Citrus Sinensis ID: 036793

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MFEITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccHHHHHcccccEEEEcccccHHHHHHHHHHHHHccccccEEEccccccccccccccccccccEEEEEEccccHHHHHHHHcccccEEEEccccccccccccccccEEEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEcccEEEEEEcccccccHHHHHHHccccccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccccEEEcccccccccccccccccccEEEEEEccccHHHHHHHHHHcccEEEEEccHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccEEEEEEcccHHHHHHHHHHHHHHccHHcccccccEEEEEEEcccccccEEEEEEccccccHHHHHHHHccccccccccEEEcccccccEEEc
Coil and Loop (DISEMBL)
MFEITHAMVAAIARAipsssimnmmkkkpavlyhypcpdgAFAALAAHLYfssssvpalffpntvynpispnnlplheiddlylldyvgpsgfvqQVSSKVSKVVILDHHktaleapiegenvsktidmersgatIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQlatkshdlnlrgigavvyrvpelqndqLVKISlrsvdsedTTAIAQefgggghrnassFMLSSAEFERWKVI
Flexible Loop (DISEMBL)
MFEITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHhktaleapiegenvsktiDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLatkshdlnlRGIGAVVYRVPELQNDQLVKislrsvdseDTTAIAQefgggghrnassfmlssaeferwkvi
Low Complexity Region (SEG)
MFEITHAMVaaiaraipsssiMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFvqqvsskvskvvILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Disordered region (IsUnstruct)
****THAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLR**************************************
Disordered Region (DISOPRED)
*****************SSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Disordered Region (DISEMBL)
MFEITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Disordered Region (DISPRO)
***************IPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFEITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q5UPH8	421	Uncharacterized protein R	N/A	no	0.837	0.672	0.246	7e-12

>sp|Q5UPH8|YR106_MIMIV Uncharacterized protein R106 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R106 PE=4 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 41/324 (12%)

Query: 17  PSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSS-----SVPALFFPNTVYNPISP 71
           P +SI N   +   VLYH  C DG  +A     YF +      +   ++ P   Y+    
Sbjct: 14  PKNSIFNK-DQVDVVLYHGYCSDGFGSAFIIWYYFKTRYGLEVADKIMYIP--CYHQKDL 70

Query: 72  NNLPLHEID-----DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKT 126
            N  L  +D     ++ + D+      + ++ +  +  ++LDHHKTA     +  N  K 
Sbjct: 71  QNFSLEFLDKIRNKNVIMCDFSYKYHLLMEIINVSNTFIVLDHHKTAQIELSKIPNDLKI 130

Query: 127 IDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGL 186
             +E+SG  I ++YF   F D         + +     +I+D D+W +++  +  F +  
Sbjct: 131 FCLEKSGVGITWEYF---FPD---------KPIPKFLAHIQDRDIWTYKVPQTSEFITYF 178

Query: 187 KDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH-SYEIVLGGEAF 245
            +   EF F L     E+ +   ++  I  G   L +++ ++ + +   SY I       
Sbjct: 179 YEQ--EFDFNLWETFLEEQI---VDKAIDCGSKWLEYQKIIMSKIIKRTSYVIQNVNNKL 233

Query: 246 GHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSV-DS 304
              L  ++    E +S+LG++L          G  + V+     +++     SLRS  D 
Sbjct: 234 SIVLYCNS---PEFKSDLGNRLLYHFP----FGDFSCVWDYSLYKDESYY--SLRSTNDR 284

Query: 305 EDTTAIAQEFGGGGHRNASSFMLS 328
            D + IA +FGGGGHRNAS    S
Sbjct: 285 YDVSVIATQFGGGGHRNASGLAFS 308

Acanthamoeba polyphaga (taxid: 5757)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224125852	338	predicted protein [Populus trichocarpa]	0.931	0.931	0.739	1e-138
449439245	337	PREDICTED: uncharacterized protein R106-	0.931	0.934	0.683	1e-129
255567307	343	conserved hypothetical protein [Ricinus	0.920	0.906	0.721	1e-128
388506546	354	unknown [Medicago truncatula]	0.931	0.889	0.680	1e-123
356560057	368	PREDICTED: uncharacterized protein R106-	0.914	0.839	0.690	1e-123
225464269	319	PREDICTED: uncharacterized protein R106	0.934	0.990	0.661	1e-120
356529438	361	PREDICTED: uncharacterized protein R106-	0.914	0.855	0.668	1e-118
357137052	349	PREDICTED: uncharacterized protein R106-	0.923	0.893	0.617	1e-115
226504970	347	uncharacterized protein LOC100274901 [Ze	0.923	0.899	0.614	1e-114
326514646	344	predicted protein [Hordeum vulgare subsp	0.920	0.904	0.615	1e-113

>gi|224125852|ref|XP_002329733.1| predicted protein [Populus trichocarpa] gi|222870641|gb|EEF07772.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/323 (73%), Positives = 283/323 (87%), Gaps = 8/323 (2%)

Query: 23  NMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDL 82
           N +KK  AVLYHYPCPDGAFAALAAHLYF ++S+PA+FFPNTVY+PI P+ LPLH+   +
Sbjct: 10  NSIKKSAAVLYHYPCPDGAFAALAAHLYFKATSLPAIFFPNTVYSPIKPDQLPLHQFSHV 69

Query: 83  YLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEA----PIEGENVSKTIDMERSGATIAY 138
           YLLD+VGPSGFVQQ+SSKV +VVILDHHKTA+E       EGENVSK IDMERSGATIA+
Sbjct: 70  YLLDFVGPSGFVQQLSSKVPRVVILDHHKTAMETLGGRSFEGENVSKVIDMERSGATIAF 129

Query: 139 DYFKNKFLDNGL----QLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFS 194
           DYFK+K L++G     ++  EF+R+  +F+YIEDGDLWRWRLENSKAFSSGLKDLN+EF+
Sbjct: 130 DYFKHKLLESGKNNYDEIIAEFDRVRRVFEYIEDGDLWRWRLENSKAFSSGLKDLNLEFN 189

Query: 195 FQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDAD 254
            QLNP LF+QLLSL+LESVISQGIVSLS KQ+LI++TL  SYEI LG  AFG CLAV+AD
Sbjct: 190 AQLNPSLFDQLLSLNLESVISQGIVSLSVKQKLIDDTLDQSYEIALGVGAFGRCLAVNAD 249

Query: 255 AVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF 314
           +V+ELRSELGHQLATKS +L LRGIGA+VYRVPEL+ND+++KISLRSVDSEDTT I++EF
Sbjct: 250 SVSELRSELGHQLATKSRNLKLRGIGAIVYRVPELENDEMLKISLRSVDSEDTTPISEEF 309

Query: 315 GGGGHRNASSFMLSSAEFERWKV 337
           GGGGHRNASSFM+SSA+FE+WKV
Sbjct: 310 GGGGHRNASSFMISSADFEQWKV 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439245|ref|XP_004137397.1| PREDICTED: uncharacterized protein R106-like [Cucumis sativus] gi|449507145|ref|XP_004162945.1| PREDICTED: uncharacterized protein R106-like [Cucumis sativus]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/335 (68%), Positives = 268/335 (80%), Gaps = 20/335 (5%)

Query: 23  NMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSS---VPALFFPNTVYNPISPNNLPLHEI 79
           +++ K  AVLYHYPCPDGAFAALAAHLYFS+ S    P LFFPNTVYNP+ P+ LPLH+I
Sbjct: 3   SVITKSTAVLYHYPCPDGAFAALAAHLYFSTVSKNQSPLLFFPNTVYNPLRPDQLPLHQI 62

Query: 80  DDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIE----GENVSKTIDMERSGAT 135
            D+YLLDYVGP GFVQ +SSKV++V+ILDHHKTALE        GENV K ID++RSGAT
Sbjct: 63  ADVYLLDYVGPFGFVQDISSKVNRVIILDHHKTALEKLTHDCSIGENVIKVIDIQRSGAT 122

Query: 136 IAYDYFKNKFLDNGL-------------QLHREFERLSLLFDYIEDGDLWRWRLENSKAF 182
           IA+DYFK K + + +             ++  EFER+  L++YIEDGDLW+W L NSKA 
Sbjct: 123 IAFDYFKQKLVQDAVANFDVDVGSSSQHKVLNEFERMRKLYEYIEDGDLWKWSLPNSKAL 182

Query: 183 SSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGG 242
           SSGLKDLNIEF   LNP LF QLLSLD+E++ISQGIVSLSHKQ+LI+  L  SY I LGG
Sbjct: 183 SSGLKDLNIEFDALLNPNLFNQLLSLDMETMISQGIVSLSHKQKLIDGVLNQSYSITLGG 242

Query: 243 EAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSV 302
            AFG CLAVDAD+V+ELRSELGHQLATKS +LN RGIGAVVYRVPEL NDQ++KISLRSV
Sbjct: 243 GAFGRCLAVDADSVSELRSELGHQLATKSQNLNFRGIGAVVYRVPELGNDQMLKISLRSV 302

Query: 303 DSEDTTAIAQEFGGGGHRNASSFMLSSAEFERWKV 337
           + EDTT I+QEFGGGGHRNASSFMLSS EF++WK+
Sbjct: 303 NEEDTTPISQEFGGGGHRNASSFMLSSTEFQKWKI 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567307|ref|XP_002524634.1| conserved hypothetical protein [Ricinus communis] gi|223536103|gb|EEF37759.1| conserved hypothetical protein [Ricinus communis]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/323 (72%), Positives = 263/323 (81%), Gaps = 12/323 (3%)

Query: 27  KKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLD 86
           KK AVLYHYPCPDGAFAALAAHLYFS++S+P LFFPNTVYNPI  ++LPLHEI  LYLLD
Sbjct: 17  KKSAVLYHYPCPDGAFAALAAHLYFSATSLPVLFFPNTVYNPIKSDHLPLHEISHLYLLD 76

Query: 87  YVGPSGFVQQVSSKVSKVVILDHHKTALEAP-------IEGENVSKTIDMERSGATIAYD 139
           + GPSGFV  VSSKV  V+ILDHHKTA+E         I   NVSK IDMERSGATIA+D
Sbjct: 77  FAGPSGFVDSVSSKVDSVIILDHHKTAMEMLGGCGSNLIVSGNVSKMIDMERSGATIAFD 136

Query: 140 YFKNKFLD--NGLQLHR---EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFS 194
           YFK K L+      L+R   EF RL  LFDYIED DLWRWRL NSKAF SGL+DLN +F+
Sbjct: 137 YFKEKLLELETTANLNRFLSEFNRLRPLFDYIEDRDLWRWRLPNSKAFGSGLEDLNFDFN 196

Query: 195 FQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDAD 254
               P LF+QLLSLDLESVISQG+VSLS KQ+LI+ETL  SYEI LGG AFGHCLA+ AD
Sbjct: 197 VLSEPSLFDQLLSLDLESVISQGMVSLSVKQKLIDETLDQSYEIALGGGAFGHCLAIKAD 256

Query: 255 AVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF 314
           +V+ELRS+LGHQLATKSHDL LR IGAVVYRVPEL NDQL+KISLRS+  EDTT I+QE+
Sbjct: 257 SVSELRSDLGHQLATKSHDLKLRAIGAVVYRVPELANDQLLKISLRSLPGEDTTHISQEY 316

Query: 315 GGGGHRNASSFMLSSAEFERWKV 337
           GGGGH+NASSFM++ AEFE+WKV
Sbjct: 317 GGGGHQNASSFMITFAEFEKWKV 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506546|gb|AFK41339.1| unknown [Medicago truncatula]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/329 (68%), Positives = 266/329 (80%), Gaps = 14/329 (4%)

Query: 23  NMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSV-PALFFPNTVYNPISPNNLPLHEIDD 81
           NM K   A+LYHYPCPDG FAALAAHLYF ++S+   LFFPNTVY+P+   +LPL+EIDD
Sbjct: 26  NMKKGSAAILYHYPCPDGVFAALAAHLYFKATSLLSPLFFPNTVYSPLRAEDLPLNEIDD 85

Query: 82  LYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEA-----PIEGENVSKTIDMERSGATI 136
           LYLLD+VGP GFVQ++S+KV +V+ILDHHKTA E+     P  GENV K IDMERSGATI
Sbjct: 86  LYLLDFVGPPGFVQEISTKVPRVIILDHHKTAFESLCRDDPSLGENVFKVIDMERSGATI 145

Query: 137 AYDYFKNKFL--DNGLQLHR-----EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDL 189
           A+DYFK K L  D G+ +++     E+ER   L+ YIED DLWRWRL NSKAFSSGLKD+
Sbjct: 146 AFDYFKEKLLNPDVGVVVNQPSVLGEYERARQLYHYIEDVDLWRWRLPNSKAFSSGLKDM 205

Query: 190 NIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCL 249
            IEF  Q+NP LF+QLLSLDL++VISQG+VSLSHKQ+LI++ L+ SYEI LG    G CL
Sbjct: 206 EIEFDAQINPSLFDQLLSLDLDTVISQGMVSLSHKQKLIDDCLSESYEIALGNGEHGRCL 265

Query: 250 AVDAD-AVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTT 308
           AV+AD A++ELRSELGHQLATKS ++ LRGIGAVVY VPEL+NDQ +KISLRSVD+EDTT
Sbjct: 266 AVNADVALSELRSELGHQLATKSQNMKLRGIGAVVYNVPELENDQKLKISLRSVDNEDTT 325

Query: 309 AIAQEFGGGGHRNASSFMLSSAEFERWKV 337
            I Q FGGGGHRNASSFML S +FE+WKV
Sbjct: 326 PIFQAFGGGGHRNASSFMLKSEDFEQWKV 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560057|ref|XP_003548312.1| PREDICTED: uncharacterized protein R106-like [Glycine max]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/320 (69%), Positives = 262/320 (81%), Gaps = 11/320 (3%)

Query: 29  PAVLYHYPCPDGAFAALAAHLYF-SSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDY 87
           PA+LYHYPCPDGAFAALAAHLYF ++SS   LFFPNTV+NP+S  +LPL+EI DLYLLD+
Sbjct: 49  PAILYHYPCPDGAFAALAAHLYFKATSSFSPLFFPNTVFNPLSAEDLPLNEIGDLYLLDF 108

Query: 88  VGPSGFVQQVSSKVSKVVILDHHKTALE----APIEGENVSKTIDMERSGATIAYDYFKN 143
           VGP GFVQ++S+KV +V++LDHHKTALE        GENV K IDMERSGATIA+DYFK+
Sbjct: 109 VGPDGFVQEISTKVPRVIVLDHHKTALERLGNEASLGENVVKVIDMERSGATIAFDYFKD 168

Query: 144 KFLDNGLQLH-----REFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLN 198
           K     + +       EFER+  LF YIEDGDLWRWRL NSKAF SGLKDL+IEF  + N
Sbjct: 169 KIFSPDVAVKHPSILEEFERVRKLFLYIEDGDLWRWRLPNSKAFRSGLKDLDIEFDARKN 228

Query: 199 PCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDAD-AVA 257
           P LF+QLLSLDL+++IS G VSLS KQ+LI++ L  SYEI LG   FG+CLAV+AD A++
Sbjct: 229 PSLFDQLLSLDLDNIISTGTVSLSDKQKLIDDCLRKSYEIALGNAEFGYCLAVNADTALS 288

