|+. ..+.        
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence            99999999999999999999999986  33556788999999999999999999999988 323332 2222        


Q ss_pred             ----HHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          217 ----ALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       217 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                          .+...+...|+++.|...+++..+..|.++.    .+..+..++...|++++|.+.+++..+.  .|+..
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~  306 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNV  306 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccH
Confidence                2255588999999999999999998877653    3566889999999999999999998874  45443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1e-19  Score=154.31  Aligned_cols=180  Identities=10%  Similarity=-0.098  Sum_probs=117.1

Q ss_pred             cCCHHHHHHHHHHhhh----------------C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           91 CGDVGIAIQVFNMLAY----------------K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      .|++++|..+|+++.+                + +..++..+...+...|++++|...|+++.+....  ..++..+..+
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~  279 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI  279 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence            5566666666665544                1 2345556666666677777777777766655332  5666666666


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +...|++++|...++.+.+  ..+.+...+..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus       280 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  357 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC  357 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence            7777777777777776664  22334556666777777777777777777766 2222 344566666667777777777


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...++++.+..|.++.++..+...+...|++++|.+.++++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777776666667777777777777777777777776655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.9e-19  Score=150.68  Aligned_cols=263  Identities=8%  Similarity=-0.079  Sum_probs=222.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      ....|......+.+.|++++|+..|+++.+.   .|+...|..+..++...|++++|...++.+.+  ..|.+..++..+
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l   79 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPDYSKVLLRR   79 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cChHHHHHHHHH
Confidence            4566778888999999999999999999984   47999999999999999999999999999988  346677889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCc-------------------------------------------------------
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDM-------------------------------------------------------  109 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~-------------------------------------------------------  109 (293)
                      ..+|.+.|++++|...|+++.+.+.                                                       
T Consensus        80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (514)
T 2gw1_A           80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP  159 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence            9999999999999999998864321                                                       


Q ss_pred             ---------------------------ccHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCcHhH
Q 036775          110 ---------------------------ISWSTVISGLAM---NGCGRQALQLFSLMII-----NGV--------FPDDVT  146 (293)
Q Consensus       110 ---------------------------~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~  146 (293)
                                                 ..+......+..   .|++++|...|+++.+     ...        +.+..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2gw1_A          160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS  239 (514)
T ss_dssp             CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence                                       112222333333   7999999999999987     311        123567


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI  224 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~  224 (293)
                      +..+...+...|++++|...++.+.+. .  |+...+..+..+|...|++++|...+++. ...| +...+..+...+..
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence            888888999999999999999999873 3  33778889999999999999999999988 4444 55678888999999


Q ss_pred             cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      .|+++.|...+++..+..|.+...+..+...+...|++++|.++++++.+.
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  367 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK  367 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999889999999999999999999999999998874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.2e-18  Score=139.31  Aligned_cols=254  Identities=10%  Similarity=-0.035  Sum_probs=216.3

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      +...+..++..+...|++++|..+++++.+.  .+.+...+..+...+...| ++++|...++.+.+  ..+.+...+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~  130 (330)
T 3hym_B           55 HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIA  130 (330)
T ss_dssp             CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHH
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHH
Confidence            4556777888999999999999999999886  3456778888889999999 99999999999987  34556788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +...+...|++++|.+.|+++.+.   +...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++
T Consensus       131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~  209 (330)
T 3hym_B          131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEW  209 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccH
Confidence            999999999999999999998753   4667888999999999999999999999887543 678899999999999999


Q ss_pred             hHHHHHHHHhhhhcC-------CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          161 DQGLILFKAMSTVYE-------IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ++|...++++.+...       .+....++..+..+|...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus       210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence            999999999886321       1334578999999999999999999999988 3333 556788899999999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHH-hcCCCHH
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTF-AGADRWE  263 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~  263 (293)
                      ...+++..+..|.++..+..+..++ ...|+.+
T Consensus       290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            9999999999999999999999988 5666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=9.8e-20  Score=147.97  Aligned_cols=258  Identities=8%  Similarity=-0.028  Sum_probs=203.6

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHccCCCc--hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           15 GYAERGFCEEAVS-VFQEMEKTKEAEP--NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        15 ~~~~~~~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      ++...|++++|++ .|++.....+..|  +...+..+...+...|++++|...++.+.+  ..+.+..++..+..++.+.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence            3445678888888 8887655321222  345677888899999999999999999988  4566788899999999999


Q ss_pred             CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH---------------HHHH
Q 036775           92 GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA---------------LISA  153 (293)
Q Consensus        92 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~~  153 (293)
                      |++++|.+.|+++.+.   +..++..+..++...|++++|...|+++...... +...+..               .+..
T Consensus       112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            9999999999998753   5678999999999999999999999999886543 2222211               2334


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +...|++++|...++.+.+.....++..++..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence            44889999999999999873222225788999999999999999999999998 3344 466889999999999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ...+++..+..|.+..++..+..++.+.|++++|...|++..+.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=6e-19  Score=138.74  Aligned_cols=245  Identities=9%  Similarity=-0.036  Sum_probs=177.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCchH--HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNE--ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK   90 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   90 (293)
                      |......|+++.|+..++....   ..|+.  .....+.+++...|+++.|...++.     ..+|+..++..+...+..
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~   77 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLAS   77 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcC
Confidence            3445667888888888777644   34443  3455667788888888887764432     245666777788888888


Q ss_pred             cCCHHHHHHHHHHhhh----C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775           91 CGDVGIAIQVFNMLAY----K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      .++.++|++.++++..    | +...+..+..++...|++++|++.+++      +.+...+..+...+.+.|++++|.+
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~  151 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK  151 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            8888888888888753    3 344566667788888888888888877      3567778888888888888888888


Q ss_pred             HHHHhhhhcCCCcchhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          166 LFKAMSTVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      .++.+.+.   .|+....   ..++..+...|++++|..+|+++  ....+...++.+..++...|++++|...+++..+
T Consensus       152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888762   2443211   22334444558888888888887  2234566788888888888888888888888888


Q ss_pred             hcCCchhhHHHHHHHHhcCCCHHH-HHHHHHHHHH
Q 036775          241 KKGVSVGTFALMSNTFAGADRWED-ANKIRDEIRR  274 (293)
Q Consensus       241 ~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~  274 (293)
                      ..|.++.++..++..+...|+.++ +.++++++.+
T Consensus       229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            888888888888888888888865 5678777765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=3.8e-21  Score=167.46  Aligned_cols=130  Identities=13%  Similarity=0.104  Sum_probs=116.1

Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHhh-------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHH
Q 036775           76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLA-------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI  148 (293)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  148 (293)
                      .-..+|++||++||+.|++++|.++|++|.       .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            345689999999999999999999998875       4699999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCh-hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          149 ALISACSHGGLV-DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       149 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ++|.++++.|+. ++|.++|++|.+ .|+.||..+|++++....+.+-++.+.++...+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f  262 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF  262 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence            999999999985 789999999998 799999999999998887776665555554444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.84  E-value=4.4e-18  Score=145.10  Aligned_cols=262  Identities=11%  Similarity=-0.040  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..+...+.+.|++++|++.|+++.+.  .+.+...+..+..++...|++++|.+.++.+.+  ..|.+...+..+..
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~  101 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHH
Confidence            44555566666666666666666666654  234455666666666666666666666666655  23445555666666


Q ss_pred             HHHHcCCHHHHHHHH-----------------------------------------------------------------
Q 036775           87 MYVKCGDVGIAIQVF-----------------------------------------------------------------  101 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~-----------------------------------------------------------------  101 (293)
                      ++...|++++|...|                                                                 
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            666666666665554                                                                 


Q ss_pred             --------------------------------------------HHhhhCCc----------ccHHHHHHHHHhcCCHHH
Q 036775          102 --------------------------------------------NMLAYKDM----------ISWSTVISGLAMNGCGRQ  127 (293)
Q Consensus       102 --------------------------------------------~~~~~~~~----------~~~~~li~~~~~~~~~~~  127 (293)
                                                                  +++.+.++          .++..+...+...|++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                                                        33332211          135566677788899999


Q ss_pred             HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036775          128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-  206 (293)
Q Consensus       128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-  206 (293)
                      |...|+++.+.  .|+..++..+...+...|++++|...++.+.+.  .+.+..++..+...|...|++++|...+++. 
T Consensus       262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999999876  455788888999999999999999999999862  2445778899999999999999999999988 


Q ss_pred             CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          207 PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       207 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      ...| +...+..+...+...|+++.|...++++.+..|.++.++..+...+...|++++|.+.|++..+..
T Consensus       338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            3333 456788888889999999999999999999999899999999999999999999999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=3e-19  Score=145.09  Aligned_cols=233  Identities=6%  Similarity=-0.090  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      +...+..+...+.+.|++++|...++.+.+  ..|.+..++..+...|.+.|++++|+..|+++.+.   +..+|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            345588888999999999999999999988  45667888999999999999999999999998753   5678999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC---------cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFP---------DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      ++...|++++|...|+++.+.....         ....+..+...+...|++++|...++++.+.....++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            9999999999999999998753210         1223334577889999999999999999974322226788999999


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775          189 MYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       189 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      .|...|++++|...|++. ...| +..+|..+...|...|++++|...+++..+..|.+..++..+..+|.+.|++++|.
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999998 3334 56789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 036775          267 KIRDEIRRM  275 (293)
Q Consensus       267 ~~~~~m~~~  275 (293)
                      ..|++..+.
T Consensus       302 ~~~~~al~~  310 (365)
T 4eqf_A          302 SNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=3.4e-21  Score=167.75  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=121.7

Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV  186 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  186 (293)
                      .|||+||++|++.|++++|.++|++|.+   .|+.||..|||+||.+||+.|++++|.++|++|.+ .|+.||..||+++
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence            4899999999999999999999988764   58999999999999999999999999999999997 7999999999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC------chhhHHHHHHHH
Q 036775          187 VDMYGRAGLL-EEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV------SVGTFALMSNTF  256 (293)
Q Consensus       187 ~~~~~~~g~~-~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~  256 (293)
                      |.++++.|+. ++|.++|++|   |+.||..+|++++.++.+.+-.+.+.    ++.....|      ...+-..|...|
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr----kv~P~f~p~~~~~~~~~t~~LL~dl~  282 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH----KVKPTFSLPPQLPPPVNTSKLLRDVY  282 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG----GGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH----HhCcccCCCCCCcccccchHHHHHHH
Confidence            9999999985 7899999999   89999999999987665543333333    33222222      234556677777


Q ss_pred             hcCC
Q 036775          257 AGAD  260 (293)
Q Consensus       257 ~~~g  260 (293)
                      .+.+
T Consensus       283 s~d~  286 (1134)
T 3spa_A          283 AKDG  286 (1134)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            7665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=5.1e-18  Score=133.42  Aligned_cols=232  Identities=10%  Similarity=-0.021  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCC-CCchhHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL-SVSNLVGNAVI   85 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~   85 (293)
                      ...-.+..+|...|+++.|+..++.   .  .+|+..++..+...+...++.++|.+.++.+.. .+. |.+...+..+.
T Consensus        35 e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la  108 (291)
T 3mkr_A           35 ERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAA  108 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHH
Confidence            3455678899999999999986654   2  567888999999999999999999999999887 454 44666778888


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH---HHHHHHHhcCCChhH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF---IALISACSHGGLVDQ  162 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~  162 (293)
                      ..+...|++++|++.+++  ..+...+..++..+.+.|++++|.+.|+++.+..  |+....   ...+..+...|++++
T Consensus       109 ~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~e  184 (291)
T 3mkr_A          109 SIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQD  184 (291)
T ss_dssp             HHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHH
Confidence            999999999999999998  4577789999999999999999999999998864  443211   223344556799999


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh-chHHHHHHH
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM-FDPIRQELV  239 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~  239 (293)
                      |..+|+++.+.  .+.+...++.+..++.+.|++++|...|++. ...| +..++..++..+...|+.++ +..+++++.
T Consensus       185 A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          185 AYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999973  4667889999999999999999999999997 4444 56688889989989999865 678999999


Q ss_pred             hhcCCchhhHH
Q 036775          240 NKKGVSVGTFA  250 (293)
Q Consensus       240 ~~~~~~~~~~~  250 (293)
                      +..|.++.+..
T Consensus       263 ~~~P~~~~~~d  273 (291)
T 3mkr_A          263 DAHRSHPFIKE  273 (291)
T ss_dssp             HHCTTCHHHHH
T ss_pred             HhCCCChHHHH
Confidence            99988876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=2.8e-17  Score=140.10  Aligned_cols=250  Identities=6%  Similarity=-0.085  Sum_probs=206.5

Q ss_pred             CCHHHHHHHHHHHHHccCCCch-----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775           20 GFCEEAVSVFQEMEKTKEAEPN-----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV   94 (293)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   94 (293)
                      |++++|+.+|+++.+..+..++     ..++..+...+...|++++|...++.+.+   ..|+...+..+...+...|++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCH
Confidence            5899999999999875311111     23466667778889999999999999987   345578888999999999999


Q ss_pred             HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775           95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus        95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      ++|.+.|+++.+.   +..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++.+.
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~  371 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK  371 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998753   5678999999999999999999999999886543 56788899999999999999999999998


Q ss_pred             hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-------hHhHHHHHHHHHHhc----------CChhhchH
Q 036775          172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-------EWSVWGALLNACRIH----------RNDEMFDP  233 (293)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-------~~~~~~~l~~~~~~~----------~~~~~a~~  233 (293)
                      +.  .+.+...+..+...|...|++++|...|+++ ...|       ....+......+...          |+++.|..
T Consensus       372 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          372 LK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence            73  3455678899999999999999999999987 1111       122234445567777          99999999


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      .+++..+..|.+..++..+..++.+.|++++|.+.|++..+.
T Consensus       450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998774

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=4.4e-19  Score=143.47  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=116.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +..+|..|..++.+.|++++|++.|.+       .+|..+|..++.++...|++++|...++...+ .  .+++.+.+.|
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~--~~~~~i~~~L  100 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETEL  100 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-h--CccchhHHHH
Confidence            335999999999999999999999964       35777999999999999999999998887766 2  4557778999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                      +.+|.+.|+++++.++++   .|+..+|+.+...|...|++++|...|..+         ..|..+..++.+.|++++|.
T Consensus       101 i~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          101 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             --------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence            999999999999998885   477789999999999999999999999987         47999999999999999999


Q ss_pred             HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      +.++.+.       ++.+|..++.+|...|+++.|......+...|+.  ...++..|.+.|.++++..+++......+.
T Consensus       169 ea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          169 DGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence            9999872       5788999999999999999998888777656655  446888899999999999999999988887


Q ss_pred             chhhHHHHHHHHhcC--CCHHHHHHHH
Q 036775          245 SVGTFALMSNTFAGA--DRWEDANKIR  269 (293)
Q Consensus       245 ~~~~~~~li~~~~~~--g~~~~a~~~~  269 (293)
                      ....|.-|..+|++-  ++..+..+.|
T Consensus       240 h~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          240 HMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            888888888888765  3444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.3e-17  Score=126.23  Aligned_cols=224  Identities=10%  Similarity=-0.039  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-CCCCc----hhH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-DLSVS----NLV   80 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~   80 (293)
                      ...|..+...+...|++++|+..|++..+..   .+...+..+..++...|++++|...++.+.+.. ...++    ..+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            3445555666666666666666666665542   444555555555556666666666555554411 00011    244


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +..+...+.+.|++++|...|++..+.+..     ...+...|++++|...++++....                     
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~---------------------  135 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN---------------------  135 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC---------------------
Confidence            455555555555555555555554432211     122333444444444444444331                     


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                                      +.+...+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...+++.
T Consensus       136 ----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          136 ----------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                            122334444444555555555555555444 111 12334444445555555555555555555


Q ss_pred             HhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       239 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+..|.++..+..+..++...|++++|.+.+++..+
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=2.5e-17  Score=131.40  Aligned_cols=230  Identities=10%  Similarity=0.003  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      +...+......+...|++++|..+++.+.+  ..+.+...+..+...+...|++++|.+.|+++.+.   +..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            445567778889999999999999999988  44567788899999999999999999999998753   5667888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH--------------HH-HHhcCCChhHHHHHHHHhhhhcCCCcchhH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL--------------IS-ACSHGGLVDQGLILFKAMSTVYEIVPQTQH  182 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  182 (293)
                      .+...|++++|.+.++++.+.... +...+..+              .. .+...|++++|...++.+.+.  .+.+...
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~  174 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL  174 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence            999999999999999999876432 22333332              22 377889999999999999862  3446788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775          183 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD  260 (293)
Q Consensus       183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  260 (293)
                      +..+...|...|++++|...+++. ...| +...+..+...+...|++++|...+++..+..|.+..++..+..++...|
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999988 3334 46688889999999999999999999999999989999999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 036775          261 RWEDANKIRDEIRRM  275 (293)
Q Consensus       261 ~~~~a~~~~~~m~~~  275 (293)
                      ++++|.+.+++..+.
T Consensus       255 ~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYM  269 (327)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999998774

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.7e-17  Score=124.47  Aligned_cols=187  Identities=11%  Similarity=-0.004  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--Cc----HhHHHHH
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF--PD----DVTFIAL  150 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~----~~~~~~l  150 (293)
                      ..+..+...+...|++++|...|++..+  .+..+|..+..++...|++++|...+++..+....  |+    ..++..+
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3455666666666777777666666543  34555666667777777777777777766553211  11    4677788


Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND  228 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~  228 (293)
                      ...+...|++++|...++...+.   .|+.       ..+...|++++|...+++. ...| +...+..+...+...|++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            88888888888888888888762   3442       3566778899999999988 3344 445788888889999999


Q ss_pred             hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      +.|...+++..+..|.++.++..+..++...|++++|.+.+++..+.
T Consensus       156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=2e-17  Score=124.43  Aligned_cols=197  Identities=12%  Similarity=-0.061  Sum_probs=151.0

Q ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      || ++...|..+...+.+.|++++|+..|++..+.  .+.+...+..+..++.+.|++++|...+++..+  ..|.+...
T Consensus         1 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a   75 (217)
T 2pl2_A            1 MQ-TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGG   75 (217)
T ss_dssp             ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHH
Confidence            44 67788889999999999999999999999885  355677888888899999999999999999987  34556778


Q ss_pred             HHHHHHHHHHc-----------CCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775           81 GNAVINMYVKC-----------GDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT  146 (293)
Q Consensus        81 ~~~l~~~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  146 (293)
                      +..+...+.+.           |++++|+..|++..+  | +...|..+..++...|++++|+..|++..+..  .+...
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~  153 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence            88899999998           999999999988875  3 45678888888889999999999999888876  57788


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +..+..++...|++++|...|+...+.  .+.+...+..+..++...|++++|...+++.
T Consensus       154 ~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            888888888999999999999888862  2345677888888888899999998888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=3.2e-17  Score=123.38  Aligned_cols=196  Identities=12%  Similarity=-0.008  Sum_probs=147.3

Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      |++...+..+...+.+.|++++|...|++..+.   +...|..+..++.+.|++++|+..|++..+..+. +...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            566677778888888888888888888887754   4556777888888888888888888888776433 566777788


Q ss_pred             HHHhcC-----------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHH
Q 036775          152 SACSHG-----------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALL  219 (293)
Q Consensus       152 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~  219 (293)
                      .++...           |++++|...+++..+.  -+-+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            888888           9999999999998862  2345677888999999999999999999887 2226677888888


Q ss_pred             HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..+...|++++|...+++..+..|.++..+..+..++.+.|++++|.+.|++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999988653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.77  E-value=6.9e-17  Score=125.71  Aligned_cols=243  Identities=8%  Similarity=-0.085  Sum_probs=192.8

Q ss_pred             HHcCCHHHHHHHHHHHHHccCC--CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775           17 AERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV   94 (293)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   94 (293)
                      ...|++++|++.|+++.+....  +.+...+..+...+...|++++|...++.+.+  ..+.+..++..+...|...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCH
Confidence            3468899999999999885311  22467888889999999999999999999988  3456788899999999999999


Q ss_pred             HHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775           95 GIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus        95 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      ++|.+.|++..+  | +..+|..+..++...|++++|...|+++.+..  |+.......+..+...|++++|...++...
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999886  3 67789999999999999999999999998753  444444455556677799999999998887


Q ss_pred             hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-----HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-----WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      .  ..+++...+. ++..+...++.++|...+++. ...|+     ...+..+...|...|++++|...+++..+..|.+
T Consensus       172 ~--~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          172 E--KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             H--HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             h--cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            6  2344444444 777788888899999999887 43342     4678888888999999999999999999887766


Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          246 VGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       246 ~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      ...+   ..++...|++++|.+.+
T Consensus       249 ~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHHH---HHHHHHHHHHHHC----
T ss_pred             HHHH---HHHHHHHHHHHhhHHHH
Confidence            4444   55677788888888776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=4.5e-16  Score=121.00  Aligned_cols=245  Identities=11%  Similarity=-0.013  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLVGNAV   84 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l   84 (293)
                      ..+......+...|++++|+..|++..+..  +.+...+..+..++...|++++|...++.+.+ ....++  ...+..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            344556667778888888888888887742  23344677777777888888888888887766 332222  2236777


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ...+...|++++|++.|++..+.   +..+|..+...+...|++++|...|++..+... .+...+..+...+...++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence            77777888888888888777642   455677777777777777777777777766522 24455555552333344777


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCch------HhHHHHHHHHHHhcCCh
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL---LEEAEAFIREM----PIEAE------WSVWGALLNACRIHRND  228 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~~  228 (293)
                      +|...++.+.+.  .+.+...+..+..++...|+   +++|...+++.    ...|+      ...|..+...|...|++
T Consensus       160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            777777777652  22334556666666666666   65666666555    11232      13455566666677777


Q ss_pred             hhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          229 EMFDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      +.|...+++..+..|.++.....+.....
T Consensus       238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          238 VKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            77777777777766666666555544433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=1.4e-15  Score=118.21  Aligned_cols=233  Identities=8%  Similarity=-0.005  Sum_probs=188.2

Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCccc----HHHHH
Q 036775           43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMIS----WSTVI  116 (293)
Q Consensus        43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~----~~~li  116 (293)
                      ..+......+...|++++|...++.+.+  ..|.+...+..+..+|...|++++|++.+++..+  ++...    |..+.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3455566778899999999999999987  4455666889999999999999999999999886  23333    88999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775          117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL  196 (293)
Q Consensus       117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  196 (293)
                      ..+...|++++|...|++..+.... +..++..+...+...|++++|...+++..+  ..+.+...+..+...+...+++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886443 667899999999999999999999999986  2344567777787344455699


Q ss_pred             HHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCC---hhhchHHHHHHHhhc---CCc-----hhhHHHHHHHHhcCCCHH
Q 036775          197 EEAEAFIREM-PIEAE-WSVWGALLNACRIHRN---DEMFDPIRQELVNKK---GVS-----VGTFALMSNTFAGADRWE  263 (293)
Q Consensus       197 ~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~li~~~~~~g~~~  263 (293)
                      ++|...|++. ...|+ ...+..+...+...|+   .+.|...+++..+..   +..     ..+|..+...|...|+++
T Consensus       159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999998 44444 5567777778888888   888999998888754   221     257888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCc
Q 036775          264 DANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       264 ~a~~~~~~m~~~~~~p~~~  282 (293)
                      +|.+.|++..+.  .|+..
T Consensus       239 ~A~~~~~~al~~--~p~~~  255 (272)
T 3u4t_A          239 KADAAWKNILAL--DPTNK  255 (272)
T ss_dssp             HHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHhc--CccHH
Confidence            999999998873  45544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=5.4e-16  Score=119.21  Aligned_cols=205  Identities=8%  Similarity=-0.096  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHH
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISG  118 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~  118 (293)
                      ...+..+...+...|++++|...++.+.+  ..+.+..++..+...|...|++++|.+.|+++.+.   +...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            46677777888888999999998888877  34556777888888899999999999999887653   55678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      +...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...++++.+.  .+.+...+..+...|...|+++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence            899999999999999887733344 4567788888888999999999999988862  2345677888889999999999


Q ss_pred             HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775          198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFA  250 (293)
Q Consensus       198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  250 (293)
                      +|...+++. ...| +...+..+...+...|+.+.|...++++.+..|.++....
T Consensus       193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999887 3333 4556777778888999999999999999888877766544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=5.3e-16  Score=116.89  Aligned_cols=194  Identities=8%  Similarity=-0.025  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      ..+..+...+...|++++|.+.|+++.+.   +...|..+...+...|++++|.+.++++.+... .+..++..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence            34444444555555555555555544431   233444455555555555555555555544322 13444555555555


Q ss_pred             cC-CChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          156 HG-GLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       156 ~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      .. |++++|...++.+.+ .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|+++.|
T Consensus        88 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            55 555555555555553 21222 2344555555555555555555555554 2222 234455555555566666666


Q ss_pred             hHHHHHHHhhcC-CchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          232 DPIRQELVNKKG-VSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       232 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...++...+..| .+...+..+...+...|+.++|..+++.+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            666665555555 5555555555556666666666666665544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.74  E-value=2.8e-16  Score=129.11  Aligned_cols=272  Identities=12%  Similarity=0.034  Sum_probs=211.6

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhh---cCCCC-
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTR---YDLSV-   76 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-   76 (293)
                      ++....+......+...|++++|+..|++..+..+..|.  ...+..+...+...|++++|...+++....   .+.+| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            456667778888999999999999999999886422222  356778888899999999999999987652   12222 


Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCC--------------------HHH
Q 036775           77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGC--------------------GRQ  127 (293)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~  127 (293)
                      ...++..+...|...|++++|...+++..+.     +    ..++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            3456788899999999999999999988642     2    3478889999999999                    999


Q ss_pred             HHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHH
Q 036775          128 ALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       128 a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~  198 (293)
                      |...+++....    +..| ...++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999887542    2122 2357888888899999999999999988753221122    2378889999999999999


Q ss_pred             HHHHHHhC-------CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC------chhhHHHHHHHHhcCCCHHH
Q 036775          199 AEAFIREM-------PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV------SVGTFALMSNTFAGADRWED  264 (293)
Q Consensus       199 a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~  264 (293)
                      |...+++.       +..+ ...++..+...|...|+++.|...+++..+..+.      ...++..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999887       1111 1446778888899999999999999988775421      25678899999999999999


Q ss_pred             HHHHHHHHHH
Q 036775          265 ANKIRDEIRR  274 (293)
Q Consensus       265 a~~~~~~m~~  274 (293)
                      |.+.+++..+
T Consensus       326 A~~~~~~al~  335 (406)
T 3sf4_A          326 AMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=1e-15  Score=115.33  Aligned_cols=207  Identities=10%  Similarity=-0.023  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|++.|+++.+..  +.+...+..+...+...|++++|...++.+.+  ..+.+..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l   82 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHH
Confidence            45555566666666666666666666655532  23344555555555555555555555555544  122333444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN-GCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~  162 (293)
                      ...+                               ... |++++|...++++.+.+..| +...+..+..++...|++++
T Consensus        83 ~~~~-------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           83 GWFL-------------------------------CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             HHHH-------------------------------HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHH-------------------------------HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence            4444                               444 55555555555444421112 13444455555555555555


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC--chHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE--AEWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                      |...++++.+.  .+.+...+..+...|...|++++|...+++. ...  .+...+..+...+...|+.+.+..+++.+.
T Consensus       132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            55555555431  1223444555555555555555555555554 111  233334444444555555666655555555


Q ss_pred             hhcCCchhh
Q 036775          240 NKKGVSVGT  248 (293)
Q Consensus       240 ~~~~~~~~~  248 (293)
                      +..|.++..
T Consensus       210 ~~~p~~~~~  218 (225)
T 2vq2_A          210 ANFPYSEEL  218 (225)
T ss_dssp             HHCTTCHHH
T ss_pred             HhCCCCHHH
Confidence            555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=2e-15  Score=115.99  Aligned_cols=196  Identities=7%  Similarity=-0.054  Sum_probs=163.5

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      ...+..+...+...|++++|.+.|+++.+.   +..++..+...+...|++++|.+.|+++.+.... +...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence            566788888899999999999999988753   5567888888999999999999999998876433 677888888889


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ...|++++|..+++++.+ .+..| +...+..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999875 33344 4567888888999999999999999887 3233 466788888889999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      ...++...+..|.+...+..+...+...|++++|.++++++.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999998888888888999999999999999999999988774

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=8.4e-16  Score=124.91  Aligned_cols=246  Identities=8%  Similarity=-0.021  Sum_probs=184.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc-chHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      +...|+.+...+.+.|++++|++.|++..+..  +-+...|..+..++...|+ +++|...++++.+  ..+.+..+|..
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~~~~a~~~  171 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCCCHHHHHH
Confidence            35667778888888888999999998888752  3446677888888888886 8889888888877  45557778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCC
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGL  159 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~  159 (293)
                      +..++...|++++|+..|+++.+.   +..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.+ .|.
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence            888888888888888888888753   5567888888888888888888888888876554 67788888888887 555


Q ss_pred             hhHH-----HHHHHHhhhhcCCCcchhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCch-HhHHHHHHHHHHhcC-----
Q 036775          160 VDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAG--LLEEAEAFIREMPIEAE-WSVWGALLNACRIHR-----  226 (293)
Q Consensus       160 ~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~-----  226 (293)
                      .++|     +..+++..+.  -+-+...|..+..++...|  ++++|++.++++...|+ ...+..+...|...|     
T Consensus       251 ~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             chHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence            5777     4777777752  2335567888888888877  57888888877744443 446667777776653     


Q ss_pred             ----ChhhchHHHHHH-HhhcCCchhhHHHHHHHHh
Q 036775          227 ----NDEMFDPIRQEL-VNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       227 ----~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~  257 (293)
                          ..++|..+++++ .+.+|.....|..+...+.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence                247888888888 6777777777777666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.73  E-value=3.6e-16  Score=119.33  Aligned_cols=207  Identities=8%  Similarity=-0.010  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHH
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISG  118 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~  118 (293)
                      ...|..+...+...|++++|...++.+.+  ..+.+...+..+...+...|++++|.+.|+++.+.   +..++..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34455555556666666666666666655  33444555566666666666666666666665532   34455566666


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775          119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  198 (293)
                      +...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.  .+.+...+..+...|...|++++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence            6666666666666666655432 24555666666666666666666666666642  22344556666666666666666


Q ss_pred             HHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775          199 AEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS  253 (293)
Q Consensus       199 a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  253 (293)
                      |...+++. ... .+..++..+...+...|+++.|...+++..+..|.+...+..+.
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            66666665 212 23445566666666666666666666666666665555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.72  E-value=6.8e-16  Score=127.24  Aligned_cols=268  Identities=10%  Similarity=-0.035  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---C-CCCchhH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRY---D-LSVSNLV   80 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~   80 (293)
                      ..+..+...+...|++++|+..|+++.+..+..+.  ...+..+...+...|++++|...+++..+..   + .+....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34555667889999999999999999886422221  1467788888999999999999999887621   1 2334566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGC-----------------GRQALQLFSL  134 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~  134 (293)
                      +..+...|...|++++|...+++..+.         ...++..+...+...|+                 +++|.+.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            788999999999999999999987642         23478888999999999                 9999999988


Q ss_pred             HHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775          135 MIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIRE  205 (293)
Q Consensus       135 m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~  205 (293)
                      ..+.    +..+ ...++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            7542    1111 2357888888999999999999999988763211112    23788899999999999999999988


Q ss_pred             C-CCC-------chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          206 M-PIE-------AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       206 ~-~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      . ...       ....++..+...+...|+++.|...+++..+..+      ....++..+..+|...|++++|.+.+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            7 111       1245677888889999999999999998877532      1245788899999999999999999998


Q ss_pred             HHH
Q 036775          272 IRR  274 (293)
Q Consensus       272 m~~  274 (293)
                      ..+
T Consensus       369 al~  371 (411)
T 4a1s_A          369 HLQ  371 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=1.9e-14  Score=112.03  Aligned_cols=226  Identities=11%  Similarity=-0.039  Sum_probs=174.3

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCCchh
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSVSNL   79 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~   79 (293)
                      -+..++..+-..+...|++++|++.|++..+.+    +...+..+...+..    .+++++|...+++..+ .+   +..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~   75 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSN   75 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHH
Confidence            366778888888899999999999999887732    34566677777777    8899999999998877 33   667


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHHHH
Q 036775           80 VGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFIAL  150 (293)
Q Consensus        80 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  150 (293)
                      .+..+...|..    .+++++|++.|++..+. +..++..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77888888888    88999999999888765 55677888888888    888999999998888765   45566667


Q ss_pred             HHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCchHhHHHHHHHH
Q 036775          151 ISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREM-PIEAEWSVWGALLNA  221 (293)
Q Consensus       151 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~  221 (293)
                      ...+..    .+++++|...++...+ .+   +...+..+...|..    .+++++|...|++. ...| ...+..+...
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~  227 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAM  227 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence            777776    8888888888888876 22   45667778888888    88888888888877 2222 5556667777


Q ss_pred             HHh----cCChhhchHHHHHHHhhcCCc
Q 036775          222 CRI----HRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       222 ~~~----~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      |..    .++.++|...+++..+.++++
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            777    788888888888887776644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.72  E-value=6e-16  Score=123.56  Aligned_cols=271  Identities=13%  Similarity=0.037  Sum_probs=208.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhh---cCCC-Cch
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTR---YDLS-VSN   78 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~   78 (293)
                      +...+......+...|++++|+..|+++.+..+..|.  ...+..+...+...|++++|...++...+.   .+.+ ...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            3455666677889999999999999999886422222  357778888899999999999999987652   1222 235


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCC--------------------HHHHH
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGC--------------------GRQAL  129 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~  129 (293)
                      .++..+...|...|++++|...+++..+.     +    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            56788999999999999999999987642     2    2378888899999999                    99999


Q ss_pred             HHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHH
Q 036775          130 QLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAE  200 (293)
Q Consensus       130 ~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~  200 (293)
                      +.+++....    +..| ...++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999886542    2111 2356788888899999999999999988752211111    237888999999999999999


Q ss_pred             HHHHhC-CC------Cc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhHHHHHHHHhcCCCHHHHH
Q 036775          201 AFIREM-PI------EA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       201 ~~~~~~-~~------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      ..+++. ..      .+ ...++..+...+...|+++.|...+++..+..+      ....++..+...+...|++++|.
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999887 11      11 144677788889999999999999998876532      12457888999999999999999


Q ss_pred             HHHHHHHHc
Q 036775          267 KIRDEIRRM  275 (293)
Q Consensus       267 ~~~~~m~~~  275 (293)
                      +.+++..+.
T Consensus       324 ~~~~~a~~~  332 (338)
T 3ro2_A          324 HFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999988763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=2e-17  Score=133.84  Aligned_cols=238  Identities=13%  Similarity=0.079  Sum_probs=132.1

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      .||..+|..++.++...|++++|+..++..++   ..+++.+.+.++.++.+.|++.++.++++        .|+..+|+
T Consensus        58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~  126 (449)
T 1b89_A           58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQ  126 (449)
T ss_dssp             ------------------------------------------------------CHHHHTTTTT--------CC------
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHH
Confidence            46888999999999999999999998887776   34667889999999999999999887764        36667999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      .++..|...|++++|..+|..+     ..|..++.++.+.|++++|.+.+.++      .+..+|..++.+|...|+++.
T Consensus       127 ~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l  195 (449)
T 1b89_A          127 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL  195 (449)
T ss_dssp             ----------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence            9999999999999999999988     58999999999999999999999998      278999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      |......+.    ..|+.  ...++..|.+.|++++|..+++.. +..+ ....|+-|.-.|++. .++...+.++....
T Consensus       196 A~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~  268 (449)
T 1b89_A          196 AQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS  268 (449)
T ss_dssp             HHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST
T ss_pred             HHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence            966554432    23433  557999999999999999999887 4443 455677666666544 33333333333332


Q ss_pred             hc---C-----CchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          241 KK---G-----VSVGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       241 ~~---~-----~~~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      ..   +     -+...|.-+...|...++++.|..++
T Consensus       269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            22   2     35778999999999999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.71  E-value=8.8e-16  Score=124.79  Aligned_cols=237  Identities=8%  Similarity=-0.027  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      ...|..+..++...|++++|...++++.+  -.|.+..+|+.+..++...|+ +++|+..|+++.+.   +..+|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            45677888889999999999999999988  456677889999999999997 99999999999863   5678999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh-cCCh
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR-AGLL  196 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~  196 (293)
                      ++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+.  -+-+...|+.+..+|.. .|..
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999987654 7889999999999999999999999999973  24467889999999999 6665


Q ss_pred             HHH-----HHHHHhC-CCCc-hHhHHHHHHHHHHhcC--ChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC-------
Q 036775          197 EEA-----EAFIREM-PIEA-EWSVWGALLNACRIHR--NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD-------  260 (293)
Q Consensus       197 ~~a-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------  260 (293)
                      ++|     +..+++. ...| +...|+.+...+...|  +.++|...++.+ +..+.++..+..+..+|.+.|       
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            887     4677766 4455 4557888888888877  688999999888 667888899999999998874       


Q ss_pred             --CHHHHHHHHHHH-HHcCCCCCCcccee
Q 036775          261 --RWEDANKIRDEI-RRMGLKKKTGCSWI  286 (293)
Q Consensus       261 --~~~~a~~~~~~m-~~~~~~p~~~~~~~  286 (293)
                        .+++|.++++++ .+  +.|....+|.
T Consensus       331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~  357 (382)
T 2h6f_A          331 EDILNKALELCEILAKE--KDTIRKEYWR  357 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence              358999999997 44  5676666664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=2e-14  Score=111.85  Aligned_cols=223  Identities=9%  Similarity=-0.088  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTV  115 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l  115 (293)
                      ++..+..+...+...|++++|...+++..+    +.+...+..+...|..    .+++++|.+.|++..+. +...+..+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l   80 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   80 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            556777888889999999999999999887    3455678889999999    99999999999998875 66788889


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775          116 ISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVV  187 (293)
Q Consensus       116 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  187 (293)
                      ...|..    .+++++|...|++..+.+   +...+..+...+..    .+++++|...|++..+ .+   +...+..+.
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg  153 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHH
Confidence            999999    999999999999999875   67788888888988    9999999999999987 33   566788888


Q ss_pred             HHHHh----cCChHHHHHHHHhCCCCchHhHHHHHHHHHHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc-
Q 036775          188 DMYGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG-  258 (293)
Q Consensus       188 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-  258 (293)
                      ..|..    .+++++|...|++.-...+...+..+...|..    .+++++|...+++..+..+  +..+..+..+|.+ 
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence            89998    99999999999988222355677778888888    9999999999999888765  5678888999998 


Q ss_pred             ---CCCHHHHHHHHHHHHHcC
Q 036775          259 ---ADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       259 ---~g~~~~a~~~~~~m~~~~  276 (293)
                         .+++++|.+.|++..+.|
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCcccCHHHHHHHHHHHHHcC
Confidence               999999999999987755

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.70  E-value=5.6e-16  Score=118.30  Aligned_cols=202  Identities=14%  Similarity=0.054  Sum_probs=155.4

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      ..+...|..+...+...|++++|...|+++.+.  .+.+...+..+...+...|++++|...++.+.+  ..+.+..++.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~   95 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYY   95 (243)
T ss_dssp             ----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHH
Confidence            346677888888999999999999999999885  355678888899999999999999999999987  3455778889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL  159 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  159 (293)
                      .+...+...|++++|.+.++++.+.   +...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCC
Confidence            9999999999999999999988753   566788899999999999999999999987643 367888999999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE  211 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~  211 (293)
                      +++|...++.+.+.  .+.+..++..+..+|...|++++|...+++. ...|+
T Consensus       175 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          175 LDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            99999999999863  3455778999999999999999999999988 33443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=4.5e-15  Score=117.42  Aligned_cols=246  Identities=11%  Similarity=0.055  Sum_probs=134.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc------CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK------EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D   73 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~   73 (293)
                      +..+|..+...+...|++++|+.+|+++.+..      ..+.....+..+...+...|++++|...++.+....     +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            56678888888888999999998888887630      023334566667777777777777777777766521     1


Q ss_pred             -CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           74 -LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        74 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                       .+....++..+...|...|++++|...|++..+.                        ...............+..+..
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~  161 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKDHPDVAKQLNNLAL  161 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcCCCChHHHHHHHHHHH
Confidence             1223445566666666666666666666554421                        000000000112233444444


Q ss_pred             HHhcCCChhHHHHHHHHhhhhc-----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC---------Cc------
Q 036775          153 ACSHGGLVDQGLILFKAMSTVY-----EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI---------EA------  210 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~---------~~------  210 (293)
                      .+...|++++|..+++++.+..     +..| ...++..+..+|...|++++|...+++. ..         .+      
T Consensus       162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  241 (311)
T 3nf1_A          162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW  241 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence            4555555555555555444310     1011 2234455555555555555555555544 10         00      


Q ss_pred             -hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          211 -EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       211 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                       ....+..+...+...+.+..+...++......+....++..+..+|.+.|++++|.++|++..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             1112223333356677778888888888777777788899999999999999999999988765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.66  E-value=6.4e-15  Score=114.52  Aligned_cols=219  Identities=9%  Similarity=-0.074  Sum_probs=175.8

Q ss_pred             hcccCcchHHHHHHHHHHhhcCC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHH
Q 036775           52 CSSISALSFGQYVHSYISTRYDL--SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGR  126 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~  126 (293)
                      ....+++++|...++.+.+....  +.+..++..+...+...|++++|...|+++.+.   +..+|..+..++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            45668999999999999882111  235677889999999999999999999998753   5678999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      +|...|+++.+.... +..++..+...+.+.|++++|...++.+.+.   .|+..........+...|++++|...+++.
T Consensus        95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999886433 6788999999999999999999999999863   344444444555667789999999999776


Q ss_pred             -C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC----CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          207 -P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG----VSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       207 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                       . ..++...+ .+...+...++.+.|...++...+..+    .+..++..+..++.+.|++++|...|++..+.
T Consensus       171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence             2 22333333 466667888888889998888776553    23678999999999999999999999998764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=1.3e-13  Score=115.62  Aligned_cols=270  Identities=13%  Similarity=-0.016  Sum_probs=189.8

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----c--CCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---C-
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT----K--EAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRY---D-   73 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-   73 (293)
                      ....||.|-..+...|++++|++.|++..+.    .  ...| ...+|+.+..++...|++++|...+++..+..   . 
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3567999999999999999999999987542    1  0123 35688999999999999999999998876521   1 


Q ss_pred             --CCCchhHHHHHHHHHHHc--CCHHHHHHHHHHhhh--C-CcccHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775           74 --LSVSNLVGNAVINMYVKC--GDVGIAIQVFNMLAY--K-DMISWSTVISG---LAMNGCGRQALQLFSLMIINGVFPD  143 (293)
Q Consensus        74 --~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~  143 (293)
                        ......++..+..++.+.  +++++|++.|++..+  | +...+..+..+   +...++.++|++.+++..+.... +
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence              112344566666566654  469999999999875  3 34445555444   44567888999999888775433 4


Q ss_pred             HhHHHHHHHHHh----cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHH
Q 036775          144 DVTFIALISACS----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGA  217 (293)
Q Consensus       144 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~  217 (293)
                      ..++..+...+.    ..++.++|.+++++...  ..+.+..++..+...|...|++++|...+++. ...|+ ...+..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            555555544443    45678899999998876  23455677888999999999999999999887 44444 345555


Q ss_pred             HHHHHHh-------------------cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036775          218 LLNACRI-------------------HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL  277 (293)
Q Consensus       218 l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  277 (293)
                      +...|..                   .+..+.|...+++..+..|.+..++..+...+...|++++|.+.|++..+...
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            5444422                   12356677777777777788888888888888888888888888888776443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=4.2e-13  Score=106.34  Aligned_cols=235  Identities=6%  Similarity=-0.038  Sum_probs=181.3

Q ss_pred             chHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHccCCCchHHHHHHHHHHhc-------ccCcc-------hHHH
Q 036775            5 DVVSWTTMIGGYAER----GFC----EEAVSVFQEMEKTKEAEPNEATLVNVLSACS-------SISAL-------SFGQ   62 (293)
Q Consensus         5 ~~~~y~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~   62 (293)
                      +...|...+....+.    ++.    ++|..+|++....  .+.++..|..+...+.       +.|++       ++|.
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~   84 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence            456677777765554    233    6888999999886  3556677777777665       34776       8999


Q ss_pred             HHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Ccc-cHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775           63 YVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMI-SWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus        63 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      .++++..+  .+.| +...|..++..+.+.|++++|.++|++..+.   +.. +|..++..+.+.|++++|..+|++..+
T Consensus        85 ~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           85 NIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999876  3344 5568899999999999999999999998863   333 799999999999999999999999987


Q ss_pred             CCCCCcHhHHHHHHHHH-hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCch-
Q 036775          138 NGVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P---IEAE-  211 (293)
Q Consensus       138 ~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---~~~~-  211 (293)
                      .+. ++...|....... ...|+.++|..+|+...+.  .+.+...|..++..+.+.|++++|..+|++. .   ..|+ 
T Consensus       163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~  239 (308)
T 2ond_A          163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence            643 3445554443332 2379999999999999863  2346678888999999999999999999988 2   3543 


Q ss_pred             -HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775          212 -WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       212 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                       ...|..++......|+.+.|..+++++.+..|.+.
T Consensus       240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence             45788888888899999999999999988877544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.65  E-value=1.9e-12  Score=109.31  Aligned_cols=254  Identities=8%  Similarity=-0.081  Sum_probs=164.7

Q ss_pred             chHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCC
Q 036775            5 DVVSWTTMIGGYAE----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSV   76 (293)
Q Consensus         5 ~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~   76 (293)
                      |...+..+-..|..    .+++++|+..|++..+.|    +...+..+...+..    .++.++|.+.|+...+ .+   
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG---  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---
Confidence            55566666667776    778888888888877653    34455556666666    7778888888887766 32   


Q ss_pred             chhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHH
Q 036775           77 SNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTF  147 (293)
Q Consensus        77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~  147 (293)
                      +...+..|...|..    .+++++|.++|++..+. +...+..+...|..    .++.++|.+.|++..+.|   +...+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~  186 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC  186 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            45556667777777    67788888888777655 45566667777766    667778888877777654   45566


Q ss_pred             HHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCchHhHHHHHH
Q 036775          148 IALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGALL  219 (293)
Q Consensus       148 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~  219 (293)
                      ..+...|..    .++.++|.+.|+...+ .+   +...+..+...|..    .+++++|..+|++.-...+...+..+.
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  262 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666665    6777777777777765 22   34456666666665    667777777777662223344444555


Q ss_pred             HHHHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHc
Q 036775          220 NACRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA-----DRWEDANKIRDEIRRM  275 (293)
Q Consensus       220 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~  275 (293)
                      ..|..    .++.++|...+++..+.+  ++..+..|...|...     +++++|.++|++..+.
T Consensus       263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~  325 (490)
T 2xm6_A          263 YILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ  325 (490)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence            55555    666777777776665543  334555566666555     6667777666665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=1.4e-14  Score=105.92  Aligned_cols=171  Identities=9%  Similarity=0.000  Sum_probs=114.7

Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      ..+|..+...+...|++++|++.|++..+..+. +..++..+..++.+.|++++|...++....  ..+.+...+..+..
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence            345666666666666666666666666655332 456666666667777777777777766664  22334455666666


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775          189 MYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN  266 (293)
Q Consensus       189 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  266 (293)
                      .+...++++.|...+++. ...| +...+..+...+...|++++|...+++..+..|.++.+|..+..+|.+.|++++|.
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            677777777777777666 2223 34456666777777788888888888888878888888888888888888888888


Q ss_pred             HHHHHHHHcCCCCCCccc
Q 036775          267 KIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       267 ~~~~~m~~~~~~p~~~~~  284 (293)
                      +.|++..+  +.|+...+
T Consensus       162 ~~~~~al~--~~p~~a~~  177 (184)
T 3vtx_A          162 KYFKKALE--KEEKKAKY  177 (184)
T ss_dssp             HHHHHHHH--TTHHHHHH
T ss_pred             HHHHHHHh--CCccCHHH
Confidence            88887765  34444333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=5e-15  Score=124.36  Aligned_cols=208  Identities=8%  Similarity=-0.104  Sum_probs=178.3

Q ss_pred             chHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHH
Q 036775           58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFS  133 (293)
Q Consensus        58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~  133 (293)
                      ++.+...++....  ..+.+...+..+...+...|++ ++|++.|++..+.   +..+|..+..+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4555556665443  3445778889999999999999 9999999998753   46689999999999999999999999


Q ss_pred             HHHhCCCCCcHhHHHHHHHHHhcC---------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc--------CCh
Q 036775          134 LMIINGVFPDDVTFIALISACSHG---------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA--------GLL  196 (293)
Q Consensus       134 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~  196 (293)
                      +..+..  |+...+..+...+...         |++++|...+++..+.  .+.+...|..+..+|...        |++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            998864  6678899999999999         9999999999999873  244577899999999998        999


Q ss_pred             HHHHHHHHhC-CCCc----hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          197 EEAEAFIREM-PIEA----EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       197 ~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      ++|+..|++. ...|    +...|..+..+|...|++++|...+++..+..|.+...+..+..++...|++++|.+.+.+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999998 4455    6678999999999999999999999999999999999999999999999999999876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.61  E-value=5.1e-12  Score=106.66  Aligned_cols=257  Identities=9%  Similarity=-0.020  Sum_probs=124.5

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCCc
Q 036775            6 VVSWTTMIGGYAE----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSVS   77 (293)
Q Consensus         6 ~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~   77 (293)
                      ...+..|-..|..    .+++++|++.|++....|    ++..+..+...+..    .+++++|...++...+ .+   +
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~  146 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---R  146 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---C
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---C
Confidence            3445555555555    566666666666665532    23333444444444    4566666666666554 22   3


Q ss_pred             hhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHH
Q 036775           78 NLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFI  148 (293)
Q Consensus        78 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~  148 (293)
                      ...+..|...|..    .++.++|.++|++..+. +...+..+...|..    .++.++|.+.|++..+.|   +...+.
T Consensus       147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  223 (490)
T 2xm6_A          147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL  223 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3444555555554    45566666666555443 34444555555554    455555555555554432   223333


Q ss_pred             HHHHHHhc----CCChhHHHHHHHHhhhhcCC---------------------------------CcchhHHHHHHHHHH
Q 036775          149 ALISACSH----GGLVDQGLILFKAMSTVYEI---------------------------------VPQTQHYACVVDMYG  191 (293)
Q Consensus       149 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~  191 (293)
                      .+...+..    .++.++|..+|+...+ .+.                                 ..+...+..+...|.
T Consensus       224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~  302 (490)
T 2xm6_A          224 HLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD  302 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333332    3444444444444443 110                                 012233344444444


Q ss_pred             hc-----CChHHHHHHHHhCCCCchHhHHHHHHHHHHhcC---ChhhchHHHHHHHhhcCCchhhHHHHHHHHhc----C
Q 036775          192 RA-----GLLEEAEAFIREMPIEAEWSVWGALLNACRIHR---NDEMFDPIRQELVNKKGVSVGTFALMSNTFAG----A  259 (293)
Q Consensus       192 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~  259 (293)
                      ..     +++++|..+|++.-...+...+..+...|...|   +.++|...+++..+.  .++..+..|...|..    .
T Consensus       303 ~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~  380 (490)
T 2xm6_A          303 KGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVK  380 (490)
T ss_dssp             HCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             cCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence            44     455555555544411122233344444444333   445555555555444  234455556666655    5


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 036775          260 DRWEDANKIRDEIRRMG  276 (293)
Q Consensus       260 g~~~~a~~~~~~m~~~~  276 (293)
                      +++++|.++|++..+.|
T Consensus       381 ~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          381 KDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhCC
Confidence            66666666666655543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=2.5e-13  Score=110.96  Aligned_cols=226  Identities=8%  Similarity=-0.068  Sum_probs=172.2

Q ss_pred             HHHHhcccCcchHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----------CcccHH
Q 036775           48 VLSACSSISALSFGQYVHSYISTRYDLSV----SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----------DMISWS  113 (293)
Q Consensus        48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~  113 (293)
                      ....+...|++++|...++...+.....+    ...++..+...|...|++++|...+++..+-          ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            44557889999999999999977322112    3456888999999999999999999988642          124788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CC-CcchhHHH
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EI-VPQTQHYA  184 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~  184 (293)
                      .+..+|...|++++|.+.|++..+.    +..+ ...++..+...|...|++++|...+++..+..   +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8999999999999999999988753    1111 12478888999999999999999999887521   22 33456788


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CC-----Cch-HhHHHHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775          185 CVVDMYGRAGLLEEAEAFIREM-PI-----EAE-WSVWGALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSN  254 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~-~~-----~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~  254 (293)
                      .+..+|.+.|++++|...+++. ..     .|. ...+..+...+...|+   .+.|..++++. ...+.....+..+..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            9999999999999999999887 11     222 2235566666888888   66666666655 112334567889999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH
Q 036775          255 TFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       255 ~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|...|++++|.+.+++..+
T Consensus       348 ~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.59  E-value=1.2e-12  Score=103.71  Aligned_cols=211  Identities=9%  Similarity=-0.040  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH-------cCCH-------HHHHHHHHHhhh---C-CcccHHHHHHHHH
Q 036775           59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVK-------CGDV-------GIAIQVFNMLAY---K-DMISWSTVISGLA  120 (293)
Q Consensus        59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~  120 (293)
                      ++|..+|+++.+  ..|.+...|..++..+..       .|++       ++|..+|++..+   | +...|..++..+.
T Consensus        33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            678889999887  456777888888877763       5886       999999999876   2 4457999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCc-Hh-HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH-hcCChH
Q 036775          121 MNGCGRQALQLFSLMIINGVFPD-DV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG-RAGLLE  197 (293)
Q Consensus       121 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~  197 (293)
                      +.|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+  ..+++...|........ ..|+.+
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999985  443 33 799999999999999999999999986  22344555554443322 379999


Q ss_pred             HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc--CC--chhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK--GV--SVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      +|..+|++. ...| +...|..++..+...|+.+.|..+|++.....  +|  ....|..++..+.+.|+.++|..++++
T Consensus       187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999988 3333 45678888889999999999999999999863  43  456889999999999999999999999


Q ss_pred             HHHc
Q 036775          272 IRRM  275 (293)
Q Consensus       272 m~~~  275 (293)
                      +.+.
T Consensus       267 a~~~  270 (308)
T 2ond_A          267 RFTA  270 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=6.5e-12  Score=107.07  Aligned_cols=152  Identities=9%  Similarity=0.023  Sum_probs=108.9

Q ss_pred             cCCHH-------HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-h-hHHHHHHHHHHh
Q 036775          122 NGCGR-------QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-T-QHYACVVDMYGR  192 (293)
Q Consensus       122 ~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~  192 (293)
                      .|+++       +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+   ..|+ . ..|..++..+.+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~  368 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARR  368 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHH
Confidence            56665       7777777776521222466777777777778888888888888775   2343 2 467777777777


Q ss_pred             cCChHHHHHHHHhC-CCCch-HhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          193 AGLLEEAEAFIREM-PIEAE-WSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       193 ~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      .|++++|..+|++. ...|+ ...|...... +...|+.+.|..+|+...+..|.++..|..++..+.+.|+.++|..+|
T Consensus       369 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          369 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            88888888888777 33332 2222222222 346889999999999998888888899999999999999999999999


Q ss_pred             HHHHHcC
Q 036775          270 DEIRRMG  276 (293)
Q Consensus       270 ~~m~~~~  276 (293)
                      ++....+
T Consensus       449 ~~al~~~  455 (530)
T 2ooe_A          449 ERVLTSG  455 (530)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhcc
Confidence            9988753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=5e-13  Score=97.52  Aligned_cols=163  Identities=12%  Similarity=-0.010  Sum_probs=105.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      ++..|..+-..|.+.|++++|++.|++..+..  +-+...+..+..++.+.|++++|...+.....  ..+.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence            45667777777777777777777777777642  33455666667777777777777777777665  334445555666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ...+...++++.|...+++..+.   +...+..+..++.+.|++++|++.|++..+.... +..+|..+..++.+.|+++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence            66666677777777766665532   3445566666666666666666666666654332 4555666666666666666


Q ss_pred             HHHHHHHHhhh
Q 036775          162 QGLILFKAMST  172 (293)
Q Consensus       162 ~a~~~~~~~~~  172 (293)
                      +|.+.|++..+
T Consensus       159 ~A~~~~~~al~  169 (184)
T 3vtx_A          159 EAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66666666654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.57  E-value=2.7e-13  Score=113.70  Aligned_cols=263  Identities=10%  Similarity=-0.070  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHccCCCch-HHHHHHHHHH---hcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            7 VSWTTMIGGYAER--GFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSA---CSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         7 ~~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      .+|+.+-.++...  +++++|++.|++..+.   .|+ +..+..+..+   +...++.++|.+.+++..+  -.|.+..+
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~p~~~~~  211 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYL  211 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HCSSCHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cCCcchHH
Confidence            4555555555544  5799999999999885   344 3444444433   4456777889999988877  33455666


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           81 GNAVINMYVKC----GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        81 ~~~l~~~~~~~----~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      +..+...+...    |++++|.+.+++..+.   +..++..+...+...|++++|...|++..+..+. +..++..+..+
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~  290 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC  290 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence            66666555554    5788999999987753   5567888999999999999999999999876433 45566666555


Q ss_pred             HhcC-------------------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh
Q 036775          154 CSHG-------------------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS  213 (293)
Q Consensus       154 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~  213 (293)
                      |...                   +..+.|...++...+.  .+.+...+..+...|...|++++|+..|++. ...|+..
T Consensus       291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            4321                   2356777788877752  2345567888999999999999999999987 3333322


Q ss_pred             ----HHHHHHHH-HHhcCChhhchHHHHHHHh------------------------hcCCchhhHHHHHHHHhcCCCHHH
Q 036775          214 ----VWGALLNA-CRIHRNDEMFDPIRQELVN------------------------KKGVSVGTFALMSNTFAGADRWED  264 (293)
Q Consensus       214 ----~~~~l~~~-~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~~~~li~~~~~~g~~~~  264 (293)
                          .+..+... ....|+.++|...+++..+                        ..|.++.+|..|..+|...|++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~  448 (472)
T 4g1t_A          369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ  448 (472)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                22222222 3567888888887776553                        346678899999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 036775          265 ANKIRDEIRRMGL  277 (293)
Q Consensus       265 a~~~~~~m~~~~~  277 (293)
                      |.+.|++..+.|-
T Consensus       449 A~~~y~kALe~~~  461 (472)
T 4g1t_A          449 ADEDSERGLESGS  461 (472)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999887543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=2.5e-12  Score=105.04  Aligned_cols=230  Identities=8%  Similarity=-0.054  Sum_probs=179.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccC---CCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-----chhHHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKE---AEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-----SNLVGN   82 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~   82 (293)
                      ....+...|++++|+..|++..+.-.   .++ ...++..+..++...|+++.|...+.+..+...-.+     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            44567788999999999999876411   122 346788888899999999999999999887322222     235678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhHHH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV-FPDDVTFI  148 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~  148 (293)
                      .+...|...|++++|+..|++..+.     +    ..++..+..+|...|++++|...|++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8999999999999999999988742     1    247888999999999999999999998762    33 33467888


Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhcC---CCcchhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCchHh-HHHHHHHH
Q 036775          149 ALISACSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGL---LEEAEAFIREMPIEAEWS-VWGALLNA  221 (293)
Q Consensus       149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~l~~~  221 (293)
                      .+...+.+.|++++|...+++..+...   .+.....+..+...|...|+   +++|..++++.+..|+.. .+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999998875221   11122345678888888999   999999999996555544 67778888


Q ss_pred             HHhcCChhhchHHHHHHHhh
Q 036775          222 CRIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       222 ~~~~~~~~~a~~~~~~~~~~  241 (293)
                      |...|+++.|...+++..+.
T Consensus       349 y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.55  E-value=2.6e-11  Score=98.59  Aligned_cols=263  Identities=11%  Similarity=-0.062  Sum_probs=188.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHccCCCchH----HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHH
Q 036775           11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGN   82 (293)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~   82 (293)
                      .....+...|++++|...+++..... ...+.    ..+..+...+...|+++.|...+++......-..+    ..++.
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34456678899999999999987753 11122    24556667788899999999999988762111122    22356


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC-----C------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--cHhHH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK-----D------MISWSTVISGLAMNGCGRQALQLFSLMIINGVF--P--DDVTF  147 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~  147 (293)
                      .+...+...|++++|...+++..+.     +      ...+..+...+...|++++|...+++.......  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            7888899999999999999887642     1      134566778899999999999999998754221  1  23567


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCch-----HhHHH
Q 036775          148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-----CVVDMYGRAGLLEEAEAFIREM-PIEAE-----WSVWG  216 (293)
Q Consensus       148 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~  216 (293)
                      ..+...+...|++++|...+++......-......+.     ..+..+...|++++|...+++. ...|.     ...+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7788889999999999999998875322111111121     2334577999999999999988 22221     22456


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcC-----Cc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKG-----VS-VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+...+...|++++|...++......+     ++ ..++..+..++...|+.++|...+++...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            677778999999999999988776431     12 23677788889999999999999988654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=2.1e-13  Score=114.54  Aligned_cols=208  Identities=13%  Similarity=0.000  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcc-hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV  100 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  100 (293)
                      ++++++.++.....  .+.+...+..+..++...|++ ++|.+.+++..+  ..+.+...+..+..+|.+.|++++|.+.
T Consensus        84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55666777766553  344678888899999999999 999999999988  3455678899999999999999999999


Q ss_pred             HHHhhh--CCcccHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC--------CChh
Q 036775          101 FNMLAY--KDMISWSTVISGLAMN---------GCGRQALQLFSLMIINGVFPDDVTFIALISACSHG--------GLVD  161 (293)
Q Consensus       101 ~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~  161 (293)
                      |++..+  |+...+..+..++...         |++++|.+.|++..+.... +...|..+..++...        |+++
T Consensus       160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            999986  4556788888899999         9999999999999887543 678899999999888        9999


Q ss_pred             HHHHHHHHhhhhcCCC---cchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHH
Q 036775          162 QGLILFKAMSTVYEIV---PQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQ  236 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~  236 (293)
                      +|...|++..+. . +   .+...|..+..+|...|++++|...|++. ...|+ ...+..+...+...|+.++|...+.
T Consensus       239 ~A~~~~~~al~~-~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKV-D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHH-C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh-C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999873 1 2   36788999999999999999999999998 44454 4467778888888888877776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=1.9e-13  Score=112.57  Aligned_cols=231  Identities=12%  Similarity=-0.016  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---------C
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK---------D  108 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~  108 (293)
                      ...+..+...+...|++++|...++.+.+ . .+.+.    .++..+...|...|++++|...+++..+.         .
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQ-A-GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-h-cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            34455566778899999999999999988 3 22232    46788999999999999999999987642         3


Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhHHHHHHHHHhcCCC-----------------hhHHHHH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV-FPDDVTFIALISACSHGGL-----------------VDQGLIL  166 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~  166 (293)
                      ..++..+...+...|++++|...|++..+.    +- .....++..+...+...|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            457888999999999999999999987653    11 1234578888888999999                 9999999


Q ss_pred             HHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---h----HhHHHHHHHHHHhcCChhhchHH
Q 036775          167 FKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---E----WSVWGALLNACRIHRNDEMFDPI  234 (293)
Q Consensus       167 ~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~  234 (293)
                      +++..+..   +..+ ...++..+...|...|++++|...+++. ...+   +    ...+..+...|...|++++|...
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            88876421   1112 2357888999999999999999999887 1111   1    22677888889999999999999


Q ss_pred             HHHHHhhcCC------chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          235 RQELVNKKGV------SVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       235 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      +++..+..+.      ...++..+...+...|++++|.+++++..+
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9988875532      256788999999999999999999998765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=1.4e-11  Score=104.93  Aligned_cols=209  Identities=9%  Similarity=-0.019  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHHH-------cCCHH-------HHHHHHHHhhh---C-CcccHHHHHHHHHh
Q 036775           60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVK-------CGDVG-------IAIQVFNMLAY---K-DMISWSTVISGLAM  121 (293)
Q Consensus        60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~  121 (293)
                      .+..+|++...  ..|.+..+|..++..+.+       .|+++       +|..+|++..+   | +...|..++..+.+
T Consensus       256 ~a~~~y~~al~--~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            34445555555  345566777777777775       68887       99999999875   3 46689999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH-HHhcCChHH
Q 036775          122 NGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM-YGRAGLLEE  198 (293)
Q Consensus       122 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  198 (293)
                      .|++++|..+|+++.+.  .|+  ...|...+..+.+.|++++|.++|+...+.  .+.+...|...... +...|+.++
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence            99999999999999985  443  357888888889999999999999999862  22233333333222 346899999


Q ss_pred             HHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          199 AEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       199 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      |..+|++. ...| +...|..++..+...|+.+.|..+|++.....+.++.    .|...+......|+.+.+.++++++
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 3344 4678888999999999999999999999987654444    7888888888999999999999988


Q ss_pred             HH
Q 036775          273 RR  274 (293)
Q Consensus       273 ~~  274 (293)
                      .+
T Consensus       490 ~~  491 (530)
T 2ooe_A          490 FT  491 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.53  E-value=9.1e-13  Score=108.06  Aligned_cols=235  Identities=10%  Similarity=-0.042  Sum_probs=183.1

Q ss_pred             CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------
Q 036775           38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGNAVINMYVKCGDVGIAIQVFNMLAYK------  107 (293)
Q Consensus        38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------  107 (293)
                      ..+....+......+...|++++|...++.+.+ . .+.+    ..++..+...|...|++++|...+++..+.      
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   82 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQ-V-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD   82 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-c-CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence            345556667777889999999999999999988 3 2223    356788999999999999999999887532      


Q ss_pred             ---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CcHhHHHHHHHHHhcCCC--------------------
Q 036775          108 ---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV----F-PDDVTFIALISACSHGGL--------------------  159 (293)
Q Consensus       108 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~ll~~~~~~~~--------------------  159 (293)
                         ...++..+...+...|++++|...+++..+...    . ....++..+...+...|+                    
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~  162 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA  162 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence               245788889999999999999999998865311    1 114478888888999999                    


Q ss_pred             hhHHHHHHHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC----CCCch----HhHHHHHHHHHHhcCC
Q 036775          160 VDQGLILFKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE----WSVWGALLNACRIHRN  227 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~  227 (293)
                      +++|...+++..+..   +..+ ...++..+...|...|++++|...+++.    +..++    ...+..+...+...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            999999988876421   1112 2357888999999999999999999887    11111    2367778888999999


Q ss_pred             hhhchHHHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          228 DEMFDPIRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       228 ~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++.|...+++..+..+..      ..++..+...+...|++++|.+.+++..+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999999999887654322      56788999999999999999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=6.6e-13  Score=96.55  Aligned_cols=161  Identities=13%  Similarity=-0.014  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG  191 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (293)
                      |..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.  .+.+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            34444555555555555555555544322 24455556666666666666666666666542  2334455666666666


Q ss_pred             hcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          192 RAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       192 ~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      ..|++++|...+++. .. ..+...+..+...+...|+++.|...+++..+..|.++..+..+...+...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            667777777666665 11 2344556666666777777777777777777777777788888888888888888888888


Q ss_pred             HHHHHc
Q 036775          270 DEIRRM  275 (293)
Q Consensus       270 ~~m~~~  275 (293)
                      ++..+.
T Consensus       168 ~~~~~~  173 (186)
T 3as5_A          168 KKANEL  173 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            877663

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=5.5e-13  Score=106.28  Aligned_cols=230  Identities=12%  Similarity=-0.011  Sum_probs=178.0

Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---------Cc
Q 036775           43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------DM  109 (293)
Q Consensus        43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~  109 (293)
                      ..+......+...|++++|...++.+.+ . .+.+    ..++..+...|...|++++|.+.+++..+.         ..
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQ-V-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            3445556668899999999999999988 3 2223    356788999999999999999999887532         24


Q ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHhcCCC--------------------hhHHH
Q 036775          110 ISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPD----DVTFIALISACSHGGL--------------------VDQGL  164 (293)
Q Consensus       110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~  164 (293)
                      .++..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            5788889999999999999999998765311 112    3478888888999999                    99999


Q ss_pred             HHHHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC------Cc-hHhHHHHHHHHHHhcCChhhch
Q 036775          165 ILFKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI------EA-EWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       165 ~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------~~-~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      ..+++.....   +..+ ...++..+...|...|++++|...+++. ..      .+ ....+..+...+...|+++.|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9988875421   1112 2356788899999999999999999887 11      11 1236777888899999999999


Q ss_pred             HHHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          233 PIRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       233 ~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ..+++..+..+..      ..++..+...+...|++++|.+.+++..+
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999887654222      56788899999999999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=7e-12  Score=94.71  Aligned_cols=203  Identities=7%  Similarity=-0.050  Sum_probs=125.5

Q ss_pred             chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHH
Q 036775           40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVI  116 (293)
Q Consensus        40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li  116 (293)
                      .|+..+......+...|++++|...|+...+ ...+++...+..+..++...|++++|++.|++..+.   +..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            4556677777777777888888888887776 332256666666777777778888888777777654   334566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHH
Q 036775          117 SGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACV  186 (293)
Q Consensus       117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l  186 (293)
                      .++...|++++|...|++..+.... +.       ..|..+...+...|++++|...|++..+   ..|+   ...+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence            7777777777777777777664322 33       3466666666777777777777777764   1343   4566666


Q ss_pred             HHHHHhcCCh--HHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775          187 VDMYGRAGLL--EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN  254 (293)
Q Consensus       187 ~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  254 (293)
                      ..+|...|+.  +++..+.     ..+...|....  ....+.++.|...+++..+..|.++.+...+..
T Consensus       160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  222 (228)
T 4i17_A          160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            6666554432  2221111     11122222222  233455677777777777777766665555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.50  E-value=1.6e-11  Score=100.08  Aligned_cols=192  Identities=9%  Similarity=-0.036  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC-----C-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK-----D-----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDV  145 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~  145 (293)
                      +..+...|...|++++|...+++..+-     +     ..+++.+..+|...|++++|.+.|++..+.    +..+ ...
T Consensus       144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  223 (378)
T 3q15_A          144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI  223 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444455555555554444443320     1     123444445555555555555555444321    1111 123


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CC--Cc-hHhHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PI--EA-EWSVW  215 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~~-~~~~~  215 (293)
                      ++..+..++...|++++|...+++..+..   +.+....++..+..+|.+.|++++|...+++.    ..  .| ....+
T Consensus       224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  303 (378)
T 3q15_A          224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF  303 (378)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44445555555555555555555554310   11222344555555555556655555555544    10  11 11223