Query: 258 ELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGG 317
           ELRSELGHQLATKS  +NLRGIGAVVY VPEL+NDQ +KISLRSV++EDTT I+QEFGGG
Sbjct: 289 ELRSELGHQLATKSQKMNLRGIGAVVYNVPELENDQRLKISLRSVENEDTTPISQEFGGG 348

Query: 318 GHRNASSFMLSSAEFERWKV 337
           GHRNASSFML++ EFE+WKV
Sbjct: 349 GHRNASSFMLTADEFEKWKV 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464269|ref|XP_002271336.1| PREDICTED: uncharacterized protein R106 [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/319 (66%), Positives = 256/319 (80%), Gaps = 3/319 (0%)

Query: 22  MNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDD 81
           M+ +    AVLYHYPCPDGAFAALAAHLY  ++S P LFFPN VY+P+S ++LPL +I  
Sbjct: 1   MSHLPNAAAVLYHYPCPDGAFAALAAHLYLRATSTPTLFFPNRVYSPVSTHHLPLPQISH 60

Query: 82  LYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALE--APIEGENVSKTIDMERSGATIAYD 139
           LYLLD+ GP  F+ QVS  V +V +LDHHKTAL+        N  K ID+ RSGATIA+D
Sbjct: 61  LYLLDFAGPPDFLPQVSPNVPQVTVLDHHKTALQLLQSWNPSNALKVIDVGRSGATIAFD 120

Query: 140 YFKNKFLDNGL-QLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLN 198
           YFK + ++ GL  +  EFER+  +F+Y+EDGDLWRW LENSKAFSSGL D+N+EF   LN
Sbjct: 121 YFKQRAVEEGLLDVAGEFERVRRVFEYVEDGDLWRWGLENSKAFSSGLNDMNLEFDVGLN 180

Query: 199 PCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAE 258
           P LF+QLLSLDLE+VI++G+VSLS KQ LI+E L  SYEI LGG  FGHCLAV+AD+++E
Sbjct: 181 PSLFDQLLSLDLETVINEGMVSLSKKQVLIDEALEQSYEIALGGGTFGHCLAVNADSISE 240

Query: 259 LRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGG 318
           LRSELGHQLA+KS +L LRGIGAVVYRVPEL+NDQ +KISLRSVD EDTT I+QE+GGGG
Sbjct: 241 LRSELGHQLASKSCNLKLRGIGAVVYRVPELKNDQFLKISLRSVDKEDTTTISQEYGGGG 300

Query: 319 HRNASSFMLSSAEFERWKV 337
           HRNASSFMLS A+F++WKV
Sbjct: 301 HRNASSFMLSPADFDKWKV 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529438|ref|XP_003533299.1| PREDICTED: uncharacterized protein R106-like [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 257/323 (79%), Gaps = 14/323 (4%)

Query: 29  PAVLYHYPCPDGAFAALAAHLYFSSSSV-PALFFPNTVYNPISPNNLPLHEIDDLYLLDY 87
           PA+LY YPC DG FAALAAHLYF ++S+   LFFPNTVYNP+S  +LPL+EI DLYLLD+
Sbjct: 39  PAILYLYPCLDGVFAALAAHLYFKATSLLSPLFFPNTVYNPLSAEDLPLNEIGDLYLLDF 98

Query: 88  VGPSGFVQQVSSKVSKVVILDHHKTALEA----PIEGENVSKTIDMERSGATIAYDYFKN 143
           VGP GFVQ++S+KV +V++LDHHK+ALE        GENV K IDMERSGATIA+DYFK+
Sbjct: 99  VGPDGFVQEISTKVPRVIVLDHHKSALEMLGNEASLGENVVKVIDMERSGATIAFDYFKD 158

Query: 144 KFLDNGL-----QLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLN 198
           K L   +      +H EFER+  LF Y EDGDLWRWR  NSKAF SGLKDLNIEF  + N
Sbjct: 159 KILSPDVAVKHPSVHEEFERVRQLFLYTEDGDLWRWRFPNSKAFGSGLKDLNIEFDARKN 218

Query: 199 PCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAV-A 257
           P LF+QLLSLDL+++IS+G +SLS KQ+LI+E L  SYEI LG   FGHCLAV+ D V +
Sbjct: 219 PSLFDQLLSLDLDNIISKGKLSLSDKQKLIDEYLRKSYEIALGNAEFGHCLAVNVDTVFS 278

Query: 258 ELRSELGHQLATKSHDLNL---RGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF 314
           ELRSELGHQLATKS  +NL   RGIGA VY VP+L+NDQ +KISLRSV++EDTT I+QEF
Sbjct: 279 ELRSELGHQLATKSQKMNLRFVRGIGAFVYNVPDLENDQRLKISLRSVENEDTTPISQEF 338

Query: 315 GGGGHRNASSFMLSSAEFERWKV 337
           GGGGHRNASSFML++ EFE+WKV
Sbjct: 339 GGGGHRNASSFMLTADEFEQWKV 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137052|ref|XP_003570115.1| PREDICTED: uncharacterized protein R106-like [Brachypodium distachyon]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/332 (61%), Positives = 251/332 (75%), Gaps = 20/332 (6%)

Query: 26  KKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLL 85
           +K  AVLYHYPCPDGAFAALAAHLYFS++++P  FFPNTVY+PI  + LP  EI D+YLL
Sbjct: 8   RKVSAVLYHYPCPDGAFAALAAHLYFSAAALPVRFFPNTVYDPIRSDGLPFDEIKDVYLL 67

Query: 86  DYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIE----GENVSKTIDMERSGATIAYDYF 141
           D+VGP GFV  ++ KV  V ILDHHKTA+E+       G+NV+K IDM+RSGATIA+D+F
Sbjct: 68  DFVGPPGFVADIAPKVESVTILDHHKTAMESLCGSAALGQNVNKVIDMQRSGATIAFDFF 127

Query: 142 KNKFLDNGLQLHR----------------EFERLSLLFDYIEDGDLWRWRLENSKAFSSG 185
           +NK L     L                    E +  LF +IEDGDLWRW + NSKAFSSG
Sbjct: 128 RNKLLTEASNLRNHGSGNAATEVKYLPDNNHEMVQKLFKFIEDGDLWRWTIPNSKAFSSG 187

Query: 186 LKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAF 245
           LKDL+IEF+   N  LF+QLL LD E VI++G V+LS KQ+LI++ L  SYEI LG   F
Sbjct: 188 LKDLDIEFNVNANGKLFDQLLELDPEQVIARGQVTLSQKQKLIDDCLEKSYEIELGCGKF 247

Query: 246 GHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSE 305
           G+CLAV+ADA+++LRSELG+QLA KS +LNLRGIGAVVY VPEL NDQ++KISLRS++ E
Sbjct: 248 GNCLAVNADAISKLRSELGNQLANKSRNLNLRGIGAVVYNVPELNNDQMLKISLRSLEQE 307

Query: 306 DTTAIAQEFGGGGHRNASSFMLSSAEFERWKV 337
           DTT+I+QE+GGGGHRNASSF+LS  EFERWKV
Sbjct: 308 DTTSISQEYGGGGHRNASSFLLSVTEFERWKV 339

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504970|ref|NP_001142629.1| uncharacterized protein LOC100274901 [Zea mays] gi|195607536|gb|ACG25598.1| hypothetical protein [Zea mays] gi|219888011|gb|ACL54380.1| unknown [Zea mays] gi|413938281|gb|AFW72832.1| hypothetical protein ZEAMMB73_959057 [Zea mays]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/332 (61%), Positives = 253/332 (76%), Gaps = 20/332 (6%)

Query: 26  KKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLL 85
           +K  AVLYHYPCPDGAFAALAAHLYFS ++ P  FFPNTVY+PI  ++LPL EI D+YLL
Sbjct: 8   QKVSAVLYHYPCPDGAFAALAAHLYFSGAAHPVRFFPNTVYDPIRSDSLPLEEIKDVYLL 67

Query: 86  DYVGPSGFVQQVSSKVSKVVILDHHKTALEA----PIEGENVSKTIDMERSGATIAYDYF 141
           D+VGP GFV+ ++ KV ++ ILDHHKTA E+       G+NV+K IDM+RSGATIA+D+F
Sbjct: 68  DFVGPPGFVEDIAPKVERITILDHHKTAFESLCVNATLGQNVTKVIDMQRSGATIAFDFF 127

Query: 142 KNKFL---------DNGLQLHR-------EFERLSLLFDYIEDGDLWRWRLENSKAFSSG 185
           +NK L         ++G  + +       + E +  LF +IEDGDLWRW++ NSKAFSSG
Sbjct: 128 RNKLLTEVSTSRGNESGKDVAKVKYVPDNKAETVHKLFKFIEDGDLWRWKIPNSKAFSSG 187

Query: 186 LKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAF 245
           LKDL+IEF+   N  LF+QLL LD E VIS G  +L  KQRLI++ L  SYEI LG   F
Sbjct: 188 LKDLDIEFNVNANNKLFDQLLELDPEHVISHGQATLLEKQRLIDDCLEKSYEISLGCGQF 247

Query: 246 GHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSE 305
           G CLAVDADA++ LRSELG+QLA+KS D NLRGIGAVVY+VPEL NDQ++K+SLRS++ E
Sbjct: 248 GSCLAVDADAISNLRSELGNQLASKSRDFNLRGIGAVVYKVPELNNDQILKVSLRSLEQE 307

Query: 306 DTTAIAQEFGGGGHRNASSFMLSSAEFERWKV 337
           DTT I+QE+GGGGHRNASSF+LS  EF+RWKV
Sbjct: 308 DTTCISQEYGGGGHRNASSFILSVTEFDRWKV 339

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326514646|dbj|BAJ96310.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/333 (61%), Positives = 251/333 (75%), Gaps = 22/333 (6%)

Query: 26  KKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLL 85
           +K  AVLYHYPCPDGAFAALAAHLYFS++++P  FFPNTVY+PI  + LP  EI+D+YLL
Sbjct: 6   RKASAVLYHYPCPDGAFAALAAHLYFSAAALPVRFFPNTVYDPIRSDGLPFDEIEDVYLL 65

Query: 86  DYVGPSGFVQQVSSKVSKVVILDHHKTALEA----PIEGENVSKTIDMERSGATIAYDYF 141
           D+VGP GFV  ++ KV  V ILDHHKTA+E+       GENV+K IDM+RSGATIA+DYF
Sbjct: 66  DFVGPPGFVADIAPKVQSVTILDHHKTAMESLCGSATLGENVNKVIDMQRSGATIAFDYF 125

Query: 142 KNKFLDNGLQLHR-----------------EFERLSLLFDYIEDGDLWRWRLENSKAFSS 184
           +NK L       R                 + E +  LF +IEDGDLWRW + NSKAFSS
Sbjct: 126 RNK-LSTEASTSRNHGSGSSATEVKYLPENKLEMVHKLFKFIEDGDLWRWTIPNSKAFSS 184

Query: 185 GLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEA 244
           GLKDL+IEF+   N  LF+QLL LD E VIS+G V+LS KQ LI++ L  S+EI LG   
Sbjct: 185 GLKDLDIEFNVNANGKLFDQLLELDPEQVISRGQVTLSKKQTLIDDCLEKSFEIALGCGQ 244

Query: 245 FGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDS 304
           FG+CLAV+ADA++ LRSELG+QLA KS + NLR IGAVVY+VPEL ND+++KISLRS++ 
Sbjct: 245 FGNCLAVNADAISMLRSELGNQLANKSRNSNLRAIGAVVYKVPELNNDEMLKISLRSLEQ 304

Query: 305 EDTTAIAQEFGGGGHRNASSFMLSSAEFERWKV 337
           EDTT+I+QE+GGGGHRNASSF+LS AEFERWKV
Sbjct: 305 EDTTSISQEYGGGGHRNASSFLLSVAEFERWKV 337

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:505006182	325	AT1G53345 "AT1G53345" [Arabido	0.934	0.972	0.592	9.4e-98
TAIR|locus:2144786	393	AT5G09580 "AT5G09580" [Arabido	0.890	0.765	0.357	1.5e-37

TAIR|locus:505006182 AT1G53345 "AT1G53345" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 192/324 (59%), Positives = 240/324 (74%)

Query:    22 MNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDD 81
             MN+  KK AVLYHYPC DG FAALAAHLYFS+ S+P+LFFPNTVY+PI+ N LPL +I  
Sbjct:     1 MNLGVKKMAVLYHYPCHDGVFAALAAHLYFSAKSIPSLFFPNTVYSPITINQLPLQDISH 60

Query:    82 LYLLDYVGPSGFXXXXXXXXXXXXILDHHKTALEA----PIEGENVSKTIDMERSGATIA 137
             LYL D+ GP GF            ILDHHKTA+++     +  +NV+  +D+ERSGATIA
Sbjct:    61 LYLFDFTGPPGFVHQVSPKVDNVVILDHHKTAIDSLGDVSLTCKNVTSVLDIERSGATIA 120

Query:   138 YDYFKNKFLDNGLQLHRE---FERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFS 194
             +DYF  K ++      +E   F+R+  +F+YIED D+W+W L  SKAF+SG+ DL IE+ 
Sbjct:   121 FDYFTQKLVEESRGSCKEMNDFKRMRRVFEYIEDADIWKWELPESKAFNSGILDLKIEYD 180

Query:   195 FQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGG-EAFGHCLAVDA 253
             F  N  LF+QLLSLD ESVI++G  SLS K +LI E L  SYEIVLGG E FG CLAV+A
Sbjct:   181 FNKNQSLFDQLLSLDHESVINRGKQSLSKKHKLIHEVLEQSYEIVLGGDEEFGRCLAVNA 240

Query:   254 DAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQE 313
             D + ELRSELG+QLA KS +L+LRG+GAVVYRVPEL ++  +KISLRSV  EDTT ++Q 
Sbjct:   241 DEITELRSELGNQLAEKSKNLSLRGVGAVVYRVPELGDENKLKISLRSVAEEDTTPVSQR 300

Query:   314 FGGGGHRNASSFMLSSAEFERWKV 337
             FGGGGH+NASSF+L+S EFE+WKV
Sbjct:   301 FGGGGHKNASSFLLNSMEFEQWKV 324

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144786 AT5G09580 "AT5G09580" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 120/336 (35%), Positives = 171/336 (50%)

Query:    23 NMMKKK-P-AVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEID 80
             N +++K P  VLY+YP   GAF+AL AHLY     +P L  P +   P    +L L   +
Sbjct:    66 NALEEKVPNLVLYNYPSFSGAFSALFAHLYHYRLRLPCLILPFSSLIPFRVEDLCLEGFE 125

Query:    81 DLYLLDYVGPSGFXXXXXXXXXXXXILDHHKTALE--APIEGENVSKT---IDMERSGAT 135
               YLLD+V P  F              DH  +AL+    I+ E+  +    +D E S + 
Sbjct:   126 RCYLLDFVVPKDFACQKTACEIV--CFDHRNSALKRIGLIKEEHKKRLKIYVDTETSSSK 183

Query:   136 IAYDYFKNKFLDNGLQLHREFERLSLL-----------FDYIEDGDLWRWRLENSKAFSS 184
               Y YF +K  D   Q   E E LSLL            DYIED DL RW L + KAFS 
Sbjct:   184 AVYKYFSSKLTD---QRSSEVEALSLLSVEDKTRVESVLDYIEDIDLRRWMLPDIKAFSF 240

Query:   185 GLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEET----LAHSYEIVL 240
             GLKD     +  +NP ++EQLL +    +I+ G    S   RLI+      L  +++I L
Sbjct:   241 GLKDWRSRINCIINPYMYEQLLKISSADLIAYGNSYFS--SRLIDAKKLLKLNKAFKIRL 298

Query:   241 GGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLR 300
             G   +G CL + AD   +L  ELG  L+ +S    LR IGAV +    +Q + L K+ LR
Sbjct:   299 GRGLYGECLGMRADGNHQLSDELGKLLSLQSSAAGLRPIGAVTF----VQRNNL-KMCLR 353

Query:   301 SVDS-EDTTAIAQEFGGGGHRNASSFMLSSAEFERW 335
             S D+  +T+ +A+ +GGGG  ++SSF++   E+ +W
Sbjct:   354 STDAITNTSEVAKAYGGGGTSSSSSFIIRMDEYNQW 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      338       314   0.00081  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  214 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.53u 0.28s 24.81t   Elapsed:  00:00:01
  Total cpu time:  24.53u 0.28s 24.81t   Elapsed:  00:00:01
  Start:  Fri May 10 07:05:01 2013   End:  Fri May 10 07:05:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01220047 hypothetical protein (339 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
COG2404	339	COG2404, COG2404, Predicted phosphohydrolase (DHH	2e-08
COG0618	332	COG0618, COG0618, Exopolyphosphatase-related prote	2e-05

>gnl|CDD|225268 COG2404, COG2404, Predicted phosphohydrolase (DHH superfamily) [General function prediction only]

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 65/317 (20%), Positives = 110/317 (34%), Gaps = 55/317 (17%)

Query: 39  DGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFV---- 94
           DG   A     +F  +   A F             +  + I +      +G +  +    
Sbjct: 11  DGYACAAVVKRFFGKNVYNANFGR------EVSARI--NSILESAEESGIGDAILISDLD 62

Query: 95  -------------QQVSSKVSKVVILDHHKTALEAPIEGEN--VSKTIDMERSGATIAYD 139
                        ++ ++K +KV  +DHHKTA E   E     VS  +D  R  A + Y+
Sbjct: 63  VNLDRFEELVEKLKEATNKGTKVKWIDHHKTANETKEEVREAGVSVYVDDSRCAAGVVYE 122

Query: 140 YFK-NKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLN 198
           Y K ++ L+  L      E+L    + +   D+W W          G +     F F  N
Sbjct: 123 YLKPHEILEPTL----FLEQLV---ELVRSVDIWLWEDYGLGMIPQGSELN--RFMFDDN 173

Query: 199 PCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAE 258
                + L  D E    +  +   +   L +E L +  +I +G +            V  
Sbjct: 174 ---QWEYLLGDGEEY--KDYLKKFNAGILWDEVLDYILQIAVGRDKIETLSNASKRVVTI 228

Query: 259 LRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVK-------ISLRS---VDSEDTT 308
              +  H +             +++ +  EL ND +V        IS RS    +     
Sbjct: 229 TIDDKKHVVEIYYRGPGGYDS-SIMGQTDELYNDFVVFVLRSDSGISDRSKNNANVNIDV 287

Query: 309 A--IAQEFGGGGHRNAS 323
           A     ++GGGGH NA+
Sbjct: 288 AEIAQVQYGGGGHPNAA 304

Length = 339

>gnl|CDD|223691 COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 60/319 (18%), Positives = 102/319 (31%), Gaps = 57/319 (17%)

Query: 38  PDG-------AFAALAAHLYFSS--------SSVPALFFPNTVYNPISPN-NLPLHEIDD 81
           PD        A A L   L  +         +      F N + + +    + PL + D 
Sbjct: 27  PDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLLGDELERIEDDPLDDYDL 86

Query: 82  LYLLDYVGPSGFVQQVSSKVSKVVIL-DHH--KTALEAPIEGENVSKTIDMER-SGATIA 137
           + ++D         Q     SK VI+ DHH     +            ID    + A I 
Sbjct: 87  VIIVDTANLPRIGDQELLLDSKKVIVIDHHPGNNDIYGDFVW------IDPSAGATAEII 140

Query: 138 YDYFKNKFLDNGLQLHREFERLSLLFDYIED-GDLWRWR-LENSKAFSSGLKDLNIEFSF 195
            +  K      G+ L       +LL     D G         ++ A ++ L +   +   
Sbjct: 141 AELLKEA----GIDLDPL-VATALLLGIRTDTGRFRYANTTADTLAAAALLVEAGADLLE 195

Query: 196 QLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADA 255
                            V+   +   S     +   +  +  IV  G      +++  D 
Sbjct: 196 -----------------VLELPLERSSETLLKLAAYILKNNRIVENG---VAYVSLVGDI 235

Query: 256 VAELRSELGHQLATKSHDLNLRGI-GAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF 314
           + E    L          L L  I  A V+ + + + D  +++S RS    +   IA +F
Sbjct: 236 LEEFGDTLAEAADFV---LLLENISTAKVWGIFKDEEDGSIRVSDRSKGIGNVNEIAFKF 292

Query: 315 GGGGHRNASSFMLSSAEFE 333
           GGGGH  A+   +     E
Sbjct: 293 GGGGHALAAGARIPLGILE 311

Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PRK14538	838	putative bifunctional signaling protein/50S riboso	100.0
COG0618	332	Exopolyphosphatase-related proteins [General funct	100.0
COG3887	655	Predicted signaling protein consisting of a modifi	99.97
COG2404	339	Predicted phosphohydrolase (DHH superfamily) [Gene	99.91
PRK05427	308	putative manganese-dependent inorganic pyrophospha	99.87
TIGR00644	539	recJ single-stranded-DNA-specific exonuclease RecJ	99.86
PRK11070	575	ssDNA exonuclease RecJ; Provisional	99.76
PF01368	145	DHH: DHH family; InterPro: IPR001667 This is a dom	99.62
COG0608	491	RecJ Single-stranded DNA-specific exonuclease [DNA	99.56
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.25
COG1227	311	PPX1 Inorganic pyrophosphatase/exopolyphosphatase	98.93
PF02272	68	DHHA1: DHHA1 domain; InterPro: IPR003156 This doma	98.6
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.55
KOG4129	377	consensus Exopolyphosphatases and related proteins	97.73
PF02724	622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	93.37
PRK14869	546	putative manganese-dependent inorganic pyrophospha	89.89
KOG2475	587	consensus CDC45 (cell division cycle 45)-like prot	80.83

>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional

Probab=100.00  E-value=6.2e-38  Score=319.73  Aligned_cols=275  Identities=14%  Similarity=0.179  Sum_probs=185.6

Q ss_pred             ccCCCcEEEecC-CCchHHHHHHHHHHHHhcCC--CCeEEeeC--C-------CCCCC-C-CCC----C-C-------CC
Q 036793           24 MMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSS--VPALFFPN--T-------VYNPI-S-PNN----L-P-------LH   77 (338)
Q Consensus        24 ~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~--~~v~~~p~--~-------~~~~~-~-~~~----~-~-------~~   77 (338)
                      .....+++++|. ||+||+|||+|++++++.++  +++.++..  .       .+..+ . ..+    + .       ..
T Consensus       365 ~~~d~ViI~gH~nPD~DAlGSalaL~~~lk~l~~~k~~~iv~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~~~~a~~~~~  444 (838)
T PRK14538        365 KKNPHCFIMGHNHTDLDSLGSMIAFYKIALTIHPDNNNYIILDEEKLDKSLTPVYHQLIKQEHKVTLNIITTQQASKMIK  444 (838)
T ss_pred             hcCCeEEEEecCCCCchHHHHHHHHHHHHHHhCCCCeEEEEEcCCCcchhHHHHHhhhhcccchhhhcccCHhhhhhccc
Confidence            344567777776 89999999999999998765  44554422  1       01000 0 001    1 0       12


Q ss_pred             CCCeEEEEeCCCChHH-HHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhccc--CCccccch
Q 036793           78 EIDDLYLLDYVGPSGF-VQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFL--DNGLQLHR  154 (338)
Q Consensus        78 ~~~~viivD~~~~~~~-~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~--~~~~~~a~  154 (338)
                      +.+++|+|||+.++.. ..++..+..++++||||+.+.+.  ..+..+++.+...|||+|++++++..+.  +++     
T Consensus       445 ~~~llIvVDts~~~Ri~~~~l~~~~~~iIVIDHHr~~~~~--i~~~l~yIep~ASST~ELV~Ell~~~~~~i~l~-----  517 (838)
T PRK14538        445 KNDLIAVLDTQTKDIVNSPELLSLTNNIIVIDHHRATEEI--IPSIFSYVDSSASSTVELLVELMGFLEKEIHIT-----  517 (838)
T ss_pred             cCCEEEEecCCChHhcCChhhhhcCCCEEEEeCCCCCCCC--CCccEEEEEcCcCcHHHHHHHHHHHcCCCCCCC-----
Confidence            4578999999998842 22444555689999999998753  2355666666566788999999976553  353     


Q ss_pred             hhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhh
Q 036793          155 EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH  234 (338)
Q Consensus       155 ~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  234 (338)
                      +.+|+++|+||++||++|+| +|+++||++|++|++.|    +|+....+++..+...+            ++...++++
T Consensus       518 ~~eAt~LyaGI~tDTg~F~~-~Tt~rTFeaAA~L~~~G----AD~~~V~~~l~~~l~~~------------~l~~~ll~~  580 (838)
T PRK14538        518 AFEASIMYAGILIDTNAFIY-RTSSRTFEVASKLKDLG----ADAIEVKSWLRKDFDKV------------LEINKLISK  580 (838)
T ss_pred             HHHHHHHHhHHHHHcCCccc-CCCHHHHHHHHHHHHcC----CCHHHHHHHHhCCHHHH------------HHHHHHHhc
Confidence            67888999999999999999 69999999999999999    66665566665554331            222233333


Q ss_pred             hhhheeccccccceEEEeccchH--HHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHh
Q 036793          235 SYEIVLGGEAFGHCLAVDADAVA--ELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQ  312 (338)
Q Consensus       235 ~~~~~~~~~~~~~~~~v~~~~~~--~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~  312 (338)
                      ....  .+ .+.  ..+..+..+  ...+.+.+.+.      .++|+.+++++. +. .++++++|+||++.+||+.||+
T Consensus       581 ~ei~--~~-~iA--ia~~~e~~~~~~~~a~~ad~Ll------~I~gv~asfV~~-e~-~d~~i~ISaRS~g~inVq~Iae  647 (838)
T PRK14538        581 MEIF--MD-RFA--IIKSEEIYDNRSFLAQVAESVL------NIQNVDAAFMIA-KI-SDNTIAISARSYNEINVQTIME  647 (838)
T ss_pred             cEEe--cC-cEE--EEEEhHHhhccchHHHHHHHHh------cccCeeEEEEEE-EE-cCCEEEEEEEeCCCCCHHHHHH
Confidence            2211  11 122  222111111  12344455544      678888876665 44 4678999999998899999999


Q ss_pred             HcCCCccccccccccchhhhccc
Q 036793          313 EFGGGGHRNASSFMLSSAEFERW  335 (338)
Q Consensus       313 ~fGGGGH~~AAG~~~~~~~~~~~  335 (338)
                      +||||||++||||++++.++++.
T Consensus       648 ~~GGGGH~~AAGaqi~~~tlee~  670 (838)
T PRK14538        648 QMEGGGHLNSAATQIKGTNIKTV  670 (838)
T ss_pred             HhCCCccHhhheEEeCCCCHHHH
Confidence            99999999999999987666554

>COG0618 Exopolyphosphatase-related proteins [General function prediction only]

Probab=100.00  E-value=4.2e-35  Score=274.56  Aligned_cols=276  Identities=18%  Similarity=0.149  Sum_probs=180.6

Q ss_pred             cCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCC---CCC------CCC--CC---CCCCCCCCeEEEEeCCC
Q 036793           25 MKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNT---VYN------PIS--PN---NLPLHEIDDLYLLDYVG   89 (338)
Q Consensus        25 ~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~---~~~------~~~--~~---~~~~~~~~~viivD~~~   89 (338)
                      ...++++++|. ||+||+|||++|+.++++.+++..+++..   ...      .+.  ..   +.+..+++.+++||+++
T Consensus        15 ~~~~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~G~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~iivDt~~   94 (332)
T COG0618          15 AHDKILILTHENPDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLLGDELERIEDDPLDDYDLVIIVDTAN   94 (332)
T ss_pred             cCCeEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEecccCCcchHhhhhhcccccccccCCCcccCCEEEEECCCC
Confidence            34566677776 89999999999999999988744443221   000      000  11   11224578999999999


Q ss_pred             ChHHHHHHhhCC-CcEEEEcCCCC-CCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhh
Q 036793           90 PSGFVQQVSSKV-SKVVILDHHKT-ALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIE  167 (338)
Q Consensus        90 ~~~~~~~l~~~~-~~viviDHH~~-~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~  167 (338)
                      .++......... .++++||||+. ++    .+++..++.+...|||+|+++++++.+++++     +..++.+|+||++
T Consensus        95 ~~ri~~~~~~~~~~~~ivIDHH~~~~~----~~~~~~~i~~~~~ataeii~~~~~~~~~~~~-----~~~At~L~~GI~t  165 (332)
T COG0618          95 LPRIGDQELLLDSKKVIVIDHHPGNND----IYGDFVWIDPSAGATAEIIAELLKEAGIDLD-----PLVATALLLGIRT  165 (332)
T ss_pred             CCCcccccccccCCceEEEeCCCCCCC----CCCceEEeCCCCchHHHHHHHHHHHcCCCcc-----HHHHHHHHhhhhh
Confidence            764322222112 58999999995 55    3567888888778999999999999998875     4567889999999


Q ss_pred             ccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccc
Q 036793          168 DGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGH  247 (338)
Q Consensus       168 Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  247 (338)
                      |||.|+|.+++++++.+|++|+.+|++..   ++.+.......+...+           +...++++... ..++  ...
T Consensus       166 DTg~F~~~~t~~~~~~~a~~L~~~g~~~~---~v~~~~~~~~~~~~~~-----------l~~~i~~~~~~-~~~g--~~~  228 (332)
T COG0618         166 DTGRFRYANTTADTLAAAALLVEAGADLL---EVLELPLERSSETLLK-----------LAAYILKNNRI-VENG--VAY  228 (332)
T ss_pred             cccccccCCCChhHHHHHHHHHhCCCCHH---HHHhhhhccCchHHHH-----------HHHHHHhhheE-eeCc--eEE
Confidence            99999999999999999999999997543   4545444344333222           21122221111 1111  110