Q ss_pred             HHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          216 GALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       216 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..+...+...++   ...|..+++... ..+.....+..+...|...|++++|.+.|++..
T Consensus       304 ~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          304 LFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            333333444444   344444443311 112223345566666666666666666666553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=2.4e-12  Score=93.56  Aligned_cols=162  Identities=14%  Similarity=0.070  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ...|..+...+...|++++|++.|+++.+.  .+.+...+..+...+...|++++|...++.+.+  ..+.+...+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a   83 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence            445666777778888888888888877664  234566677777777777778777777777766  2344556666777


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  162 (293)
                      ..+...|++++|.+.++++.+.   +...+..+..++...|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence            7777777777777777766542   344566666666666777777777766665432 245566666666666666666


Q ss_pred             HHHHHHHhhh
Q 036775          163 GLILFKAMST  172 (293)
Q Consensus       163 a~~~~~~~~~  172 (293)
                      |...++.+.+
T Consensus       163 A~~~~~~~~~  172 (186)
T 3as5_A          163 ALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.49  E-value=6.6e-13  Score=116.18  Aligned_cols=162  Identities=14%  Similarity=0.065  Sum_probs=100.5

Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      +...++.|...|.+.|++++|++.|++..+.   +..+|+.+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4566777777777777777777777776642   3456666777777777777777777776654332 45566666666


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +.+.|++++|++.|++..+.  -+-+...|+.+..+|...|++++|+..|++. ...|+ ...+..+...+...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            66777777777777666652  1223455666666666666666666666655 33332 33555555666666666666


Q ss_pred             hHHHHHHHhh
Q 036775          232 DPIRQELVNK  241 (293)
Q Consensus       232 ~~~~~~~~~~  241 (293)
                      ...++++.+.
T Consensus       165 ~~~~~kal~l  174 (723)
T 4gyw_A          165 DERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.48  E-value=2.5e-11  Score=110.03  Aligned_cols=233  Identities=11%  Similarity=0.050  Sum_probs=142.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ..+|..+..++...|++++|++.|.+.       -|...|.-++.+|.+.|++++|.+.+....+ ..  ++..+.+.++
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~La 1174 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELI 1174 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHH
Confidence            455666666677777777777666442       3445566666667777777777777766655 22  3333334466


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      .+|++.+++++...+.   ..++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+
T Consensus      1175 faYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1175 FALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence            6666666666433332   2334455556666677777777777777663         266667777777777777777


Q ss_pred             HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      .+++..       +..+|..+..+|...|++..|......+  ..+...+..++..|...|.+++|..+++......+..
T Consensus      1243 aarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1243 GARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             HHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence            666553       2356666666666677777666665543  2333445567777777777777777777776666666


Q ss_pred             hhhHHHHHHHHhcC--CCHHHHHHHH
Q 036775          246 VGTFALMSNTFAGA--DRWEDANKIR  269 (293)
Q Consensus       246 ~~~~~~li~~~~~~--g~~~~a~~~~  269 (293)
                      ...|.-|...+++.  ++..++.++|
T Consensus      1314 ~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A         1314 MGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            66666665555543  3344444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.47  E-value=5.7e-12  Score=97.92  Aligned_cols=234  Identities=11%  Similarity=0.046  Sum_probs=112.5

Q ss_pred             HHcCCHHHHHHHHHHHHHc-----c-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----CC-CCchhHHHHH
Q 036775           17 AERGFCEEAVSVFQEMEKT-----K-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----DL-SVSNLVGNAV   84 (293)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~-----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l   84 (293)
                      ...|++++|+..|++....     + ..+....++..+...+...|++++|...++.+.+..     +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456666666666665442     0 012234456666666677777777777766665521     11 2233445556


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                      ...|...|++++|.+.|++..+.                        +++......+....++..+...+...|++++|.
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHH------------------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666666554321                        000000000112334444555555555555555


Q ss_pred             HHHHHhhhhc-----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCch-HhHHHHHHHHHHhcCC
Q 036775          165 ILFKAMSTVY-----EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-P---------IEAE-WSVWGALLNACRIHRN  227 (293)
Q Consensus       165 ~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---------~~~~-~~~~~~l~~~~~~~~~  227 (293)
                      ..+++..+..     +..| ...++..+..+|...|++++|...+++. .         ..+. ...|..+...+...+.
T Consensus       148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (283)
T 3edt_B          148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK  227 (283)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence            5555554310     0011 2334555555566666666666555544 0         1111 1122222222222222


Q ss_pred             hhhchH------HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          228 DEMFDP------IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       228 ~~~a~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...+..      .++......+....++..+..+|...|++++|.++|++..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222222      11111112233455778888888888888888888887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=8.7e-12  Score=101.67  Aligned_cols=228  Identities=9%  Similarity=-0.001  Sum_probs=176.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-----chhHHHH
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-----SNLVGNA   83 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~   83 (293)
                      -..+...|++++|+..|++..+.....++    ..++..+..++...|+++.|...+.+..+...-.+     ...+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            34567889999999999998764211222    45677888889999999999999999877322212     2456788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhHHHH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMII-----NGVFPDDVTFIA  149 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~  149 (293)
                      +...|...|++++|.+.|++..+.     +    ..++..+..++...|++++|...|++..+     .... ...++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence            999999999999999999887642     2    34688899999999999999999999986     4332 4678888


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCC---CcchhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCchHh-HHHHHHHHH
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEI---VPQTQHYACVVDMYGRAGL---LEEAEAFIREMPIEAEWS-VWGALLNAC  222 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~l~~~~  222 (293)
                      +...+.+.|++++|...+++..+...-   +.....+..+...|...++   +.+|+..+++.+..|+.. .+..+...|
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            999999999999999999998863222   1123456666677777888   999999999986555443 566777889


Q ss_pred             HhcCChhhchHHHHHHHhh
Q 036775          223 RIHRNDEMFDPIRQELVNK  241 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~  241 (293)
                      ...|+++.|...+++..+.
T Consensus       347 ~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            9999999999999887653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.46  E-value=5.5e-12  Score=110.39  Aligned_cols=163  Identities=13%  Similarity=-0.069  Sum_probs=143.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +..+|+.|-..|.+.|++++|++.|++..+..  +-+...|..+..++.+.|++++|...|++..+  -.+.+...|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            57789999999999999999999999998852  34477899999999999999999999999987  345567889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ..+|.+.|++++|++.|++..+.   +..+|+.+..++...|++++|++.|++..+.... +...+..+..++...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence            99999999999999999998753   5678999999999999999999999999886443 5788999999999999999


Q ss_pred             HHHHHHHHhhh
Q 036775          162 QGLILFKAMST  172 (293)
Q Consensus       162 ~a~~~~~~~~~  172 (293)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=7.4e-12  Score=94.57  Aligned_cols=194  Identities=10%  Similarity=-0.013  Sum_probs=150.5

Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775           76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI  151 (293)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  151 (293)
                      .++..+......+...|++++|++.|++..+    ++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567788899999999999999999998875    45667777899999999999999999999886543 667889999


Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcch-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHH
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQT-------QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLN  220 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~  220 (293)
                      .++...|++++|...+++..+..  +.+.       ..|..+...+...|++++|+..|++. ...|+   ...|..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            99999999999999999998732  2334       45888888999999999999999988 66776   446777777


Q ss_pred             HHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      .|...|     ...++.+....+.+...|.....  ...+.+++|...+++..+  +.|+.
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~--l~p~~  213 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVT--LSPNR  213 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHH-----HHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh--cCCCC
Confidence            775544     34455555555555555554433  345678999999998877  34544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.43  E-value=5.1e-11  Score=108.04  Aligned_cols=237  Identities=14%  Similarity=0.073  Sum_probs=183.8

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .|...|..++.++.+.|++++|++.|...++..   +++.....++.+|++.++++....+.    .    .++...+..
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~ 1200 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQ 1200 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHH
Confidence            467788999999999999999999999887743   44433445888899998887544332    2    345566778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG  163 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  163 (293)
                      +...|...|++++|..+|...     ..|..+..++.+.|++++|.+.+++.      -+..+|..+-.+|...|++..|
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999986     48999999999999999999999987      3678999999999999999999


Q ss_pred             HHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh--cCChhhchHHHHHHH
Q 036775          164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI--HRNDEMFDPIRQELV  239 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~  239 (293)
                      ......+.      .+...+..++..|.+.|.+++|+.+++.. +..+ +...|.-+...|++  .++..++.+.|..-.
T Consensus      1270 ~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A         1270 QMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred             HHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            98766533      34556789999999999999999999877 5444 33456555555544  344444555554332


Q ss_pred             hhcC-----CchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          240 NKKG-----VSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       240 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      ...+     -+...|.-++..|.+.|+++.|...
T Consensus      1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            2222     3567899999999999999999854

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=1.3e-10  Score=91.30  Aligned_cols=155  Identities=8%  Similarity=-0.156  Sum_probs=72.6

Q ss_pred             hcccCcchHHHHHHHHHHhh---cCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHH
Q 036775           52 CSSISALSFGQYVHSYISTR---YDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISG  118 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~  118 (293)
                      +...|++++|...+.+..+.   .+.++. ..+++.+..+|.+.|++++|+..|++..+-     +    ..+++.+..+
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33445555555555544431   111111 334555555555555555555555554421     1    1245555555


Q ss_pred             HHhc-CCHHHHHHHHHHHHhCCCC----Cc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch-----hHHHHHH
Q 036775          119 LAMN-GCGRQALQLFSLMIINGVF----PD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-----QHYACVV  187 (293)
Q Consensus       119 ~~~~-~~~~~a~~~~~~m~~~g~~----p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~  187 (293)
                      |... |++++|+..|++..+....    +. ..++..+...+.+.|++++|...|++..+...-.+..     ..+..+.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            5553 5555555555555432100    00 2345555555555566666665555555411111111     1344455


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036775          188 DMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       188 ~~~~~~g~~~~a~~~~~~~  206 (293)
                      .++...|++++|...|++.
T Consensus       207 ~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            5555556666666555555

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=1.6e-10  Score=93.82  Aligned_cols=234  Identities=8%  Similarity=-0.054  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCC--C-c
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRY---DLS--V-S   77 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~   77 (293)
                      +++.+...+...|++++|.+.+++........++    ..++..+...+...|++++|...++...+..   +.+  | .
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            5667778889999999999999988663211112    2335566777889999999999999887622   221  2 3


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-hHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-VTFI  148 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~  148 (293)
                      ...+..+...+...|++++|...+++..+.        ...++..+...+...|++++|...+++.......++. ..+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  214 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  214 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence            345677888999999999999999987642        1235777888899999999999999998753212111 1121


Q ss_pred             -----HHHHHHhcCCChhHHHHHHHHhhhhcCCCc---chhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCchHh
Q 036775          149 -----ALISACSHGGLVDQGLILFKAMSTVYEIVP---QTQHYACVVDMYGRAGLLEEAEAFIREM-------PIEAEWS  213 (293)
Q Consensus       149 -----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~  213 (293)
                           ..+..+...|++++|...++..... ...+   ....+..+...+...|++++|...+++.       +..++..
T Consensus       215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  293 (373)
T 1hz4_A          215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN  293 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence                 2334477899999999999998752 2111   1234667888999999999999999876       2122232


Q ss_pred             -HHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          214 -VWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       214 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                       .+..+..++...|+.++|...+++.....
T Consensus       294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~  323 (373)
T 1hz4_A          294 RNLLLLNQLYWQAGRKSDAQRVLLDALKLA  323 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence             55566677899999999999998887644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.36  E-value=4.6e-10  Score=87.27  Aligned_cols=173  Identities=12%  Similarity=0.037  Sum_probs=94.9

Q ss_pred             HHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775           97 AIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus        97 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      |+..|++..+   ++..++..+..++...|++++|++++.+....|. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5555555543   2333344555666666666666666666655443 12445566666666666666666666666654


Q ss_pred             hcCCCc-----chhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-
Q 036775          173 VYEIVP-----QTQHYACVVDM--YGRAG--LLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK-  241 (293)
Q Consensus       173 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  241 (293)
                      .   .|     +..+...|..+  ....|  +..+|..+|+++ ...|+..+-..++.++.+.|++++|...++.+.+. 
T Consensus       165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            1   34     23344444444  22223  666666666666 33344233333344566666666666666655543 


Q ss_pred             ---------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          242 ---------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       242 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                               .|.++.+...+|......|+  +|.+++.++++
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence                     25566666555555555555  56666666655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=5.2e-12  Score=99.68  Aligned_cols=199  Identities=13%  Similarity=0.018  Sum_probs=123.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D   73 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~   73 (293)
                      ...++..+...|...|++++|...+++....      +..+.....+..+...+...|++++|...++.+.+..     +
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            4567888999999999999999999998764      2123346678888899999999999999999988731     2


Q ss_pred             C-CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 036775           74 L-SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMIING--  139 (293)
Q Consensus        74 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--  139 (293)
                      . +....++..+...+...|++++|.++|+++.+.           ...++..+..++...|++++|...|+++.+..  
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            2 234456788888899999999999988877642           22357777788888888888888888776421  


Q ss_pred             -----CCCcH-------hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775          140 -----VFPDD-------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE  205 (293)
Q Consensus       140 -----~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  205 (293)
                           ..+..       ..+......+...+.+.++...++....  ..+....++..+..+|.+.|++++|...|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 11111       1111112222233344444444444432  1122334455555555556666666555554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=4.9e-10  Score=93.47  Aligned_cols=185  Identities=12%  Similarity=0.007  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHhhhCC-cccH--HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcHhHHHH
Q 036775           80 VGNAVINMYVKCG---DVGIAIQVFNMLAYKD-MISW--STVISGLAMN----GCGRQALQLFSLMIINGVFPDDVTFIA  149 (293)
Q Consensus        80 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~--~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~  149 (293)
                      .+..|...|.+.|   +.++|++.|++..+.+ ....  ..+...|...    +++++|...|++.. .|   +...+..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence            5556666666666   6666666666665442 2222  4455555443    56666777666665 22   2333334


Q ss_pred             HHHH-H--hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCchHhHHHHHHHH
Q 036775          150 LISA-C--SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-----LLEEAEAFIREMPIEAEWSVWGALLNA  221 (293)
Q Consensus       150 ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~l~~~  221 (293)
                      +... +  ...++.++|...|++..+ .|   +...+..|...|. .|     ++++|..+|++.- ..+...+..|...
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence            4433 2  346677777777776665 23   4445556666665 34     6777777777766 4455555555555


Q ss_pred             HHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcC
Q 036775          222 CRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG----ADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       222 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  276 (293)
                      |..    ..+.++|...+++..+.+.  +.....|..+|..    ..+.++|..+|+...+.|
T Consensus       328 y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          328 YRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             HHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            544    3366677777766665443  3345555555553    446777777777666555

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=4e-11  Score=93.10  Aligned_cols=133  Identities=11%  Similarity=-0.019  Sum_probs=102.6

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D   73 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~   73 (293)
                      +..+|..+...|...|++++|+..|++....      +..+....++..+..++...|++++|...++++....     .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            4677889999999999999999999998764      2123345688889999999999999999999987721     1


Q ss_pred             -CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775           74 -LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus        74 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                       .+....++..+...|...|++++|...|++..+.           ...++..+..++...|++++|...|++..+
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             2334566788888888999999999888877642           134566777777777888888777777654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=1.5e-10  Score=90.93  Aligned_cols=186  Identities=10%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             HHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALIS  152 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~  152 (293)
                      .|...|++++|.+.|++..+-     +    ..+|+.+..+|...|++++|+..|++..+.    |-.+ -..++..+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666777776666655431     1    345666666777777777777766665532    1110 1245666666


Q ss_pred             HHhcC-CChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---H-----hHHHHH
Q 036775          153 ACSHG-GLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---W-----SVWGAL  218 (293)
Q Consensus       153 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~-----~~~~~l  218 (293)
                      .|... |++++|...|++..+...-..+    ..++..+...|.+.|++++|+..|++. ...|+   .     ..|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            66664 7777777777666542110001    235666666777777777777777665 11111   1     134555


Q ss_pred             HHHHHhcCChhhchHHHHHHHhhcCCchh-----hHHHHHHHHh--cCCCHHHHHHHHHHH
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKKGVSVG-----TFALMSNTFA--GADRWEDANKIRDEI  272 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~--~~g~~~~a~~~~~~m  272 (293)
                      ..++...|+++.|...+++..+..|....     .+..++.++.  ..+++++|.+.|+++
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            55566677777777777666654433222     2333444443  445666666666543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.30  E-value=2.1e-10  Score=88.43  Aligned_cols=103  Identities=11%  Similarity=0.010  Sum_probs=68.8

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVG   81 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~   81 (293)
                      .+...+-.+...+.+.|++++|+..|+++.+..+..|. ...+..+..++...|++++|...++...+... .+.....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            35556666677777888888888888888774311111 45666777777888888888888888776211 11223456


Q ss_pred             HHHHHHHHH--------cCCHHHHHHHHHHhhh
Q 036775           82 NAVINMYVK--------CGDVGIAIQVFNMLAY  106 (293)
Q Consensus        82 ~~l~~~~~~--------~~~~~~A~~~~~~~~~  106 (293)
                      ..+..++..        .|++++|+..|+++.+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  125 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID  125 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            666777777        7778888888877764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=8.2e-11  Score=103.10  Aligned_cols=181  Identities=7%  Similarity=-0.051  Sum_probs=101.1

Q ss_pred             HHcCCHHHHHHHHHHHH--------HccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775           17 AERGFCEEAVSVFQEME--------KTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY   88 (293)
Q Consensus        17 ~~~~~~~~a~~~~~~m~--------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   88 (293)
                      ...|++++|++.+++..        +.  .+.+...+..+..++...|++++|...++++.+  ..+.+...+..+..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHH
Confidence            45566666666666665        21  133344555555666666666666666666655  2334455566666666


Q ss_pred             HHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775           89 VKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      ...|++++|++.|++..+.   +...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|..
T Consensus       478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665532   44556666666666666666 6666666554332 44556666666666666666666


Q ss_pred             HHHHhhhhcCCCcc-hhHHHHHHHHHHhcCC--------hHHHHHHHHhC
Q 036775          166 LFKAMSTVYEIVPQ-TQHYACVVDMYGRAGL--------LEEAEAFIREM  206 (293)
Q Consensus       166 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~  206 (293)
                      .|++..+   ..|+ ...+..+..++...++        +++|.+.+..+
T Consensus       556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            6666653   1232 3445555555544332        45555555555

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.30  E-value=1.2e-09  Score=91.22  Aligned_cols=257  Identities=9%  Similarity=-0.036  Sum_probs=185.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC---cchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS---ALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      ...+..|...|...+.++++......+.+.- ...++..+..+...+...|   +.++|.+.|+...+  .-+++...+.
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g~~~a~~~~  217 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS--RGTVTAQRVD  217 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TTCSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CCCHHHHHHH
Confidence            3455556666666665554444433332221 2233347777888888888   99999999999987  3455556556


Q ss_pred             HHHHHHHHc----CCHHHHHHHHHHhhhCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           83 AVINMYVKC----GDVGIAIQVFNMLAYKDMISWSTVISG-L--AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        83 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      .|...|...    +++++|.++|++....+...+..+... +  ...+++++|.+.|++..+.|   +...+..+...|.
T Consensus       218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          218 SVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            777777665    799999999999983377788888877 4  56899999999999999876   5556666666666


Q ss_pred             cCC-----ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCchHhHHHHHHHHHHh--
Q 036775          156 HGG-----LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI--  224 (293)
Q Consensus       156 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--  224 (293)
                       .|     +.++|...|+...     +.+...+..|...|..    ..+.++|..+|++.-...+......|...|..  
T Consensus       295 -~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~  368 (452)
T 3e4b_A          295 -EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGK  368 (452)
T ss_dssp             -HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCT
T ss_pred             -cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCC
Confidence             44     8999999999876     3456677788888877    34899999999998323344555666666653  


Q ss_pred             --cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          225 --HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       225 --~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                        ..+.+.|..+++...+.+.+........+......++..+|.++.++.++
T Consensus       369 g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              56889999999999988876655555555555666788888888887655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=1.9e-10  Score=78.72  Aligned_cols=127  Identities=13%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHh
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRI  224 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~  224 (293)
                      +..+...+...|++++|..+++.+.+.  .+.+...+..+...+...|++++|..+++++ .. ..+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            334444445555555555555555431  1223344555555555555555555555554 11 1233445556666666


Q ss_pred             cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      .|+++.|...++++.+..|.+..++..+...+.+.|++++|.+.++++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777777777777777666667777788888888888888888888877653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=1.8e-10  Score=88.84  Aligned_cols=64  Identities=13%  Similarity=-0.035  Sum_probs=43.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHHHHHHHHHhc----------CChhhchHHHHHHHhhcCCchh
Q 036775          184 ACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIH----------RNDEMFDPIRQELVNKKGVSVG  247 (293)
Q Consensus       184 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~  247 (293)
                      ..+...|.+.|++++|+..|++. ...|+    ...+..+..+|...          |++++|...++++.+..|.++.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            45677788888888888888776 22232    33566666666654          7778888888888887776643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=2.7e-10  Score=77.88  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..+...+...|++++|..+|+++.+..  +.+...+..+...+...|++++|...++.+..  ..+.+...+..+..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHH
Confidence            356677777788888888888888876642  33455666666667777777777777777765  23344555566666


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      .+...|++++|.+.++++.+.   +..++..+...+...|++++|...++++..
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666666665432   334455555555666666666666655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.25  E-value=7.9e-11  Score=103.22  Aligned_cols=169  Identities=9%  Similarity=-0.100  Sum_probs=121.9

Q ss_pred             HHcCCHHHHHHHHHHhh--------h---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775           89 VKCGDVGIAIQVFNMLA--------Y---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG  157 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  157 (293)
                      ...|++++|++.+++..        +   .+...+..+..++...|++++|.+.|++..+.... +...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence            56778888888888776        2   25566777777888888888888888887765433 566777777778888


Q ss_pred             CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHH
Q 036775          158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIR  235 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~  235 (293)
                      |++++|...|++..+.  -+.+...+..+..+|.+.|++++ +..|++. ...| +...|..+..++...|++++|...+
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888887752  13345667778888888888888 7777776 3344 4456777777788888888888888


Q ss_pred             HHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          236 QELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      ++..+..|.+...+..+..++...|+
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCC
Confidence            88877777777778777777766554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.25  E-value=5.4e-09  Score=90.71  Aligned_cols=233  Identities=5%  Similarity=-0.085  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHH-HHHHHHHhhcCCCCch
Q 036775            7 VSWTTMIGGYAERG-------FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ-YVHSYISTRYDLSVSN   78 (293)
Q Consensus         7 ~~y~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~   78 (293)
                      ..|...+..--..+       ..+.+..+|++....  .+-+...|......+...|+.+.|. .+++....  .+|.+.
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~--~~P~s~  378 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ--CIPNSA  378 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hCCCCH
Confidence            45666665433322       134567789998876  5667888888888888889999996 99999987  567788


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhh-------------CC------------cccHHHHHHHHHhcCCHHHHHHHHH
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAY-------------KD------------MISWSTVISGLAMNGCGRQALQLFS  133 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~  133 (293)
                      ..|...+....+.|++++|.++|+++.+             |+            ..+|...++...+.|+.+.|..+|.
T Consensus       379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8888899999999999999999998874             21            2358888888888999999999999


Q ss_pred             HHHhC-CCCCcHhHHHHHHHHHhc-CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc
Q 036775          134 LMIIN-GVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA  210 (293)
Q Consensus       134 ~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~  210 (293)
                      +..+. +. +....|......-.+ .++.+.|.++|+...+.  ++-+...+...++.....|+.+.|..+|++. ...|
T Consensus       459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            99876 22 123334333322233 35599999999999873  4445666778888888899999999999997 3333


Q ss_pred             ----hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775          211 ----EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       211 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                          ....|...+.--...|+.+.+..+.+++.+..|.+.
T Consensus       536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence                345788888888899999999999999999887653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.23  E-value=1.4e-09  Score=81.92  Aligned_cols=182  Identities=9%  Similarity=-0.115  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDM----ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VTFIA  149 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~  149 (293)
                      ...+..+...+.+.|++++|+..|+++.+  |+.    ..+..+..++.+.|++++|...|+++.+.......  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34556677788888999999999998875  322    35777888889999999999999998875433111  13334


Q ss_pred             HHHHHhc------------------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCch
Q 036775          150 LISACSH------------------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE  211 (293)
Q Consensus       150 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  211 (293)
                      +..++..                  .|+.++|...|+.+.+.  .+-+...+........-.+..               
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~---------------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL---------------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence            4444433                  45677777777777652  222222222211110000000               


Q ss_pred             HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          212 WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV---GTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      ......+...|...|+++.|...++.+.+..|.++   ..+..+..++.+.|++++|.+.++.+...+
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            00112345568899999999999999999887765   568889999999999999999999888754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.22  E-value=3.8e-09  Score=82.17  Aligned_cols=180  Identities=8%  Similarity=-0.011  Sum_probs=134.1

Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775           61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DMISWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                      +...+++..+ .+ +++......+..++...|++++|++++.+....     +...+..+++.+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4455555544 22 455666678889999999999999999998654     3456778899999999999999999999


Q ss_pred             HhCCCCC-----cHhHHHHHHHHHh--c--CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          136 IINGVFP-----DDVTFIALISACS--H--GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       136 ~~~g~~p-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .+.  .|     +..+...+..++.  .  .++..+|..+|+++.+.   .|+..+...++.++.+.|++++|.+.++.+
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            875  55     3666677776633  2  34899999999999752   355333344555899999999999999876


Q ss_pred             -CC-----------CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775          207 -PI-----------EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       207 -~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  249 (293)
                       ..           ..|..+...++......|+  .+.++++++.+..|.++.+.
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence             22           3356666566666555676  88999999999998877554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.22  E-value=8.9e-10  Score=87.12  Aligned_cols=221  Identities=10%  Similarity=-0.031  Sum_probs=142.6

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHH
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA   97 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   97 (293)
                      ..|++++|.+++++..+..  +..         .+...++++.|...|...                ...|...|++++|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence            3577888999988887642  111         011135666666666553                3456677888888


Q ss_pred             HHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHH
Q 036775           98 IQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQG  163 (293)
Q Consensus        98 ~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a  163 (293)
                      ...|.+..+-     +    ..+|+.+..+|...|++++|...|++..+.    |-.. ...++..+...|.. |++++|
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A  134 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA  134 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence            8887776532     1    346777788888888888888888876542    2111 13567777777877 888888


Q ss_pred             HHHHHHhhhhcCCC---c-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC------Cch-HhHHHHHHHHHHhcCChhhc
Q 036775          164 LILFKAMSTVYEIV---P-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI------EAE-WSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       164 ~~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------~~~-~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ...|++..+...-.   + ...++..+...|.+.|++++|+..|++. ..      .+. ...+..+...+...|+++.|
T Consensus       135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  214 (307)
T 2ifu_A          135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA  214 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            88888876522111   0 1356777888888889988888888876 11      111 12455566667778889999


Q ss_pred             hHHHHHHHhhcCCchh-----hHHHHHHHHhcCCCHHHHHHH
Q 036775          232 DPIRQELVNKKGVSVG-----TFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~  268 (293)
                      ...+++.. ..|....     ....++.++ ..|+.+.+.++
T Consensus       215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            88888887 5543222     244455555 46676666553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.20  E-value=1.6e-09  Score=80.57  Aligned_cols=186  Identities=12%  Similarity=-0.021  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ..+-.....+...|++++|+..|++..+.   .|+.. .|.. .. ..                  ............+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~~-~~------------------~~~~~~~~~~~~lg   61 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-TN-VD------------------KNSEISSKLATELA   61 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-HH-SC------------------TTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-hh-hc------------------chhhhhHHHHHHHH
Confidence            33444556778899999999999998884   45533 3332 00 00                  00111122334566


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC--h
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL--V  160 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~  160 (293)
                      .+|.+.|++++|+..|++..+.   +...|..+..++...|++++|...|++..+..+. +..++..+..++...|+  .
T Consensus        62 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence            7777777777777777776642   4556777777777777777777777777765432 45666666666554443  3


Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHH
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALL  219 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~  219 (293)
                      +.+...++....   ..|....+.....++...|++++|...|++. ...|+......+.
T Consensus       141 ~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~  197 (208)
T 3urz_A          141 KKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            334444444332   1222333444555666677777777777776 5666655444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.18  E-value=4.1e-09  Score=78.54  Aligned_cols=159  Identities=9%  Similarity=-0.120  Sum_probs=72.6

Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC----ChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG----LVDQGLILFKAMSTVYEIVPQTQHYA  184 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      ...+..+...|...+++++|.+.|++..+.|   +...+..+-..|.. +    +.++|...|+...+ .   .+...+.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~   89 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEI   89 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHH
Confidence            3344444444444444444444444444432   22333333333433 3    45555555555443 1   1233344


Q ss_pred             HHHHHHHh----cCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHh----cCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          185 CVVDMYGR----AGLLEEAEAFIREM-PIEAE---WSVWGALLNACRI----HRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       185 ~l~~~~~~----~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      .|...|..    .+++++|+.+|++. ...|.   ...+..|...|..    .++.+.|...+++..+. +.++..+..|
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L  168 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA  168 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence            44444444    44555555555554 22221   3344444444444    44555555555555544 2233345555


Q ss_pred             HHHHhcC-C-----CHHHHHHHHHHHHHcC
Q 036775          253 SNTFAGA-D-----RWEDANKIRDEIRRMG  276 (293)
Q Consensus       253 i~~~~~~-g-----~~~~a~~~~~~m~~~~  276 (293)
                      ..+|... |     ++++|.++|++..+.|
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5555432 2     5666666666555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.17  E-value=1.6e-09  Score=80.54  Aligned_cols=127  Identities=7%  Similarity=-0.077  Sum_probs=99.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG  194 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  194 (293)
                      +..++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+.  -+.+...+..+..+|...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence            888999999999999999999987544 6788999999999999999999999999873  2445678888988887665


Q ss_pred             C--hHHHHHHHHhCC-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          195 L--LEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       195 ~--~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      .  .+.+...++... ..|....+.....++...|++++|...+++..+..|.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4  455667777663 2333334444555677789999999999999988774

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=1.5e-10  Score=81.44  Aligned_cols=141  Identities=5%  Similarity=-0.125  Sum_probs=90.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      .+...|++++|+..+........ -+...+..+...|.+.|++++|.+.|++..+.  -+-+..+|..+..+|...|+++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence            33445666777776666544311 12344556666677777777777777777652  1334566777777777777777


Q ss_pred             HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchH-HHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDP-IRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      +|+..|++. ...| +...|..+...|...|+.+++.. ++++..+..|.++.+|......+...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            777777776 3444 34566777777777777765444 4577777777777788777777766664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=1.4e-09  Score=85.17  Aligned_cols=175  Identities=6%  Similarity=-0.138  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775           95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY  174 (293)
Q Consensus        95 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  174 (293)
                      +...+.+......+...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...++.+... 
T Consensus       103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-  180 (287)
T 3qou_A          103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-  180 (287)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence            33444444444334455666667777778888888888777765433 5566777777777888888888887777642 


Q ss_pred             CCCcchhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc--hhhH
Q 036775          175 EIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS--VGTF  249 (293)
Q Consensus       175 ~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~  249 (293)
                        .|+.... ......+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+  ...+
T Consensus       181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence              2443322 22233455666777777777666 3334 44567777777788888888888888877777655  6677


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          250 ALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       250 ~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..++..+...|+.++|...+++-.
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHH
Confidence            888888888888888777776543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.15  E-value=3.5e-08  Score=77.33  Aligned_cols=148  Identities=7%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh--HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC-----
Q 036775          123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL-----  195 (293)
Q Consensus       123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----  195 (293)
                      +++++++++++++.+...+ +-.+|..-...+.+.|.++  ++++.++.+.+.  -+-|...|+.....+...++     
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence            3444444444444443322 3444444444444444444  444444444431  12233344433333333333     


Q ss_pred             -hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh-chHHHHHHHhhc---CCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          196 -LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM-FDPIRQELVNKK---GVSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       196 -~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                       ++++++.++++ ...| |...|+.+-..+...|+... +..+.+.+.+..   +.++..+..++.++.+.|+.++|.++
T Consensus       201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence             44444444444 1122 33344444444444444222 333444433322   44555666666666666666666666


Q ss_pred             HHHHH
Q 036775          269 RDEIR  273 (293)
Q Consensus       269 ~~~m~  273 (293)
                      ++.+.
T Consensus       281 ~~~l~  285 (306)
T 3dra_A          281 YDLLK  285 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.15  E-value=9.6e-10  Score=94.49  Aligned_cols=160  Identities=14%  Similarity=0.030  Sum_probs=122.1

Q ss_pred             cCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775           91 CGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF  167 (293)
Q Consensus        91 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  167 (293)
                      .|++++|++.|++..+.   +...|..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            47889999999988753   4567889999999999999999999999886543 6788999999999999999999999


Q ss_pred             HHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc---CChhhchHHHHHHHhhc
Q 036775          168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIH---RNDEMFDPIRQELVNKK  242 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~  242 (293)
                      ++..+.  .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |+.++|...+++..+..
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999873  2445678899999999999999999999988 3344 456788888889999   99999999999999998


Q ss_pred             CCchhhHHHHH
Q 036775          243 GVSVGTFALMS  253 (293)
Q Consensus       243 ~~~~~~~~~li  253 (293)
                      |.+...|..+.
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            88877777665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.15  E-value=2.6e-09  Score=83.59  Aligned_cols=163  Identities=6%  Similarity=-0.099  Sum_probs=121.9

Q ss_pred             CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH-HHH
Q 036775           74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT-FIA  149 (293)
Q Consensus        74 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~  149 (293)
                      .+.+...+..+...+.+.|++++|+..|++..+.   +...+..+...+.+.|++++|...++++....  |+... ...
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            4556667778888888899999999999888743   45678888888899999999999998886653  34332 222


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhc
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIH  225 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~  225 (293)
                      ....+...++.+.|...+++....  -+.+...+..+...|...|++++|...|+++ ...|+   ...+..+...+...
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            233356777788888888888762  2455677888888999999999999998888 33343   55788888888888


Q ss_pred             CChhhchHHHHHHHh
Q 036775          226 RNDEMFDPIRQELVN  240 (293)
Q Consensus       226 ~~~~~a~~~~~~~~~  240 (293)
                      |+.+.+...+++...
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            988888888876543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.14  E-value=9.1e-08  Score=74.95  Aligned_cols=231  Identities=8%  Similarity=-0.027  Sum_probs=179.1

Q ss_pred             HHcCC-HHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccC--cchHHHHHHHHHHhhcCCCCchhHHHHHHHHH----
Q 036775           17 AERGF-CEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSIS--ALSFGQYVHSYISTRYDLSVSNLVGNAVINMY----   88 (293)
Q Consensus        17 ~~~~~-~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----   88 (293)
                      .+.|. .++|+++++.+...   .|+ ...|+.--.++...+  +++++.++++.+..  ..|.+..+|+.-...+    
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~--~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL--DNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--HCTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH--HCcccHHHHHHHHHHHHHHH
Confidence            34444 56899999999984   455 456777777777777  99999999999988  4566666776554444    