Q ss_pred             eEEEeccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCcccccccccc
Q 036793          248 CLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFML  327 (338)
Q Consensus       248 ~~~v~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AAG~~~  327 (338)
                      . .+..+....................++.++.++.++. +. .++.+++++||++..+|+++|..||||||+.|||+++
T Consensus       229 ~-~~~~~~~~~~~~~~~~~~~~v~~l~~i~~~~v~~~~~-~~-~~~~~r~~~rs~~~~~v~~~A~~~gGGGH~~AaG~~i  305 (332)
T COG0618         229 V-SLVGDILEEFGDTLAEAADFVLLLENISTAKVWGIFK-DE-EDGSIRVSDRSKGIGNVNEIAFKFGGGGHALAAGARI  305 (332)
T ss_pred             E-EEeeehHhhhCCCHHHHHHHHHhhcCcceEEEEEEEE-ec-cCceEEEecccCCcHHHHHHHhhcCCCCCcccCeeEe
Confidence            1 1111111111111112222222234677788887777 32 2448999999998789999999999999999999999


Q ss_pred             ch
Q 036793          328 SS  329 (338)
Q Consensus       328 ~~  329 (338)
                      +.
T Consensus       306 ~~  307 (332)
T COG0618         306 PL  307 (332)
T ss_pred             cc
Confidence            86

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]

Probab=99.97  E-value=6.9e-31  Score=250.18  Aligned_cols=274  Identities=21%  Similarity=0.257  Sum_probs=189.5

Q ss_pred             cccCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCC-CCCCCC------CCC-------C-------C-CCCC
Q 036793           23 NMMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNT-VYNPIS------PNN-------L-------P-LHEI   79 (338)
Q Consensus        23 ~~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~-~~~~~~------~~~-------~-------~-~~~~   79 (338)
                      +.....++++.|. ||.|++|||+|+.++....++++.++... ...|--      +++       +       . ..+.
T Consensus       334 i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp~~~~pdveRai~~i~~~~e~~~~fit~~~A~~l~t~~  413 (655)
T COG3887         334 IKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDPEDMSPDVERAINEIEKNSEGKTRFITPSDAMELSTER  413 (655)
T ss_pred             HhhcCcEEEEccCCCChHHHHHHHHHHHHHHhcccccEEEECccccChhHHHHHHHHHhcchhhheeccHHHHhhccCCC
Confidence            3445677777787 89999999999999999888876664321 111110      000       0       0 1245


Q ss_pred             CeEEEEeCCCChHH-HHHHhhCCCcEEEEcCCCCCCCCCCCCCC-cccccCC-CCcHHHHHHHHHHhcc--cCCccccch
Q 036793           80 DDLYLLDYVGPSGF-VQQVSSKVSKVVILDHHKTALEAPIEGEN-VSKTIDM-ERSGATIAYDYFKNKF--LDNGLQLHR  154 (338)
Q Consensus        80 ~~viivD~~~~~~~-~~~l~~~~~~viviDHH~~~~~~~~~~~~-~~~~~d~-~~s~a~lv~~~l~~~~--~~~~~~~a~  154 (338)
                      .++++||++.+.-. -.++.++..++||||||...++.   +.+ +..|+.+ ..||++||+++++-+.  .++     +
T Consensus       414 sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f---~~n~~l~YiEsyASStsELVTEliqyq~~~~kl-----~  485 (655)
T COG3887         414 SLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDF---ISNPLLVYIESYASSTSELVTELIQYQPKKQKL-----S  485 (655)
T ss_pred             cEEEEEecCCcceecCHHHHHhhceEEEEecccccccc---ccchHHhhhccCcccHHHHHHHHHHhCchhccc-----c
Confidence            78999999999832 34566667789999999999874   333 2334443 4578889999988543  233     2


Q ss_pred             hhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhh
Q 036793          155 EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH  234 (338)
Q Consensus       155 ~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  234 (338)
                      +.+++.+|.||+-||-+|+. +|++|||.+|++|...|    +|....++++..+.+..++..        +++    ++
T Consensus       486 ~ieAt~LlAGI~vDTKnFt~-rTgsRTFdAAsyLRs~G----aDtiliq~~lk~d~e~y~k~~--------elI----~~  548 (655)
T COG3887         486 PIEATALLAGIIVDTKNFTL-RTGSRTFDAASYLRSRG----ADTILIQKFLKTDFEEYIKRS--------ELI----EN  548 (655)
T ss_pred             HHHHHHHHhceEEeccccee-ecccceehHHHHHHhcC----CcHHHHHHHHHhhHHHHHHHH--------HHH----HH
Confidence            68889999999999999987 47799999999999999    565677889888887644322        232    22


Q ss_pred             hhhheeccccccceEEEecc--ch-HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHH
Q 036793          235 SYEIVLGGEAFGHCLAVDAD--AV-AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIA  311 (338)
Q Consensus       235 ~~~~~~~~~~~~~~~~v~~~--~~-~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA  311 (338)
                      +...  ++   |+..+.-.+  -. ..+.+..++.+.      +|.|+.+. |+..+. .++.+.+|.||.+++||+.||
T Consensus       549 ~~~~--~~---giaiA~~~~~e~~~~viiaqAAD~lL------sm~Gv~AS-FVvak~-~~~~i~ISaRS~g~iNVQ~Im  615 (655)
T COG3887         549 ARVY--KD---GIAIATGSKDEAYSNVIIAQAADTLL------SMAGVEAS-FVVAKR-TDGLISISARSLGKINVQVIM  615 (655)
T ss_pred             HHcc--cC---CeEEEecchhhhhhHHHHHHHHHHHh------hhcCceEE-EEEEEc-cCCeEEEEecccCCchHHHHH
Confidence            2221  11   122232111  01 234555566554      68889975 333344 578899999999999999999


Q ss_pred             hHcCCCccccccccccchhhhcc
Q 036793          312 QEFGGGGHRNASSFMLSSAEFER  334 (338)
Q Consensus       312 ~~fGGGGH~~AAG~~~~~~~~~~  334 (338)
                      +++|||||.+.|+++++...+++
T Consensus       616 EaLGGGGH~tnAAtql~~~t~~e  638 (655)
T COG3887         616 EALGGGGHLTNAATQLKDVTLEE  638 (655)
T ss_pred             HHhcCcchhhHHHHhhccccHHH
Confidence            99999999999999998766543

>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]

Probab=99.91  E-value=8e-24  Score=190.91  Aligned_cols=273  Identities=21%  Similarity=0.204  Sum_probs=145.3

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCCCC----CCCC-CCCCeEEEEeCCCChH---H----HHHH
Q 036793           30 AVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPN----NLPL-HEIDDLYLLDYVGPSG---F----VQQV   97 (338)
Q Consensus        30 iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~~~----~~~~-~~~~~viivD~~~~~~---~----~~~l   97 (338)
                      ++++.|+|+||++||+++++++++...+..+.+.   .+..++    .... ...+.+.|.|+.....   .    +++.
T Consensus         2 y~i~sH~DlDG~acaaV~k~~~gk~vyn~n~~~~---~~~~i~~~l~~~~~~~~~~~i~i~DL~~n~d~~e~~~~~l~~~   78 (339)
T COG2404           2 YHIYSHNDLDGYACAAVVKRFFGKNVYNANFGRE---VSARINSILESAEESGIGDAILISDLDVNLDRFEELVEKLKEA   78 (339)
T ss_pred             EEEEecCCcchHHHHHHHHHHhhhcccchhhhcc---chHHHHHHHHHHHhhcccceEEEeecccCcchhHHHHHHHHHH
Confidence            5788899999999999999998652111111110   000111    1111 2235788888877652   2    2333


Q ss_pred             hhCCCcEEEEcCCCCCCCC--CCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccccccc
Q 036793           98 SSKVSKVVILDHHKTALEA--PIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWR  175 (338)
Q Consensus        98 ~~~~~~viviDHH~~~~~~--~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~  175 (338)
                      ..++..+.|||||+|+.+.  ......+.+++|..+|+|.++|+||.+..+.      +|......|+.+++++|.|.|.
T Consensus        79 ~~~~~kv~wiDHH~t~~e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~~~~~------ep~~~~~~lve~v~s~DiW~~e  152 (339)
T COG2404          79 TNKGTKVKWIDHHKTANETKEEVREAGVSVYVDDSRCAAGVVYEYLKPHEIL------EPTLFLEQLVELVRSVDIWLWE  152 (339)
T ss_pred             hhcCCceEEeccccccchhHHHhhhcCcEEEECCcchhhhhhhheecccccC------CchhhHHHHHHHhcccchhhcc
Confidence            3457799999999999853  1123345567788889999999999985321      1333567789999999999999


Q ss_pred             ccchHHHHhhhhcccccccccC------CHHHHHHHHc----cC-HHH-HHH-hhhHHHHHHHHHHHHHHhhhhhheecc
Q 036793          176 LENSKAFSSGLKDLNIEFSFQL------NPCLFEQLLS----LD-LES-VIS-QGIVSLSHKQRLIEETLAHSYEIVLGG  242 (338)
Q Consensus       176 ~~~~~~~~~a~~l~~~g~~~~~------~~~~~~~l~~----~~-~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  242 (338)
                      .+..+-+...+.|.+.-++...      +.+-+.+++.    .. .++ +-. +.....+.....+....++...+.++.
T Consensus       153 ~~~~~~~~~~~~l~r~~~d~~~~~~~l~~~e~~~~~l~k~~~gi~~de~~~~~l~~~~~~~~~~~l~~~~kr~~~~~i~~  232 (339)
T COG2404         153 DYGLGMIPQGSELNRFMFDDNQWEYLLGDGEEYKDYLKKFNAGILWDEVLDYILQIAVGRDKIETLSNASKRVVTITIDD  232 (339)
T ss_pred             CcccccccchhhHHHHhhcchHHHHhhcchHHHHHHHHHhhcCcccHHHHHHHHHHHhhcchhHHHHHHHHhHhhhcccc
Confidence            8873333333333332221110      1111111111    00 011 000 011111222345555555555545544


Q ss_pred             ccccceEEE-eccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCH----HHHHh-HcCC
Q 036793          243 EAFGHCLAV-DADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDT----TAIAQ-EFGG  316 (338)
Q Consensus       243 ~~~~~~~~v-~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv----~~IA~-~fGG  316 (338)
                      .  ...+.+ ...+-....+..+..+...       +..++.+.+    .++  .+|.||+..+|+    +++++ +|||
T Consensus       233 ~--~~~~~i~y~~~~g~~s~~~g~~~~~~-------~d~vv~~~~----~d~--~~~~~sk~~~n~~~~~a~~~~~~~gG  297 (339)
T COG2404         233 K--KHVVEIYYRGPGGYDSSIMGQTDELY-------NDFVVFVLR----SDS--GISDRSKNNANVNIDVAEIAQVQYGG  297 (339)
T ss_pred             c--eeeEEEEecCCCCcchhhccchhhhh-------cceeEEecc----CCC--cccccccccCccchhHHHHHHhhcCC
Confidence            2  212222 1111001223333321111       122222222    344  689999864455    99998 8999


Q ss_pred             Cccccccccc
Q 036793          317 GGHRNASSFM  326 (338)
Q Consensus       317 GGH~~AAG~~  326 (338)
                      ||||+|||+.
T Consensus       298 GGH~nAaG~~  307 (339)
T COG2404         298 GGHPNAAGGK  307 (339)
T ss_pred             CCCccccccH
Confidence            9999999944

>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.87  E-value=8.3e-21  Score=176.21  Aligned_cols=169  Identities=17%  Similarity=0.084  Sum_probs=118.2

Q ss_pred             CcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCC-----C---CC--CCCC-CCCCC-eEEEEeCCCChHHH
Q 036793           28 KPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVYNP-----I---SP--NNLP-LHEID-DLYLLDYVGPSGFV   94 (338)
Q Consensus        28 ~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~-----~---~~--~~~~-~~~~~-~viivD~~~~~~~~   94 (338)
                      .+++++|. ||+|++|||+++++++++.|+++.++......+     +   .+  .++. ....+ .+|+||++...+..
T Consensus         3 ~i~V~gH~nPD~DaigSalala~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~   82 (308)
T PRK05427          3 KILVFGHKNPDTDSICSAIAYAYLKKALGLDAEAVRLGEPNPETAFVLDYFGVEAPELITSVAGEVQVILVDHNEFQQSP   82 (308)
T ss_pred             cEEEEeCCCCCHHHHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCChhHHhhcccCCeEEEEeCCCcccCc
Confidence            45667776 799999999999999999888766432221110     0   01  1111 11234 89999999887543


Q ss_pred             HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793           95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW  174 (338)
Q Consensus        95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~  174 (338)
                      ..+ .....+++||||+.+...  ....+.++++...|||+|+|+++++.+++++     +..|..+|+||++||++|++
T Consensus        83 ~~~-~~~~~~~iIDHH~~~~~~--~~~p~~~~~~~~gSt~tiv~~~~~~~~~~i~-----~~iA~~L~~gIltDT~~F~~  154 (308)
T PRK05427         83 DDI-DEATVVGVVDHHRLGNFE--TSNPLYYRIEPVGCTATILYKMFKENGVEIP-----KEIAGLMLSAILSDTLLFKS  154 (308)
T ss_pred             chh-cccCEEEEECCCcCCCCC--CCCceEEEEeeeccHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHHhcccCC
Confidence            332 234467999999985321  1112334555567999999999999988775     44557788999999999999


Q ss_pred             cccchHHHHhhhhccc-ccccccCCHH-HHHHHHcc
Q 036793          175 RLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSL  208 (338)
Q Consensus       175 ~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~  208 (338)
                      +++++++++++.+|.+ .|+    |+. +++++++.
T Consensus       155 ~~tt~~d~~~a~~L~~~~g~----d~~~~~~~l~~~  186 (308)
T PRK05427        155 PTTTEQDKAAAEELAEIAGV----DIEAYGLEMLKA  186 (308)
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHHh
Confidence            9999999999999995 884    554 66777663

>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ

Probab=99.86  E-value=7.9e-20  Score=181.87  Aligned_cols=309  Identities=17%  Similarity=0.143  Sum_probs=161.7

Q ss_pred             HHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCCCC--CCC---CCCCCCCCCC
Q 036793            7 AMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTVYN--PIS---PNNLPLHEID   80 (338)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~~--~~~---~~~~~~~~~~   80 (338)
                      +++++|.+++        .+...|+|++|.|+||++|+++|+.++++.|+++.+ +|.....  .+.   ++++...+.+
T Consensus        42 ~a~~~i~~~i--------~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~  113 (539)
T TIGR00644        42 KAVERIIEAI--------ENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVS  113 (539)
T ss_pred             HHHHHHHHHH--------hcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCC
Confidence            3455565555        346678888888999999999999999999987654 4543211  111   1122223568


Q ss_pred             eEEEEeCCCChH-HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCC---------CcHHHHHHHHHHhcccCCcc
Q 036793           81 DLYLLDYVGPSG-FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDME---------RSGATIAYDYFKNKFLDNGL  150 (338)
Q Consensus        81 ~viivD~~~~~~-~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~---------~s~a~lv~~~l~~~~~~~~~  150 (338)
                      ++|+||++..+. ..+.+.+.+..+++||||.+++..   +....++.+..         -|+|.++|.+++........
T Consensus       114 LiI~vD~G~~~~~~~~~~~~~g~~vIviDHH~~~~~~---~~~~~~vnP~~~~~~~p~~~l~gagva~~l~~al~~~~~~  190 (539)
T TIGR00644       114 LIITVDNGISAHEEIDYAKELGIDVIVTDHHEPPEDL---PEAAAIVNPNRPDCDYPNKELAGAGVAFKLCTALDEELPK  190 (539)
T ss_pred             EEEEeCCCcccHHHHHHHHhcCCCEEEECCCCCCCCC---CCccEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHHhcc
Confidence            999999999983 334445567789999999987743   22223333221         27788999988865432211


Q ss_pred             ccchhhHHHHH-HHHHhhcccccc-------------cc---ccchHHHHhhhhccc-------ccccc---------cC
Q 036793          151 QLHREFERLSL-LFDYIEDGDLWR-------------WR---LENSKAFSSGLKDLN-------IEFSF---------QL  197 (338)
Q Consensus       151 ~~a~~~~~~~~-l~gi~~Dtd~~~-------------~~---~~~~~~~~~a~~l~~-------~g~~~---------~~  197 (338)
                      +.....+.+.+ .+|.+.|---..             ..   ++.-+.+...+.+-.       .+|.+         ..
T Consensus       191 ~~~~~~~~ldl~aigtiaD~~~l~g~NR~iv~~Gl~~l~~~~~~gl~~Ll~~~~~~~~~i~~~~i~f~iaP~iNA~GR~~  270 (539)
T TIGR00644       191 LKPDLLDLLDLVAIGTIADVMPLTGENRALVKKGLKALRKGKRPGLKALLKVAGFNGKPLSSTDIGFSIGPRINAAGRLG  270 (539)
T ss_pred             cchhHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCCcHHHeeeeeecccccccccC
Confidence            00000111111 134443322111             11   111111111110000       01111         13


Q ss_pred             CHHHHHHHH-ccCHHH---HHHhhhHHHHHHHHHHHHHHhhhhhheec-cccccceEEEeccc-hHHHHHHHHHHHhhhc
Q 036793          198 NPCLFEQLL-SLDLES---VISQGIVSLSHKQRLIEETLAHSYEIVLG-GEAFGHCLAVDADA-VAELRSELGHQLATKS  271 (338)
Q Consensus       198 ~~~~~~~l~-~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~s~~~~~l~~~~  271 (338)
                      ++.+.-+++ ..+..+   +.+.-..+.+.++++...+.+.+....-. ......+..+..+. -+.+.+.++..+++.+
T Consensus       271 ~~~~a~~ll~~~d~~~a~~~a~~l~~~N~~Rk~l~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~Gv~GivA~rl~~~~  350 (539)
T TIGR00644       271 DASLAVELLLTDDPKQARQLAEELDELNEERKKIEQEVLAEAEKIAEANLLPNDSVIVVAGENWHPGVLGIVASRLAETF  350 (539)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEEeCCCCCchHHHHHHHHHHHH
Confidence            344333343 333332   22223334445555544444332211000 00000112222222 2335666777777654


Q ss_pred             ccCCcceeEEEEEEeeeecCCCe-EEEEEecCCCCCHHHHHhH----c--CCCccccccccccchhhhcccc
Q 036793          272 HDLNLRGIGAVVYRVPELQNDQL-VKISLRSVDSEDTTAIAQE----F--GGGGHRNASSFMLSSAEFERWK  336 (338)
Q Consensus       272 ~~~~i~~v~~~v~~~~e~~~~~~-~kvSlRS~~~idv~~IA~~----f--GGGGH~~AAG~~~~~~~~~~~~  336 (338)
                      ..    ++  +++..    .++. +|+|+||.+++|+.++.+.    +  .||||+.|||++++...+++|+
T Consensus       351 ~k----P~--ivls~----~~~~~~kgS~Rs~~g~nl~~~l~~~~~~~l~~~GGH~~AaG~~i~~~~~~~f~  412 (539)
T TIGR00644       351 NK----PV--IVLAI----DEGKGAKGSARSISGIDLYDLLSELREALFLKFGGHAMAAGLTLKRENLEEFR  412 (539)
T ss_pred             CC----CE--EEEEE----cCCceEEEeeccCCCCcHHHHHHHHHHhhccccCChHHcCeeEEcHHHHHHHH
Confidence            32    23  23333    2344 8999999988999887654    2  4999999999999988888775

All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.

>PRK11070 ssDNA exonuclease RecJ; Provisional

Probab=99.76  E-value=2e-16  Score=157.03  Aligned_cols=308  Identities=16%  Similarity=0.113  Sum_probs=167.2

Q ss_pred             HHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCC-Ce-EEeeCCC--CCCCC---CCCCCCCC
Q 036793            6 HAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSV-PA-LFFPNTV--YNPIS---PNNLPLHE   78 (338)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~-~v-~~~p~~~--~~~~~---~~~~~~~~   78 (338)
                      ..++++|.+++        .++..|+|+.|.|.||++|++.++.+++++|. .+ .++|...  +..+.   ++++...+
T Consensus        56 ~~a~~ri~~ai--------~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~  127 (575)
T PRK11070         56 EKAVELLYNAL--------REGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARG  127 (575)
T ss_pred             HHHHHHHHHHH--------HCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcC
Confidence            45667777777        45789999999999999999999999999987 44 4578652  22222   22333345


Q ss_pred             CCeEEEEeCCCCh-HHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCccccc--------CC-CCcHHHHHHHHHHhcccC-
Q 036793           79 IDDLYLLDYVGPS-GFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTI--------DM-ERSGATIAYDYFKNKFLD-  147 (338)
Q Consensus        79 ~~~viivD~~~~~-~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~--------d~-~~s~a~lv~~~l~~~~~~-  147 (338)
                      .+++|+||++..+ ..++.+.+.+..+||+|||......   +....++.        +. .-|++.++|.+++...-. 
T Consensus       128 ~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~~~---P~a~a~iNP~~~~~~yp~~~L~g~Gvaf~l~~al~~~l  204 (575)
T PRK11070        128 AQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLPGETL---PAADAIINPNLRDCNFPSKSLAGVGVAFYLMLALRAFL  204 (575)
T ss_pred             CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCCCC---CCCeEEECCCCcCCCCCCCcchHHHHHHHHHHHHHHHh
Confidence            6899999999998 5566667778899999999876643   11111111        11 128888888766543100 


Q ss_pred             ----------Cc-cccchhhHHHHHH-HHHhhcc-------------cccccc----ccchHHHHhhhhcc-------cc
Q 036793          148 ----------NG-LQLHREFERLSLL-FDYIEDG-------------DLWRWR----LENSKAFSSGLKDL-------NI  191 (338)
Q Consensus       148 ----------~~-~~~a~~~~~~~~l-~gi~~Dt-------------d~~~~~----~~~~~~~~~a~~l~-------~~  191 (338)
                                .+ ..+   .+.+.+. +|.+.|-             |.-...    +++-+.+...+.+-       ..
T Consensus       205 ~~~~~~~~~~~~~~~l---~~~LdLvAlgTIADvvpL~~eNR~lVk~GL~~l~~~~~~~Gl~aL~~~~~~~~~~i~~~~i  281 (575)
T PRK11070        205 RDQGWFDERGIAIPNL---AELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRPGIKALLEVANRDAQKLAASDL  281 (575)
T ss_pred             hhccccccccCCcccH---HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHccCCCHHHHHHHHHhCCCCCCCchhhe
Confidence                      00 000   0111111 2222221             111111    11112221111110       01


Q ss_pred             cccc---------cCCHHHHHH-HHccCHHH---HHHhhhHHHHHHHHHHHHHHhhhhhhe----eccccccceEEEecc
Q 036793          192 EFSF---------QLNPCLFEQ-LLSLDLES---VISQGIVSLSHKQRLIEETLAHSYEIV----LGGEAFGHCLAVDAD  254 (338)
Q Consensus       192 g~~~---------~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~v~~~  254 (338)
                      +|..         -.++...-+ |+..+..+   +.+.-..+++.++++-..+++.+....    ...........+..+
T Consensus       282 ~F~iaPriNAaGRl~~a~~av~lLl~~d~~~a~~la~~l~~~N~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~~ivv~~~  361 (575)
T PRK11070        282 GFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSSDTLPYGLAMYHP  361 (575)
T ss_pred             eEEeeccccccccccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcEEEEEeC
Confidence            1111         033333233 33444432   333344455555555444443332110    000001112333333


Q ss_pred             c-hHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhH--------c-CCCccccccc
Q 036793          255 A-VAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQE--------F-GGGGHRNASS  324 (338)
Q Consensus       255 ~-~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~--------f-GGGGH~~AAG  324 (338)
                      + -+.+...++..+++++...    +  +|+.. +  .++..|.|.||.+++|+.+..+.        | ..|||+.|||
T Consensus       362 ~wh~GViGIVAsrl~e~y~rP----~--ivls~-~--~~g~~kGS~RSi~g~~l~~aL~~~~~~~~~ll~~fGGH~~AaG  432 (575)
T PRK11070        362 EWHQGVVGILASRIKERFHRP----V--IAFAP-A--GDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAG  432 (575)
T ss_pred             CCCccHHHHHHHHHHHHHCCC----E--EEEEE-c--CCCeEEEEEeCCCCCcHHHHHHHhhhcccchhhccCChHHhCc
Confidence            2 2346677777777765432    2  23332 1  24789999999988998765431        2 5899999999


Q ss_pred             cccchhhhcccc
Q 036793          325 FMLSSAEFERWK  336 (338)
Q Consensus       325 ~~~~~~~~~~~~  336 (338)
                      ++++.+.++.|+
T Consensus       433 ~ti~~e~l~~f~  444 (575)
T PRK11070        433 LSLEEDKFELFQ  444 (575)
T ss_pred             ceeCHHHHHHHH
Confidence            999988888775

>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []

Probab=99.62  E-value=6.4e-16  Score=127.83  Aligned_cols=134  Identities=20%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCC--CCCeEEEEeCCCChHHHHHHhh-C
Q 036793           27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLH--EIDDLYLLDYVGPSGFVQQVSS-K  100 (338)
Q Consensus        27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~--~~~~viivD~~~~~~~~~~l~~-~  100 (338)
                      .++++++|. ||+||++||+++++++++.++....++........  .......  ..+.+|+||++.+++....... .
T Consensus         6 ~~i~i~~H~~~D~Dgl~Sa~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vD~~~~~~~~~~~~~~~   85 (145)
T PF01368_consen    6 ERILIVGHINPDADGLGSAIALAKILKRLGKEVTVIPIPEGPPHEYFLFVLKYFEMNEDLIILVDCGSPDRDGEKLEELK   85 (145)
T ss_dssp             SEEEEEEBSS-SHHHHHHHHHHHHHHHHTTCTEEEEEECSSTCGHHHHHHHHHTTHHHSEEEEES-SSGGGSGTTGGGTS
T ss_pred             CEEEEEccCCCCchHHHHHHHHHHHHHHcCCCceEEecCCCCcchhhhhhhhhhcccceEEEEecCCccccchHHHHhcC
Confidence            445555555 59999999999999999998865554432111110  0000001  1279999999888754333322 3


Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHh
Q 036793          101 VSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYI  166 (338)
Q Consensus       101 ~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~  166 (338)
                      ..++++||||++..... .+.....+.....|+|+++++++++.+.+++     ++.+..+++||+
T Consensus        86 ~~~viiiDHH~~~~~~~-~~~~~~~~~~~~~s~~~lv~~~~~~~~~~~~-----~~~a~ll~~Giv  145 (145)
T PF01368_consen   86 GIKVIIIDHHQPGEEDI-NPNDVNYIDESAGSTSTLVAEMLKELGIKID-----KEIATLLLAGIV  145 (145)
T ss_dssp             CSEEEEEESSSSBSS----SSCEEEEETSSSHHHHHHHHHHHHTTCCHH-----HHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCcccC-CCCCCCCEeCcHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHhhhC
Confidence            46889999998776420 1334444555556888899999999887663     455566778885

The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....

>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]

Probab=99.56  E-value=7e-13  Score=131.03  Aligned_cols=102  Identities=21%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCCCCCCC-CCCCCCCCCCeEE
Q 036793            6 HAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTVYNPIS-PNNLPLHEIDDLY   83 (338)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~~~~~-~~~~~~~~~~~vi   83 (338)
                      ..+++++..++        .+...|.|++|.|.||++|++.++.+++.+|.++.+ +|........ ++.+..+..+++|
T Consensus        23 ~~a~~~i~~ai--------~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liI   94 (491)
T COG0608          23 EKAAARIAEAI--------EKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLII   94 (491)
T ss_pred             HHHHHHHHHHH--------HcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEE
Confidence            34555666665        457889999999999999999999999999987655 5554222110 1223445678999


Q ss_pred             EEeCCCCh-HHHHHHhhCCCcEEEEcCCCCCCC
Q 036793           84 LLDYVGPS-GFVQQVSSKVSKVVILDHHKTALE  115 (338)
Q Consensus        84 ivD~~~~~-~~~~~l~~~~~~viviDHH~~~~~  115 (338)
                      +||+++.. .......+.+..+||+|||+..+.
T Consensus        95 tvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~  127 (491)
T COG0608          95 TVDNGSGSLEEIARAKELGIDVIVTDHHPPGEE  127 (491)
T ss_pred             EECCCcccHHHHHHHHhCCCcEEEECCCCCCCC
Confidence            99999998 445555556779999999955543

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.25  E-value=7.3e-11  Score=118.41  Aligned_cols=219  Identities=15%  Similarity=0.127  Sum_probs=125.0

Q ss_pred             CeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHH
Q 036793           80 DDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERL  159 (338)
Q Consensus        80 ~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~  159 (338)
                      ..+++||.....+....+ .....+.+||||+......  ...+.++.....|+|+++++++++.++.++     +..+.
T Consensus       305 ~~~iLVD~~e~~q~~~~~-~~~~i~~iiDHH~~~~~~~--~~pi~~~~~~~gst~tiv~~~~~~~~i~~~-----~~ia~  376 (546)
T PRK14869        305 KKVILVDHNEKSQAVEGI-EEAEILEIIDHHRLGDIQT--SNPIFFRNEPVGSTSTIVARMYRENGIEPS-----PEIAG  376 (546)
T ss_pred             CceEEEcCccccccccch-hhceEEEEecCCccCCCCC--CCCcEEEeeeeeeHHHHHHHHHHHcCCCCC-----HHHHH
Confidence            456778877655332222 1233467899999765321  122334444457999999999999988875     45556


Q ss_pred             HHHHHHhhccccccccccchHHHHhhhhccc-ccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 036793          160 SLLFDYIEDGDLWRWRLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYE  237 (338)
Q Consensus       160 ~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  237 (338)
                      .+|+||++||+.|+|++++++++.++++|.+ .|+    ++. +.+++++....-          .+..+...+++....
T Consensus       377 ~ll~gIlsDT~~f~~~~tt~~d~~~a~~L~~~~g~----~~~~~~~~l~~~~~~~----------~~~~~~~~l~~d~K~  442 (546)
T PRK14869        377 LLLAAILSDTLLFKSPTTTELDREAAEWLAEIAGI----DPEEFAKEMFKAGSSL----------EGKTPEEIFNRDFKE  442 (546)
T ss_pred             HHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCCc----------CCCCHHHHHHhcCee
Confidence            7889999999999999999999999999998 684    555 555566533210          011222223333333