Q ss_pred             HHc---CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-
Q 036775           89 VKC---GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGR--QALQLFSLMIINGVFPDDVTFIALISACSHGGL-  159 (293)
Q Consensus        89 ~~~---~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-  159 (293)
                      ...   +++++++++++++.+.   +..+|+.-.-++.+.|.++  ++++.++++.+..+. |-..|+.-...+.+.+. 
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred             HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence            555   7899999999999865   5567777777788889888  999999999988766 77888877777777776 


Q ss_pred             -----hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CchHhHHHHHHHHHHhcCCh
Q 036775          160 -----VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE-AEAFIREM-PI----EAEWSVWGALLNACRIHRND  228 (293)
Q Consensus       160 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~  228 (293)
                           ++++++.++.+..  -.+-|...|+.+...+.+.|+..+ +..+.+++ ..    ..+...+..+...|.+.|+.
T Consensus       197 ~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~  274 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY  274 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred             chhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence                 8899999999886  335677889989888988888544 55676666 22    23566788888899999999


Q ss_pred             hhchHHHHHHHh-hcCCchhhHHHHHHH
Q 036775          229 EMFDPIRQELVN-KKGVSVGTFALMSNT  255 (293)
Q Consensus       229 ~~a~~~~~~~~~-~~~~~~~~~~~li~~  255 (293)
                      ++|..+++.+.+ .+|.....|+..+..
T Consensus       275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          275 NESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence            999999999987 568777777766543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.14  E-value=5.7e-10  Score=78.39  Aligned_cols=139  Identities=6%  Similarity=-0.017  Sum_probs=77.6

Q ss_pred             HhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHH
Q 036775           51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQ  127 (293)
Q Consensus        51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~  127 (293)
                      .+...|++++|...++....  ..+.+...+..+...|.+.|++++|++.|++..+.   +..+|..+..++.+.|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            34455666666666665543  22223444555666666666666666666666532   44566666666666666666


Q ss_pred             HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH-HHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775          128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL-FKAMSTVYEIVPQTQHYACVVDMYGRAG  194 (293)
Q Consensus       128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g  194 (293)
                      |...|++..+.... +..++..+...+.+.|+.++|.+. ++...+.  .+-+..+|......+...|
T Consensus        84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence            66666666654332 455666666666666666554443 3555541  1223445555555554444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.12  E-value=1.1e-08  Score=76.91  Aligned_cols=184  Identities=9%  Similarity=-0.013  Sum_probs=112.5

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGN   82 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~   82 (293)
                      +...+..+...+.+.|++++|+..|+++.+..+..| ....+..+..++.+.|++++|...++.+.+...-.+.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            345566677788999999999999999987532222 23577778888999999999999999998722111211 2344


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036775           83 AVINMYVK------------------CGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVF  141 (293)
Q Consensus        83 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  141 (293)
                      .+..++.+                  .|+.++|...|+++.+.++   ..+.......          .+...+      
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH------
Confidence            45555544                  3556666666666654321   1221111000          000000      


Q ss_pred             CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       142 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                        ......+...+.+.|++++|...|+.+.+...-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence              00112345567778888888888888876321111 1245777788888888888888888776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=1.7e-09  Score=78.08  Aligned_cols=154  Identities=10%  Similarity=-0.012  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH-Hhc
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CSH  156 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~  156 (293)
                      ...+...+.+.|++++|...|++..+.   +...+..+..++...|++++|...|++......  +...+...... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence            345556666777777777777766532   455666677777777777777777776654322  33222211111 112


Q ss_pred             CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhcCChhhch
Q 036775          157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      .+...+|...+++..+.  .+.+...+..+..++...|++++|...|++. ...|+   ...+..+...+...|+.+.|.
T Consensus        87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            22233456666666541  1223556666666666677777776666665 33443   335555556666666666666


Q ss_pred             HHHHHH
Q 036775          233 PIRQEL  238 (293)
Q Consensus       233 ~~~~~~  238 (293)
                      ..+++.
T Consensus       165 ~~y~~a  170 (176)
T 2r5s_A          165 SKYRRQ  170 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.11  E-value=1.5e-09  Score=93.22  Aligned_cols=147  Identities=8%  Similarity=-0.103  Sum_probs=112.7

Q ss_pred             cCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHH
Q 036775           55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQL  131 (293)
Q Consensus        55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~  131 (293)
                      .|++++|.+.+++..+  ..+.+...+..+...+.+.|++++|.+.|++..+.   +...|..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999999876  34556788899999999999999999999998864   456788899999999999999999


Q ss_pred             HHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036775          132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLLEEAEAFIREM  206 (293)
Q Consensus       132 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~  206 (293)
                      |++..+.... +...+..+..++.+.|++++|.+.+++..+.  .+.+...+..+..++...   |+.++|.+.+++.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9999886443 6788999999999999999999999999873  234567888999999999   9999999999988

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.10  E-value=1e-08  Score=76.22  Aligned_cols=130  Identities=9%  Similarity=-0.014  Sum_probs=107.4

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...+..+...+...|++++|++.|++.     +.|+...+..+..++...|++++|...++...+  ..+.+...+..
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~   76 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHH
Confidence            34556667778888999999999999876     456788888999999999999999999999887  34566778889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---Cc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DM----------------ISWSTVISGLAMNGCGRQALQLFSLMIINGV  140 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  140 (293)
                      +..+|...|++++|.+.|++..+.   +.                ..+..+..++...|++++|...|++..+...
T Consensus        77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            999999999999999999988763   22                5678888889999999999999998887643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.3e-09  Score=78.68  Aligned_cols=159  Identities=9%  Similarity=0.023  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      .+..+...+...|++++|+..|++..+..  +.+...+..+..++...|++++|...++.+..   ..|+...+..+...
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~   82 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKL   82 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHH
Confidence            34555667777888888888888776642  34456677777777788888888888877655   12233322222111


Q ss_pred             -HHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhH
Q 036775           88 -YVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQ  162 (293)
Q Consensus        88 -~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~  162 (293)
                       +...++..+|...|++..+  | +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence             1122222345666665553  2 34556666666666777777777776666654332 23456666666666666666


Q ss_pred             HHHHHHHhh
Q 036775          163 GLILFKAMS  171 (293)
Q Consensus       163 a~~~~~~~~  171 (293)
                      |...|++..
T Consensus       163 A~~~y~~al  171 (176)
T 2r5s_A          163 IASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=2.4e-08  Score=74.35  Aligned_cols=174  Identities=10%  Similarity=-0.101  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CcccHHHHHHHHHhcC----CHHHHHHHHHHH
Q 036775           61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMNG----CGRQALQLFSLM  135 (293)
Q Consensus        61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m  135 (293)
                      |.+.|+...+ .   -+...+..|...|...+++++|+++|++..+. +...+..|...|.. +    ++++|.+.|++.
T Consensus         5 A~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            5 PGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             TTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            4444444444 1   34445555666666666666666666665544 44455555555555 4    666666666666


Q ss_pred             HhCCCCCcHhHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCC-cchhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036775          136 IINGVFPDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIV-PQTQHYACVVDMYGR----AGLLEEAEAFIREM  206 (293)
Q Consensus       136 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~  206 (293)
                      .+.|   +...+..+-..|..    .+++++|...|++..+ .+.. .+...+..|...|..    .+++++|..+|++.
T Consensus        80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            5543   34445555555554    5666666666666664 2211 014455666666666    56666676666666


Q ss_pred             -CCCchHhHHHHHHHHHHhc-C-----ChhhchHHHHHHHhhcC
Q 036775          207 -PIEAEWSVWGALLNACRIH-R-----NDEMFDPIRQELVNKKG  243 (293)
Q Consensus       207 -~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~  243 (293)
                       ....+...+..|...|... |     +.++|...+++..+.+.
T Consensus       156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence             2223334455555555432 2     66666666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.07  E-value=6.6e-09  Score=77.24  Aligned_cols=130  Identities=11%  Similarity=-0.050  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +..+...+...|++++|.+.|++...++..+|..+..++...|++++|...|++..+... .+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccH
Confidence            455666777788888888888887777777788888888888888888888888776543 2566777777888888888


Q ss_pred             hHHHHHHHHhhhhcC-------------CCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775          161 DQGLILFKAMSTVYE-------------IVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE  211 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~  211 (293)
                      ++|...|+...+...             ..| ....+..+..+|...|++++|...|++. ...|+
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            888888888775211             111 1256777788888888888888888776 44453

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.04  E-value=3.1e-08  Score=78.18  Aligned_cols=163  Identities=8%  Similarity=-0.043  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccC---CCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCCC-chh
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKE---AEP-NEATLVNVLSACSSISALSFGQYVHSYISTRY---DLSV-SNL   79 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~   79 (293)
                      .|+.....|...|++++|.+.|.+......   ..+ -..+|..+..++...|++++|...+++..+..   |.+. ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            455555666666666766666666544210   001 12355555666666666666666666655411   1111 123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-Hh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPD-DV  145 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~  145 (293)
                      ++..+...|.. |++++|+..|++..+-     +    ..+++.+...+.+.|++++|+..|++....    +..++ ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            44555555655 6666666666655421     0    234555555666666666666666655432    11111 12


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      ++..+..++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34444444555566666666665554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=4.5e-08  Score=76.73  Aligned_cols=159  Identities=6%  Similarity=-0.062  Sum_probs=83.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-----hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC--CCcc--hhHHH
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIINGVFPDD-----VTFIALISACSHGGLVDQGLILFKAMSTVYE--IVPQ--TQHYA  184 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~  184 (293)
                      ..+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+++..+...  ..+.  ..+++
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            3444555566666666666555443221110     1122333444555666666666665543111  0111  23556


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-------CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhH
Q 036775          185 CVVDMYGRAGLLEEAEAFIREM-------PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTF  249 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~  249 (293)
                      .+...|...|++++|...+++.       +..+  ...++..+...|...|++++|...+++..+..+      .-..+|
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            6666666666666666666554       1111  113555566666666666666666666554321      114556


Q ss_pred             HHHHHHHhcCCCHHHH-HHHHHHH
Q 036775          250 ALMSNTFAGADRWEDA-NKIRDEI  272 (293)
Q Consensus       250 ~~li~~~~~~g~~~~a-~~~~~~m  272 (293)
                      ..+..+|.+.|++++| ...+++.
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHH
Confidence            6777777777777777 5555554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=2.4e-07  Score=72.50  Aligned_cols=160  Identities=6%  Similarity=-0.079  Sum_probs=109.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHh----HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHH
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGV-FPDDV----TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYAC  185 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~  185 (293)
                      .+..+...|++++|..++++..+... .|+..    .+..+...+...+++++|...++.......-.++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35567777888888888888766422 22211    2334555666777888888888887752111222    235778


Q ss_pred             HHHHHHhcCChHHHHHHHHhC--------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHH
Q 036775          186 VVDMYGRAGLLEEAEAFIREM--------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFA  250 (293)
Q Consensus       186 l~~~~~~~g~~~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~  250 (293)
                      +..+|...|++++|...|++.        ...+. ..++..+...|...|++++|...+++..+..      ..-..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888888776        11122 2267777788888999999988888777643      11256789


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHH
Q 036775          251 LMSNTFAGADR-WEDANKIRDEIRR  274 (293)
Q Consensus       251 ~li~~~~~~g~-~~~a~~~~~~m~~  274 (293)
                      .+..++.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999994 6999999887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=3.7e-08  Score=77.19  Aligned_cols=160  Identities=11%  Similarity=-0.057  Sum_probs=109.1

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----Cc----ccHH
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNL----VGNAVINMYVKCGDVGIAIQVFNMLAYK-----DM----ISWS  113 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~  113 (293)
                      ..+..+...|++++|..+++...+.....|+..    .+..+...+...|++++|+..|++..+.     +.    .+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            345667778888888888888776333334422    3345666777777888888888877652     21    2577


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcc-hhHH
Q 036775          114 TVISGLAMNGCGRQALQLFSLMII----N-GVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQ-TQHY  183 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~  183 (293)
                      .+..+|...|++++|...|+++.+    . +..+. ..++..+...|.+.|++++|...+++..+..   +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            888888888888888888888763    1 12222 2477788888888888888888888776521   11122 4678


Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHhC
Q 036775          184 ACVVDMYGRAGL-LEEAEAFIREM  206 (293)
Q Consensus       184 ~~l~~~~~~~g~-~~~a~~~~~~~  206 (293)
                      ..+..+|.+.|+ +++|...+++.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHH
Confidence            888888888884 58887777665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.98  E-value=8e-08  Score=75.29  Aligned_cols=165  Identities=11%  Similarity=-0.028  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----  108 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----  108 (293)
                      ...+...+..+...|++++|.+.+....+.....++.    ..+..+...+...|++++|+..+++..+.     +    
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            4455566777778888888888887776621111111    22345666777788888888888877632     2    


Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCc-
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMII---N-GVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVP-  178 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-  178 (293)
                      ..+|+.+...|...|++++|...|++..+   . +..+  ...++..+...|...|++++|...+++..+..   +... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            23677888888888888888888888762   1 1111  12577888888889999999998888876521   1111 


Q ss_pred             chhHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036775          179 QTQHYACVVDMYGRAGLLEEA-EAFIREM  206 (293)
Q Consensus       179 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~  206 (293)
                      -..+|..+..+|.+.|++++| ...+++.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            156778888889999988888 6656554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.95  E-value=2.5e-09  Score=83.36  Aligned_cols=188  Identities=10%  Similarity=-0.085  Sum_probs=102.1

Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775           77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA  153 (293)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  153 (293)
                      +...+..+...+.+.|++++|+..|++..+  | +...|..+..++.+.|++++|...+++..+.... +...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344555666666777777777777766654  2 4455666667777777777777777776655332 45666666777


Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHH---HHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVD---MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE  229 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  229 (293)
                      +...|++++|...|+...+..   |+. ..+...+.   ...+...+..    ........+..... .+..+ ..|+.+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~-~l~~l-~~~~~~  152 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHS-YLTRL-IAAERE  152 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHH-HHHHH-HHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-HHHHH-HHHHHH
Confidence            777777777777777665421   211 01111111   1111111111    11112122222222 22222 256667


Q ss_pred             hchHHHHHHHhhcCCchhhHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 036775          230 MFDPIRQELVNKKGVSVGTFALMSNTFAGA-DRWEDANKIRDEIRR  274 (293)
Q Consensus       230 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~  274 (293)
                      .|...++...+..|.+......+...+.+. +++++|.++|.+..+
T Consensus       153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777766666666666655555555555554 667778888876654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=3e-08  Score=77.29  Aligned_cols=190  Identities=5%  Similarity=-0.108  Sum_probs=129.8

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...+..+...+...|++++|+..|++..+..  +.+...|..+..++.+.|++++|...++...+  ..+.+...+..
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~   77 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF   77 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            356778888999999999999999999998853  44677888899999999999999999999987  45567788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV  160 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  160 (293)
                      +..+|...|++++|...|++..+.   +...+...+....+..   ++. -+..........+..... .+..+ ..|+.
T Consensus        78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~-~l~~l-~~~~~  151 (281)
T 2c2l_A           78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHS-YLTRL-IAAER  151 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHH-HHHHH-HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHH-HHHHH-HHHHH
Confidence            999999999999999999988643   2222222222222111   111 112222233333333333 33333 26888


Q ss_pred             hHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036775          161 DQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRA-GLLEEAEAFIREM  206 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~  206 (293)
                      ++|.+.++...+  . .|+ ......+...+.+. +.+++|.++|...
T Consensus       152 ~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          152 ERELEECQRNHE--G-HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHHTTTSGGGT--T-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhhc--c-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            899888888775  2 344 33444454455554 6788999999876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.92  E-value=4.3e-08  Score=65.71  Aligned_cols=98  Identities=16%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|.+.|+++.+..  +.+...+..+...+...|++++|...++.+.+  ..+.+..++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l   83 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHH
Confidence            35566667777777777777777777766542  33455566666666666666666666666655  233445555566


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      ...+...|++++|...|+++.+
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            6666666666666666665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.92  E-value=3.3e-08  Score=70.12  Aligned_cols=128  Identities=7%  Similarity=-0.092  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC  222 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~  222 (293)
                      ..+..+...+...|++++|...++...+.  .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34555555666667777777777666642  2334556666677777777777777777665 2223 344666666677


Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHH--HhcCCCHHHHHHHHHHHHH
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT--FAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...|+++.|...+++..+..|.+...+..+..+  +...|++++|.+.+.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            777777777777777777776666666443333  6677888888888876543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.91  E-value=4.3e-08  Score=72.08  Aligned_cols=127  Identities=13%  Similarity=-0.028  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhh------C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--cH
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAY------K---DMISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP--DD  144 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~  144 (293)
                      ++..+...+...|++++|...+++..+      .   ...++..+...+...|++++|...+++..+.    +..|  ..
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            334444444444444444444444332      0   1223444444455555555555555444321    1111  12


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+..+...+...|++++|...+++......-..+    ..++..+...+...|++++|.+.+++.
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            33444555555556666665555554431100011    123345555555566666655555443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.89  E-value=1e-07  Score=82.77  Aligned_cols=214  Identities=7%  Similarity=-0.088  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH-HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775           60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI-QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                      .+..+|++...  ..+-...+|...+..+.+.|+.++|. ++|++....   +...|...+....+.|++++|.++|+++
T Consensus       327 Rv~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34567888777  46667888888888888999999996 999988753   4445777888888999999999999998


Q ss_pred             HhCCC---------CCc------------HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc-
Q 036775          136 IINGV---------FPD------------DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA-  193 (293)
Q Consensus       136 ~~~g~---------~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  193 (293)
                      .+...         .|+            ...|...+....+.|..+.|..+|....+. ........|...+..-.+. 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhC
Confidence            86410         132            346888888888899999999999999862 1112233444433333444 


Q ss_pred             CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC---chhhHHHHHHHHhcCCCHHHHHHH
Q 036775          194 GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV---SVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       194 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      ++.+.|..+|+.. ...| +...|...+......|+.+.|..+|++.....++   ....|...+.--.+.|+.+.+.++
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4589999999988 2223 4445667777778889999999999999988763   456788889888999999999999


Q ss_pred             HHHHHHcC
Q 036775          269 RDEIRRMG  276 (293)
Q Consensus       269 ~~~m~~~~  276 (293)
                      .+++.+.-
T Consensus       564 ~~R~~~~~  571 (679)
T 4e6h_A          564 EKRFFEKF  571 (679)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99998753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.88  E-value=3.5e-06  Score=66.83  Aligned_cols=174  Identities=10%  Similarity=-0.036  Sum_probs=111.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-C
Q 036775           15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC-G   92 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~   92 (293)
                      ...+.+..++|+++++.+...+  +-+...|+.--.++...+ .++++.++++.+..  ..|.+..+|+.-...+.+. +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcC
Confidence            3344455567888888887742  333445666555555666 47888888888876  5566677777666666665 6


Q ss_pred             -CHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-
Q 036775           93 -DVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGR--------QALQLFSLMIINGVFPDDVTFIALISACSHGGL-  159 (293)
Q Consensus        93 -~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-  159 (293)
                       ++++++++++++.+.|.   .+|+.-.-++.+.|.++        ++++.++++.+..+. |...|+.....+.+.+. 
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence             77888888888876544   44554444444444444        777777777776554 66777777666666665 


Q ss_pred             ------hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775          160 ------VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL  195 (293)
Q Consensus       160 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  195 (293)
                            ++++++.+++...  -.+-|...|+.+-..+.+.|+
T Consensus       218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence                  5677777777665  224455666666656655554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.88  E-value=7.6e-08  Score=68.22  Aligned_cols=125  Identities=9%  Similarity=-0.086  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..+...+...|++++|...|++..+..  +.+...+..+..++...|++++|...++...+  ..+.+...+..+..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~   89 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence            345555566666677777777666665542  33455555566666666666666666666655  23334455555555


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC---CcccHHH--HHHHHHhcCCHHHHHHHHHHH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK---DMISWST--VISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~--li~~~~~~~~~~~a~~~~~~m  135 (293)
                      ++...|++++|.+.|++..+.   +...+..  +...+...|++++|.+.+...
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            666666666666666555432   2222211  222244445555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.87  E-value=7.8e-08  Score=65.36  Aligned_cols=114  Identities=7%  Similarity=-0.116  Sum_probs=73.7

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...|..+...+...|++++|++.|++..+.  .+.+...+..+..++...|++++|...++...+  ..+.+...+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~   89 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTR   89 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHH
Confidence            35666777777777777777777777777664  233556666677777777777777777777766  23445566666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAM  121 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~  121 (293)
                      +..++.+.|++++|.+.|++..+.   +...+..+..++..
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            777777777777777777666542   23344444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.86  E-value=1.9e-08  Score=70.45  Aligned_cols=96  Identities=10%  Similarity=-0.038  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          180 TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      ...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|...|++..+..|.++..|..+..+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            345666777777777777777777777 3334 45567777777777888888888888887777777778888888888


Q ss_pred             cCCCHHHHHHHHHHHHHc
Q 036775          258 GADRWEDANKIRDEIRRM  275 (293)
Q Consensus       258 ~~g~~~~a~~~~~~m~~~  275 (293)
                      ..|++++|.+.|++..+.
T Consensus       116 ~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888777663

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.85  E-value=5.9e-08  Score=65.04  Aligned_cols=109  Identities=13%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~  223 (293)
                      .+..+...+...|++++|.+.++++.+.  .+.+..++..+...+...|++++|..+++++ .. ..+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            3444444444444444444444444431  1223334444444444455555554444444 11 112334444444455


Q ss_pred             hcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775          224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF  256 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  256 (293)
                      ..|+++.|...++++.+..|.++..+..+...+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            555555555555555544444444444444333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=6.6e-07  Score=70.97  Aligned_cols=227  Identities=11%  Similarity=0.058  Sum_probs=161.4

Q ss_pred             cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhCC---cccHHHHHHHHHhc-C-CHH
Q 036775           53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKD---MISWSTVISGLAMN-G-CGR  126 (293)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~-~-~~~  126 (293)
                      .+.+..++|.++++.+..  -.|.+..+|+.--..+...| .+++++++++.+...+   ..+|+.-..++.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            344455689999999987  44556667887777778888 5999999999998764   45666666666666 6 899


Q ss_pred             HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh--------HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC---
Q 036775          127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--------QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL---  195 (293)
Q Consensus       127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  195 (293)
                      +++++++++.+...+ |-..|+.-...+.+.|.++        ++++.++++.+.  .+-|...|+.....+.+.++   
T Consensus       143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence            999999999987655 7778777666666666666        899999999872  34577788888888888776   


Q ss_pred             ----hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh--------------------hhchHHHHHHHhhc------C
Q 036775          196 ----LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND--------------------EMFDPIRQELVNKK------G  243 (293)
Q Consensus       196 ----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------~  243 (293)
                          ++++++.+++. ...| |...|+-+-..+.+.|..                    .....+...+....      .
T Consensus       220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence                67888888776 3344 555677666666655554                    22333333333222      4


Q ss_pred             CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      +++.....|+..|...|+.++|.++++.+.+ ...|-...||
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw  340 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYW  340 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHH
Confidence            6777889999999999999999999999864 3445444454

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.84  E-value=5.1e-08  Score=66.10  Aligned_cols=105  Identities=4%  Similarity=-0.161  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~  223 (293)
                      .+......+.+.|++++|++.|++..+.  .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            3444444555555555555555555431  1223444555555555555555555555544 2222 2334444444455


Q ss_pred             hcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          224 IHRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      ..|++++|...|++..+..|.+...+..|
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            55555555555555555554444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.84  E-value=8.5e-08  Score=64.98  Aligned_cols=94  Identities=7%  Similarity=0.002  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ..+......|.+.|++++|+..|++. ...| +...|..+..++...|+++.|...+++..+..|.++..|..+..++..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            45556666677777777777776665 3333 344566666666677777777777777666666666667777777777


Q ss_pred             CCCHHHHHHHHHHHHH
Q 036775          259 ADRWEDANKIRDEIRR  274 (293)
Q Consensus       259 ~g~~~~a~~~~~~m~~  274 (293)
                      .|++++|.+.|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            7777777777766655

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.83  E-value=8.7e-07  Score=73.21  Aligned_cols=190  Identities=11%  Similarity=-0.076  Sum_probs=125.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCc--------------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDM--------------------ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPD  143 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~  143 (293)
                      ...+.+.|++++|++.|.++.+.+.                    .++..+...|...|++++|.+.+.++...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3445666777777777776654211                    125667788888888888888887765421 1112


Q ss_pred             H----hHHHHHHHHHhcCCChhHHHHHHHHhhhh---cCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-------CC
Q 036775          144 D----VTFIALISACSHGGLVDQGLILFKAMSTV---YEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-------PI  208 (293)
Q Consensus       144 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~  208 (293)
                      .    .+.+.+-..+...|+.+.+..+++.....   .+..+ -..++..+...|...|++++|..++++.       ..
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    12223333345667888888888776542   12122 2456778888899999999998888776       11


Q ss_pred             Cc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc---CCc----hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          209 EA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK---GVS----VGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       209 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+ ...++..++..|...|+++.|..++++.....   +.+    ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            22 23467778888999999999999988776532   211    24567778888889999999888876644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.82  E-value=7.4e-08  Score=65.46  Aligned_cols=59  Identities=10%  Similarity=-0.093  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      |..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            333444444444444444444444433211 33334444444444444444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.82  E-value=4.8e-08  Score=71.83  Aligned_cols=152  Identities=11%  Similarity=-0.042  Sum_probs=83.6

Q ss_pred             HHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-cHhHHHHHHHHHhcCCCh
Q 036775           89 VKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMII----NGVFP-DDVTFIALISACSHGGLV  160 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~  160 (293)
                      ...|++++|.+.++.+..   ....++..+...+...|++++|...+++..+    .+..| ...++..+...+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            345677777773332222   2344566677777777777777777777654    11111 234566666667777777


Q ss_pred             hHHHHHHHHhhhhcCCCc-----chhHHHHHHHHHHhcCChHHHHHHHHhC------CCCch--HhHHHHHHHHHHhcCC
Q 036775          161 DQGLILFKAMSTVYEIVP-----QTQHYACVVDMYGRAGLLEEAEAFIREM------PIEAE--WSVWGALLNACRIHRN  227 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~--~~~~~~l~~~~~~~~~  227 (293)
                      ++|...+++..+...-.+     ....+..+...+...|++++|...+++.      ...+.  ..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            777777776654211111     1234566666777777777777766655      00111  1233445555666666


Q ss_pred             hhhchHHHHHHHh
Q 036775          228 DEMFDPIRQELVN  240 (293)
Q Consensus       228 ~~~a~~~~~~~~~  240 (293)
                      ++.|...+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=2e-08  Score=70.27  Aligned_cols=99  Identities=7%  Similarity=-0.120  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC  222 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~  222 (293)
                      ..+..+...+.+.|++++|...|+.....  -+.+...|..+..+|...|++++|+..|++. ...| +...+..+..++
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34444445555555555555555555531  1234444555555555555555555555554 2222 233444455555


Q ss_pred             HhcCChhhchHHHHHHHhhcCCc
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      ...|++++|...+++..+..|.+
T Consensus       100 ~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCC
Confidence            55555555555555555544433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.81  E-value=8.1e-08  Score=67.21  Aligned_cols=119  Identities=8%  Similarity=-0.016  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      ++.+.+.+...+-+       ++...   ..|+ ...+..+...+.+.|++++|...|+.+.+  -.|.+...|..+..+
T Consensus        12 ~~~l~~~~~~~~~l-------~~al~---l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~   79 (151)
T 3gyz_A           12 STAVIDAINSGATL-------KDINA---IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAI   79 (151)
T ss_dssp             HHHHHHHHHTSCCT-------GGGCC---SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCH-------HHHhC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            34455555444443       33333   3444 55777788889999999999999999987  456678888999999


Q ss_pred             HHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775           88 YVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIING  139 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  139 (293)
                      |...|++++|+..|++..+  | +...|..+..+|...|++++|...|++..+..
T Consensus        80 ~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998875  3 67789999999999999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.81  E-value=1.1e-07  Score=73.09  Aligned_cols=121  Identities=7%  Similarity=-0.114  Sum_probs=56.8

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCch----HhHHHHHHHHHHhcC
Q 036775          151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE----WSVWGALLNACRIHR  226 (293)
Q Consensus       151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~~~  226 (293)
                      ...+...|++++|.++|+.+..  + .|+......+...+.+.+++++|+..|+.....|+    ...+..+..++...|
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG  185 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA  185 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence            3344455555555555555543  1 12222333444455555555555555554422221    123444444455555


Q ss_pred             ChhhchHHHHHHHhhcC-C--chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          227 NDEMFDPIRQELVNKKG-V--SVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       227 ~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++++|...|++...+.. |  .+........++.+.|+.++|..+|+++..
T Consensus       186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555555555543321 2  223344445555555555555555555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.81  E-value=6.5e-08  Score=65.41  Aligned_cols=115  Identities=5%  Similarity=-0.102  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC  222 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~  222 (293)
                      ..+..+...+...|++++|...++...+.  .+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34444444445555555555555554431  1223344445555555555555555555544 1122 233444445555


Q ss_pred             HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      ...|+++.|...+++..+..|.+...+..+..++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555544443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=6.5e-08  Score=67.57  Aligned_cols=94  Identities=11%  Similarity=-0.066  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      ...+..+...+.+.|++++|+..|++....   +...|..+..++...|++++|...|++....... +...+..+..++
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence            344455555566666666666666655432   3445555555666666666666666665554322 344555555566


Q ss_pred             hcCCChhHHHHHHHHhhh
Q 036775          155 SHGGLVDQGLILFKAMST  172 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~  172 (293)
                      ...|++++|...|+...+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666665554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.80  E-value=3.9e-08  Score=70.83  Aligned_cols=122  Identities=12%  Similarity=0.102  Sum_probs=66.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH-HHhcCCh--H
Q 036775          121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM-YGRAGLL--E  197 (293)
Q Consensus       121 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  197 (293)
                      ..|++++|...+++..+... .+...+..+...+...|++++|...|+...+..  +.+...+..+..+ |...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence            44566666666666555432 245556666666666666666666666665421  2244455555555 5556665  6


Q ss_pred             HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775          198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS  245 (293)
Q Consensus       198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  245 (293)
                      +|...+++. ...| +...+..+...+...|+++.|...+++..+..|.+
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            666666655 2223 23445555555666666666666666666555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=1.2e-07  Score=64.06  Aligned_cols=97  Identities=9%  Similarity=-0.096  Sum_probs=48.2

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|+..|++....  .+.+...+..+..++...|++++|...++...+  ..+.+...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~   86 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHH
Confidence            3444555555555556666666665555543  122344444555555555555555555555544  122334444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHhh
Q 036775           85 INMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      ...+...|++++|...|++..
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHH
Confidence            445555555555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=8.2e-08  Score=73.72  Aligned_cols=182  Identities=8%  Similarity=-0.116  Sum_probs=89.9

Q ss_pred             HcCCHHHHHHHHHHHHHccCCCchHHHHHHH-------HHHhcccCcchHHHHHHHHHHhhcCCCCchh-----------
Q 036775           18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNV-------LSACSSISALSFGQYVHSYISTRYDLSVSNL-----------   79 (293)
Q Consensus        18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------   79 (293)
                      ..++...|.+.|.+.....  +-....|..+       ..++.+.++..++...+....   ++.|+..           
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence            5677788888888877742  3335566655       344444444444444444332   2333211           


Q ss_pred             -----------HHHHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--H
Q 036775           80 -----------VGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD--D  144 (293)
Q Consensus        80 -----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~  144 (293)
                                 ....+...+...|++++|.++|+.+...  +......+...+.+.+++++|+..|+...... .|.  .
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                       1123445555566666666666555432  11133444445555566666666665333211 110  1


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+..+-.++.+.|++++|+..|++... ....|.  .........++.+.|+.++|..+|+++
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2444455555556666666666665543 221132  223444455555556666666665555

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.77  E-value=6.3e-09  Score=76.61  Aligned_cols=169  Identities=5%  Similarity=-0.126  Sum_probs=81.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      +......|+++++.+.++.-.+.   ....+..+...+...|++++|...|++..+.... +. .+...           
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~-----------   77 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ-----------   77 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH-----------
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh-----------
Confidence            34444455555555555432221   3344556666666667777777777666653211 10 00000           


Q ss_pred             HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775          162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV  239 (293)
Q Consensus       162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  239 (293)
                          ....-..    ......+..+..+|...|++++|+..+++. ...| +...+..+..++...|+++.|...+++..
T Consensus        78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                0000000    001245556666666677777777666665 2223 34456666666777777777777777777


Q ss_pred             hhcCCchhhHHHHHHHHhcCCCHHHHH-HHHHHHHH
Q 036775          240 NKKGVSVGTFALMSNTFAGADRWEDAN-KIRDEIRR  274 (293)
Q Consensus       240 ~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~  274 (293)
                      +..|.+...+..+..++...++.+++. ..+..|..
T Consensus       150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777767777777777777766666666 44554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.76  E-value=3.2e-07  Score=75.80  Aligned_cols=194  Identities=8%  Similarity=-0.094  Sum_probs=140.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHccCCCch---------------HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc
Q 036775           13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN---------------EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS   77 (293)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~   77 (293)
                      ...+.+.|++++|++.|..+.+......+               ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            35678899999999999999875311111               124677888999999999999999988774333333


Q ss_pred             hh----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 036775           78 NL----VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV  140 (293)
Q Consensus        78 ~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~  140 (293)
                      ..    +.+.+...+...|+.++|..+++.....     +    ..++..+...+...|++++|..++.++...    +-
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            22    2334444555668999999999887632     2    236778899999999999999999987643    11


Q ss_pred             CC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          141 FP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       141 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      .| ...++..++..|...|++++|..+++......   +.++.  ...+..+...+...|++++|...|.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            22 24578889999999999999999998876522   11111  245667777888899999998877655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.76  E-value=2.2e-07  Score=66.79  Aligned_cols=117  Identities=7%  Similarity=-0.055  Sum_probs=66.7

Q ss_pred             cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHH-HHhcCCH--H
Q 036775           53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISG-LAMNGCG--R  126 (293)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~--~  126 (293)
                      ...|++++|...++...+  ..+.+...+..+...|...|++++|...|++..+  | +...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            345566666666666555  2344555666666666666666666666666553  2 34455555555 5566666  6


Q ss_pred             HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      +|...|++..+.... +...+..+...+...|++++|...++.+.+
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            666666666654322 345555666666666666666666666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.76  E-value=9.2e-06  Score=68.33  Aligned_cols=86  Identities=10%  Similarity=-0.160  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCCCc--hHhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775          185 CVVDMYGRAGLLEEAEAFIREMPIEA--EWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR  261 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  261 (293)
                      ..+..+.+.+..+.|..+|++.. .|  +...|...... +...++.+.|..+|+...+..|.++..+...+....+.|+
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence            33333444556666777776662 22  12222221111 1223356667777766666555444444444444444555


Q ss_pred             HHHHHHHHHH
Q 036775          262 WEDANKIRDE  271 (293)
Q Consensus       262 ~~~a~~~~~~  271 (293)
                      .+.|..+|+.
T Consensus       370 ~~~aR~l~er  379 (493)
T 2uy1_A          370 EENARALFKR  379 (493)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=1.2e-07  Score=75.89  Aligned_cols=92  Identities=7%  Similarity=-0.117  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ..|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+..++.+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            56666777777777777777777766 3233 445666677777777777777777777777777777777777777777