Q ss_pred             heeccccccceEEEeccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHH
Q 036793          238 IVLGGEAFGHCLAVDADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAI  310 (338)
Q Consensus       238 ~~~~~~~~~~~~~v~~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~I  310 (338)
                      ..+++..+++... .....       +.+...+....       ..+++.+++++...-.+++  ..-+-+-+  +-..+
T Consensus       443 ~~~~~~~v~i~~v-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~ll~tdi~~~~--s~~~~~~~--~~~~~  510 (546)
T PRK14869        443 FTIGGVKFGVGQV-ETMDFEEFFELKEELLEALEKLR-------EEEGYDLLLLMVTDIIEEG--SELLVAGD--EKEIV  510 (546)
T ss_pred             eeeCCEEEEEEEE-EecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEEeccCCCC--eEEEEECC--cHHHH
Confidence            4455555654332 22222       22222222222       2345555444431111222  22333332  22336


Q ss_pred             HhHcC---CCccccccccccchhhh
Q 036793          311 AQEFG---GGGHRNASSFMLSSAEF  332 (338)
Q Consensus       311 A~~fG---GGGH~~AAG~~~~~~~~  332 (338)
                      .+.||   ++|+....|...++.++
T Consensus       511 ~~~~~~~~~~~~~~~~~~~srkkq~  535 (546)
T PRK14869        511 ARAFGVPLEDNSFYLPGVVSRKKQV  535 (546)
T ss_pred             HHHhCCcCcCCeEECCCCcccchhh
Confidence            67787   57888888888766554

>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]

Probab=98.93  E-value=6.9e-09  Score=94.13  Aligned_cols=152  Identities=16%  Similarity=0.107  Sum_probs=94.8

Q ss_pred             cEEEecC-CCchHHHHHHHHHHHHhcCCC---CeEEeeCCC--CCC-CC--CCCCC----C-CCCCeEEEEeCCCChHHH
Q 036793           29 PAVLYHY-PCPDGAFAALAAHLYFSSSSV---PALFFPNTV--YNP-IS--PNNLP----L-HEIDDLYLLDYVGPSGFV   94 (338)
Q Consensus        29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~---~v~~~p~~~--~~~-~~--~~~~~----~-~~~~~viivD~~~~~~~~   94 (338)
                      .++..|. ||.|.++||++.+++....+.   +...+|...  +.. ++  -.+.|    . .....+|+||.+..++..
T Consensus         4 ~~v~Gh~npDtDsi~Sai~~ay~~~~~~~~~~~~~~l~~~~~et~fvl~~f~~~~p~l~~~~~~~~~viLVDhNe~~qs~   83 (311)
T COG1227           4 ILVVGHENPDTDSIASAIVYAYLLNAYGEFEAKAVRLGEPNLETAFVLDYFGVEAPKLVESVKGEKKVILVDHNEFQQSV   83 (311)
T ss_pred             EEEecCCCccHHHHHHHHHHHHHHHHhhhccCCceecCCCChhHHHHHHHhccCCchhhhcccCCCcEEEEeccccccCc
Confidence            4556665 799999999998888775441   222222211  000 00  00111    1 112589999998777544


Q ss_pred             HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793           95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW  174 (338)
Q Consensus        95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~  174 (338)
                      ..+.+ ..-+-+||||.-..-.  -.....++..+-.|++++++.++.+.++.++..+     |--++.+|+.||..|+-
T Consensus        84 ~~~~d-~~I~~IIDHHr~~~~~--t~~p~~~~~epVGctsTIv~~~~~e~~~~~~~~i-----A~LlLsaIlsDTl~fks  155 (311)
T COG1227          84 DDIED-AEILGIIDHHRLADFE--TAAPLYIRNEPVGCTSTIVYRLFKEDGIEIEKEI-----AGLLLSAILSDTLLFKS  155 (311)
T ss_pred             ccccc-ceEEEEeeeeeecCcc--cCCCcEEEecCCchHHHHHHHHHHHhcCccchhH-----HHHHHHHHhhhhhcccC
Confidence            44322 3356899999987643  1222333444456888999999999998885333     33456899999999988


Q ss_pred             cccchHHHHhhhhc
Q 036793          175 RLENSKAFSSGLKD  188 (338)
Q Consensus       175 ~~~~~~~~~~a~~l  188 (338)
                      +.++.++-.++-.|
T Consensus       156 pTtt~~D~~~a~~L  169 (311)
T COG1227         156 PTTTDTDVDIAKEL  169 (311)
T ss_pred             CCcchhHHHHHHHH
Confidence            77777776555554

>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain

Probab=98.60  E-value=2.5e-08  Score=71.34  Aligned_cols=46  Identities=33%  Similarity=0.512  Sum_probs=38.6

Q ss_pred             CCCeEEEEEecCCCCCHH-HHHhHc------CCCccccccccccchhh-hcccc
Q 036793          291 NDQLVKISLRSVDSEDTT-AIAQEF------GGGGHRNASSFMLSSAE-FERWK  336 (338)
Q Consensus       291 ~~~~~kvSlRS~~~idv~-~IA~~f------GGGGH~~AAG~~~~~~~-~~~~~  336 (338)
                      .++++++|+||...++.. ++++.+      +||||+.|||++++... +++|+
T Consensus        10 ~~~~~~~s~rs~~~~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~   63 (68)
T PF02272_consen   10 EDGKIKVSARSSKGVDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFL   63 (68)
T ss_dssp             ESSTEEEEEEESSSSTHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHH
T ss_pred             cCCEEEEEEEECCchhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHH
Confidence            478999999998778888 776665      59999999999998776 77775

DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.55  E-value=5.4e-06  Score=80.40  Aligned_cols=96  Identities=22%  Similarity=0.294  Sum_probs=62.7

Q ss_pred             HHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcC----CCC--eE--E---eeCCCCCCC-CCC----C
Q 036793           10 AAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSS----SVP--AL--F---FPNTVYNPI-SPN----N   73 (338)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~----~~~--v~--~---~p~~~~~~~-~~~----~   73 (338)
                      ..|.+|.        -..++|++=||.|.||+++++++.+.+..+    +..  ..  +   .|..  .|+ .++    +
T Consensus       334 k~irrAV--------~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPsk--APfYeleDvtrD  403 (715)
T COG1107         334 KEIRRAV--------LEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSK--APFYELEDVTRD  403 (715)
T ss_pred             HHHHHHH--------hcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCccc--CCceeHHhhhhh
Confidence            3466666        257889999999999999999988776442    221  11  1   1211  111 122    1


Q ss_pred             CC---------CCCCCeEEEEeCCCChH---HHHHHhhCCCcEEEEcCCCCCCC
Q 036793           74 LP---------LHEIDDLYLLDYVGPSG---FVQQVSSKVSKVVILDHHKTALE  115 (338)
Q Consensus        74 ~~---------~~~~~~viivD~~~~~~---~~~~l~~~~~~viviDHH~~~~~  115 (338)
                      +.         ..+.-++++||.+++.+   .+.++...+..+++||||-..+.
T Consensus       404 l~~aLED~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~  457 (715)
T COG1107         404 LNFALEDAHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEA  457 (715)
T ss_pred             HHHHHHHHHhcCCccceEEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcch
Confidence            11         12346899999999973   45666667789999999988774

>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]

Probab=97.73  E-value=0.00043  Score=63.62  Aligned_cols=148  Identities=17%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             cEEEecCC-CchHHHHHHHHHHHHhcC-CCCeEEeeC-----CCCCCCC-------------------CCCCCCC----C
Q 036793           29 PAVLYHYP-CPDGAFAALAAHLYFSSS-SVPALFFPN-----TVYNPIS-------------------PNNLPLH----E   78 (338)
Q Consensus        29 ~iii~h~~-D~DgigSa~~l~~~~~~~-~~~v~~~p~-----~~~~~~~-------------------~~~~~~~----~   78 (338)
                      .+++.... |+|.+.||+.+++++.+. .+.+.++|-     ..+ +++                   .+|++..    .
T Consensus        23 hiv~GNEScDLDS~iSaltyAy~l~~~~~~e~~~vPilnIpR~el-~lr~ei~~vl~kl~Ise~~l~FrdDI~~~~~~~~  101 (377)
T KOG4129|consen   23 HIVMGNESCDLDSFISALTYAYCLDKVHRKEVFMVPILNIPRFEL-NLRTEIFYVLEKLHISESALIFRDDIELLELNIS  101 (377)
T ss_pred             EEEeCCccccHHHHHHHHHHHHHHHHhccCCceEEEEeccccccC-CcchhHHHHHHHcCCChHHeeehhhhhccccccc
Confidence            45555554 999999999998888776 445555552     111 110                   1233211    1


Q ss_pred             CC-eEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCC-ccccchhh
Q 036793           79 ID-DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDN-GLQLHREF  156 (338)
Q Consensus        79 ~~-~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~-~~~~a~~~  156 (338)
                      .. .++.||.+.+...- .......-..+||||+.....   +..-..+++...|||+||.+|+.+..-+. +.+.   +
T Consensus       102 g~l~~~LVDhn~l~~~d-~~~e~~~i~~IiDhhp~e~~~---~~a~~~~Ie~~gScsTLV~~y~l~~~~~~~~~~~---n  174 (377)
T KOG4129|consen  102 GKLKLYLVDHNVLPSKD-LVNEIAVIEGIIDHHPDEDKH---LPACPRIIELSGSCSTLVSRYILEELQELNTRQA---N  174 (377)
T ss_pred             CCceEEEecCCCCcccc-ccccccceeeeeccCcccccC---CCccceeEEeecchHHHHHHHHHhhcchhhhHHH---H
Confidence            12 58999988776210 111123345789999987643   11112345556799999999987643221 1100   0


Q ss_pred             HHHHHHHHHhhccccccccccchHHHHh
Q 036793          157 ERLSLLFDYIEDGDLWRWRLENSKAFSS  184 (338)
Q Consensus       157 ~~~~~l~gi~~Dtd~~~~~~~~~~~~~~  184 (338)
                      -|.-++..|+-||++++-..+++.+-..
T Consensus       175 ~A~LL~g~ILiDt~nm~~ek~s~kd~~~  202 (377)
T KOG4129|consen  175 LARLLLGPILIDTGNMRKEKTSPKDVEI  202 (377)
T ss_pred             HHHHhhcceEEeccccccccCChhHHHH
Confidence            1212347899999999987777755443

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46

Probab=93.37  E-value=0.11  Score=53.02  Aligned_cols=82  Identities=12%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCCCCCeEEEEeCCCChHHHHHHhh--CCCcEE
Q 036793           30 AVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLHEIDDLYLLDYVGPSGFVQQVSS--KVSKVV  105 (338)
Q Consensus        30 iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~~~~~viivD~~~~~~~~~~l~~--~~~~vi  105 (338)
                      |++...+|.|+++|+-.|..+|+.-.....++|-..|..+.  .++. .++...+|++-|+..-... ++..  ....+.
T Consensus         2 Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~~~~~-~~~~~~vilIncGa~~dl~-~~l~~~~~~~iy   79 (622)
T PF02724_consen    2 VLILVALDVDALCACKILTSLLKSDNIQYSLVPVSGYSELERAYEEL-DEDIKSVILINCGATVDLE-EFLELDEDVTIY   79 (622)
T ss_pred             EEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHHHHHH-hhhhceEEEEecCchhhHH-HHhCCCCceEEE
Confidence            55666689999999999999999877677788865443221  1112 2345678888888765432 2322  234778


Q ss_pred             EEcCCCCC
Q 036793          106 ILDHHKTA  113 (338)
Q Consensus       106 viDHH~~~  113 (338)
                      |||.|.+-
T Consensus        80 ViDshRP~   87 (622)
T PF02724_consen   80 VIDSHRPW   87 (622)
T ss_pred             EEeCCCCc
Confidence            88888764

Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=89.89  E-value=0.37  Score=48.63  Aligned_cols=32  Identities=22%  Similarity=0.075  Sum_probs=26.3

Q ss_pred             CCcEEEecC-CCchHHHHHHHHHHHHhcCCCCe
Q 036793           27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPA   58 (338)
Q Consensus        27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v   58 (338)
                      .++++++|+ ||.|+++||++++.+.+..+++.
T Consensus         3 ~~i~v~gh~~~d~d~i~sai~ya~l~~~~~~~~   35 (546)
T PRK14869          3 KPIYVIGHKNPDTDSICSAIAYAELKNKLGEGN   35 (546)
T ss_pred             CcEEEEcCCCCChHHHHHHHHHHHHHHHcCCCc
Confidence            467788887 79999999999999888776543

>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]

Probab=80.83  E-value=3.9  Score=40.26  Aligned_cols=84  Identities=11%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             CcEEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCCCCCeEEEEeCCCChHHHHHHh-hCCCcE
Q 036793           28 KPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLHEIDDLYLLDYVGPSGFVQQVS-SKVSKV  104 (338)
Q Consensus        28 ~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~~~~~viivD~~~~~~~~~~l~-~~~~~v  104 (338)
                      ..|+++..-|.|++++.-.|..+++.-.....++|-..+..+.  .-+. .+....+|.+-|+..-....-+. .....+
T Consensus        24 ~~vlifVs~DiDALCA~kiLt~Llk~D~iqysivPVsG~~elek~~~e~-~e~~~~iiLiNcG~~vDL~~~L~~P~e~~~  102 (587)
T KOG2475|consen   24 CPVLIFVSLDIDALCATKILTHLLKCDHIQYSIVPVSGWSELEKAFLEL-QEQIKYIILINCGATVDLTRLLQPPSEDVI  102 (587)
T ss_pred             CcEEEEEecChhHHHHHHHHHHHHhccccceeEEEecchHHHHHHHHhh-ccCceEEEEecCCcchhHHHHhCCcccceE
Confidence            3466666699999999999999998765566778865333221  0011 12345666677766543221111 111136


Q ss_pred             EEEcCCCC
Q 036793          105 VILDHHKT  112 (338)
Q Consensus       105 iviDHH~~  112 (338)
                      .|+|-|.+
T Consensus       103 fViDSHRP  110 (587)
T KOG2475|consen  103 FVIDSHRP  110 (587)
T ss_pred             EEEeCCCC
Confidence            77777754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
3dev_A	320	SH1221; alpha-beta protein., structural genomics,	6e-07
3dma_A	343	Exopolyphosphatase-related protein; structural gen	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus} Length = 320

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 290 QNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLSSAE 331
                ++  +RS        +A +FGGGGH NAS   + S +
Sbjct: 259 DEGDQIRCRIRSKGI-TINDVANQFGGGGHPNASGVSVYSWD 299

>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} Length = 343

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 288 ELQNDQLVKISLRSVDSEDTTAIAQE-FGGGGHRNASSFML 327
           E    +++KISLRSV       +A E F GGGH NAS    
Sbjct: 279 EDTEKKMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEF 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 57/203 (28%)

Query: 91  SGFVQQVSSKVSKVVILDHHKTALEAPIEGENV-SKTIDMERSG-------------ATI 136
                 +S+  +  + LDHH   L  P E +++  K +D                  + I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 137 A---------YDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLK 187
           A         +D +K+   D   +L    E  SL  + +E  +  R   +    F     
Sbjct: 334 AESIRDGLATWDNWKHVNCD---KLTTIIE-SSL--NVLEPAEY-RKMFDRLSVFP---P 383