Q ss_pred             CCCHHHH-HHHHHHH
Q 036775          259 ADRWEDA-NKIRDEI  272 (293)
Q Consensus       259 ~g~~~~a-~~~~~~m  272 (293)
                      .|++++| .+.++.|
T Consensus       277 ~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          277 IRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            7777777 3355544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.74  E-value=1.6e-07  Score=75.14  Aligned_cols=127  Identities=9%  Similarity=-0.143  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---------------NLVGNAVINMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      ...+..+...+.+.|++++|...|++..+ . .+.+               ..++..+..+|.+.|++++|+..|++..+
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVS-W-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444455555555555555555555544 1 1111               35667777777777777777777777664


Q ss_pred             C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH-HHHHHHhh
Q 036775          107 K---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMS  171 (293)
Q Consensus       107 ~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~  171 (293)
                      .   +...|..+..++...|++++|...|++..+.... +...+..+..++.+.|+.++| ...++.|.
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   4456667777777777777777777777665332 455666677777777777766 34555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.69  E-value=1.8e-07  Score=64.75  Aligned_cols=99  Identities=11%  Similarity=-0.084  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR  223 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~  223 (293)
                      .+..+...+.+.|++++|...|+.....  -+.+...|..+..+|...|++++|...|++. ...| +...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            3444444555555555555555555541  1223444555555555555555555555554 2222 2234444555555


Q ss_pred             hcCChhhchHHHHHHHhhcCCch
Q 036775          224 IHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       224 ~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                      ..|+++.|...+++..+..|.++
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCc
Confidence            55555555555555555444333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.68  E-value=9.2e-06  Score=64.14  Aligned_cols=92  Identities=5%  Similarity=-0.103  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC--CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCC-HHHHHHH
Q 036775           58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGC-GRQALQL  131 (293)
Q Consensus        58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~-~~~a~~~  131 (293)
                      ++++..+++.+..  ..|.+..+|+.-.-.+.+.+  .+++++.+++++.+.   +..+|+.-.-++...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            3445555555544  33444445544444444444  255555555555543   23344444444444444 3555555


Q ss_pred             HHHHHhCCCCCcHhHHHHHHH
Q 036775          132 FSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus       132 ~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      ++++.+..+. |...|+....
T Consensus       168 ~~~~I~~~p~-N~SAW~~R~~  187 (331)
T 3dss_A          168 TDSLITRNFS-NYSSWHYRSC  187 (331)
T ss_dssp             HHHHHHHCSC-CHHHHHHHHH
T ss_pred             HHHHHHHCCC-CHHHHHHHHH
Confidence            5555554433 4444443333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.68  E-value=2.7e-07  Score=62.31  Aligned_cols=96  Identities=7%  Similarity=-0.147  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC  222 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~  222 (293)
                      ..+......+.+.|++++|...|++..+.  .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34445555555666666666666655541  1233455555555566666666665555555 2222 233455555555


Q ss_pred             HhcCChhhchHHHHHHHhhc
Q 036775          223 RIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~  242 (293)
                      ...|+++.|...+++..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhC
Confidence            55555555555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.68  E-value=1.8e-07  Score=61.29  Aligned_cols=95  Identities=12%  Similarity=0.002  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC--chhhHHHHHHHH
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV--SVGTFALMSNTF  256 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~  256 (293)
                      ..+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...+++..+..|.  +...+..+..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34455555666666666666666555 212 23445555666666666677777777666666666  666777777777


Q ss_pred             hcC-CCHHHHHHHHHHHHHc
Q 036775          257 AGA-DRWEDANKIRDEIRRM  275 (293)
Q Consensus       257 ~~~-g~~~~a~~~~~~m~~~  275 (293)
                      ... |++++|.+.+++....
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHhCCHHHHHHHHHHHhhc
Confidence            777 7777777777766553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.67  E-value=4.4e-08  Score=72.00  Aligned_cols=119  Identities=8%  Similarity=-0.092  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Cc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK---DM----------------ISWSTVISGLAMNGCGRQALQLFSLMIING  139 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  139 (293)
                      ..+..+...+.+.|++++|...|++..+.   +.                .+|..+..++...|++++|+..+++..+..
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34556666777777777777777776642   22                456666677777777777777777766653


Q ss_pred             CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHH
Q 036775          140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE  200 (293)
Q Consensus       140 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  200 (293)
                      . .+...+..+..++...|++++|...|+...+.  .+.+...+..+..++...++.+++.
T Consensus       119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            2 25566666777777777777777777776652  1234455566666666555555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.67  E-value=4.7e-07  Score=62.61  Aligned_cols=94  Identities=10%  Similarity=-0.218  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775           43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGL  119 (293)
Q Consensus        43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~  119 (293)
                      ..+..+...+...|++++|...|+....  ..|.+...|..+..+|.+.|++++|+..|++..+.   +...|..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3444445555666666666666666655  23445555566666666666666666666665532   444556666666


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 036775          120 AMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~  138 (293)
                      ...|++++|...|++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.66  E-value=6.3e-07  Score=63.57  Aligned_cols=94  Identities=11%  Similarity=-0.083  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      ...+..+...+.+.|++++|+..|++..+.   +...|..+..++.+.|++++|+..|++..+.... +...|..+..++
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344455555566666666666666655432   3445555556666666666666666665554322 455555666666


Q ss_pred             hcCCChhHHHHHHHHhhh
Q 036775          155 SHGGLVDQGLILFKAMST  172 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~  172 (293)
                      ...|++++|...|++..+
T Consensus        90 ~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHH
Confidence            666666666666666654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=8.3e-07  Score=58.64  Aligned_cols=90  Identities=16%  Similarity=-0.013  Sum_probs=35.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775          113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR  192 (293)
Q Consensus       113 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (293)
                      ..+...+...|++++|...|++....... +...+..+...+...|++++|...++...+.  .+.+...+..+..++..
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence            33344444444444444444444433211 3333344444444444444444444444331  11123333334444444


Q ss_pred             cCChHHHHHHHHh
Q 036775          193 AGLLEEAEAFIRE  205 (293)
Q Consensus       193 ~g~~~~a~~~~~~  205 (293)
                      .|++++|...+++
T Consensus        85 ~~~~~~A~~~~~~   97 (118)
T 1elw_A           85 LNRFEEAKRTYEE   97 (118)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            4444444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=8.8e-07  Score=60.55  Aligned_cols=98  Identities=6%  Similarity=-0.193  Sum_probs=61.9

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      .+...|..+...+...|++++|+..|+......  +.+...+..+..++...|++++|...++...+  ..+.+...+..
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~   82 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF   82 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHH
Confidence            456666667777777777777777777766642  33455666666666666677777666666665  22334555666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhh
Q 036775           84 VINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      +..++...|++++|...|++..
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Confidence            6666666666666666666554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=1.4e-06  Score=57.44  Aligned_cols=98  Identities=9%  Similarity=-0.129  Sum_probs=62.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|+..|++.....  +.+...+..+..++...|++++|...++...+  ..+.+...+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~   78 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence            44566667777777777777777777776642  33455666666666677777777777776665  233345555666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      ..++...|++++|.+.|++..+
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            6666666666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.63  E-value=6.1e-07  Score=61.35  Aligned_cols=98  Identities=10%  Similarity=-0.140  Sum_probs=52.8

Q ss_pred             cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHH
Q 036775          143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLN  220 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~  220 (293)
                      +...+..+...+...|++++|...|+...+.  .+.+...+..+..+|...|++++|...+++. ...| +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            4455555555666666666666666665541  1223445555555666666666666655555 2222 2334555555


Q ss_pred             HHHhcCChhhchHHHHHHHhhc
Q 036775          221 ACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      ++...|+++.|...+++..+..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHC
Confidence            5555555555555555555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=4.8e-07  Score=59.24  Aligned_cols=98  Identities=9%  Similarity=-0.074  Sum_probs=61.2

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC--chhHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV--SNLVGN   82 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~   82 (293)
                      +...|..+...+...|++++|+..|++..+..  +.+...+..+..++...|++++|...+++..+  ..+.  +...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~   80 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA   80 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence            45556666677777777777777777766642  33455566666666666677777666666655  2233  455556


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHhhh
Q 036775           83 AVINMYVKC-GDVGIAIQVFNMLAY  106 (293)
Q Consensus        83 ~l~~~~~~~-~~~~~A~~~~~~~~~  106 (293)
                      .+..++.+. |++++|.+.+++...
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            666666666 666666666665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.62  E-value=7.4e-07  Score=60.35  Aligned_cols=57  Identities=9%  Similarity=-0.046  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI  136 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~  136 (293)
                      .+..|...+.+.|++++|++.|++..+.   +...|+.+..+|...|++++|++.|++..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3444555555555555555555554431   33344445555555555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.60  E-value=1e-06  Score=61.71  Aligned_cols=99  Identities=10%  Similarity=-0.097  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----   77 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----   77 (293)
                      ..++..+...+...|++++|+..+++........++    ..++..+...+...|++++|...++...+.....++    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345666777777778888888877776553100011    124445555556666666666666555441110011    


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNML  104 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~  104 (293)
                      ..++..+...+...|++++|.+.+++.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            223344444455555555555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.2e-06  Score=59.07  Aligned_cols=96  Identities=9%  Similarity=-0.049  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      ...|..+...+.+.|++++|+..|++..+..  +.+...|..+..++...|++++|...++...+  -.+.+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg   79 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence            4455566666666677777777776666542  33445555556666666666666666666555  2233444555555


Q ss_pred             HHHHHcCCHHHHHHHHHHhh
Q 036775           86 NMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~  105 (293)
                      .++...|++++|...|++..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHH
Confidence            55555555555555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.60  E-value=1.4e-05  Score=63.05  Aligned_cols=222  Identities=7%  Similarity=-0.079  Sum_probs=152.9

Q ss_pred             ccCcch-HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC----------HHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775           54 SISALS-FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD----------VGIAIQVFNMLAYK---DMISWSTVISGL  119 (293)
Q Consensus        54 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~---~~~~~~~li~~~  119 (293)
                      +.|.++ +|.++.+.+..  -.|.+..+|+.--..+...+.          +++++.+++.+...   +..+|+.-..++
T Consensus        41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445544 67777777765  333344445443333332222          67888999888764   556777777777


Q ss_pred             HhcC--CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---
Q 036775          120 AMNG--CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL-VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---  193 (293)
Q Consensus       120 ~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  193 (293)
                      .+.+  ++++++++++++.+.... |-..|+.-...+...|. ++++++.++.+.+.  -+-|...|+.....+.+.   
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred             hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence            7777  489999999999988665 78888887777788888 58999999999972  345677787776666655   


Q ss_pred             -----------CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc-----------CChhhchHHHHHHHhhcCCchhhH
Q 036775          194 -----------GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIH-----------RNDEMFDPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       194 -----------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~  249 (293)
                                 +.++++++.++.. ...| |...|+-+-..+...           +..+++...++++.+..|.+..++
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l  275 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL  275 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence                       4577888888877 3344 445565444444333           356788888999998888887666


Q ss_pred             HHHHH---HHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          250 ALMSN---TFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       250 ~~li~---~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      ..++.   +....|..+++...+.++++  +.|-..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~  309 (331)
T 3dss_A          276 LTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA  309 (331)
T ss_dssp             HHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence            55443   23357888999999999886  444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.60  E-value=1e-06  Score=62.47  Aligned_cols=98  Identities=9%  Similarity=-0.084  Sum_probs=63.0

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+.+.|++++|++.|++..+..  +.+...|..+..++...|++++|...++...+  -.+.+...+..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l   85 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            45566666677777777777777777776642  33455666666666677777777777776665  233445566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      ..+|...|++++|...|++..+
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHH
Confidence            6666666666666666666653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=9.3e-07  Score=61.17  Aligned_cols=110  Identities=7%  Similarity=-0.169  Sum_probs=64.5

Q ss_pred             cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHH
Q 036775          143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWG  216 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~  216 (293)
                      +...+..+...+...|++++|...|+...+   ..|+    ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            445566666666666677777766666654   1233    455556666666666666666666655 2222 344555


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT  255 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  255 (293)
                      .+..++...|+++.|...+++..+..|.+...+..+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            555566666666666666666666665555555544444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=1.5e-06  Score=60.09  Aligned_cols=96  Identities=8%  Similarity=-0.080  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      +...+..+...+...|++++|++.|++..+.   .|+    ...+..+..++...|++++|...++...+  ..+.+...
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHH
Confidence            4556666666667777777777777766653   343    34555555556666666666666666554  12334445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      +..+..++...|++++|...|++..
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555555555555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=5.5e-07  Score=60.45  Aligned_cols=93  Identities=8%  Similarity=-0.122  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY   88 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   88 (293)
                      +..+...+.+.|++++|+..|++..+..  +.+...|..+..++...|++++|...+++..+  -.|.+...+..+..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            3344445555666666666666655531  23444555555555555666666665555554  2233444555555555


Q ss_pred             HHcCCHHHHHHHHHHhh
Q 036775           89 VKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~  105 (293)
                      .+.|++++|+..|++..
T Consensus        96 ~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           96 TNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            55555555555555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.51  E-value=5.2e-07  Score=60.53  Aligned_cols=93  Identities=10%  Similarity=-0.086  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775          182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA  259 (293)
Q Consensus       182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  259 (293)
                      .+..+...+.+.|++++|...|++. ...| +...|..+..++...|+++.|...+++..+..|.++..+..+..++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3555677788888888888888887 3344 5557777777788888888888888888888888888888888899999


Q ss_pred             CCHHHHHHHHHHHHH
Q 036775          260 DRWEDANKIRDEIRR  274 (293)
Q Consensus       260 g~~~~a~~~~~~m~~  274 (293)
                      |++++|...+++..+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998888765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.50  E-value=1.7e-06  Score=60.66  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCc-hHh
Q 036775          146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-------PIEA-EWS  213 (293)
Q Consensus       146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~-~~~  213 (293)
                      ++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++|...+++.       +..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444444455555555555555544431100011    124455555566666666666655554       1001 122


Q ss_pred             HHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          214 VWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+..+...+...|+++.|...+++..+..      +....++..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            44555555666666666666666555432      11245677788888888899999888887655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.50  E-value=2.9e-06  Score=57.41  Aligned_cols=91  Identities=9%  Similarity=-0.095  Sum_probs=48.7

Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Cc-------ccHHH
Q 036775           45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DM-------ISWST  114 (293)
Q Consensus        45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-------~~~~~  114 (293)
                      +..+...+.+.|++++|...|++..+  -.|.+...|..+..+|.+.|++++|++.+++..+.   +.       .+|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34444445555555555555555544  22334445555566666666666666666555431   11       13444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 036775          115 VISGLAMNGCGRQALQLFSLMII  137 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~  137 (293)
                      +..++...|++++|++.|++...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            55556666666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.49  E-value=1.9e-06  Score=58.07  Aligned_cols=25  Identities=4%  Similarity=0.005  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEME   33 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~   33 (293)
                      |..+...+...|++++|+..|++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~   31 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAK   31 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3333333444444444444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.49  E-value=7.5e-07  Score=60.09  Aligned_cols=94  Identities=11%  Similarity=-0.038  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCC-Ccc----hhHHHHH
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQ----TQHYACV  186 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l  186 (293)
                      |..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++...+...- .++    ..++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            44445555555555555555555544321 13444455555555555555555555555431100 011    3344444


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 036775          187 VDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       187 ~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+|...|++++|...|++.
T Consensus        86 a~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHH
Confidence            44455555555555544444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.46  E-value=1.2e-06  Score=59.18  Aligned_cols=100  Identities=13%  Similarity=-0.001  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhcCCCcch---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHHHHHH
Q 036775          149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQT---QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLN  220 (293)
Q Consensus       149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~  220 (293)
                      .+...+...|++++|...|+.+.+..  +.+.   ..+..+..+|...|++++|...|++. ...|+    ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            44556667778888888777776521  2222   35666777777777777777777776 22232    345566666


Q ss_pred             HHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775          221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFA  250 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  250 (293)
                      ++...|+++.|...++.+.+..|.++....
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            677777777777777777776665554433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.41  E-value=5.8e-07  Score=75.37  Aligned_cols=86  Identities=9%  Similarity=-0.139  Sum_probs=42.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE  197 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  197 (293)
                      .+.+.|++++|.+.|++..+.... +..++..+..++.+.|++++|.+.+++..+  -.+.+...+..+..+|...|+++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence            344455555555555555543221 344555555555555555555555555554  11223344555555555555555


Q ss_pred             HHHHHHHhC
Q 036775          198 EAEAFIREM  206 (293)
Q Consensus       198 ~a~~~~~~~  206 (293)
                      +|...|++.
T Consensus        92 eA~~~~~~a  100 (477)
T 1wao_1           92 AALRDYETV  100 (477)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.41  E-value=2.3e-06  Score=71.79  Aligned_cols=121  Identities=9%  Similarity=-0.082  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY   88 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   88 (293)
                      |..+...+.+.|++++|++.|++..+.  .+.+...|..+..++.+.|++++|...+++..+  ..+.+...+..+..+|
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN   84 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            444445677889999999999999885  244578899999999999999999999999988  4556778889999999


Q ss_pred             HHcCCHHHHHHHHHHhhhC---CcccHHHHHHH--HHhcCCHHHHHHHHH
Q 036775           89 VKCGDVGIAIQVFNMLAYK---DMISWSTVISG--LAMNGCGRQALQLFS  133 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~--~~~~~~~~~a~~~~~  133 (293)
                      .+.|++++|++.|++..+.   +...+..+..+  +.+.|++++|.+.++
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999998753   45566666666  888899999999998

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.41  E-value=4.5e-06  Score=56.25  Aligned_cols=99  Identities=13%  Similarity=-0.060  Sum_probs=71.5

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHH
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYA  184 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~  184 (293)
                      .+..+...+...|++++|...|++..+.... +.   ..+..+..++.+.|++++|...++...+..  +.+   ...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~   80 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL   80 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence            3455667788888888888888888775332 22   467777778888888888888888887622  222   45677


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775          185 CVVDMYGRAGLLEEAEAFIREM-PIEAEW  212 (293)
Q Consensus       185 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~  212 (293)
                      .+..+|...|++++|...|++. ...|+.
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            7888888888888888888877 333443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.40  E-value=3.1e-06  Score=70.86  Aligned_cols=123  Identities=11%  Similarity=-0.026  Sum_probs=98.1

Q ss_pred             HHhcCCChhHHHHHHHHhhhhcC-----CCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCchHh-HHH
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYE-----IVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWS-VWG  216 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~~~~~-~~~  216 (293)
                      .+...|++++|..++++..+...     -.|+ ..+++.|..+|...|++++|+.++++.         +..|+.. +++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35688999999999988765221     1233 468899999999999999999998876         3456654 789


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhh-----cCCc---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNK-----KGVS---VGTFALMSNTFAGADRWEDANKIRDEIRRM  275 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  275 (293)
                      .|...|...|++++|..++++..+.     ++..   ..+.+.+..++...+++++|..+|..+++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887763     2333   345678888899999999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.38  E-value=3.6e-06  Score=70.25  Aligned_cols=86  Identities=7%  Similarity=-0.080  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ..|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+..++.+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44555555666666666666666555 2222 344555555556666666666666666666555555666666666666


Q ss_pred             CCCHHHHH
Q 036775          259 ADRWEDAN  266 (293)
Q Consensus       259 ~g~~~~a~  266 (293)
                      .|+++++.
T Consensus       398 ~~~~~~a~  405 (457)
T 1kt0_A          398 AKEHNERD  405 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.37  E-value=5.6e-06  Score=69.05  Aligned_cols=93  Identities=6%  Similarity=-0.104  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      ..+|..+..+|.+.|++++|+..+++..+.   +...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~  395 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            355666667777777777777777766542   4455666667777777777777777776654322 445566666666


Q ss_pred             hcCCChhHHH-HHHHHhh
Q 036775          155 SHGGLVDQGL-ILFKAMS  171 (293)
Q Consensus       155 ~~~~~~~~a~-~~~~~~~  171 (293)
                      .+.++.+++. ..+..|.
T Consensus       396 ~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          396 KKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            6666666554 3344443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.36  E-value=7.8e-06  Score=66.17  Aligned_cols=119  Identities=9%  Similarity=-0.042  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhh----------------C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAY----------------K---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV  140 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  140 (293)
                      .+..+...+.+.|++++|++.|++..+                .   +..+|..+..++.+.|++++|++.+++..+...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            356677778888888888888877664                1   334566666677777777777777777666533


Q ss_pred             CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775          141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA  201 (293)
Q Consensus       141 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  201 (293)
                      . +...+..+..++...|++++|...|++..+.  .+.+...+..+..++...++.+++.+
T Consensus       305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 4566666666677777777777777766652  12244455556666666665555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.35  E-value=1.4e-06  Score=57.91  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775          122 NGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       122 ~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  199 (293)
                      .|++++|+..|++..+.+  -+-+...+..+..++...|++++|...+++..+.  .+-+...+..+..+|...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            345555555555555442  1112344555555555555555555555555541  122344455555555555555555


Q ss_pred             HHHHHhC
Q 036775          200 EAFIREM  206 (293)
Q Consensus       200 ~~~~~~~  206 (293)
                      ...+++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.34  E-value=4.1e-06  Score=58.32  Aligned_cols=61  Identities=10%  Similarity=-0.069  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCChhhchHHHHHHHhh-------cCCchhhH----HHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          214 VWGALLNACRIHRNDEMFDPIRQELVNK-------KGVSVGTF----ALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|..+..++...|++++|...+++..+.       .|.+...|    .....++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5666666677777777777777777776       77777788    8888888888888888888887755

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.34  E-value=5.9e-06  Score=69.15  Aligned_cols=121  Identities=6%  Similarity=-0.175  Sum_probs=66.5

Q ss_pred             hcccCcchHHHHHHHHHHhhc--CC----CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHH
Q 036775           52 CSSISALSFGQYVHSYISTRY--DL----SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWST  114 (293)
Q Consensus        52 ~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~  114 (293)
                      +...|++++|..++++..+..  -+    +....+++.|...|...|++++|+.++++..+.           ...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            335566666665555554411  11    112344566666666666666666666655421           1234666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----CCCC-Cc-HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          115 VISGLAMNGCGRQALQLFSLMII-----NGVF-PD-DVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      |...|...|++++|+.++++..+     .|.. |+ ..+...+-.++...+.+++|+.++..+++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666776666666666542     1221 22 23344444555566777777777777765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.31  E-value=3.4e-06  Score=67.46  Aligned_cols=144  Identities=11%  Similarity=-0.070  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..+-..+.+.|++++|+..|++...   ..|+...+       ...++..++...+           ....|..+..
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~-------~~~~~~~~~~~~l-----------~~~~~~nla~  238 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMF-------QLYGKYQDMALAV-----------KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHH-------TCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchhh-------hhcccHHHHHHHH-----------HHHHHHHHHH
Confidence            3455555666667777777777777665   33443311       1122222221111           0125677777


Q ss_pred             HHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH-HhcCCChhH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CSHGGLVDQ  162 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~  162 (293)
                      +|.+.|++++|+..+++..+.   +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888777642   4556777778888888888888888887654321 33344444333 234456667


Q ss_pred             HHHHHHHhhh
Q 036775          163 GLILFKAMST  172 (293)
Q Consensus       163 a~~~~~~~~~  172 (293)
                      +...|..+..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7777777764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.31  E-value=0.00025  Score=59.69  Aligned_cols=203  Identities=11%  Similarity=-0.050  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH-HHH
Q 036775           23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI-QVF  101 (293)
Q Consensus        23 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~  101 (293)
                      +.+..+|+++...  .+.++..|...+.-+.+.|+.+.|..++++... .  |.+...+..    |+...+.++.. .+.
T Consensus       196 ~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~--P~~~~l~~~----y~~~~e~~~~~~~l~  266 (493)
T 2uy1_A          196 SRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M--SDGMFLSLY----YGLVMDEEAVYGDLK  266 (493)
T ss_dssp             HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSSHHHHH----HHHHTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-C--CCcHHHHHH----HHhhcchhHHHHHHH
Confidence            4567788888775  456677888888888889999999999999998 3  555444432    22222212211 111


Q ss_pred             HHhh------------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCChhHHHHHHH
Q 036775          102 NMLA------------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFK  168 (293)
Q Consensus       102 ~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~  168 (293)
                      +...            ......|...+....+.++.+.|..+|++. +. ...+...|......-.. .++.+.|..+|+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife  344 (493)
T 2uy1_A          267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS  344 (493)
T ss_dssp             HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            1110            001245666777777788899999999998 32 12344444432222222 336999999999


Q ss_pred             HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ...+..  +-+...+...++.....|+.+.|..+|++..  .....|...+.--...|+.+.+..++++..+
T Consensus       345 ~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          345 SGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            988733  2234456667787888999999999999983  3466788777777788999999988877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.31  E-value=1.2e-06  Score=58.37  Aligned_cols=92  Identities=10%  Similarity=-0.050  Sum_probs=64.3

Q ss_pred             cCCChhHHHHHHHHhhhhcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775          156 HGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ..|++++|+..|++..+ .+  -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            45788888888888875 22  1234567778888888888888888888887 3334 355677777778888888888


Q ss_pred             hHHHHHHHhhcCCchhh
Q 036775          232 DPIRQELVNKKGVSVGT  248 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~  248 (293)
                      ...+++.....|.++..
T Consensus        81 ~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           81 VELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHhCCCcHHH
Confidence            88888888777666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.29  E-value=6e-06  Score=58.29  Aligned_cols=104  Identities=13%  Similarity=-0.041  Sum_probs=72.5

Q ss_pred             cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----------------CCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------------IVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ....+......+.+.|++++|...|....+...                .+.+...|..+..+|.+.|++++|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            345677777788888888888888888876200                1122356777777777888888887777776


Q ss_pred             -CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775          207 -PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       207 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                       ...| +...|..+..++...|+++.|...+++..+..|.+.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence             3334 345677777777778888888888877777777665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.27  E-value=7.2e-06  Score=66.35  Aligned_cols=122  Identities=5%  Similarity=-0.162  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhc--------------CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVY--------------EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-  210 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-  210 (293)
                      +..+...+.+.|++++|...|++..+..              ..+.+...|..+..+|.+.|++++|+..+++. ...| 
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            4444445555555555555555554300              11224567888888999999999999999887 5555 


Q ss_pred             hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775          211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI  268 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  268 (293)
                      +...|..+..+|...|++++|...+++..+..|.+...+..+..++...++.+++.+.
T Consensus       306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557888888899999999999999999998888888888888888888877777553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=1.4e-05  Score=55.65  Aligned_cols=90  Identities=11%  Similarity=-0.050  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhCCcc---------------cHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYKDMI---------------SWSTVISGLAMNGCGRQALQLFSLMIIN-----GVF  141 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~  141 (293)
                      ......+.+.|++++|+..|++..+-++.               .|+.+..++.+.|++++|+..+++..+.     .+.
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            34445555556666666666655432111               4555555555555555555555555442     012


Q ss_pred             C-cHhHH----HHHHHHHhcCCChhHHHHHHHHhh
Q 036775          142 P-DDVTF----IALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       142 p-~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      | +...|    .....++...|++++|+..|+...
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            2 22333    444444445555555555554444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=3.3e-06  Score=67.51  Aligned_cols=93  Identities=5%  Similarity=-0.170  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH-Hhc
Q 036775          182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT-FAG  258 (293)
Q Consensus       182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~  258 (293)
                      .|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+... ...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            5666777777777777777777766 3333 445666677777777777777777777777666666666666655 334


Q ss_pred             CCCHHHHHHHHHHHHH
Q 036775          259 ADRWEDANKIRDEIRR  274 (293)
Q Consensus       259 ~g~~~~a~~~~~~m~~  274 (293)
                      .+..+++.+.|+.|..
T Consensus       312 ~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          312 KALYQKQKEMYKGIFK  327 (338)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            5566667777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.19  E-value=5.3e-05  Score=53.33  Aligned_cols=108  Identities=11%  Similarity=0.009  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC-----CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-----AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ...+...-..+.+.|++++|+..|.+....-.     ..|+...+                    ..     ..+.+..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~~~   65 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE-----LDRKNIPL   65 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH-----HHHTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH-----HHHHHHHH
Confidence            45577777888999999999999998876300     01111000                    00     11233445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  138 (293)
                      |..+..+|.+.|++++|+..+++..+.   +...|..+..++...|++++|...|++....
T Consensus        66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            566666666666666666666666542   3445666666666777777777777666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.15  E-value=0.00017  Score=61.70  Aligned_cols=168  Identities=9%  Similarity=-0.086  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC--
Q 036775           94 VGIAIQVFNMLAYKDM---ISWSTVISGLAMNGC----------GRQALQLFSLMIINGVFPDDVTFIALISACSHGG--  158 (293)
Q Consensus        94 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--  158 (293)
                      .++|++.++++.+.++   .+|+.--.++...|+          ++++++.++++.+...+ +..+|..-...+.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence            4577888888776433   345555555555555          78888888888877655 6777877777777888  


Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc----------
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-LLEEAEAFIREM-PIEA-EWSVWGALLNACRIH----------  225 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~----------  225 (293)
                      +++++.+.++.+.+.  -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...          
T Consensus       124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence            668888888888862  2446677877777777888 788888888887 4444 455676666655442          


Q ss_pred             ----CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHH
Q 036775          226 ----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWED  264 (293)
Q Consensus       226 ----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  264 (293)
                          +.++++...+++.....|.+...|..+-..+.+.++.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                456888888988888899999999999888888887554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.12  E-value=3.1e-06  Score=55.32  Aligned_cols=95  Identities=12%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc------
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS------   77 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------   77 (293)
                      ++...|..+...+...|++++|++.|++..+..  +.+...+..+..++...|++++|...++...+  ..+.+      
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~   77 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIR   77 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHH
Confidence            356677778888888888888888888887752  44566777777778888888888888888765  22222      


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHH
Q 036775           78 NLVGNAVINMYVKCGDVGIAIQVFN  102 (293)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~  102 (293)
                      ...+..+..++...|+.+.|.+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            3344455555555555554444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.09  E-value=7e-06  Score=53.60  Aligned_cols=59  Identities=15%  Similarity=0.069  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      |..+...+...|++++|.+.|++..+.... +...+..+..++.+.|++++|...++...
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            334444444444444444444444433221 33344444444444444444444444444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.06  E-value=6e-05  Score=46.98  Aligned_cols=82  Identities=13%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      +...|..+...+...|++++|+..|++..+..  +.+...+..+..++...|++++|...+++..+  ..+.+...+..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l   83 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence            45567777777777788888887777776642  33455666666777777777777777777766  233344555555


Q ss_pred             HHHHHH
Q 036775           85 INMYVK   90 (293)
Q Consensus        85 ~~~~~~   90 (293)
                      ...+.+
T Consensus        84 ~~~~~~   89 (91)
T 1na3_A           84 GNAKQK   89 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.03  E-value=0.00022  Score=61.04  Aligned_cols=174  Identities=7%  Similarity=-0.070  Sum_probs=130.0

Q ss_pred             HcCC-HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc----------chHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775           18 ERGF-CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA----------LSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus        18 ~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      +.|. .++|++.++++....  +-+...|+.--.++...++          ++++.+.++.+.+  ..|-+..+|+.-.-
T Consensus        40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w  115 (567)
T 1dce_A           40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCW  115 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            3444 567899999998853  3334566665555555555          8899999999987  56777888888888


Q ss_pred             HHHHcC--CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC---
Q 036775           87 MYVKCG--DVGIAIQVFNMLAYK---DMISWSTVISGLAMNG-CGRQALQLFSLMIINGVFPDDVTFIALISACSHG---  157 (293)
Q Consensus        87 ~~~~~~--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---  157 (293)
                      .+.+.+  +++++++.++++.+.   +..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.   
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence            888888  779999999999875   5567877777788888 899999999999887665 777777776666552   


Q ss_pred             -----------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775          158 -----------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       158 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  198 (293)
                                 +.++++.+.++.....  .+-+...|..+...+.+.++.++
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence                       4578888888888762  24567788888888877777444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.97  E-value=0.00033  Score=47.85  Aligned_cols=110  Identities=13%  Similarity=-0.082  Sum_probs=61.1

Q ss_pred             CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHH
Q 036775           20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVG   95 (293)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~   95 (293)
                      +++++|++.|++..+.|  .|+..    +-..+...+.++.|.+.|+...+ .   -+...+..|...|..    .++++
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence            45666666666666554  22222    44445555556666666666655 2   234455555555655    55666


Q ss_pred             HHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 036775           96 IAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIING  139 (293)
Q Consensus        96 ~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g  139 (293)
                      +|.++|++..+. +...+..|...|..    .++.++|.+.|++..+.|
T Consensus        79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            666666655543 44455555555555    556666666666555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.92  E-value=3.8e-05  Score=50.56  Aligned_cols=74  Identities=11%  Similarity=-0.013  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775           61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI  136 (293)
Q Consensus        61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~  136 (293)
                      +...++...+  ..+.+...+..+...|...|++++|+..|++..+.   +...|..+..++...|++++|...|++..
T Consensus         4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444433  22334444455555555555555555555544431   22334444444555555555555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.92  E-value=5.7e-05  Score=47.09  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      .+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|...+++..+..|.++..+..+..++.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3444444555555555555555444 1112 23344444445555555555555555555555555555554444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.88  E-value=8.5e-05  Score=47.60  Aligned_cols=61  Identities=7%  Similarity=-0.102  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775          180 TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN  240 (293)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  240 (293)
                      ...+..+..+|...|++++|+..|++. ...| +...|..+..+|...|++++|...+++..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555555555555555554 2222 223445555555555555555555555444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.85  E-value=6e-05  Score=49.60  Aligned_cols=81  Identities=9%  Similarity=-0.018  Sum_probs=62.2

Q ss_pred             hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      +.|...|+...+  ..+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|+++.|...+++.
T Consensus         2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457777887775  22445677888888999999999999999887 3334 4557778888888999999999999888


Q ss_pred             HhhcC
Q 036775          239 VNKKG  243 (293)
Q Consensus       239 ~~~~~  243 (293)
                      .+..|
T Consensus        80 l~~~~   84 (115)
T 2kat_A           80 LAAAQ   84 (115)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            77553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.85  E-value=7.6e-05  Score=47.83  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=31.2

Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775           77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI  136 (293)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~  136 (293)
                      +...+..+...|.+.|++++|+..|++..+.   +...|..+..+|...|++++|.+.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555555431   33445555555555555555555555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.81  E-value=0.00028  Score=48.24  Aligned_cols=109  Identities=8%  Similarity=-0.101  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEA  199 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  199 (293)
                      ++++|.+.|++..+.|. |+..    +-..|...+.+++|.+.|+...+ .   .+...+..|...|..    .+++++|
T Consensus        10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45555666665555542 2222    44444444555556666655554 2   234445555555555    4555555


Q ss_pred             HHHHHhCCCCchHhHHHHHHHHHHh----cCChhhchHHHHHHHhh
Q 036775          200 EAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDPIRQELVNK  241 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  241 (293)
                      ..+|++.-...+...+..|...|..    .++.++|...+++..+.
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555554111233333334444433    44444444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.75  E-value=0.0015  Score=52.01  Aligned_cols=72  Identities=10%  Similarity=0.028  Sum_probs=43.4

Q ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775          108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA  184 (293)
Q Consensus       108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      +..+|..+...+...|++++|...++++...+  |+...|..+-..+.-.|+.++|.+.+++..+.   .|...+|.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~  347 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY  347 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence            44555555555555667777777777666654  56556656666666667777777776666542   34444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.70  E-value=2.5e-05  Score=54.28  Aligned_cols=88  Identities=13%  Similarity=-0.075  Sum_probs=52.3

Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH----------HHHHHHHhC-CCCch-HhHHHHHHHHH
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE----------EAEAFIREM-PIEAE-WSVWGALLNAC  222 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~-~~~~~-~~~~~~l~~~~  222 (293)
                      .+.+.+++|.+.++...+.  -+.+...|..+..++...++++          +|+..|++. .+.|+ ...|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            3455677788888777752  2345667777777777776653          566666555 33443 33555565555


Q ss_pred             HhcC-----------ChhhchHHHHHHHhhcCC
Q 036775          223 RIHR-----------NDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       223 ~~~~-----------~~~~a~~~~~~~~~~~~~  244 (293)
                      ...|           ++++|...|++..+..|.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            5443           566666666666555554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.67  E-value=0.0031  Score=41.95  Aligned_cols=84  Identities=15%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          193 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       193 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      +|++......+-.++  .+....+.-+......|.-+.-.+++..+....++++.....+..+|.+.|+..+|.+++++.
T Consensus        74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            344444444444443  233445667777889999999999999887778889999999999999999999999999999


Q ss_pred             HHcCCC
Q 036775          273 RRMGLK  278 (293)
Q Consensus       273 ~~~~~~  278 (293)
                      .+.|++
T Consensus       152 C~kG~k  157 (172)
T 1wy6_A          152 CKKGEK  157 (172)
T ss_dssp             HHTTCH
T ss_pred             HHhhhH
Confidence            998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.62  E-value=0.00017  Score=59.37  Aligned_cols=82  Identities=7%  Similarity=-0.024  Sum_probs=60.7

Q ss_pred             cCChHHHHHHHHhC---------CCCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhh-----cCC---chhhHHHHHH
Q 036775          193 AGLLEEAEAFIREM---------PIEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNK-----KGV---SVGTFALMSN  254 (293)
Q Consensus       193 ~g~~~~a~~~~~~~---------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~li~  254 (293)
                      .|++++|+.++++.         ...|+. .+++.|..+|...|++++|..++++..+.     ++.   ...+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46778888777665         234544 37888888888889999888888877753     122   2346888999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH
Q 036775          255 TFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       255 ~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|..+|++++|..++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999998887644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.52  E-value=0.00054  Score=47.58  Aligned_cols=85  Identities=11%  Similarity=-0.035  Sum_probs=52.1

Q ss_pred             HHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcch----------HHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775           17 AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS----------FGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      .+.+++++|++.++...+..  +.+...|..+..++...++++          +|...|++..+  -.|.+..+|..+..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence            45567788888888877753  445666666666766666544          66666666655  23334455666666


Q ss_pred             HHHHcC-----------CHHHHHHHHHHhh
Q 036775           87 MYVKCG-----------DVGIAIQVFNMLA  105 (293)
Q Consensus        87 ~~~~~~-----------~~~~A~~~~~~~~  105 (293)
                      +|...|           ++++|++.|++..
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl  118 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV  118 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence            666553           4555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.51  E-value=0.0006  Score=56.18  Aligned_cols=88  Identities=11%  Similarity=-0.057  Sum_probs=60.0

Q ss_pred             HHHHHhcCChHHHHHHHHhC---------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc-----CC---chhh
Q 036775          187 VDMYGRAGLLEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK-----GV---SVGT  248 (293)
Q Consensus       187 ~~~~~~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~---~~~~  248 (293)
                      +..+.+.|++++|+.++++.         ...|+ ..+++.+..+|...|++++|..++++..+..     +.   ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            44455677888888777655         12333 2367777777888888888888887766531     22   2345


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          249 FALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       249 ~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            78888888888888888888876543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.43  E-value=0.00038  Score=57.31  Aligned_cols=61  Identities=11%  Similarity=-0.128  Sum_probs=29.7

Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-HhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMIIN-----GV-FPD-DVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      +++.|..+|...|++++|+.++++..+.     |. -|+ ..+++.+...|...|++++|..++++..
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3445555555555555555555544321     11 122 2345555555555566555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.35  E-value=0.002  Score=57.65  Aligned_cols=98  Identities=13%  Similarity=0.019  Sum_probs=47.2

Q ss_pred             HHcCCHHHHHH-HHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775           89 VKCGDVGIAIQ-VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF  167 (293)
Q Consensus        89 ~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  167 (293)
                      ...+++++|.+ ++..+.  +......++..+.+.|.++.|+++.+.       |.     .-.......|+++.|.++.
T Consensus       610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~  675 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLL  675 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHH
Confidence            34556666655 442221  011124455555556666665554421       10     0112233456666666554


Q ss_pred             HHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                      +.+       .+...|..+...+.+.|+++.|.+.|.+++
T Consensus       676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            332       233456666666666666666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.34  E-value=0.002  Score=40.53  Aligned_cols=67  Identities=7%  Similarity=0.008  Sum_probs=50.0

Q ss_pred             chHhHHHHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          210 AEWSVWGALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                      .+...+..+..++...++   .+.|..++++..+..|.++.....+...+.+.|++++|...|+++.+..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            345556666666533333   6788888888888888888888888888888888888888888887643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.32  E-value=0.0009  Score=55.13  Aligned_cols=88  Identities=10%  Similarity=0.007  Sum_probs=54.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-HhH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMIIN-----GV-FPD-DVT  146 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~  146 (293)
                      +..+.+.|++++|+.++++..+.           ...+++.+..+|...|++++|+.++++....     |. -|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33445566777777777666532           1235666777777777777777777766431     21 122 356


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          147 FIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ++.+...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77777777777777777777776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.30  E-value=0.0047  Score=55.22  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775           14 GGYAERGFCEEAVS-VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG   92 (293)
Q Consensus        14 ~~~~~~~~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (293)
                      ......+++++|.+ ++..      ++ +......++..+.+.|..+.|.++.+...             .-.......|
T Consensus       607 ~~~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~  666 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVG  666 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHT
T ss_pred             hHHHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcC
Confidence            34456788888866 4422      12 01122666677777788777776543221             1134456789


Q ss_pred             CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775           93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus        93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ++++|.++.+.+.  +...|..+...+.+.++++.|.+.|.++.+         |..+...+...|+.+...++-+....
T Consensus       667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999876653  557899999999999999999999998753         33444455556777666665555543


Q ss_pred             hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                       .|      -++.-..+|.+.|++++|++++.+++
T Consensus       736 -~~------~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          736 -TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             -TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             -cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence             22      13334445666777777777777665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.28  E-value=0.0004  Score=44.04  Aligned_cols=62  Identities=16%  Similarity=-0.030  Sum_probs=30.4

Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCc-hHh-HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775          188 DMYGRAGLLEEAEAFIREM-PIEA-EWS-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       188 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  249 (293)
                      ..+...|++++|...+++. ...| +.. .+..+..++...|+++.|...+++..+..|.+...+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3444555555555555544 2222 223 444444455555555555555555555555444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.14  E-value=0.0074  Score=48.07  Aligned_cols=66  Identities=12%  Similarity=0.014  Sum_probs=35.3

Q ss_pred             cchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775          178 PQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG  243 (293)
Q Consensus       178 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  243 (293)
                      .+..+|..+...+...|++++|...+++. ...|+...|..+...+...|+.++|...+++.....|
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            34445555554455556666666665555 3334544444444445556666666666655555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.13  E-value=0.0013  Score=41.53  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCCchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGVSVG-TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      ....+...|+++.|...+++..+..|.++. .+..+..++...|++++|.+.|++..+.  .|+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~   69 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSP   69 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence            345578899999999999999999999999 9999999999999999999999998874  44443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.053  Score=38.26  Aligned_cols=129  Identities=13%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775           86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI  165 (293)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  165 (293)
                      ......|+++.|.++.+.+  .+...|..|.....+.|+++-|...|.+..+         +..+.-.|.-.|+.+.-.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3445677888887776655  3556788888888888888888888877642         2334444555666666555


Q ss_pred             HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775          166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL  238 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  238 (293)
                      +-+.... .|      -++.-...+.-.|+++++.++|.+.+.-|....      .....|-.+.|.++.+.+
T Consensus        82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            5444443 22      144455566677888888888877764343221      123355556666655444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.90  E-value=0.011  Score=37.78  Aligned_cols=71  Identities=8%  Similarity=-0.065  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775          180 TQHYACVVDMYGRAGLLEEAEAFIREM-----P----IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFA  250 (293)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  250 (293)
                      ..-+..|...+.+.|+++.|..+|+..     +    -.+....+..+..++.+.|+++.|...++++.+..|.+..+.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            333445555666666666666666554     0    0123445666666666666666666666666666665554433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.075  Score=37.47  Aligned_cols=130  Identities=12%  Similarity=0.099  Sum_probs=86.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775          116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL  195 (293)
Q Consensus       116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  195 (293)
                      .......|+++.|.++.+++      -+...|..+.......|+++-|.+.|.....          +..+.-.|.-.|+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence            34456788888888887765      3778888888888888999888888888764          4456666777788


Q ss_pred             hHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       196 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      .++...+-+....+.+   ++.-...+...|+++++.+++.+..+        +.--.......|-.+.|.++.+++
T Consensus        76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence            7776655444421111   44555667788888888888754422        111112222366778888887765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.52  E-value=0.031  Score=38.39  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC---ChhHHHHHHHHhhhhcCCCc--chhHHHHHHHHHHhcCChHHH
Q 036775          125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVP--QTQHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a  199 (293)
                      ...+.+-|.+..+.|. ++..+...+..++++++   +.++++.+++...+ .. .|  +...+..|.-+|.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            3455566666655555 57777777777777777   55688888888776 22 24  344555677777888888888


Q ss_pred             HHHHHhC-CCCch
Q 036775          200 EAFIREM-PIEAE  211 (293)
Q Consensus       200 ~~~~~~~-~~~~~  211 (293)
                      .+.++.+ .+.|+
T Consensus        91 ~~y~~~lL~ieP~  103 (152)
T 1pc2_A           91 LKYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCC
Confidence            8888877 45554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.4  Score=39.67  Aligned_cols=252  Identities=11%  Similarity=0.125  Sum_probs=153.2

Q ss_pred             cCCHHHHHHHHHHHHHcc----CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH--HHHHHHHHHcC
Q 036775           19 RGFCEEAVSVFQEMEKTK----EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG--NAVINMYVKCG   92 (293)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~   92 (293)
                      .|+++.|++.+-.+.+..    ...........++..|...++++...+.+..+.+.+|..+...+.  +.++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            367888988887776532    134456678889999999999999988888877755654444322  23333333333


Q ss_pred             CHH--HHHHHHHHhhhC-Cc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---HhHHHHHHHHHh
Q 036775           93 DVG--IAIQVFNMLAYK-DM---------ISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPD---DVTFIALISACS  155 (293)
Q Consensus        93 ~~~--~A~~~~~~~~~~-~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~  155 (293)
                      ..+  .-..+.+....- ..         .....|...+...|++.+|.+++.++...  |....   ...+..-+..|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            322  223333333211 11         12356788899999999999999998642  32222   356777888899


Q ss_pred             cCCChhHHHHHHHHhhhh---cCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHH----HHHHH
Q 036775          156 HGGLVDQGLILFKAMSTV---YEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGA----LLNAC  222 (293)
Q Consensus       156 ~~~~~~~a~~~~~~~~~~---~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~----l~~~~  222 (293)
                      ..+++..|..+++.+...   ...+|+.  ..+...+..+...+++.+|.+.|.+.    ....+...+..    ++...
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~  268 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL  268 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            999999999999887431   1222322  35667788888999999998888777    11112222221    12222


Q ss_pred             HhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHHhcC--CCHHHHHHHHH
Q 036775          223 RIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTFAGA--DRWEDANKIRD  270 (293)
Q Consensus       223 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~  270 (293)
                      .-.+....-..+........ .++...|..++.+|...  .+++...+.|.
T Consensus       269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~  319 (445)
T 4b4t_P          269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE  319 (445)
T ss_dssp             HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred             HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence            22222233333444333332 34566788888888653  56676666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.22  E-value=6.5e-07  Score=72.78  Aligned_cols=240  Identities=11%  Similarity=0.097  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775            7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN   86 (293)
Q Consensus         7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~   86 (293)
                      ..|..|-.+....+++.+|++.|=+       .-|+..|..++.++.+.|.++.-...+...++ ..-  ++.+=+.|+.
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~  124 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIF  124 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHH
Confidence            3466677777777777777655432       23455778899999999999999998888876 333  3344478999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCcHhH
Q 036775           87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--------------------VFPDDVT  146 (293)
Q Consensus        87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~  146 (293)
                      +|++.+++.+-++++.   .|+..-...+..-|...|.++.|.-+|..+....                    -.-+..|
T Consensus       125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            9999988766544432   3455555666666666777776666665542110                    0125567


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHh
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRI  224 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~  224 (293)
                      |..+-.+|...+.+..|...--.++-    .++.  ...++.-|...|.+++.+.+++.- +. +...-+++-|.-.|++
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniIv----hade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIVV----HADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHHC----CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhcc----cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence            77777777777777666554333332    1222  334666677777777777777765 32 3455566666666655


Q ss_pred             cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775          225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE  271 (293)
Q Consensus       225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  271 (293)
                      . .+++..+.++....     ..----+|++|.+..-|.++.=++..
T Consensus       276 Y-~PeKlmEHlklf~s-----riNipKviracE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          276 F-KPQKMREHLELFWS-----RVNIPKVLRAAEQAHLWAELVFLYDK  316 (624)
T ss_dssp             S-CTTHHHHHHTTSSS-----SSCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred             c-CHHHHHHHHHHHHH-----hccHHHHHHHHHHHhhHHHHHHHHhc
Confidence            4 33333322222111     11122357788888888877776653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.22  E-value=0.096  Score=32.62  Aligned_cols=65  Identities=8%  Similarity=-0.091  Sum_probs=36.4

Q ss_pred             cchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            4 RDVVSWTTMIGGYAERGF---CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      +|...+..+..++...++   .++|..++++..+..  +-+......+...+.+.|++++|...|+.+.+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555555555544433   566666666666632  33344555555556666666666666666655

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.18  E-value=0.5  Score=42.69  Aligned_cols=254  Identities=11%  Similarity=-0.053  Sum_probs=112.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-C-----CCchhHHHHHHHH
Q 036775           15 GYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYD-L-----SVSNLVGNAVINM   87 (293)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~~~l~~~   87 (293)
                      +....|+.++++.+++.....+ ...+....=..+.-+....|..+++..++........ +     .+....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            3455666666666666543311 0111222222222223344444456665555444111 0     0112222333333


Q ss_pred             HHHcCC-HHHHHHHHHHhhhCCc-cc--HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH--HHHhcCCC
Q 036775           88 YVKCGD-VGIAIQVFNMLAYKDM-IS--WS--TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI--SACSHGGL  159 (293)
Q Consensus        88 ~~~~~~-~~~A~~~~~~~~~~~~-~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~  159 (293)
                      ++-.|. -+++.+.+..+...+. ..  ..  +|...+.-.|+.+....++..+.+..   +......+.  -++...|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            333332 2344555554443322 11  11  22223345566666666666665431   222222233  33446677


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHH--HHHHHHHHhcCChHHHHHHHHhCCCC--chHhHHHHHHHHHHhcCChhhchHHH
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNACRIHRNDEMFDPIR  235 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~  235 (293)
                      .+.+..+.+.+..  ...|....-  .++.-+|+..|+.....++++.+...  .++.....+.-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            7777777777765  222322211  23344566677766666677766212  22222222222344556666666666


Q ss_pred             HHHHhhcCCchhhHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 036775          236 QELVNKKGVSVGTFALMSNTFAGADRW-EDANKIRDEIR  273 (293)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  273 (293)
                      +.+.+...+...--..+.-+....|.. .++.+++..+.
T Consensus       618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            555444433333223333333333332 45555555553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.15  E-value=0.032  Score=42.76  Aligned_cols=66  Identities=9%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHh-----cCChhhchHHHHHHHhhcCC-chhhHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCC
Q 036775          213 SVWGALLNACRI-----HRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFAGA-DRWEDANKIRDEIRRMGLK  278 (293)
Q Consensus       213 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~  278 (293)
                      ..|..+...|..     .|+.++|...|++..+..|. +..++......+++. |+.+++.+++++.......
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            345555555544     35666666666666665553 355566666666553 6666666666665554433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.11  E-value=0.052  Score=37.25  Aligned_cols=89  Identities=8%  Similarity=-0.133  Sum_probs=65.8

Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-c--hHhHHHHHHHHHHhcCChhhc
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG---LLEEAEAFIREM-PIE-A--EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ....+.+.|.+... .+ +++..+...+..++++.+   ++++++.+|++. ... |  +...+..+.-+|.+.|+++.|
T Consensus        13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            34455666666554 23 367778888888999988   667999999888 323 5  344566677778999999999


Q ss_pred             hHHHHHHHhhcCCchhhH
Q 036775          232 DPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~  249 (293)
                      .+.++.+.+..|.+....
T Consensus        91 ~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhcCCCCHHHH
Confidence            999999999998775543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.96  E-value=0.7  Score=39.89  Aligned_cols=56  Identities=7%  Similarity=-0.065  Sum_probs=40.9

Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      .+....+.|+++.+...++.+.........-.-.+..++...|+.++|..+|..+.
T Consensus       291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            33444567899999888887766444345556677788888899999999888764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.87  E-value=0.11  Score=32.96  Aligned_cols=66  Identities=5%  Similarity=-0.156  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-----CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-----EAEPNEATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      +..-+..|-..+.+.|++..|...|+...+..     ...+....+..+..++.+.|+++.|...++.+.+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44455667777888888888888888776531     0123455666666666677777777776666655

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.77  E-value=0.079  Score=33.19  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      +.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+  +...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence            5667788888888889999999999999999999999999999999986433  44556877764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.76  E-value=0.27  Score=33.54  Aligned_cols=52  Identities=15%  Similarity=0.075  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775           92 GDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD  143 (293)
Q Consensus        92 ~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  143 (293)
                      +++++|.++|+.+.+..   ...|....+--.+.|+.+.|.+++.+....+.+|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            45555555555543210   11233333344556777777777777666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.76  E-value=0.13  Score=39.42  Aligned_cols=90  Identities=12%  Similarity=-0.016  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhhhCCc-----ccHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC-CChhH
Q 036775           94 VGIAIQVFNMLAYKDM-----ISWSTVISGLAMN-----GCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-GLVDQ  162 (293)
Q Consensus        94 ~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~  162 (293)
                      ...|...+++..+-|.     ..|..+...|.+.     |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            5667777777776544     3788888888884     89999999999988864432366677777777774 88999


Q ss_pred             HHHHHHHhhhhcCCC--cchhHHH
Q 036775          163 GLILFKAMSTVYEIV--PQTQHYA  184 (293)
Q Consensus       163 a~~~~~~~~~~~~~~--~~~~~~~  184 (293)
                      +.+.+++... ....  |+....+
T Consensus       259 a~~~L~kAL~-a~p~~~P~~~lan  281 (301)
T 3u64_A          259 FDEALDRALA-IDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHH-CCGGGCSSCHHHH
T ss_pred             HHHHHHHHHc-CCCCCCCChhHHH
Confidence            9999998886 3433  4443333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.73  E-value=0.1  Score=36.24  Aligned_cols=69  Identities=9%  Similarity=0.000  Sum_probs=40.7

Q ss_pred             CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH-------HHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775            2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE-------ATLVNVLSACSSISALSFGQYVHSYIST   70 (293)
Q Consensus         2 p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~   70 (293)
                      |+.+...+-.-+..+...|.++.|+-+.+.+....+..|+.       .++..+..++...+++..|...|++..+
T Consensus        16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            33344445556677777888888877777654432122331       2455566667778888888888877644

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.64  E-value=0.2  Score=34.19  Aligned_cols=110  Identities=7%  Similarity=0.042  Sum_probs=52.5

Q ss_pred             cHhHHHHHHHHHhcCCCh------hHHHHHHHHhhhhcCCCcchh-HHHHHHH------HHHhcCChHHHHHHHHhC-CC
Q 036775          143 DDVTFIALISACSHGGLV------DQGLILFKAMSTVYEIVPQTQ-HYACVVD------MYGRAGLLEEAEAFIREM-PI  208 (293)
Q Consensus       143 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~-~~  208 (293)
                      |..+|-..+...-+.|+.      ++..++|++...  .++|+.. .|...+.      .+...++.++|.++|+.+ .+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            455666666666666766      666677776664  4555421 1111111      112235555555555555 11


Q ss_pred             -CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775          209 -EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN  254 (293)
Q Consensus       209 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  254 (293)
                       +.-...|.....--.++|+...|.+++.+.....|.+.......+.
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~  136 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR  136 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence             0002233333333355566666666655555555444444444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.42  E-value=0.34  Score=32.43  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=81.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHH
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG   95 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   95 (293)
                      +.-.|.+++-.++..+..+..    +..-|+-+|--....-+-+-..++++.+-+    -.|..          .+|++.
T Consensus        17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFDis----------~C~NlK   78 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFDLD----------KCQNLK   78 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSCGG----------GCSCTH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh----hcCcH----------hhhcHH
Confidence            445577777777777776542    333444444444444444445555555433    22322          233333


Q ss_pred             HHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        96 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      .....+-.+- .+....+..+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+ .|
T Consensus        79 rVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG  155 (172)
T 1wy6_A           79 SVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KG  155 (172)
T ss_dssp             HHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hh
Confidence            3333332221 2334455666677777888888888877543 3456777777788888888888888888887776 45


Q ss_pred             C
Q 036775          176 I  176 (293)
Q Consensus       176 ~  176 (293)
                      +
T Consensus       156 ~  156 (172)
T 1wy6_A          156 E  156 (172)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.25  E-value=0.0039  Score=51.28  Aligned_cols=211  Identities=13%  Similarity=0.078  Sum_probs=152.5

Q ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775            3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN   82 (293)
Q Consensus         3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   82 (293)
                      ..|+..|..+|.+..+.|.+++-+..+...++.. ..|...  +.++-+|++.++..+.+++        -..|+..-..
T Consensus        80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~ID--teLi~ayAk~~rL~elEef--------l~~~N~A~iq  148 (624)
T 3lvg_A           80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVE--TELIFALAKTNRLAELEEF--------INGPNNAHIQ  148 (624)
T ss_dssp             CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTT--HHHHHHHHTSCSSSTTTST--------TSCCSSSCTH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccH--HHHHHHHHhhCcHHHHHHH--------HcCCCcccHH
Confidence            4577788999999999999999999988877754 445444  5788899999988764333        3346666667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhh------------------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAY------------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN  138 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  138 (293)
                      .+.+-|...|.++.|.-+|..+..                        .++.||..+-.+|...+.+.-|.-.--.+.-.
T Consensus       149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh  228 (624)
T 3lvg_A          149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH  228 (624)
T ss_dssp             HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred             HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence            889999999999999988877651                        27789999999999999998887766555532


Q ss_pred             CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCC-----
Q 036775          139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIE-----  209 (293)
Q Consensus       139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~-----  209 (293)
                         ||  -...++..|-..|.+++-+.+++.-..  --.....+|+-|.-.|++- +.++..+-++..    .+.     
T Consensus       229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvira  300 (624)
T 3lvg_A          229 ---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA  300 (624)
T ss_dssp             ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHH
T ss_pred             ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHH
Confidence               22  233467778899999999999998773  2345677888888888875 456666655554    211     


Q ss_pred             -chHhHHHHHHHHHHhcCChhhch
Q 036775          210 -AEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       210 -~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                       -....|.-++-.|.+..+++.|.
T Consensus       301 cE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          301 AEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhhHHHHHHHHhcchhHHHHH
Confidence             12234666666666666666543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.22  E-value=0.25  Score=30.99  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775           21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +.-+..+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.+  ......+|..++
T Consensus        25 D~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHH
Confidence            3445556666666555 6777777777777777777777777777777663  223344454444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.14  E-value=1.1  Score=36.91  Aligned_cols=92  Identities=10%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-----CCCch---HhHHHHHHHHHHhcCChhhchHHHHHHHhh---cCCc----hh
Q 036775          183 YACVVDMYGRAGLLEEAEAFIREM-----PIEAE---WSVWGALLNACRIHRNDEMFDPIRQELVNK---KGVS----VG  247 (293)
Q Consensus       183 ~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~  247 (293)
                      ...|...|...|++.+|.+++..+     +....   ...+...++.|...+++..|..+++++...   .+++    ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            345677777888888888877776     21111   234555566677888888888887776532   1222    23


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          248 TFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       248 ~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|...+..+...++|.+|.+.|.+..+
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            456667777777888888777766543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.09  E-value=0.088  Score=42.69  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             HHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCCcc
Q 036775          216 GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR-----MGLKKKTGC  283 (293)
Q Consensus       216 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  283 (293)
                      ..++..+...|+...+...++.+....|.+...|..++.++.+.|+..+|.+.|++..+     .|+.|.+.+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34556677888888888888888888888888888889999999999999888887643     488887653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.04  E-value=0.39  Score=31.71  Aligned_cols=84  Identities=14%  Similarity=0.048  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH---HHHHHHHhhhhcCCCc--chhHHHHHHHHHHhcCChHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ---GLILFKAMSTVYEIVP--QTQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~  198 (293)
                      ....+.+-|.+....|. |+..+-..+..++.++++...   ++.+++.+.+ .+ .|  .....-.|.-++.+.|++++
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            34455555555544444 566666666677777776555   7777777765 22 23  23344456667777777777


Q ss_pred             HHHHHHhC-CCCc
Q 036775          199 AEAFIREM-PIEA  210 (293)
Q Consensus       199 a~~~~~~~-~~~~  210 (293)
                      |.+.++.+ .+.|
T Consensus        93 A~~~~~~lL~~eP  105 (126)
T 1nzn_A           93 ALKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCC
Confidence            77777776 4444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.2  Score=44.10  Aligned_cols=51  Identities=8%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      +...|+++.|..+-++.....|.+..+|..|..+|...|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            678999999999999999999999999999999999999999999999986

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.72  E-value=1.2  Score=35.01  Aligned_cols=169  Identities=14%  Similarity=0.052  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL----FSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      .|.++..-|.+.+++++|++++-.-           ...+.+.|+...|-++    ++-..+.++++|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4455666788999999999987543           2345556766555444    355566788888888888888776


Q ss_pred             cCCChh-HHHHHHHHhhh---hcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775          156 HGGLVD-QGLILFKAMST---VYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE  229 (293)
Q Consensus       156 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  229 (293)
                      ....-+ .=.++.+.+..   ..|  ..-++.....+...|.+.+++.+|+.-|- .+..+....+..++..+...+...
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~  184 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH  184 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence            654321 11223333322   122  23456677788999999999999999885 354555566666655554444322


Q ss_pred             hchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       230 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ++..+              ....+--|.-.++...|..+++...+
T Consensus       185 e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          185 TAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             GHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            22211              22234456667788999888777654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=94.71  E-value=0.22  Score=33.10  Aligned_cols=63  Identities=11%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      |.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.  .+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence            455677788888888999999999999999999999999999999998743  344667877763

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.67  E-value=1.2  Score=34.72  Aligned_cols=169  Identities=12%  Similarity=0.087  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775           80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ----LFSLMIINGVFPDDVTFIALISACS  155 (293)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~  155 (293)
                      .|.++..-|.+.+++++|.+++...           ...+.+.|+...|-+    +.+-..+.+++++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4456677788889999999887644           234556677666555    4556667788999888888888776


Q ss_pred             cCCChh-HHHHHHHHhhh---hcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc---C
Q 036775          156 HGGLVD-QGLILFKAMST---VYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH---R  226 (293)
Q Consensus       156 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~  226 (293)
                      ....-+ .-.++++.+..   ..|  ...++.....+...|.+.|++.+|+.-|- .+..-+...+..++.-+...   |
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~  182 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI  182 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence            533211 22333333332   012  22466778889999999999999999887 33223455555555544333   4


Q ss_pred             ChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          227 NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       227 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...++..+              ....+--|.-.|+...|..+|+...+
T Consensus       183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33332221              12223445567888999998887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.16  E-value=1.3  Score=41.57  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=109.5

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-------------------
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-------------------  107 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------  107 (293)
                      .++..+...+..+.+.++....      +.+....-.+..+|...|++++|.++|++....                   
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            4555566667776666554432      233333455667777888888888888765311                   


Q ss_pred             -----C--cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CcH--hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCC
Q 036775          108 -----D--MISWSTVISGLAMNGCGRQALQLFSLMIINGV-F-PDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEI  176 (293)
Q Consensus       108 -----~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  176 (293)
                           +  ..=|..++..+.+.+.++.+.++-....+... . ++.  ..|..+.+++...|++++|...+-.+.. ...
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPL  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSS
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHH
Confidence                 0  01266788888888988888887776654321 1 111  2577888888999999999888877654 222


Q ss_pred             CcchhHHHHHHHHHHhc------------CChHHHHHHHHhC-------CCCchHhHHHHHHHH-HHhcCChhh-chHHH
Q 036775          177 VPQTQHYACVVDMYGRA------------GLLEEAEAFIREM-------PIEAEWSVWGALLNA-CRIHRNDEM-FDPIR  235 (293)
Q Consensus       177 ~~~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~-------~~~~~~~~~~~l~~~-~~~~~~~~~-a~~~~  235 (293)
                      +  ......|+...+..            |..++..+++..-       ...|   .|..++.+ +..+|++.. |..+|
T Consensus       970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p---~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B          970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQP---CWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp             C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCC---CHHHHhHhhhhccCChHHHHHHHH
Confidence            2  23344555544443            5566777776543       1122   34455555 566666654 45555


Q ss_pred             HHHHh
Q 036775          236 QELVN  240 (293)
Q Consensus       236 ~~~~~  240 (293)
                      +.+.+
T Consensus      1045 e~~~R 1049 (1139)
T 4fhn_B         1045 EKLSR 1049 (1139)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.62  Score=41.14  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=77.2

Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHccCCCchHHH-H-HHHHHHhcccC-cchHHHHHHHHHHhh-----cCCCCch--
Q 036775           10 TTMIGGYAERGF-CEEAVSVFQEMEKTKEAEPNEAT-L-VNVLSACSSIS-ALSFGQYVHSYISTR-----YDLSVSN--   78 (293)
Q Consensus        10 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~-~-~~ll~~~~~~~-~~~~a~~~~~~~~~~-----~~~~~~~--   78 (293)
                      ..|+..+...++ .+.|+++|+++.+.   .|.... + ..++......+ .--+|.+++.+..+.     ...++..  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            445555555666 58899999999885   344333 2 23333333322 122233333333220     1122211  


Q ss_pred             ---------hHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775           79 ---------LVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        79 ---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                               .....-...+...|+++-|+++-++...  | +-.+|..|..+|...|+++.|+-.++.+
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                     1222334556778999999999998875  4 5679999999999999999999999987

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.09  E-value=0.32  Score=39.38  Aligned_cols=57  Identities=9%  Similarity=-0.037  Sum_probs=29.8

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      .++..+...|+..++...+..+..  ..|.+...+..||.++.+.|+..+|++.|++..
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444455555555555555544  334455555555555555555555555555543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.77  E-value=0.68  Score=30.79  Aligned_cols=57  Identities=16%  Similarity=0.157  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      +..+-++.+.. ..+-|++.+..+.+.+|-+.+++..|.++|+.++.+   ...+|..+++
T Consensus        71 ElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            34445555555 566777777777777777777777777777777643   3345666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.62  E-value=0.97  Score=29.81  Aligned_cols=90  Identities=8%  Similarity=-0.125  Sum_probs=60.0

Q ss_pred             ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-c--hHhHHHHHHHHHHhcCChhhc
Q 036775          159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE---AEAFIREM-PIE-A--EWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      .+..+.+-|..... .+ .++..+-..+..++.+..+...   ++.++++. ... |  .......|.-++.+.|+++.|
T Consensus        16 ~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34455555555543 23 2666666677778888776655   88888877 323 4  223444556668899999999


Q ss_pred             hHHHHHHHhhcCCchhhHH
Q 036775          232 DPIRQELVNKKGVSVGTFA  250 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~  250 (293)
                      .+.++.+.+..|.+.....
T Consensus        94 ~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHH
Confidence            9999999988887765543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.34  E-value=1.1  Score=31.13  Aligned_cols=113  Identities=9%  Similarity=0.005  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhh-----CCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcH-hH
Q 036775           81 GNAVINMYVKCGDVGIAIQVFNMLAY-----KDM-------ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDD-VT  146 (293)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~  146 (293)
                      +..-+..+...|.++.|+-+.+.+..     ++.       .+...+.+++...|++..|...|++..+.. .-+.. .+
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34557777788888888877766542     222       145566777888888888888888864321 11111 11


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP  207 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  207 (293)
                      ...+-    .......         . .....+.+.-..+..+|.+.+++++|+.+++.++
T Consensus       103 ~~~~~----~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          103 RPSTG----NSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccccc----ccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            11110    0000000         0 1122344455557788888999999999988884

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.63  E-value=2.1  Score=35.16  Aligned_cols=94  Identities=10%  Similarity=-0.118  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHhHH--
Q 036775           79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMII---NGVFPDDVTF--  147 (293)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--  147 (293)
                      .+...+...|.+.|++++|.+.|.++...      -...+-.+++.+...+++..+...+++...   .+..|+...-  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            35678999999999999999999999864      234677888999999999999999998753   3333333211  


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          148 IALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       148 ~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ..-...+...+++..|.+.|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence            1112224567889999888887765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.07  E-value=1.8  Score=40.59  Aligned_cols=122  Identities=7%  Similarity=-0.127  Sum_probs=80.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCc----------------
Q 036775          149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEA----------------  210 (293)
Q Consensus       149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~----------------  210 (293)
                      .++..+...+..+.+.++.....      .+...--.+..+|...|++++|.+.|++.  ++..                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            34445556666666655443332      23333345677888899999999999887  1100                


Q ss_pred             -------hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775          211 -------EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV-----GTFALMSNTFAGADRWEDANKIRDEIRRMG  276 (293)
Q Consensus       211 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  276 (293)
                             -..-|..++..+.+.+.++.+.++-+...+...++.     ..|..+...+...|++++|...+-.+.+..
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~  968 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP  968 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence                   012356667778888888888888877766442221     257888899999999999988886665443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.42  E-value=2.1  Score=28.43  Aligned_cols=73  Identities=8%  Similarity=-0.020  Sum_probs=46.2

Q ss_pred             CCCCcHhHHHHHHHHHhcCCCh---hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775          139 GVFPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW  212 (293)
Q Consensus       139 g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~  212 (293)
                      +..|+..|--....++.++.+.   .+++.+++.+.+ .+..-....+-.|.-++.+.|++++|.+..+.+ .+.|+.
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            4455666655666666666554   457777777775 231112345556777888888888888888877 556643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.46  E-value=1.3  Score=33.51  Aligned_cols=52  Identities=13%  Similarity=0.145  Sum_probs=33.6

Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ...+.|+++++++....-++  .-+.|...-..++..+|-.|++++|..-++..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~   57 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS   57 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34566777777776666654  33455555666777777777777777666665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.28  E-value=15  Score=33.52  Aligned_cols=222  Identities=9%  Similarity=-0.083  Sum_probs=116.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCC------CchHHHHHHHHHHhcccCc-chHHHHHHHHHHhhcCCCCchhHH--HHH
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEA------EPNEATLVNVLSACSSISA-LSFGQYVHSYISTRYDLSVSNLVG--NAV   84 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l   84 (293)
                      -+....|.-+++..++.........      .+....-.++.-+.+-.|. -+++...+..+.. .. .+.....  .+|
T Consensus       419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~-dd-~~~~~~~AalAL  496 (963)
T 4ady_A          419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLY-ND-SATSGEAAALGM  496 (963)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-TC-CHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-cC-CHHHHHHHHHHH
Confidence            3455666666788877776654310      1112222222222322332 2344444444443 11 1111112  233