Query: 188 DLNIEFSFQLNPCLFEQLLSL---DLESVISQGIVSLSHKQRLIEETLA-HSYEIVLGGE 243
             +I       P     LLSL   D+       +V+  HK  L+E+     +  I     
Sbjct: 384 SAHI-------P---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----- 428

Query: 244 AFGHCLAVDADAVAELRSELGHQ 266
                + ++     E    L H+
Sbjct: 429 ---PSIYLELKVKLENEYAL-HR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 34/263 (12%), Positives = 80/263 (30%), Gaps = 69/263 (26%)

Query: 106 ILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFD- 164
           IL       +A ++  +     DM +S           + +D+ +           LF  
Sbjct: 21  ILSVF---EDAFVDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 165 -----------YIEDGD------LW-RWRLE------NSKAFSSGLKDL---NIEFSFQL 197
                      ++E+        L    + E       ++ +      L   N  F+ + 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KY 129

Query: 198 NPCLFEQLLSLD--LESVISQGIVSLSH------KQRLIEETL-AHSYEIVLGGEAF--- 245
           N    +  L L   L  +     V +        K  +  +   ++  +  +  + F   
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 246 -GHCLAVDADAVAELRSELGHQL-----ATKSHDLNLR-GIGAVVYRVPELQNDQLVKIS 298
             +C     + V E+  +L +Q+     +   H  N++  I ++   +  L   +  +  
Sbjct: 189 LKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 299 L---RSV-DSEDTTAIAQEFGGG 317
           L    +V +++        F   
Sbjct: 247 LLVLLNVQNAK----AWNAFNLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3dma_A	343	Exopolyphosphatase-related protein; structural gen	100.0
3dev_A	320	SH1221; alpha-beta protein., structural genomics,	100.0
2zxr_A	666	Single-stranded DNA specific exonuclease RECJ; DNA	99.93
2haw_A	309	Manganese-dependent inorganic pyrophosphatase; sub	99.92
1wpn_A	188	Manganese-dependent inorganic pyrophosphatase; met	99.92
2eb0_A	307	Manganese-dependent inorganic pyrophosphatase; DHH	99.89
1k20_A	310	Manganese-dependent inorganic pyrophosphatase; fam	99.89
2qb7_A	397	Exopolyphosphatase; A/B/A structure, DHH family ph	99.75

>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}

Probab=100.00  E-value=8.8e-41  Score=312.89  Aligned_cols=293  Identities=16%  Similarity=0.179  Sum_probs=192.7

Q ss_pred             hHHHHHHHHhhccCCccccccCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEE-eeCCC---CCCCC-CCCCC---
Q 036793            5 THAMVAAIARAIPSSSIMNMMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALF-FPNTV---YNPIS-PNNLP---   75 (338)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~---~~~~~-~~~~~---   75 (338)
                      ++..++++.+.+.       ...+++|+.|. ||+||+||+++++.++++.|+++.+ .|...   +.++. .+++.   
T Consensus         7 ~~~~~~~l~~~i~-------~~~~i~I~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~~~~~~~~fl~~~~~i~~~~   79 (343)
T 3dma_A            7 AQAHIDHFTKWFE-------RADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYD   79 (343)
T ss_dssp             CHHHHHHHHHHHH-------HCSEEEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESSCCCGGGTTSTTGGGCEETT
T ss_pred             CHHHHHHHHHHHh-------cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCCEEEECCCCCchHhhhccCcchhcccc
Confidence            4455566665552       23455566665 8999999999999999999987765 34321   11111 11111   


Q ss_pred             C---------CCCCeEEEEeCCCChHH--HH-HHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHh
Q 036793           76 L---------HEIDDLYLLDYVGPSGF--VQ-QVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKN  143 (338)
Q Consensus        76 ~---------~~~~~viivD~~~~~~~--~~-~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~  143 (338)
                      .         .+.+++|+||++.+++.  +. .+......+++||||+.++.    ++..+++.+...|||+|+|+++++
T Consensus        80 ~~~~~~~~~~~~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~~~----~~~~~~i~~~~~ST~eiv~~l~~~  155 (343)
T 3dma_A           80 RYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPED----FCRITISHPEISSTSELVFRLICR  155 (343)
T ss_dssp             TCHHHHHHHHHHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCS----CSSEEEECTTSSCHHHHHHHHHHH
T ss_pred             cChHHHhhcccCCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCCCC----CCceEEEecCcCcHHHHHHHHHHH
Confidence            0         13579999999988743  22 34445568899999999874    567777766667999999999998


Q ss_pred             cc--cCCccccchhhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHH-HHHHHHcc-CHHHHHHhhhH
Q 036793          144 KF--LDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPC-LFEQLLSL-DLESVISQGIV  219 (338)
Q Consensus       144 ~~--~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~-~~~~l~~~-~~~~~~~~~~~  219 (338)
                      .+  ++++     +..|+.+|+||++||+.|+|++|++++|++|++|++.|    +|+. +.+.++.. +.+        
T Consensus       156 ~~~~~~i~-----~~~At~L~~GI~tDTg~F~~~~Tt~~t~~aaa~L~~~G----ad~~~i~~~l~~~~s~~--------  218 (343)
T 3dma_A          156 MGYFSDIS-----KEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKG----IDKDDIYRKVYNTYSES--------  218 (343)
T ss_dssp             TTCGGGCC-----HHHHHHHHHHHHHHTTTTTSSCCCHHHHHHHHHHHTTT----CCHHHHHHHHHSCCCHH--------
T ss_pred             cCCCCCCC-----HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHhccCCHH--------
Confidence            87  6664     56778899999999999999999999999999999999    5666 44556665 433        


Q ss_pred             HHHHHHHHHHHHHhhhhhheeccccccceEEEeccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEE
Q 036793          220 SLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISL  299 (338)
Q Consensus       220 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSl  299 (338)
                          +.++...++++....  .++.+.+. .+..+..+.+....+..-...+..+.++++.+++++. |...++++++|+
T Consensus       219 ----~~~l~~~~l~~~~~~--~~~~~a~~-~~~~~~~~~~~~~~~d~~~~v~~ll~i~gv~~~~~~~-e~~~~~~i~vs~  290 (343)
T 3dma_A          219 ----RLRLMGYVLSNMKVY--KDYNSALI-SLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLR-EDTEKKMIKISL  290 (343)
T ss_dssp             ----HHHHHHHHHHTCEEE--TTTTEEEE-EECHHHHHHTTCCTTTTTTGGGGGGGSTTCCEEEEEE-ECCCC--EEEEE
T ss_pred             ----HHHHHHHHHhceEEe--cCCCEEEE-EEcHHHHHHcCCCHHHHHHHHHHhcccCCEEEEEEEE-EecCCCEEEEEE
Confidence                233444445443321  11122221 1121111111000000000112234678899877776 431237899999


Q ss_pred             ecCCCCCHHHHHhH-cCCCccccccccccchhhhcc
Q 036793          300 RSVDSEDTTAIAQE-FGGGGHRNASSFMLSSAEFER  334 (338)
Q Consensus       300 RS~~~idv~~IA~~-fGGGGH~~AAG~~~~~~~~~~  334 (338)
                      ||++++||++||++ ||||||++|||++++ ..+++
T Consensus       291 RS~~~~~v~~i~~~~~ggGGH~~aag~~~~-~~~~~  325 (343)
T 3dma_A          291 RSVGKFPCNRLAAEFFNGGGHLNASGGEFY-GTMEE  325 (343)
T ss_dssp             EESSSCCHHHHHHHHTSCEECSSEEEEEEC-SCHHH
T ss_pred             ecCCCCCHHHHHHhCCCCCCcHHhCeeEEc-CCHHH
Confidence            99988999999999 999999999999997 34433

>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.1e-40  Score=309.20  Aligned_cols=269  Identities=14%  Similarity=0.162  Sum_probs=182.6

Q ss_pred             CCcEEEecC-CCchHHHHHHHHHHHHhcC--CCCeEEeeCC---CCCCCC-CCCCCCC--CCCeEEEEeCCCChHHHHHH
Q 036793           27 KKPAVLYHY-PCPDGAFAALAAHLYFSSS--SVPALFFPNT---VYNPIS-PNNLPLH--EIDDLYLLDYVGPSGFVQQV   97 (338)
Q Consensus        27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~--~~~v~~~p~~---~~~~~~-~~~~~~~--~~~~viivD~~~~~~~~~~l   97 (338)
                      .+++|++|. ||+||+||+++++++++++  ++++.+ +..   .+.++. .+++...  +.+++|+||++.+++.....
T Consensus        16 ~~i~I~~H~~PD~DaigSalal~~~l~~~~~~k~v~~-~~~~~~~~~fl~~~~~i~~~~~~~~lvi~VD~~~~~r~~~~~   94 (320)
T 3dev_A           16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYA-TGEAEPSLSFIGDLDEIDDSVYSDALVIVCDTANAPRIDDQR   94 (320)
T ss_dssp             SEEEEECBSSCCHHHHHHHHHHHHHHHHHCTTSEEEE-CCCCCGGGTTTCCCCCCCSSTTTTCEEEEESCSSGGGBSSGG
T ss_pred             CeEEEEeCCCCCchHHHHHHHHHHHHHHhCCCCEEEE-eCCCcchhhhccCcccccccccCCCEEEEECCCCchhcchhh
Confidence            456666666 8999999999999999987  444443 221   112211 2333222  34789999999887432233


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhc--ccCCccccchhhHHHHHHHHHhhcccccccc
Q 036793           98 SSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNK--FLDNGLQLHREFERLSLLFDYIEDGDLWRWR  175 (338)
Q Consensus        98 ~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~--~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~  175 (338)
                      ......+++||||+.++.    ++..+++.+...|||+|+|++++..  +++++     +..|+.+|+||++||+.|+|+
T Consensus        95 ~~~~~~vivIDHH~~~~~----~~~~~~i~p~~~St~eiv~~~~~~~~~~~~i~-----~~~A~~L~~GI~tDTg~F~~~  165 (320)
T 3dev_A           95 YLNGQSLIKIDHHPATDQ----YGDVNFVNTEASSTSEIIFDFISHFNDLSIID-----EHVARVLYLGIVGDTGRFLFS  165 (320)
T ss_dssp             GGSSSCEEEEECSCSSCC----CSSEEEECTTSSCHHHHHHHHHHTTTCTTTCC-----HHHHHHHHHHHHHHTTTTTST
T ss_pred             hhccCCEEEEcCCCCCCC----CCCeEEEecCCCcHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHccCcCCC
Confidence            445668899999999874    4566777666678999999999864  56664     567788999999999999999


Q ss_pred             ccchHHHHhhhhcccccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEecc
Q 036793          176 LENSKAFSSGLKDLNIEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDAD  254 (338)
Q Consensus       176 ~~~~~~~~~a~~l~~~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~  254 (338)
                      +|++++|++|++|++.|    +|+. +.+.+.+.+.+            +.++...++++.....  ++.+.+. .+..+
T Consensus       166 ~tt~~t~~aaa~L~~~G----ad~~~i~~~l~~~s~~------------~~~l~~~~l~~~~~~~--~g~~a~~-~~~~~  226 (320)
T 3dev_A          166 NTSPHTMEVASQLLAYP----FNHNAELNKMSEKDPK------------LMPFQGYVLQNFELSD--SHEYCQI-KITND  226 (320)
T ss_dssp             TCCHHHHHHHHHHHHSS----SCHHHHHHHHHCBCGG------------GHHHHHHHHHSCCBCT--TSSEEEE-EECHH
T ss_pred             CCCHHHHHHHHHHHHcC----CCHHHHHHHHHhCCHH------------HHHHHHHHHhceEEec--CCcEEEE-EEcHH
Confidence            99999999999999999    5666 55667554433            2234444444433221  2122221 22222


Q ss_pred             chHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCccccccccccc
Q 036793          255 AVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLS  328 (338)
Q Consensus       255 ~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AAG~~~~  328 (338)
                      ..+.+....+..-...+..+.++++.+++++. +.  ++.+++|+||++ +||++||++||||||++|||++++
T Consensus       227 ~~~~~~~~~~~~~~lv~~l~~i~gv~~~~~~~-~~--~~~~~~s~RS~~-~~v~~i~~~~gGGGH~~AAg~~~~  296 (320)
T 3dev_A          227 VLKQFDIQPNEASQFVNTVADISGLKIWMFGV-DE--GDQIRCRIRSKG-ITINDVANQFGGGGHPNASGVSVY  296 (320)
T ss_dssp             HHHHTTCCHHHHTTCGGGSTTBTTCCEEEEEE-EC--SSSEEEEEEESS-SCCHHHHHHTTCEEETTEEEEEES
T ss_pred             HHHHcCCCHHHHHHHHHHHhCcCCcEEEEEEE-EE--CCEEEEEEecCC-cCHHHHHHHcCCCCcHHhceeecC
Confidence            11111100111111123456788999877776 43  448999999998 999999999999999999999997

>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A

Probab=99.93  E-value=2e-24  Score=215.60  Aligned_cols=295  Identities=13%  Similarity=0.048  Sum_probs=159.5

Q ss_pred             HHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCC---CCCC--CCCCCCCCCCC
Q 036793            7 AMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTV---YNPI--SPNNLPLHEID   80 (338)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~---~~~~--~~~~~~~~~~~   80 (338)
                      .++++|.+++        .+...|+|++|.|+||++|+++++.+++++|+++.+ +|...   |...  .+++.. .+.+
T Consensus        60 ~Av~~i~~aI--------~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~~-~~~~  130 (666)
T 2zxr_A           60 EAAALLEEAL--------RQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHL-EASD  130 (666)
T ss_dssp             HHHHHHHHHH--------HTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC---------------------CC
T ss_pred             HHHHHHHHHH--------HcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhhc-cCCC
Confidence            4566777776        346677777778999999999999999999987655 45331   1111  122322 3568


Q ss_pred             eEEEEeCCCChH-HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCC-------cHHH----HHHHHHHhcccCC
Q 036793           81 DLYLLDYVGPSG-FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMER-------SGAT----IAYDYFKNKFLDN  148 (338)
Q Consensus        81 ~viivD~~~~~~-~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~-------s~a~----lv~~~l~~~~~~~  148 (338)
                      ++|+||++..+. .+..+.+.+..+++||||..++..    +...++.+...       |||+    |++.+++..+.++
T Consensus       131 LIItVD~G~~s~~~i~~a~~~g~~VIViDHH~~~~~~----p~a~iVnP~~~s~~~k~L~gaGVaf~Lv~aL~~~l~~~~  206 (666)
T 2zxr_A          131 LFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTP----PPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPP  206 (666)
T ss_dssp             EEEESCCC--------------CEEEEECCCC------------CEECGGGSTTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEcCCchhhhhHHHHHhCCCCEEEECCcCCCCcC----CCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            999999998872 244444556789999999998753    22233433222       5554    4555555555544