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC-Cccc--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH--HHHHHHHhcCCC
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK-DMIS--WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF--IALISACSHGGL  159 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~  159 (293)
                      ...+.-.|+.+....++..+.+. +...  .-.+.-++...|+.+.+..+.+.+... ..|....-  .++.-+|+..|+
T Consensus       497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred             hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence            44455667777777777766543 2222  223334455789999999999888764 22222222  233446778899


Q ss_pred             hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCCh-hhchHHHH
Q 036775          160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRND-EMFDPIRQ  236 (293)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~  236 (293)
                      .....+++..+.+  ....+..-...+.-++...|+.+.+.++++.+  ...|.+..-..+.-+....|+. ..+...+.
T Consensus       576 ~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            8888889999886  22333333333444555567777777777765  2344444333444444445444 45666666


Q ss_pred             HHHh
Q 036775          237 ELVN  240 (293)
Q Consensus       237 ~~~~  240 (293)
                      .+..
T Consensus       654 ~L~~  657 (963)
T 4ady_A          654 PLTK  657 (963)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            6654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.91  E-value=4.6  Score=27.22  Aligned_cols=69  Identities=7%  Similarity=-0.031  Sum_probs=37.5

Q ss_pred             CCcHhHHHHHHHHHhcCCCh---hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc
Q 036775          141 FPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA  210 (293)
Q Consensus       141 ~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~  210 (293)
                      .|+..+--....++.++.+.   .+++.+++.+.+ .+..-.....-.|.-++.+.|++++|.+..+.+ ...|
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            45555555555566655543   356666666664 221112233344555666777777776666666 3444

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=87.74  E-value=3.6  Score=25.77  Aligned_cols=86  Identities=19%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775           56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM  135 (293)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  135 (293)
                      ...++|..+-+.+.. .+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|..+++..-+.++
T Consensus        21 H~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l   95 (116)
T 2p58_C           21 HYHEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL   95 (116)
T ss_dssp             TCHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence            345566666666554 222  22222333445667777777777777777777777766543  4567777777666666


Q ss_pred             HhCCCCCcHhHH
Q 036775          136 IINGVFPDDVTF  147 (293)
Q Consensus       136 ~~~g~~p~~~~~  147 (293)
                      ...|- |....|
T Consensus        96 a~sg~-p~~q~F  106 (116)
T 2p58_C           96 ARSQD-PRIQTF  106 (116)
T ss_dssp             TTCCC-HHHHHH
T ss_pred             HhCCC-HHHHHH
Confidence            65543 344444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.44  E-value=4.1  Score=27.07  Aligned_cols=51  Identities=14%  Similarity=-0.020  Sum_probs=33.3

Q ss_pred             CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775           56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK  107 (293)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  107 (293)
                      .+...+..+++.+.+ .+........--|.-++.+.|++++|.+..+.+.+.
T Consensus        57 ~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           57 NDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            356677777777766 331122333455666788888888888888887754

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=86.01  E-value=7.8  Score=27.88  Aligned_cols=57  Identities=7%  Similarity=0.043  Sum_probs=25.4

Q ss_pred             chHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHH
Q 036775           58 LSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV  115 (293)
Q Consensus        58 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l  115 (293)
                      ...+..+|..|.. .|+-.. ...|..-...+...|++.+|.++|+...+....-...|
T Consensus        95 ~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL  152 (202)
T 3esl_A           95 FHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL  152 (202)
T ss_dssp             HHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred             cCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence            3344555555544 333322 22344444444455555555555554444443333333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=85.97  E-value=6.1  Score=26.64  Aligned_cols=72  Identities=7%  Similarity=-0.086  Sum_probs=46.3

Q ss_pred             CcchhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhh
Q 036775          177 VPQTQHYACVVDMYGRAGLL---EEAEAFIREM-PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT  248 (293)
Q Consensus       177 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  248 (293)
                      .|+..+-..+..++.+..+.   .+++.+++++ ...|  .......|.-++.+.|+++.|.++.+.+.+..|.+...
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            46666666666677776654   4566677766 2223  22334445566778888888888888888877776543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.85  E-value=7.8  Score=31.76  Aligned_cols=62  Identities=6%  Similarity=-0.068  Sum_probs=33.1

Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775           44 TLVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA  105 (293)
Q Consensus        44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  105 (293)
                      +...+...+.+.|+++.|.+.+.++... .+...-...+-.++..+...+++..+...+++..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3444555555666666666666666551 1112223344555666666666666666665554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.43  E-value=12  Score=29.47  Aligned_cols=129  Identities=9%  Similarity=-0.029  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHH----HHHHHHhhcCCCCchhHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY----VHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~   83 (293)
                      +|-++..-|.+.+++++|++++..-..                .+.+.|+...+-+    +.+-..+ .+.++|......
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~r   99 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGK   99 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence            455556666666666666665543211                1222233333222    2233333 566666666666


Q ss_pred             HHHHHHHcCCHH-HHHHHHHHhhh----------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775           84 VINMYVKCGDVG-IAIQVFNMLAY----------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS  152 (293)
Q Consensus        84 l~~~~~~~~~~~-~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  152 (293)
                      |+..+.....-+ .=..+.+++.+          -|......+...|.+.+++.+|..-|-    .|-.++..+|..++.
T Consensus       100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~  175 (336)
T 3lpz_A          100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY  175 (336)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence            666665554311 11222222221          155666777888888888888877762    233444456655555


Q ss_pred             HHhcC
Q 036775          153 ACSHG  157 (293)
Q Consensus       153 ~~~~~  157 (293)
                      -+...
T Consensus       176 ew~~~  180 (336)
T 3lpz_A          176 EWYKQ  180 (336)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.09  E-value=11  Score=28.64  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchh----HHHHHHHHHHh
Q 036775          117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ----HYACVVDMYGR  192 (293)
Q Consensus       117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~  192 (293)
                      ..+.+.|++++|++....-++..+. |...-..++..+|-.|+++.|.+-++...+.   .|+..    .|..+|.+   
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence            3456778888888888877776543 7777778888888899999998888877752   34432    33333322   


Q ss_pred             cCChHHHHH-HHHhC-----CCCchHhHHHHHHHH--HHhcCChhhchHHHHHHHhhcCCch
Q 036775          193 AGLLEEAEA-FIREM-----PIEAEWSVWGALLNA--CRIHRNDEMFDPIRQELVNKKGVSV  246 (293)
Q Consensus       193 ~g~~~~a~~-~~~~~-----~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~  246 (293)
                          +.... +|.--     --.|.. -...++.+  ....|+.+.|..+-..+.+.-|..+
T Consensus        78 ----E~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           78 ----AQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             ----HHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             ----HHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence                11111 22211     011222 23344455  3456888888888877776654443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.78  E-value=5.4  Score=24.97  Aligned_cols=86  Identities=9%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775           57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI  136 (293)
Q Consensus        57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  136 (293)
                      ..++|..+-+.+.. .+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-  -.+.|..+++..-+.++.
T Consensus        21 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           21 CHEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence            45566666666554 222  2222233344566777777777777777777777776654  356677777777776766


Q ss_pred             hCCCCCcHhHHH
Q 036775          137 INGVFPDDVTFI  148 (293)
Q Consensus       137 ~~g~~p~~~~~~  148 (293)
                      ..|- |....|.
T Consensus        96 ~sg~-p~~q~Fa  106 (115)
T 2uwj_G           96 GSSD-PALADFA  106 (115)
T ss_dssp             TCSS-HHHHHHH
T ss_pred             hCCC-HHHHHHH
Confidence            6543 3444443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.77  E-value=12  Score=29.08  Aligned_cols=62  Identities=11%  Similarity=0.016  Sum_probs=35.3

Q ss_pred             cCCCCchhHHHHHHHHHHHcCC--------HHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHH
Q 036775           72 YDLSVSNLVGNAVINMYVKCGD--------VGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFS  133 (293)
Q Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~  133 (293)
                      .+.+++......++..+.....        +.+|+++-.+...   -|+.....+...|.+.|++.+|..-|-
T Consensus        86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            5666666666666666655332        1222222222211   155667777788888888888777663

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=84.69  E-value=6.3  Score=29.53  Aligned_cols=248  Identities=9%  Similarity=-0.007  Sum_probs=111.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH---HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHH
Q 036775           10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA---TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAV   84 (293)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l   84 (293)
                      +..+...++.|+.+.+..+++.    | ..++..   .-.+.+...+..|+.+-+..++    + .|..++...  -...
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~----g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~-~g~~~~~~~~~g~t~   75 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEG----G-ANVNFQEEEGGWTPLHNAVQMSREDIVELLL----R-HGADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT----T-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----H-TTCCTTCCCTTCCCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHc----C-CCcccccCCCCCcHHHHHHHcCCHHHHHHHH----H-cCCCCcccCCCCCCH
Confidence            3456667788888766665543    3 222211   1113344445556665444444    3 354443221  1234


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH------------HHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT------------FIA  149 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------------~~~  149 (293)
                      +...+..|+.+-+..+++.-...   +...++.+. ..+..|+.+-+    +.+.+.|..++...            -.+
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t  150 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCc
Confidence            45556678877776666653332   333333333 34456665544    44444554443220            112


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCCh---HHHHHHHHhCCCCchHh--HHHHHHHH
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLL---EEAEAFIREMPIEAEWS--VWGALLNA  221 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~--~~~~l~~~  221 (293)
                      .+...+..|+.+-+..+++..    +..++   ..-.+.+..+ +..++.   .+..+++-+.+..++..  .-.+.+..
T Consensus       151 ~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~  225 (285)
T 1wdy_A          151 ALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            333344566666555555431    22222   2222333333 333442   44555554443333221  11123344


Q ss_pred             HHhcCChhhchHHHHHH-HhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          222 CRIHRNDEMFDPIRQEL-VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       222 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      ....|+.+.+..+++.. ......+..-.+. +....+.|+.+    +.+-+.+.|..|+..
T Consensus       226 A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSCCS
T ss_pred             HHHcCCHHHHHHHHhccCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCCcc
Confidence            45567666555554411 1111112212222 33334455553    444556678877764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=82.97  E-value=11  Score=27.00  Aligned_cols=168  Identities=13%  Similarity=-0.034  Sum_probs=95.7

Q ss_pred             chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHH
Q 036775           40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL  119 (293)
Q Consensus        40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~  119 (293)
                      ++...-...+..+.+.+..+....+.+ +..    .++..+-...+.++.+.++.+....+.+.+..++..+-...+.++
T Consensus        31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL  105 (211)
T 3ltm_A           31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK----DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL  105 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            455555555666666665433333333 322    346666677777888887765555555556666777777777888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775          120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA  199 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  199 (293)
                      .+.++.+.. ..+.++..   .++...-...+.++.+.+..+ +...+..+..    .++..+-...+.++.+.+. .++
T Consensus       106 ~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~  175 (211)
T 3ltm_A          106 GQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERV  175 (211)
T ss_dssp             HHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred             HHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhH
Confidence            887775443 44444443   356666666777777777654 3444444443    3556666667777777776 445


Q ss_pred             HHHHHhCCCCchHhHHHHHHHHH
Q 036775          200 EAFIREMPIEAEWSVWGALLNAC  222 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~~~  222 (293)
                      ...+..+-..++...-...+.++
T Consensus       176 ~~~L~~~l~d~~~~vr~~A~~aL  198 (211)
T 3ltm_A          176 RAAMEKLAETGTGFARKVAVNYL  198 (211)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHH
Confidence            55555441133443333334443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=82.96  E-value=9.9  Score=28.89  Aligned_cols=19  Identities=11%  Similarity=0.032  Sum_probs=9.3

Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 036775           85 INMYVKCGDVGIAIQVFNM  103 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~  103 (293)
                      +...+..|+.+-+..+++.
T Consensus        66 L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           66 LHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             HHHHTTSSSCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHC
Confidence            3444455555555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.78  E-value=19  Score=29.09  Aligned_cols=163  Identities=7%  Similarity=-0.046  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH---HHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHH--
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE---ATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVG--   81 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~--   81 (293)
                      +...|...|.+.|+.++..+++...+..=+..|-.   .....++..+.... ..+.-.++.....+ +.. .+..+|  
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~-~a~-~~~r~flr   98 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE-WAK-QEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHH-HHHHHHHH
Confidence            45567788999999999999998875532123333   34567777776543 23333333333333 111 111222  


Q ss_pred             ----HHHHHHHHHcCCHHHHHHHHHHhhhC----C-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhH
Q 036775           82 ----NAVINMYVKCGDVGIAIQVFNMLAYK----D-----MISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVT  146 (293)
Q Consensus        82 ----~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~  146 (293)
                          ..|+..|...|++.+|.+++.++.+.    |     ..+|-.-++.|...+++.++...+......  .+.+++..
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                36899999999999999999888752    2     234666778888999999999999887543  22233322


Q ss_pred             H--HHHH--HHHh-cCCChhHHHHHHHHhhh
Q 036775          147 F--IALI--SACS-HGGLVDQGLILFKAMST  172 (293)
Q Consensus       147 ~--~~ll--~~~~-~~~~~~~a~~~~~~~~~  172 (293)
                      -  ....  ..+. ..+++..|...|-+..+
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            1  1111  2245 78999999888776653

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.03  E-value=14  Score=26.53  Aligned_cols=47  Identities=9%  Similarity=-0.078  Sum_probs=22.8

Q ss_pred             hHHHHHHHHhC---CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775          196 LEEAEAFIREM---PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       196 ~~~a~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      ..++.++|..|   ++ ..-...|......+-..|++..|..+|+...+..
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~  145 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN  145 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            44555555555   11 1223334444444555555555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.47
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.38
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.37
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.32
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.91
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.4
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.13
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.77
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.76
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.68
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.63
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.31
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.09
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.07
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.53
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.52
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.36
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.42
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	80.44

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-19  Score=144.63  Aligned_cols=274  Identities=10%  Similarity=-0.023  Sum_probs=193.1

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-----------
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYD-----------   73 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------   73 (293)
                      +...+..+...|.+.|++++|+..|++..+..  +-+..++..+..++.+.|++++|...+....+...           
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence            45566666667777777777777777766642  33355666666667777777777666665544110           


Q ss_pred             -------------------------------------------------------CCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           74 -------------------------------------------------------LSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        74 -------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                                                                             .+.+...+..+...+...|++++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence                                                                   0112233444455566666777777


Q ss_pred             HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      ..+++..+.   +..+|..+...+...|++++|...+++....+.. +...+..+...+.+.|++++|...|++..+  -
T Consensus       190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~  266 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L  266 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence            777665542   3456677777788888888888888887765443 566677777888888888888888888875  2


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775          176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS  253 (293)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  253 (293)
                      .+-+..++..+...|...|++++|...++..  ....+...+..+...+...|++++|...+++..+..|.++.++..+.
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  346 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            2345567888888888888888888888877  22345567777788888899999999999998888888888899999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          254 NTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       254 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      .++.+.|++++|.+.|++..+  +.|+....+
T Consensus       347 ~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~  376 (388)
T d1w3ba_         347 SVLQQQGKLQEALMHYKEAIR--ISPTFADAY  376 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHT--TCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence            999999999999999988765  566654433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-18  Score=139.96  Aligned_cols=264  Identities=12%  Similarity=0.053  Sum_probs=221.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      +...+.+.|++++|++.|+++.+..  +-+...+..+..++.+.|++++|...++.+.+  ..|.+..++..+..+|.+.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHhhhh
Confidence            4456788999999999999998852  44577888888999999999999999999987  3456678899999999999


Q ss_pred             CCHHHHHHHHHHhhhC----------------------------------------------------------------
Q 036775           92 GDVGIAIQVFNMLAYK----------------------------------------------------------------  107 (293)
Q Consensus        92 ~~~~~A~~~~~~~~~~----------------------------------------------------------------  107 (293)
                      |++++|+..+....+.                                                                
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            9999999988776521                                                                


Q ss_pred             -------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch
Q 036775          108 -------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT  180 (293)
Q Consensus       108 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  180 (293)
                             +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++.....  .+.+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~  237 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA  237 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred             hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhhHH
Confidence                   1134555667778889999999999998876433 5678888999999999999999999998862  24556


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      ..+..+...+.+.|++++|...|++. ...| +...+..+...+...|+.++|...++......|.+...+..+..++..
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            77888999999999999999999987 4445 456788899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775          259 ADRWEDANKIRDEIRRMGLKKKTGCS  284 (293)
Q Consensus       259 ~g~~~~a~~~~~~m~~~~~~p~~~~~  284 (293)
                      .|++++|.+.|++..+  +.|+....
T Consensus       318 ~~~~~~A~~~~~~al~--~~p~~~~~  341 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALE--VFPEFAAA  341 (388)
T ss_dssp             TTCHHHHHHHHHHHTT--SCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHH
Confidence            9999999999998765  55665443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.1e-16  Score=121.15  Aligned_cols=250  Identities=11%  Similarity=-0.062  Sum_probs=190.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      ....+.+.|++++|+..|+++.+..  +-+...|..+..++...|+++.|...+.+..+  -.|-+...+..+...|...
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc--ccccccccccccccccccc
Confidence            4556889999999999999999852  34577899999999999999999999999987  3455677888999999999


Q ss_pred             CCHHHHHHHHHHhhhCCc------------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHH
Q 036775           92 GDVGIAIQVFNMLAYKDM------------------ISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALIS  152 (293)
Q Consensus        92 ~~~~~A~~~~~~~~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~  152 (293)
                      |++++|.+.+++....+.                  ......+..+...+.+.+|.+.|.+..+... .++...+..+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            999999999998864311                  1111223344455677888888888776432 335677888888


Q ss_pred             HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh
Q 036775          153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM  230 (293)
Q Consensus       153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~  230 (293)
                      .+...|++++|...++.....  .+-+...|..+..+|...|++++|.+.|++. ...| +...|..+..+|...|++++
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            899999999999999998862  2345678888999999999999999999887 4444 45578888889999999999


Q ss_pred             chHHHHHHHhhcCCchh-----------hHHHHHHHHhcCCCHHHHHH
Q 036775          231 FDPIRQELVNKKGVSVG-----------TFALMSNTFAGADRWEDANK  267 (293)
Q Consensus       231 a~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~  267 (293)
                      |...|++..+..|.+..           .|..+-.++...|+.+.+..
T Consensus       259 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         259 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999988875543322           34555666666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.1e-16  Score=121.53  Aligned_cols=226  Identities=8%  Similarity=-0.064  Sum_probs=183.3

Q ss_pred             HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC
Q 036775           47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG  123 (293)
Q Consensus        47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~  123 (293)
                      -....+.+.|++++|...|+.+.+  ..|.+..+|..+..+|...|++++|...|++..+.   +...|..+..++...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            455568899999999999999987  55667888999999999999999999999988753   5667888999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCC--------------cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFP--------------DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM  189 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p--------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (293)
                      ++++|.+.+++........              +.......+..+...+...+|...+....+...-.++..++..+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            9999999999987653210              00011112222334466778888888877643334566788889999


Q ss_pred             HHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHH
Q 036775          190 YGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK  267 (293)
Q Consensus       190 ~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  267 (293)
                      +...|++++|+..|++. ...| +...|..+...+...|++++|...+++..+..|.++.+|..+..+|.+.|++++|.+
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999987 3344 456788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 036775          268 IRDEIRR  274 (293)
Q Consensus       268 ~~~~m~~  274 (293)
                      .|++..+
T Consensus       262 ~~~~al~  268 (323)
T d1fcha_         262 HFLEALN  268 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7.7e-11  Score=92.67  Aligned_cols=263  Identities=11%  Similarity=-0.076  Sum_probs=191.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCch---HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC----chhHHHHH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPN---EATLVNVLSACSSISALSFGQYVHSYISTRYDLSV----SNLVGNAV   84 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l   84 (293)
                      ....+...|++++|++++++.....+..+.   ...+..+..++...|++++|...++...+.....+    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            345678899999999999998774211111   23566677889999999999999998876221111    12345677


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC-------C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCcHhHHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK-------D----MISWSTVISGLAMNGCGRQALQLFSLMIING----VFPDDVTFIA  149 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~-------~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~  149 (293)
                      ...+...|++..+...+.+....       .    ...+..+...+...|+++.+...+.......    ......++..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            78899999999999999876531       1    1245567788899999999999998887532    2233455666


Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhcCCC---c--chhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-----chHhHHHHH
Q 036775          150 LISACSHGGLVDQGLILFKAMSTVYEIV---P--QTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-----AEWSVWGAL  218 (293)
Q Consensus       150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-----~~~~~~~~l  218 (293)
                      ....+...++...+...+........-.   +  ....+..+...+...|++++|...++.. ...     .....+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            6677788899999888887765422111   1  1234566777888999999999999987 211     123356667


Q ss_pred             HHHHHhcCChhhchHHHHHHHhhc------CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          219 LNACRIHRNDEMFDPIRQELVNKK------GVSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       219 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      ...+...|+++.|...++......      +....++..+..+|.+.|++++|.+.+++..+
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788999999999999998876422      33456788899999999999999999987654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=7e-11  Score=91.62  Aligned_cols=217  Identities=6%  Similarity=-0.056  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHhc--------------ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775           22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACS--------------SISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus        22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      .+.+..+|+++...  .+.++..|...+.-+-              ..+..+++..++++..+ ...+.+...|...+..
T Consensus        32 ~~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~-~~~p~~~~l~~~ya~~  108 (308)
T d2onda1          32 TKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-TLLKKNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT-TTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHH-HcCCCCHHHHHHHHHH
Confidence            45678889888776  3455566655554332              22345778889998876 3455566778888899


Q ss_pred             HHHcCCHHHHHHHHHHhhhC---C-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH-HhcCCChhH
Q 036775           88 YVKCGDVGIAIQVFNMLAYK---D-MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CSHGGLVDQ  162 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~  162 (293)
                      +.+.|++++|..+|+++.+.   + ..+|...+..+.+.|+.+.|.++|.++.+.+.. +...|...... +...|+.+.
T Consensus       109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~  187 (308)
T d2onda1         109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHH
Confidence            99999999999999998753   2 235888888899999999999999998877544 33344333332 345688999


Q ss_pred             HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCch--HhHHHHHHHHHHhcCChhhchHHHH
Q 036775          163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE--WSVWGALLNACRIHRNDEMFDPIRQ  236 (293)
Q Consensus       163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~  236 (293)
                      |..+|+.+...  .+.+...|...++.+.+.|+++.|..+|++.    +..|+  ...|...+.--...|+.+.+..+++
T Consensus       188 a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999863  4456678888999999999999999999986    33443  3468888887788899999999998


Q ss_pred             HHHhhcCC
Q 036775          237 ELVNKKGV  244 (293)
Q Consensus       237 ~~~~~~~~  244 (293)
                      ++.+..|.
T Consensus       266 r~~~~~~~  273 (308)
T d2onda1         266 RRFTAFRE  273 (308)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHCcc
Confidence            88776653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.7e-11  Score=91.58  Aligned_cols=193  Identities=8%  Similarity=-0.011  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775            6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAV   84 (293)
Q Consensus         6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l   84 (293)
                      ...|+.+-..+.+.+.+++|+++++++.+..  |-+...|+....++...+ ++++|...++...+  ..|-+..+|..+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~  118 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHH
Confidence            3445555556666677777777777777742  333445566555655554 46777777777665  345566667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC--
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL--  159 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--  159 (293)
                      ...+.+.|++++|++.++++.+.   +..+|..+...+...|++++|++.++++.+.++. +...|+.+...+.+.+.  
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence            77777777777777777776653   4556666677777777777777777777665443 45555555444444333  


Q ss_pred             ----hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          160 ----VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       160 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                          +++|...+....+.  .+.+...|..+...+... ..+++.+.++..
T Consensus       198 ~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~  245 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQL  245 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence                45566666665541  233445555554444332 234444444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.5e-11  Score=91.33  Aligned_cols=226  Identities=9%  Similarity=-0.001  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775           42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYK---DMISWSTVIS  117 (293)
Q Consensus        42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~  117 (293)
                      ...|+.+...+.+.+..++|.++++.+.+  -.|-+...|+....++...| ++++|+..+++..+.   +..+|+.+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            44666777778888999999999999988  45566778899998988876 599999999998753   5678999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC--
Q 036775          118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL--  195 (293)
Q Consensus       118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  195 (293)
                      .+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|.+.++.+.+.  -+.+...|+.+..++.+.+.  
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence            999999999999999999987554 7889999999999999999999999999973  23456778888777777666  


Q ss_pred             ----hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC--CchhhHHHHHHHHhcC--C-----
Q 036775          196 ----LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG--VSVGTFALMSNTFAGA--D-----  260 (293)
Q Consensus       196 ----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~--g-----  260 (293)
                          +++|+..+... ...| +...|+.+...+.. ...+.+...++...+..+  .++..+..++..|...  +     
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence                56788887776 4455 45566666555544 446788888888877653  3455667777776532  2     


Q ss_pred             --CHHHHHHHHHHHH
Q 036775          261 --RWEDANKIRDEIR  273 (293)
Q Consensus       261 --~~~~a~~~~~~m~  273 (293)
                        .+++|.+++..+.
T Consensus       277 ~~~~~ka~~l~~~l~  291 (315)
T d2h6fa1         277 EDILNKALELCEILA  291 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence              3455555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.4e-11  Score=93.05  Aligned_cols=222  Identities=10%  Similarity=-0.063  Sum_probs=121.9

Q ss_pred             CHHHHHHHHHHHHHccCCCc--hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775           21 FCEEAVSVFQEMEKTKEAEP--NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI   98 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   98 (293)
                      +.+.++.-+++........+  ...+|..+..++.+.|++++|...|+...+  -.|.+..+|..+..+|.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~--l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc--cCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            44556666666655421122  123566666677778888888888888776  34556667777788888888888888


Q ss_pred             HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      +.|+++.+.   +..+|..+..++...|++++|.+.|++..+.... +......+..++.+.+..+.+..+......   
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  167 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---  167 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---
Confidence            888777653   4456777777777788888888888777665332 333333333344444444444444444432   


Q ss_pred             CCcchhHHHHHHHHHHhcCC----hHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775          176 IVPQTQHYACVVDMYGRAGL----LEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  249 (293)
                      ..++...+. ++..+.....    .+.+...+... ...|+ ..+|..+...+...|+++.|...+++.....|.+..-|
T Consensus       168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         168 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            112221122 2222211111    11222211111 11222 22455556666777777777777777666666554333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.9e-10  Score=89.17  Aligned_cols=212  Identities=7%  Similarity=-0.045  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH--------------cCCHHHHHHHHHHhhhC----CcccHHHHHHHHH
Q 036775           59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVK--------------CGDVGIAIQVFNMLAYK----DMISWSTVISGLA  120 (293)
Q Consensus        59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~  120 (293)
                      +.+..+|+++..  ..+.+..+|..-+..+.+              .+..++|..+|++..+.    +...|...+....
T Consensus        33 ~Rv~~vyerAl~--~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            446667777776  445566666555544332              23457888999987642    4556888889999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH-HHhcCChHHH
Q 036775          121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM-YGRAGLLEEA  199 (293)
Q Consensus       121 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a  199 (293)
                      +.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+..  ..+.+...|...... +...|+.+.|
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a  188 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhccCHHHH
Confidence            9999999999999998765544456789999999999999999999999986  233444455544443 3446899999


Q ss_pred             HHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch----hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775          200 EAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV----GTFALMSNTFAGADRWEDANKIRDEIR  273 (293)
Q Consensus       200 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~  273 (293)
                      ..+|+.+ ... .+...|...+......|+.+.|..+|++..+..+.++    ..|...+.--...|+.+.+.++++++.
T Consensus       189 ~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999998 223 3456788889999999999999999999988765433    468888888788899999999999886


Q ss_pred             H
Q 036775          274 R  274 (293)
Q Consensus       274 ~  274 (293)
                      +
T Consensus       269 ~  269 (308)
T d2onda1         269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.9e-11  Score=91.27  Aligned_cols=219  Identities=9%  Similarity=-0.095  Sum_probs=144.6

Q ss_pred             cchHHHHHHHHHHhhcCCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHH
Q 036775           57 ALSFGQYVHSYISTRYDLSV--SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQL  131 (293)
Q Consensus        57 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  131 (293)
                      +.+.+..-+++........+  ...++..+..+|.+.|++++|++.|++..+  | +..+|+.+..++.+.|++++|++.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            44455555666655222222  234677788999999999999999999885  3 667899999999999999999999


Q ss_pred             HHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc
Q 036775          132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA  210 (293)
Q Consensus       132 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~  210 (293)
                      |+++.+.... +..++..+..++...|++++|...++...+.  .+.+......+...+.+.+..+.+..+.... ...+
T Consensus        94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            9999986543 5678888889999999999999999999863  2334444444455556666655555544444 1112


Q ss_pred             hHhHHHHHHHHHHhc----CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775          211 EWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT  281 (293)
Q Consensus       211 ~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  281 (293)
                      +...++ ++..+...    +..+.+...+.......+....+|..+...+...|++++|.+.|++...  ..|+.
T Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~  242 (259)
T d1xnfa_         171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN  242 (259)
T ss_dssp             CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence            211122 22222111    1122222222222222233456788899999999999999999998775  34543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=5.6e-12  Score=99.09  Aligned_cols=260  Identities=7%  Similarity=-0.085  Sum_probs=181.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHH---HH-------hcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVL---SA-------CSSISALSFGQYVHSYISTRYDLSVSNLV   80 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll---~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   80 (293)
                      ++......+..++|++++++...   ..|+.. .|+..-   ..       +...+.+++|..+++...+  ..|.+...
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~--~~pk~~~~  109 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGT  109 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH--hCCCcHHH
Confidence            33333333445899999999988   446644 343222   22       2234567888999998877  45667777


Q ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHhhhCC---cccHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           81 GNAVINMYVKCG--DVGIAIQVFNMLAYKD---MISWST-VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        81 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~---~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      |..+..++...+  ++++|...++++.+.+   ...+.. ....+...+.+++|+..++.+....+. +...|..+...+
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~  188 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            877877777766  4889999999987643   344443 346677789999999999999887654 778888888899


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhch
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      .+.|++++|...++.....   .|+.   ..+...+...+..+++...+...  ...++...+..+...+...++.+.+.
T Consensus       189 ~~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            9999988887766655541   1221   12333455566666777666655  22233334555666677778888888


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW  285 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  285 (293)
                      ..+.+..+..|.+..++..+..++.+.|++++|.+.+++..+  +.|+...||
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~  313 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL  313 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHH
Confidence            888888888888888888899999999999999999998876  566655554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.7e-10  Score=90.45  Aligned_cols=231  Identities=8%  Similarity=-0.083  Sum_probs=170.6

Q ss_pred             HHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhccc--CcchHHHHHHHHHHhhcCCCCchhHHH-HHHHHHHHcCC
Q 036775           17 AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI--SALSFGQYVHSYISTRYDLSVSNLVGN-AVINMYVKCGD   93 (293)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~   93 (293)
                      ...|++++|+..++...+..  +-+...|..+..++...  ++++++...+..+.+  -.+++...+. .+...+...+.
T Consensus        84 ~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh--hCchhhhhhhhHHHHHHHhccc
Confidence            34456889999999998853  44555666666555554  457899999999887  3445555554 45567778899


Q ss_pred             HHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775           94 VGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM  170 (293)
Q Consensus        94 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  170 (293)
                      .++|+..++...+.   +...|+.+..++.+.|++++|...+....+.  .|+.   ......+...+..+++...+...
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~  234 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRW  234 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHH
Confidence            99999999999875   4567888888999999998887666554432  1221   22333455667778888888877


Q ss_pred             hhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhh
Q 036775          171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT  248 (293)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  248 (293)
                      ..  ..+++...+..+...+...|+.++|...+.+. ...|+ ...+..+...+...|+.++|...++++.+..|....-
T Consensus       235 l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         235 LL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             HH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence            75  33455566777888888899999999999887 55564 4577888888999999999999999999999988888


Q ss_pred             HHHHHHHHhc
Q 036775          249 FALMSNTFAG  258 (293)
Q Consensus       249 ~~~li~~~~~  258 (293)
                      |..|...+.-
T Consensus       313 ~~~L~~~~~~  322 (334)
T d1dcea1         313 LDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            8888666653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.7e-08  Score=77.68  Aligned_cols=228  Identities=8%  Similarity=-0.020  Sum_probs=164.0

Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc-----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---------Ccc
Q 036775           45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVS-----NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------DMI  110 (293)
Q Consensus        45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~  110 (293)
                      .......+...|++++|.+++++..+  ..+.+     ...+..+...|...|++++|...|++..+.         ...
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~--~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh--hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            33344557889999999999999877  22322     235677888999999999999999988642         123


Q ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--Cc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC---CCcch
Q 036775          111 SWSTVISGLAMNGCGRQALQLFSLMII----NGVF--PD-DVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQT  180 (293)
Q Consensus       111 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~  180 (293)
                      .+..+...+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...+........   .....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            566677888899999999999987653    1111  11 23555667778899999999999988875221   12223


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC----chh
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-------PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELVNKKGV----SVG  247 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~  247 (293)
                      ..+..+...+...+...++...+.+.       ...+.  ...+..+...+...|+.+.|...++...+..+.    ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            45566677788889988888777655       21221  224555566688999999999999887765532    234


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          248 TFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       248 ~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .+..+..++...|++++|.+.+++...
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566788999999999999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=8.2e-08  Score=73.25  Aligned_cols=165  Identities=10%  Similarity=-0.059  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcc---CCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC----Cchh
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTK---EAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLS----VSNL   79 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~   79 (293)
                      .|.-....|...|++++|.+.|.+.....   +.+++ ..+|..+..++.+.|++++|...++...+.....    ....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            35555566666666666666666654421   01111 2355555555666666666666665544411111    1122


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----H
Q 036775           80 VGNAVINMYVK-CGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD-----D  144 (293)
Q Consensus        80 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~  144 (293)
                      ++..+...|.. .|++++|++.|++..+-         -..++..+...+...|++++|.+.|++.........     .
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            33344444433 35666666665554321         112345555555555666666666555544321110     0


Q ss_pred             -hHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          145 -VTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       145 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                       ..+...+..+...|+++.|.+.++...+
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1122223334445555555555555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.2e-08  Score=68.17  Aligned_cols=127  Identities=10%  Similarity=0.027  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775            8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM   87 (293)
Q Consensus         8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (293)
                      .|+- -..+...|++++|++.|.++     .+|++.+|..+..++...|++++|.+.|++..+  --|.+...|..+..+
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHH
Confidence            3543 44567788899998888764     456777888888888899999999999998887  345567778888888


Q ss_pred             HHHcCCHHHHHHHHHHhhhC---C----------------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036775           88 YVKCGDVGIAIQVFNMLAYK---D----------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFP  142 (293)
Q Consensus        88 ~~~~~~~~~A~~~~~~~~~~---~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  142 (293)
                      |.+.|++++|++.|++....   +                ..++..+..++.+.|++++|.+.|....+....|
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            88999999998888876531   1                1234556667777888888888777776654443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=3e-08  Score=75.74  Aligned_cols=187  Identities=10%  Similarity=-0.003  Sum_probs=100.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhHHHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV-FPDDVTFIAL  150 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~l  150 (293)
                      ...|...|++++|.+.|.+..+-     +    ..+|..+..+|.+.|++++|.+.+++..+.    |. .....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            44566666666666666665431     1    235666666777777777777776665432    11 1112344444


Q ss_pred             HHHHh-cCCChhHHHHHHHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------CchH-hHHH
Q 036775          151 ISACS-HGGLVDQGLILFKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI-------EAEW-SVWG  216 (293)
Q Consensus       151 l~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-------~~~~-~~~~  216 (293)
                      ...|. ..|++++|.+.+++..+..   +.++ ...++..+...|...|++++|...|++. ..       .... ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            44453 3577777777776664311   1111 1234566677777777777777777665 10       1111 1223


Q ss_pred             HHHHHHHhcCChhhchHHHHHHHhhcCCc-----hhhHHHHHHHHhc--CCCHHHHHHHHHH
Q 036775          217 ALLNACRIHRNDEMFDPIRQELVNKKGVS-----VGTFALMSNTFAG--ADRWEDANKIRDE  271 (293)
Q Consensus       217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~--~g~~~~a~~~~~~  271 (293)
                      ..+..+...|+.+.|...+++..+..|..     ......++.++..  .+++++|...|++
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33444566677777777777666654321     1234445555544  3456677666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-07  Score=67.67  Aligned_cols=121  Identities=11%  Similarity=-0.052  Sum_probs=81.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL  164 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  164 (293)
                      ...+...|++++|++.|+++..++..+|..+..++...|++++|++.|++..+.... +...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence            444566777777777777776666667777777777777777777777777765443 5566777777777777777777


Q ss_pred             HHHHHhhhhc-----------CC--Ccc-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775          165 ILFKAMSTVY-----------EI--VPQ-TQHYACVVDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       165 ~~~~~~~~~~-----------~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..|++.....           +.  +++ ..++..+..+|.+.|++++|.+.++..
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7777665310           00  111 245556777788888888888887766

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=5.5e-08  Score=69.79  Aligned_cols=114  Identities=11%  Similarity=-0.131  Sum_probs=88.1

Q ss_pred             CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHH
Q 036775          142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALL  219 (293)
Q Consensus       142 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~  219 (293)
                      |+...+......+.+.|++++|+..|+...+.  .+.+...|..+..+|.+.|++++|+..|++. .+.|+ ...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            67777888888899999999999999988862  2456778888999999999999999999888 66664 55788888


Q ss_pred             HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775          220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA  257 (293)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  257 (293)
                      .+|...|+++.|...+++..+..|.+...+...+..+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            88999999999999998887766544333433344333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.2e-07  Score=64.05  Aligned_cols=87  Identities=15%  Similarity=0.032  Sum_probs=52.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775           85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD  161 (293)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  161 (293)
                      ...|.+.|++++|+..|++..+-   +...|..+..++...|++++|...|++..+.... +..+|..+..++...|+++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence            44555666666666666666542   4445666666666666666666666666654322 4456666666666666666


Q ss_pred             HHHHHHHHhhh
Q 036775          162 QGLILFKAMST  172 (293)
Q Consensus       162 ~a~~~~~~~~~  172 (293)
                      +|...+++...
T Consensus        96 eA~~~~~~a~~  106 (159)
T d1a17a_          96 AALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=3.1e-08  Score=71.15  Aligned_cols=95  Identities=9%  Similarity=-0.073  Sum_probs=82.0

Q ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHH
Q 036775          108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACV  186 (293)
Q Consensus       108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l  186 (293)
                      +...+......+.+.|++++|+..|++.....+. +...|..+..+|.+.|++++|+..|+...+   +.| +..+|..+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l   78 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL   78 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence            3344556778899999999999999999887543 788899999999999999999999999985   234 56789999


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 036775          187 VDMYGRAGLLEEAEAFIREM  206 (293)
Q Consensus       187 ~~~~~~~g~~~~a~~~~~~~  206 (293)
                      ..+|...|++++|+..|++.
T Consensus        79 g~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.4e-07  Score=60.15  Aligned_cols=94  Identities=11%  Similarity=-0.021  Sum_probs=37.3

Q ss_pred             HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhc
Q 036775          154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      +.+.|++++|+..|++..+.  -+-+...|..+..+|...|++++|+..++.. ... .+...|..+..++...|++++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence            33444444444444444431  1222333444444444444444444444443 111 1223334444444444444444


Q ss_pred             hHHHHHHHhhcCCchhhH
Q 036775          232 DPIRQELVNKKGVSVGTF  249 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~  249 (293)
                      ...+++..+..|.++..+
T Consensus        91 ~~~~~~a~~~~p~~~~~~  108 (117)
T d1elwa_          91 KRTYEEGLKHEANNPQLK  108 (117)
T ss_dssp             HHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHH
Confidence            444444444444443333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.3e-07  Score=58.94  Aligned_cols=89  Identities=9%  Similarity=-0.129  Sum_probs=51.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC
Q 036775           14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD   93 (293)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   93 (293)
                      ..+.+.|++++|+..|++..+.  .+-+...|..+..++...|++++|...+....+  -.|.+...|..+..++...|+
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHH--hccchhhHHHHHHHHHHHccC
Confidence            4455666666666666666554  233444555555556666666666666666655  234455555555666666666


Q ss_pred             HHHHHHHHHHhhh
Q 036775           94 VGIAIQVFNMLAY  106 (293)
Q Consensus        94 ~~~A~~~~~~~~~  106 (293)
                      +++|+..|++..+
T Consensus        87 ~~~A~~~~~~a~~   99 (117)
T d1elwa_          87 FEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.62  E-value=2.2e-05  Score=58.37  Aligned_cols=62  Identities=10%  Similarity=-0.062  Sum_probs=32.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHh
Q 036775            5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYIST   70 (293)
Q Consensus         5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~   70 (293)
                      |+..+..|-..+.+.+++++|++.|++..+.|    +...+..|-..+..    ..+...+...+.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            34455556666666777777777777766544    22333333333332    3344555555554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5e-07  Score=62.15  Aligned_cols=115  Identities=7%  Similarity=-0.118  Sum_probs=66.1

Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChh
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDE  229 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~  229 (293)
                      ..+.+.|++++|...|++..+.  -+-+...|..+..+|...|++++|...|+.. ...| +...|..+..++...|+++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            3455666666666666666652  1334455666666666666666666666665 3333 3345666666666666666


Q ss_pred             hchHHHHHHHhhcCCchhhHHHHHHHH--hcCCCHHHHHHH
Q 036775          230 MFDPIRQELVNKKGVSVGTFALMSNTF--AGADRWEDANKI  268 (293)
Q Consensus       230 ~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~  268 (293)
                      +|...+++.....|.++..+..+..+.  ...+.+++|...
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            666666666666666655554443332  233344444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.54  E-value=3.4e-07  Score=58.92  Aligned_cols=89  Identities=8%  Similarity=-0.102  Sum_probs=60.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775           12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC   91 (293)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   91 (293)
                      +...+.+.|++++|+..|++..+..  +-+...|..+..++.+.+++++|...++...+  ..|.+..++..+...|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence            4455667777777777777776642  33466666777777777777777777777766  3455566667777777777


Q ss_pred             CCHHHHHHHHHHh
Q 036775           92 GDVGIAIQVFNML  104 (293)
Q Consensus        92 ~~~~~A~~~~~~~  104 (293)
                      |++++|++.|++.
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            7777777777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.53  E-value=5.5e-07  Score=57.89  Aligned_cols=89  Identities=9%  Similarity=-0.099  Sum_probs=51.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775          114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA  193 (293)
Q Consensus       114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (293)
                      .+...+.+.|++++|...|++....... +..+|..+..++.+.|++++|+..++...+.  .+.+...+..+...|...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence            3444555566666666666666554332 4555666666666666666666666666541  233445566666666666


Q ss_pred             CChHHHHHHHHh
Q 036775          194 GLLEEAEAFIRE  205 (293)
Q Consensus       194 g~~~~a~~~~~~  205 (293)
                      |++++|.+.+++
T Consensus        98 g~~~~A~~~l~~  109 (112)
T d1hxia_          98 HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            666666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-06  Score=59.25  Aligned_cols=82  Identities=6%  Similarity=-0.160  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775          182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA  259 (293)
Q Consensus       182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  259 (293)
                      +|+.+..+|.+.|++++|+..++.. ...| ++..|..+..+|...|+++.|...|+...+..|.++.+...+..+..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4666777888888888888888777 4445 5557777788888888888888888888888887777777766665544


Q ss_pred             CCHH
Q 036775          260 DRWE  263 (293)
Q Consensus       260 g~~~  263 (293)
                      +...
T Consensus       144 ~~~~  147 (170)
T d1p5qa1         144 RRQL  147 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8.6e-07  Score=57.79  Aligned_cols=90  Identities=12%  Similarity=0.033  Sum_probs=36.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh---hHHHHHHHHhhhhcCCCcc-hhHHHHHHHHH
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQ-TQHYACVVDMY  190 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~  190 (293)
                      +++.+...+++++|.+.|++....+.. +..++..+..++.+.++.   ++|+.+++.+.. ....|+ ..++..+..+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHH
Confidence            344444444444444444444443222 334444444444433322   234444444432 111111 12333444444


Q ss_pred             HhcCChHHHHHHHHhC
Q 036775          191 GRAGLLEEAEAFIREM  206 (293)
Q Consensus       191 ~~~g~~~~a~~~~~~~  206 (293)
                      .+.|++++|++.|++.
T Consensus        83 ~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          83 YRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHH
Confidence            4444444444444444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.5e-06  Score=54.81  Aligned_cols=103  Identities=9%  Similarity=-0.111  Sum_probs=78.8

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCchH---hHHHHHHH
Q 036775          148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL---LEEAEAFIREM-PIEAEW---SVWGALLN  220 (293)
Q Consensus       148 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~-~~~~~~---~~~~~l~~  220 (293)
                      ..+++.+...+++++|.+.|+.....  -+.+..++..+..++.+.++   +++|+.++++. ...|+.   .++..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            35677788889999999999998862  24566788888888887554   45689999887 444433   36777888


Q ss_pred             HHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      +|...|+++.|...++++.+..|.+.......
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            89999999999999999999888776655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.1e-06  Score=54.20  Aligned_cols=56  Identities=7%  Similarity=-0.154  Sum_probs=26.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      +...+.+.|++++|+..|++..+.+.. +...+..+..+|.+.|++++|.+.++.+.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            334444444555555555444443222 34444444445555555555555554444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-05  Score=55.11  Aligned_cols=88  Identities=9%  Similarity=-0.086  Sum_probs=41.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhCC------------------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYKD------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD  144 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  144 (293)
                      .....+.+.|++++|+..|++..+-.                  ..+|+.+..+|.+.|++++|+..+++.....+. +.
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~   96 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NE   96 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-ch
Confidence            34556666677777777666554310                  012333444444444444444444444443221 33


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      .++..+..++...|++++|...|+...
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444444444444444444444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=8.3e-06  Score=56.91  Aligned_cols=120  Identities=13%  Similarity=0.044  Sum_probs=83.9

Q ss_pred             HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhc
Q 036775          152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF  231 (293)
Q Consensus       152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  231 (293)
                      ......|++++|.+.|........-.+-..        + ..+.+  +...-..+. ......+..+...+...|+++.|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w--~~~~r~~l~-~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQF--VEPFATALV-EDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTT--HHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHH--HHHHHHHHH-HHHHHHHHHHHHHHHHCCCchHH
Confidence            456788889999888888875221111000        0 00000  000000010 11234577788889999999999


Q ss_pred             hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCCcc
Q 036775          232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR-----MGLKKKTGC  283 (293)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  283 (293)
                      ...++++....|.+...|..++.+|.+.|+.++|.+.|+++.+     .|+.|.+.+
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999999999999999999999999999999999999998743     699987653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=1.5e-05  Score=55.00  Aligned_cols=89  Identities=10%  Similarity=-0.046  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhhC-------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775           83 AVINMYVKCGDVGIAIQVFNMLAYK-------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD  143 (293)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  143 (293)
                      .....+.+.|++++|+..|.++.+-                   ....|..+..++.+.|++++|+..+++..+.... +
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~  110 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N  110 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-h
Confidence            3455667777888777777665421                   2223444445555555555555555555544322 4


Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775          144 DVTFIALISACSHGGLVDQGLILFKAMST  172 (293)
Q Consensus       144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  172 (293)
                      ..+|..+..++...|++++|.+.|+...+
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            44555555555555555555555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.23  E-value=1.9e-05  Score=54.46  Aligned_cols=94  Identities=5%  Similarity=-0.097  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG  258 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  258 (293)
                      .+|+.+..+|.+.|++++|+..++.. ...| +...|..+..++...|+++.|...|+++.+..|.+......+-.+..+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34666778888889999988888887 3333 556788888888889999999999988888888888777777666655


Q ss_pred             CCCHH-HHHHHHHHHHH
Q 036775          259 ADRWE-DANKIRDEIRR  274 (293)
Q Consensus       259 ~g~~~-~a~~~~~~m~~  274 (293)
                      .+... ...+++..|.+
T Consensus       145 ~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         145 AKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            54443 34455555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.6e-07  Score=73.91  Aligned_cols=220  Identities=10%  Similarity=-0.038  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHccCCCchH-HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHHHHHHHHHHcCCHHHHHHHH
Q 036775           24 EAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVF  101 (293)
Q Consensus        24 ~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~  101 (293)
                      +|.+.|++..+   .+||. ..+..+..++...+++++|   ++++..   ..|+. ..++... .+.+ ..+..+.+.+
T Consensus         4 eA~q~~~qA~~---l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~---~dp~~a~~~~~e~-~Lw~-~~y~~~ie~~   72 (497)
T d1ya0a1           4 QSAQYLRQAEV---LKADMTDSKLGPAEVWTSRQALQDL---YQKMLV---TDLEYALDKKVEQ-DLWN-HAFKNQITTL   72 (497)
T ss_dssp             HHHHHHHHHHH---HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH---HCHHHHHHHTHHH-HHHH-HHTHHHHHHH
T ss_pred             HHHHHHHHHHH---cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH---cChhhHHHHhHHH-HHHH-HHHHHHHHHH
Confidence            67788888877   45653 3455555556666666554   555443   12221 1111111 1111 1234455555


Q ss_pred             HHhhhC----CcccHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775          102 NMLAYK----DMISWSTVISG--LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus       102 ~~~~~~----~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                      +...+.    +..-.......  ....+.++.|+..+....+.. .++...+..+...+.+.|+.+.|...++.....  
T Consensus        73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--  149 (497)
T d1ya0a1          73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--  149 (497)
T ss_dssp             HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--
T ss_pred             HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--
Confidence            555432    11111111111  122334444444443332221 124455666667777888888888777665541  


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775          176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS  253 (293)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  253 (293)
                       .| ..++..+...+...|++++|...|++. ...|+ ...|+.|...+...|+...|...|.+.....+|.+.++..|.
T Consensus       150 -~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         150 -IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             -HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             -CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence             11 246667888888888888888888887 44554 457888888888888888888888888888888888888887


Q ss_pred             HHHhcC
Q 036775          254 NTFAGA  259 (293)
Q Consensus       254 ~~~~~~  259 (293)
                      ..+.+.
T Consensus       228 ~~~~~~  233 (497)
T d1ya0a1         228 KALSKA  233 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=0.00062  Score=50.21  Aligned_cols=227  Identities=9%  Similarity=-0.083  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHH
Q 036775           41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTV  115 (293)
Q Consensus        41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l  115 (293)
                      |+..+..+...+...+++.+|.+.|++..+ .|   +...+..|...|..    ..+...|...++...++ +......+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence            455666777777889999999999999987 44   45566677777876    56899999999988876 44455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH--hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775          116 ISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFIALISAC--SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM  189 (293)
Q Consensus       116 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (293)
                      ...+..    ..+.+.|...++.....|.... ..........  ........+...+.....    ..+...+..|...
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a-~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~  151 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEG-CASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhH-HHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhh
Confidence            555543    4678999999999888765322 2221122221  234456667777776654    3456677778888


Q ss_pred             HHh----cCChHHHHHHHHhCCCCchHhHHHHHHHHHHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc---
Q 036775          190 YGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG---  258 (293)
Q Consensus       190 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---  258 (293)
                      |..    ..+...+..+++......+......+...|..    ..+.+.|...|++..+.+.  +..+..|..+|.+   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred             hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCC
Confidence            876    45677888888776323345555555555544    5689999999999877753  4566677777765   


Q ss_pred             -CCCHHHHHHHHHHHHHcCCC
Q 036775          259 -ADRWEDANKIRDEIRRMGLK  278 (293)
Q Consensus       259 -~g~~~~a~~~~~~m~~~~~~  278 (293)
                       ..+.++|.++|++-.+.|-.
T Consensus       230 ~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         230 VTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCH
T ss_pred             CccCHHHHHHHHHHHHHCcCH
Confidence             45899999999998777643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.14  E-value=1.2e-05  Score=55.62  Aligned_cols=80  Identities=5%  Similarity=-0.206  Sum_probs=60.2

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775          179 QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF  256 (293)
Q Consensus       179 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  256 (293)
                      ....+..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...|++..+..|.+......+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3456677788888888888888888877 4455 4457777888888888888888888888888887777777666554


Q ss_pred             hc
Q 036775          257 AG  258 (293)
Q Consensus       257 ~~  258 (293)
                      .+
T Consensus       156 ~~  157 (169)
T d1ihga1         156 QK  157 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.13  E-value=1.9e-05  Score=53.53  Aligned_cols=87  Identities=11%  Similarity=-0.034  Sum_probs=41.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhC-------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYK-------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD  144 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  144 (293)
                      -...+.+.|++.+|+..|.+..+.                   ...+|+.+..+|.+.|++++|++.+.+.....+. +.
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~  101 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NV  101 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch-hh
Confidence            344555666666666666655431                   0123334444444444444444444444443221 34


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          145 VTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      .+|..+..++...|++++|...|+...
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            444444444444444444444444444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.6e-06  Score=54.03  Aligned_cols=94  Identities=7%  Similarity=-0.018  Sum_probs=59.2

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch--------HhHHHH
Q 036775          147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--------WSVWGA  217 (293)
Q Consensus       147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~--------~~~~~~  217 (293)
                      +..+-..+.+.|++++|+..|++..+.  .+.+...+..+..+|.+.|++++|+..++++ .+.|+        ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            444556677777777777777777752  2345566777777777777777777777775 21111        124555


Q ss_pred             HHHHHHhcCChhhchHHHHHHHhhc
Q 036775          218 LLNACRIHRNDEMFDPIRQELVNKK  242 (293)
Q Consensus       218 l~~~~~~~~~~~~a~~~~~~~~~~~  242 (293)
                      +...+...++++.|...+++.....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            5555666667777776666655443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=3.3e-05  Score=53.78  Aligned_cols=73  Identities=11%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh----hcCCCcchhH
Q 036775          109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQTQH  182 (293)
Q Consensus       109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~  182 (293)
                      ...+..+..++.+.|++++|+..++++.+.... +...|..++.++.+.|+.++|.+.|+++.+    ..|+.|+..+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            345666777777777777777777777665443 667777777777777777777777776633    2466666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.08  E-value=5.5e-05  Score=52.04  Aligned_cols=89  Identities=8%  Similarity=-0.075  Sum_probs=41.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhhC------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775           82 NAVINMYVKCGDVGIAIQVFNMLAYK------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD  143 (293)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  143 (293)
                      ......+.+.|++++|...|++...-                  ...+|+.+..+|.+.|++++|+..+++..+... .+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~   97 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-AN   97 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc-ch
Confidence            44556666677777777776654421                  011233344444444444444444444443322 13


Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775          144 DVTFIALISACSHGGLVDQGLILFKAMS  171 (293)
Q Consensus       144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~  171 (293)
                      ...|..+..++...|++++|...|+.+.
T Consensus        98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          98 EKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444444444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.07  E-value=2.7e-05  Score=52.71  Aligned_cols=73  Identities=8%  Similarity=-0.114  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775          181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS  253 (293)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  253 (293)
                      .+|+.+..+|.+.|++++|+..++.. ...| +...|..+..++...|+++.|...|+...+..|.+..+...+-
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35556666677777777777776665 3333 4456666666677777777777777777766666655554443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=0.0016  Score=49.62  Aligned_cols=236  Identities=9%  Similarity=-0.056  Sum_probs=117.8

Q ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775            4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA   83 (293)
Q Consensus         4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   83 (293)
                      ||..--..+.+.|.+.|.++.|..+|..+..          |.-++..+.+.++++.|.++....       -+..+|..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~   74 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE   74 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHH
Confidence            4444444566667777888888888776543          445666667777777776665543       23446666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775           84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG  163 (293)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  163 (293)
                      +...+.+.....-|.-+ ......+......++..|-..|.+++...+++..... -.++...++.++..|++.+ .++.
T Consensus        75 ~~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          75 VCFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHH
Confidence            67777666655443221 1111123334456777888888888888888876533 2446667777887777754 2333


Q ss_pred             HHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CchHhHHHHHHHHHHhcCChhhch
Q 036775          164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI-----------EAEWSVWGALLNACRIHRNDEMFD  232 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~  232 (293)
                      .+.++....  .+  |   ...++..|.+.+.++++.-++..++.           .++..-....+..+.+..+.+...
T Consensus       152 ~e~l~~~s~--~y--~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~  224 (336)
T d1b89a_         152 REHLELFWS--RV--N---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY  224 (336)
T ss_dssp             HHHHHHHST--TS--C---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred             HHHHHhccc--cC--C---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence            333332211  11  1   12234444444445555544444421           112222334555566667776666


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      ++.....+..   |...+.|+......-+..+..+.+
T Consensus       225 ~~i~~yL~~~---p~~i~~lL~~v~~~~d~~r~V~~~  258 (336)
T d1b89a_         225 RAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYF  258 (336)
T ss_dssp             HHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHH
T ss_pred             HHHHHHHHcC---HHHHHHHHHHhccCCCHHHHHHHH
Confidence            6665555432   233455555555555554444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.91  E-value=2.1e-05  Score=58.40  Aligned_cols=121  Identities=12%  Similarity=0.008  Sum_probs=61.0

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHH
Q 036775          120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEE  198 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~  198 (293)
                      .+.|++++|+..+++..+..+. |...+..+...++..|++++|.+.++...+.   .|+ ...+..+...+...+..++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence            3456667777777666665443 5566666666667777777777666666642   233 2333334444433333333


Q ss_pred             HHHHHHhC--CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775          199 AEAFIREM--PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV  244 (293)
Q Consensus       199 a~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  244 (293)
                      +..-....  ...| +...+......+...|+.++|...++++.+..|.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            32222111  1112 2222233333355556666666666665555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.7e-05  Score=62.84  Aligned_cols=116  Identities=7%  Similarity=-0.119  Sum_probs=65.7

Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775           76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC  154 (293)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  154 (293)
                      ++...+..+...+.+.|+.++|...+++...++ ..++..+...+...|++++|...|++..+..+. +..+|+.+...+
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~  196 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA  196 (497)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence            344556667777777788887777776655443 235666777788888888888888888776433 557888888888


Q ss_pred             hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775          155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG  194 (293)
Q Consensus       155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  194 (293)
                      ...|+..+|...|.+...  -.+|-..++..|...+.+..
T Consensus       197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence            888888888888888775  33566677777877776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.77  E-value=0.00021  Score=48.30  Aligned_cols=64  Identities=9%  Similarity=0.032  Sum_probs=35.8

Q ss_pred             hHHHHHH--HHHHHHcCCHHHHHHHHHHHHHccCCCch----------HHHHHHHHHHhcccCcchHHHHHHHHHH
Q 036775            6 VVSWTTM--IGGYAERGFCEEAVSVFQEMEKTKEAEPN----------EATLVNVLSACSSISALSFGQYVHSYIS   69 (293)
Q Consensus         6 ~~~y~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~   69 (293)
                      ..+|..+  ...+...|++++|+..|++.....+..|+          ...|+.+..++...|++++|...++...
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3466666  44566778888888888888764322222          2234444444445555555444444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.76  E-value=1.9e-05  Score=58.69  Aligned_cols=51  Identities=12%  Similarity=-0.057  Sum_probs=25.0

Q ss_pred             ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775           54 SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY  106 (293)
Q Consensus        54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  106 (293)
                      +.|++++|...++...+  ..|.+...+..|...++..|++++|.+.|+...+
T Consensus         8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33445555555555444  3344444455555555555555555555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=5.4e-05  Score=50.65  Aligned_cols=127  Identities=12%  Similarity=0.068  Sum_probs=67.3

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC----------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775          120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG----------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDM  189 (293)
Q Consensus       120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (293)
                      -+.+.+++|.+.|+...+..+. +..++..+..++...          +.+++|+..|+...+.  -+.+..+|..+..+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHH
Confidence            3445566666666666655332 445555555555432          2334555555555541  12233455555555


Q ss_pred             HHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775          190 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR  269 (293)
Q Consensus       190 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  269 (293)
                      |...|++.            ++..         ...+.++.|...|++..+..|.+...+..|-..       .+|.+++
T Consensus        85 y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~  136 (145)
T d1zu2a1          85 YTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLH  136 (145)
T ss_dssp             HHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHH
T ss_pred             HHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHH
Confidence            54433210            0000         011235678888888888888776555555443       4667777


Q ss_pred             HHHHHcCC
Q 036775          270 DEIRRMGL  277 (293)
Q Consensus       270 ~~m~~~~~  277 (293)
                      .+..+.|+
T Consensus       137 ~e~~k~~~  144 (145)
T d1zu2a1         137 AEAYKQGL  144 (145)
T ss_dssp             HHHHHSSS
T ss_pred             HHHHHHhc
Confidence            77776664

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=0.00026  Score=47.18  Aligned_cols=73  Identities=8%  Similarity=-0.089  Sum_probs=47.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC----------cchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----------ALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      |-+.+.+++|++.|+...+.  -|.+...+..+..++...+          .+++|...++...+  --|.+..+|..+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHH
Confidence            45667789999999998885  3455667766766666443          34566666666665  3344556666666


Q ss_pred             HHHHHcC
Q 036775           86 NMYVKCG   92 (293)
Q Consensus        86 ~~~~~~~   92 (293)
                      .+|...|
T Consensus        83 ~~y~~~g   89 (145)
T d1zu2a1          83 NAYTSFA   89 (145)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            6665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.67  E-value=0.00019  Score=48.52  Aligned_cols=61  Identities=10%  Similarity=-0.051  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhcCChhhchHHHHHHHhhc-------C----CchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775          214 VWGALLNACRIHRNDEMFDPIRQELVNKK-------G----VSVGTFALMSNTFAGADRWEDANKIRDEIRR  274 (293)
Q Consensus       214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  274 (293)
                      .|+.+..+|...|+++.|...+++.....       +    .....+..+..+|...|++++|.+.|++..+
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555566655555555544321       1    1123577788999999999999999988654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00027  Score=43.22  Aligned_cols=70  Identities=9%  Similarity=-0.084  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-C-------CCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          183 YACVVDMYGRAGLLEEAEAFIREM-P-------IEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       183 ~~~l~~~~~~~g~~~~a~~~~~~~-~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      +..+...+.+.|++++|..+|++. .       ..+ ...++..+..++.+.|++++|...++++.+..|.++.+++.+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            445666666666666666666654 0       111 234566666667777777777777777777776666666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.62  E-value=0.0023  Score=40.30  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036775          213 SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK  278 (293)
Q Consensus       213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  278 (293)
                      ..++.-+.....+|.-+.-..+++.+.+...+++.....+..+|.+.|...++.+++.+..+.|++
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            345666777889999999999999988888889999999999999999999999999999998874

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=0.019  Score=43.57  Aligned_cols=241  Identities=12%  Similarity=0.089  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775            9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY   88 (293)
Q Consensus         9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~   88 (293)
                      |.-++..+.+.++++.|.+++.+.       -+..+|..+...|.+......+     ++.. .....++.....++..|
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e~~la-----~i~~-~~~~~~~d~l~~~v~~y  109 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA-----QMCG-LHIVVHADELEELINYY  109 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH-----HHTT-TTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcHHHHH-----HHHH-HHhhcCHHHHHHHHHHH
Confidence            556888999999999998887644       2455888888888776655443     2212 22333444446788889


Q ss_pred             HHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------cHhHHHHHHHHHhcC
Q 036775           89 VKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP--------DDVTFIALISACSHG  157 (293)
Q Consensus        89 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~  157 (293)
                      -..|.+++...+++....   .+...++.++..|++.+ .++..+.+..... ...+        ....|..++..|.+.
T Consensus       110 e~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         110 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            999999999999987653   25556788888888754 3444444443211 1111        112356777788888


Q ss_pred             CChhHHHHHHHHhhh----------hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCC
Q 036775          158 GLVDQGLILFKAMST----------VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN  227 (293)
Q Consensus       158 ~~~~~a~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~  227 (293)
                      |+++.|..+.-.-..          ...-..|+..|...+..|... +.+-...++..++-.-|   ...++..+.+.++
T Consensus       188 ~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~~d---~~r~V~~~~k~~~  263 (336)
T d1b89a_         188 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLD---HTRAVNYFSKVKQ  263 (336)
T ss_dssp             TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCC---HHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-CHHHHHHHHHHhccCCC---HHHHHHHHHhcCC
Confidence            888877655322110          000012333344444444432 12222333333311111   2346666778888


Q ss_pred             hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775          228 DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD  270 (293)
Q Consensus       228 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  270 (293)
                      ......+++.....+  +..+.+.|...|...++++.-.+..+
T Consensus       264 l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         264 LPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             TTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            888888888866544  34689999999999999766554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00051  Score=41.93  Aligned_cols=66  Identities=8%  Similarity=-0.012  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhcCChhhchHHHHHHHhhcCC-------chhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775          215 WGALLNACRIHRNDEMFDPIRQELVNKKGV-------SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG  282 (293)
Q Consensus       215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  282 (293)
                      +..+...+.+.|+++.|...+++..+..+.       ...++..|..++.+.|++++|.+.+++..+  +.|+..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~   80 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCH
Confidence            445777789999999999999988775422       246799999999999999999999999887  456543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.09  E-value=0.079  Score=33.86  Aligned_cols=110  Identities=12%  Similarity=-0.057  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHH
Q 036775           20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVG   95 (293)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~   95 (293)
                      .++++|++.|++..+.| ..   .....+.  .....+.++|...++...+ .|   ++..+..|...|..    ..+.+
T Consensus         7 kd~~~A~~~~~kaa~~g-~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN-EM---FGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT-CT---THHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHHCC-Ch---hhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhH
Confidence            35667777777766654 11   1122221  2233455555555555544 22   22333334444433    23445


Q ss_pred             HHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 036775           96 IAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIING  139 (293)
Q Consensus        96 ~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g  139 (293)
                      +|.++|++..+. ++.....|...|..    ..+.++|.++|++..+.|
T Consensus        77 ~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          77 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            555555544432 33333333333332    234444444444444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.23  Score=39.10  Aligned_cols=51  Identities=8%  Similarity=-0.055  Sum_probs=25.7

Q ss_pred             HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775          222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI  272 (293)
Q Consensus       222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  272 (293)
                      ....++...+...++.+.........-.-.+..++...|+.++|...|...
T Consensus       295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~  345 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            344455555555555443322222333445555566666666666665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.14  Score=32.57  Aligned_cols=13  Identities=0%  Similarity=-0.138  Sum_probs=6.1

Q ss_pred             ChhHHHHHHHHhh
Q 036775          159 LVDQGLILFKAMS  171 (293)
Q Consensus       159 ~~~~a~~~~~~~~  171 (293)
                      +.++|.+.++...
T Consensus        38 ~~~~a~~~~~~aa   50 (133)
T d1klxa_          38 NKQKLFQYLSKAC   50 (133)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhh
Confidence            4444444444444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.52  E-value=0.053  Score=32.18  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775          124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD  188 (293)
Q Consensus       124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  188 (293)
                      +.-++.+-++.+......|++....+.+.+|.+.+++..|.++++..+.+.+  ++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            5667788888888888999999999999999999999999999999986433  44556776653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.36  E-value=0.16  Score=31.92  Aligned_cols=141  Identities=12%  Similarity=0.066  Sum_probs=90.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHH
Q 036775           16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG   95 (293)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   95 (293)
                      +...|.+++-.++..+..+..    +..-|+-+|--....-+-+...++++.+-+-+.+.|=.. ...++.++...+.  
T Consensus        12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--   84 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--   84 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC--
T ss_pred             HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc--
Confidence            556788888888888877642    333444455444445555556666666544122211110 1233444443332  


Q ss_pred             HHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775           96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE  175 (293)
Q Consensus        96 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  175 (293)
                                  +....+..+..+...|+-+.-.++++.+.+ +-+|++.....+..+|.+.|...++.+++.+.-+ .|
T Consensus        85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G  150 (161)
T d1wy6a1          85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KG  150 (161)
T ss_dssp             ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-Hh
Confidence                        334456667778889999999999998766 3467888888899999999999999999988886 56


Q ss_pred             CC
Q 036775          176 IV  177 (293)
Q Consensus       176 ~~  177 (293)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            53

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.09  E-value=0.14  Score=30.38  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775           21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI   85 (293)
Q Consensus        21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   85 (293)
                      +.-++.+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.+.|  ++..+|..++
T Consensus        21 D~we~rrgmN~l~~~D-lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            4445666666666666 778888888888888888888888888887776333  3344554444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.93  E-value=0.39  Score=30.03  Aligned_cols=69  Identities=6%  Similarity=-0.041  Sum_probs=39.6

Q ss_pred             CCcHhHHHHHHHHHhcCC---ChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775          141 FPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE  211 (293)
Q Consensus       141 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~  211 (293)
                      .|+..|--....++.++.   +.++++.+++.+.+ . .+.+. ..+..|.-+|.+.|++++|.+.++.+ .+.|+
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-E-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-H-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            344445444445555443   34567777777664 2 22232 34555666777777777777777776 44454

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.45  Score=29.71  Aligned_cols=54  Identities=11%  Similarity=0.048  Sum_probs=38.8

Q ss_pred             ccCcchHHHHHHHHHHhhcCCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc
Q 036775           54 SISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDM  109 (293)
Q Consensus        54 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  109 (293)
                      ...+++++..+++.+.+  +.+.+. ..+-.|.-+|.+.|++++|.+.++.+.+.++
T Consensus        50 ~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             CHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44677888888888876  333333 3455677778889999999999988876443

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.44  E-value=5.4  Score=25.64  Aligned_cols=95  Identities=8%  Similarity=-0.071  Sum_probs=45.6

Q ss_pred             CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775          175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM  252 (293)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  252 (293)
                      |++--...|..-.+.+...|++++|-.+--..  ++-.+..|.+.+-..-.+.|...-...+|..+.+.+..|..-=.-+
T Consensus        26 ~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~~LN~~ESlEl  105 (157)
T d1bpoa1          26 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLEL  105 (157)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCCCchHHhHHH
Confidence            44433444555555555555555555555444  2333444444444333444555555555555555554443333334


Q ss_pred             HHHHhcCCCHHHHHHHH
Q 036775          253 SNTFAGADRWEDANKIR  269 (293)
Q Consensus       253 i~~~~~~g~~~~a~~~~  269 (293)
                      ++.-...|+.+-..+++
T Consensus       106 ~r~vL~q~r~~lve~Wl  122 (157)
T d1bpoa1         106 CRPVLQQGRKQLLEKWL  122 (157)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHH
Confidence            44444555555444443