Q ss_pred             ccccchhhHHHHHHHHHhhccccccccccc-----hHHHH------hhhhccccccccc------------------CCH
Q 036793          149 GLQLHREFERLSLLFDYIEDGDLWRWRLEN-----SKAFS------SGLKDLNIEFSFQ------------------LNP  199 (338)
Q Consensus       149 ~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~-----~~~~~------~a~~l~~~g~~~~------------------~~~  199 (338)
                      .     ...+..+++|+++||..|++.|..     -+.++      ..+.+...|.+..                  .++
T Consensus       207 ~-----~~~adlvalGivaDt~~L~~~NR~lvk~GL~~l~~~~~~Gl~aLl~~~g~~~~~~~igF~i~PriNA~GRl~~a  281 (666)
T 2zxr_A          207 P-----LEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEA  281 (666)
T ss_dssp             C-----GGGHHHHHHHHHHTTCCCSHHHHHHHHHHHHHGGGCSSHHHHHHHHHTTCCSCHHHHHHTHHHHHHHHHHTTCH
T ss_pred             C-----HHHHHHHHHHHHHhccccchhhHHHHHHHHHHhhcCCCHHHHHHHHHcCCCCCHHHHHHHhhhhhhhccccCcH
Confidence            3     234456679999999998766511     11111      1111222221110                  122


Q ss_pred             H-HHHHHHccCHHHHHH---hhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEeccc-hHHHHHHHHHHHhhhcccC
Q 036793          200 C-LFEQLLSLDLESVIS---QGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADA-VAELRSELGHQLATKSHDL  274 (338)
Q Consensus       200 ~-~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~-~~~~~s~~~~~l~~~~~~~  274 (338)
                      . .++-|+..+.++..+   .-..++..++++...+++.+.. .+.....  +..+..++ -....+.++.++.+.... 
T Consensus       282 ~~~v~lLl~~d~~~a~~lA~~l~~lN~~Rk~i~~~i~~~A~~-~i~~~~~--~iv~~~~~wh~GViGIVAsrl~e~~~r-  357 (666)
T 2zxr_A          282 EKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLP-QADPEAK--AIVLLDPEGHPGVMGIVASRILEATLR-  357 (666)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCTTCS--SEEEECTTCCHHHHHHHHHHHHHHHCS-
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCe--EEEEEcCCcCcccHHHHHHHHHHHhCC-
Confidence            2 233445555544222   2333454555555555544332 1222112  22332222 234566677776654432 


Q ss_pred             CcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHc-----CCCccccccccccchhhhcccc
Q 036793          275 NLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF-----GGGGHRNASSFMLSSAEFERWK  336 (338)
Q Consensus       275 ~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~f-----GGGGH~~AAG~~~~~~~~~~~~  336 (338)
                           -++++.      .+  |+|.||.+++|+.++.+++     |||||+.|||++++...+++|+
T Consensus       358 -----P~iv~a------~~--kgSaRSi~g~nl~~~L~~~~~ll~~gGGH~~AAG~si~~~~l~~f~  411 (666)
T 2zxr_A          358 -----PVFLVA------QG--KGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFK  411 (666)
T ss_dssp             -----CEEEEE------TT--EEEEECCTTCCHHHHHHHTGGGCSEEEECSSEEEEECCGGGHHHHH
T ss_pred             -----CEEEEE------CC--EEEEECCCCccHHHHHHHHHhhCcccCCChHHcccccCcccHHHHH
Confidence                 122332      22  8999999889999999887     8999999999999988888775

>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*

Probab=99.92  E-value=2.8e-24  Score=198.86  Aligned_cols=263  Identities=15%  Similarity=0.106  Sum_probs=160.0

Q ss_pred             cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEe-eCCCC-------CCCCC--CCC-C--CCCCCeEEEEeCCCChHHH
Q 036793           29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFF-PNTVY-------NPISP--NNL-P--LHEIDDLYLLDYVGPSGFV   94 (338)
Q Consensus        29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~-p~~~~-------~~~~~--~~~-~--~~~~~~viivD~~~~~~~~   94 (338)
                      ++|++|. ||+||+|||+++++++++.|+++.++ +....       ....+  .++ .  ..+.+.+|+||++.+++..
T Consensus         4 i~I~gH~~pD~DaigSalal~~~l~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~   83 (309)
T 2haw_A            4 ILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSI   83 (309)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGGGSC
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHHHHcCCCeEEEECCCCCHHHHHHHHHcCCCcHHhhhhccCCCCEEEEEeCCCcccch
Confidence            5666676 89999999999999999988876654 32200       00001  111 1  1234589999999887432


Q ss_pred             HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793           95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW  174 (338)
Q Consensus        95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~  174 (338)
                      . .......+++||||+.+...  ..+...++++...|||+|+++++++.+++++     +..|+.+|+||++||++|+|
T Consensus        84 ~-~~~~~~~~~iIDHH~~~~~~--~~~~~~~~~~~~gSt~~lv~~~~~~~~~~i~-----~~~A~~L~~gI~~DT~~F~~  155 (309)
T 2haw_A           84 K-DIEEVQVLEVIDHHRIANFE--TAEPLYYRAEPVGCTATILNKMYKENNVKIE-----KEIAGLMLSAIISDSLLFKS  155 (309)
T ss_dssp             T-TGGGSEEEEEEECSCCCSCC--CSSCCEEEECCSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTTTS
T ss_pred             h-hhhhcCEEEEECCCcCCCcC--CCCCcEEEEccccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHhcCCCC
Confidence            2 22234467899999987632  1344556666667999999999999888875     56667889999999999999


Q ss_pred             cccchHHHHhhhhcc-cccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEe
Q 036793          175 RLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVD  252 (338)
Q Consensus       175 ~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~  252 (338)
                      +++++++|++|++|+ ..|+    |+. +.++++.....        +  .+.++...+++......++++++++... .
T Consensus       156 ~~tt~~d~~aa~~L~~~~G~----d~~~i~~~l~~~~~~--------~--~~~~~~~~l~~d~k~~~~~~~~v~i~~v-~  220 (309)
T 2haw_A          156 PTCTDQDVAAAKELAEIAGV----DAEEYGLNMLKAGAD--------L--SKKTVEELISLDAKEFTLGSKKVEIAQV-N  220 (309)
T ss_dssp             TTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHTC--------C--TTCCHHHHTTTTEEEEEETTEEEEEEEE-E
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHHhccC--------c--ccCCHHHHHHHHHHHHhcCCcEEEEEEE-E
Confidence            999999999999999 4884    555 44566542110        0  0112222233333223334445553333 3


Q ss_pred             ccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeec--CCCeEEEEEecCCCCCHHHHHhHcCCCcccccc
Q 036793          253 ADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQ--NDQLVKISLRSVDSEDTTAIAQEFGGGGHRNAS  323 (338)
Q Consensus       253 ~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~--~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AA  323 (338)
                      .+..       +.+...+...+       .++++.+++++. ...  .+..+.++.|+.     +.+.+.||+  |..+.
T Consensus       221 ~~~~~~~~~~~~~~~~~v~~~~-------~~~gvd~~~l~~-~~i~~~~~~l~v~g~~~-----~~~~~af~~--~~~~~  285 (309)
T 2haw_A          221 TVDIEDVKKRQAELEAVISKVV-------AEKNLDLFLLVI-TDILENDSLALAIGNEA-----AKVEKAFNV--TLENN  285 (309)
T ss_dssp             ESCHHHHHTTHHHHHHHHHHHH-------HHTTCSEEEEEE-EETTTTEEEEEEESTTT-----HHHHHHHTC--CCBTT
T ss_pred             ecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEE-EEecCCCeEEEEEeCCh-----hHHHHHhCC--CCCCC
Confidence            2221       22333332222       245666666665 211  233344444432     467888976  77776


Q ss_pred             ccccch
Q 036793          324 SFMLSS  329 (338)
Q Consensus       324 G~~~~~  329 (338)
                      .+.+++
T Consensus       286 ~~~l~~  291 (309)
T 2haw_A          286 TALLKG  291 (309)
T ss_dssp             EEEEET
T ss_pred             eEECCC
Confidence            666553

>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1

Probab=99.92  E-value=2.1e-24  Score=185.66  Aligned_cols=166  Identities=15%  Similarity=0.083  Sum_probs=120.3

Q ss_pred             cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEE-eeCCCC-------CCCCC--C----CCCCCCCCeEEEEeCCCChHH
Q 036793           29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALF-FPNTVY-------NPISP--N----NLPLHEIDDLYLLDYVGPSGF   93 (338)
Q Consensus        29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~-------~~~~~--~----~~~~~~~~~viivD~~~~~~~   93 (338)
                      ++|+.|. ||+||+||++++++++++.|+++.+ +|....       ....+  .    ++. .+.+.+|+||++..++.
T Consensus         4 i~I~gH~~pD~DaigSa~al~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~vi~VD~~~~~r~   82 (188)
T 1wpn_A            4 ILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAA-NEVNGVILVDHNERQQS   82 (188)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCST-TTCSEEEEESCCCGGGS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCchhhhhhhc-cCCCeEEEEeCCCcccc
Confidence            5566665 8999999999999999999887665 443210       00011  1    111 23468999999987742


Q ss_pred             HHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccccc
Q 036793           94 VQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWR  173 (338)
Q Consensus        94 ~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~  173 (338)
                      ...+ +....+++||||+.+...  ..+...++++...|||+|+++++++.+++++     +..++.+|+||++||+.|+
T Consensus        83 ~~~~-~~~~~vivIDHH~~~~~~--~~~~~~~~~~~~~St~~lv~~~~~~~~~~i~-----~~~A~~l~~gI~~DTg~f~  154 (188)
T 1wpn_A           83 IKDI-EEVQVLEVIDHHRIANFE--TAEPLYYRAEPVGCTATILNKMYKENNVKIE-----KEIAGLMLSAIISDSLLFK  154 (188)
T ss_dssp             CTTG-GGSEEEEEEECSCCCSCC--CSSCCEEEECSSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTTT
T ss_pred             hhhh-ccCCeEEEECCCCCCCCC--CCCCeEEEeccccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHHhccC
Confidence            2222 334478899999987632  1345566666667999999999999888775     5667788999999999999


Q ss_pred             ccccchHHHHhhhhcc-cccccccCCHH-HHHHHHc
Q 036793          174 WRLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLS  207 (338)
Q Consensus       174 ~~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~  207 (338)
                      |+++++++|++|++|+ +.|+    |+. +++++++
T Consensus       155 ~~~tt~~~~~~aa~L~~~~g~----d~~~i~~~l~~  186 (188)
T 1wpn_A          155 SPTCTDQDVAAAKELAEIAGV----DAEEYGLNMLK  186 (188)
T ss_dssp             STTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHh
Confidence            9999999999999999 5884    554 5566553

>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=6.9e-23  Score=189.36  Aligned_cols=260  Identities=15%  Similarity=0.068  Sum_probs=150.1

Q ss_pred             cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCC-------C--CCCCCCC-CCCCCCeEEEEeCCCChHHHHHH
Q 036793           29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVY-------N--PISPNNL-PLHEIDDLYLLDYVGPSGFVQQV   97 (338)
Q Consensus        29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~-------~--~~~~~~~-~~~~~~~viivD~~~~~~~~~~l   97 (338)
                      ++|++|. ||+|++|||+++++++   ++ ..+.+....       .  .....++ ...+.+.+++||++..++.... 
T Consensus         2 i~I~gH~~pD~DaigSalal~~~l---~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~~-   76 (307)
T 2eb0_A            2 RYVVGHKNPDTDSIASAIVLAYFL---DC-YPARLGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDD-   76 (307)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHHH---TS-EEEESSCCCHHHHHHHHHHTCCCCEECCCCTTCEEEEESCCCGGGSCTT-
T ss_pred             EEEEeCCCCChHHHHHHHHHHHHh---CC-eEEEcCCCCHHHHHHHHHcCCCchhhhhhccCCeEEEEeCCCcccchhh-
Confidence            4566676 8999999999999998   22 222332210       0  0001111 1113568999999987743222 


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcc--------cCCccccchhhHHHHHHHHHhhcc
Q 036793           98 SSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKF--------LDNGLQLHREFERLSLLFDYIEDG  169 (338)
Q Consensus        98 ~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~--------~~~~~~~a~~~~~~~~l~gi~~Dt  169 (338)
                      ......+++||||+.+ ..  ....+.++++...|||+|+++++++.+        +.++     +..|+.+|+||++||
T Consensus        77 ~~~~~~~~iIDHH~~~-~~--~~~~~~~~~~~~gSt~tlv~~~~~~~~~~~~~~~~~~i~-----~~~A~~L~~gI~~DT  148 (307)
T 2eb0_A           77 LEEGKLIAIIDHHKVG-LT--TTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELK-----PDLAGLLLSAIISDT  148 (307)
T ss_dssp             GGGSEEEEEEESSCCC-CC--CSSCCEEEECSSSCHHHHHHHHHHTTCGGGGTCCCCCCC-----HHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEcCCCCc-cC--CCCCcEEEEeecchHHHHHHHHHHhcCccccccccccCC-----HHHHHHHHHHHHHHh
Confidence            2234467899999997 21  123445566666799999999999887        7764     566678899999999


Q ss_pred             ccccccccchHHHHhhhhccc-ccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccc
Q 036793          170 DLWRWRLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGH  247 (338)
Q Consensus       170 d~~~~~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  247 (338)
                      ++|+|+++++++|+++++|++ .|+   .++. ++++++.....          ..+.++...+++......++++++++
T Consensus       149 ~~f~~~~tt~~d~~aa~~L~~~~g~---~d~~~i~~~l~~~~~~----------~~~~~~~~~l~~d~k~~~~~~~~v~i  215 (307)
T 2eb0_A          149 VLFKSPTTTDLDKEMAKKLAEIAGI---SNIEEFGMEILKAKSV----------VGKLKPEEIINMDFKNFDFNGKKVGI  215 (307)
T ss_dssp             TTTTSTTCCHHHHHHHHHHHHHHTC---SCHHHHHHHHHHHHHG----------GGGSCHHHHHTTSEEEEEETTEEEEE
T ss_pred             cCCCCCCCCHHHHHHHHHHHhhCCC---ccHHHHHHHHHHhhcC----------cccCCHHHHHHHhhhheEECCEEEEE
Confidence            999999999999999999994 674   1444 55566542210          01112223333333333335545554


Q ss_pred             eEEEeccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCccc
Q 036793          248 CLAVDADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHR  320 (338)
Q Consensus       248 ~~~v~~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~  320 (338)
                      ... ..+..       +.+...+...+       .++++.+++++. ....+...++.+.++    .+.+.+.||+  |.
T Consensus       216 ~~v-~~~~~~~~~~~~~~~~~~v~~~~-------~~~g~d~~~l~~-~~i~~~~~~l~v~g~----~~~~~~af~~--~~  280 (307)
T 2eb0_A          216 GQV-EVIDVSEVESKKEDIYKLLEEKL-------KNEGYDLIVFLI-TDIMKEGSEALVVGN----KEMFEKAFNV--KV  280 (307)
T ss_dssp             EEE-EESCTHHHHHHHHHHHHHHHHHH-------HHTTCSEEEEEE-EETTTTEEEEEEEEC----HHHHHHHC-----C
T ss_pred             EEE-EecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEE-EEecCCCcEEEEEeC----HHHHHHHhCC--CC
Confidence            333 32211       22223222222       345677666665 221122234444443    3556788954  77


Q ss_pred             cccccccch
Q 036793          321 NASSFMLSS  329 (338)
Q Consensus       321 ~AAG~~~~~  329 (338)
                      .+..+.+++
T Consensus       281 ~~~~~~l~g  289 (307)
T 2eb0_A          281 EGNSVFLEG  289 (307)
T ss_dssp             CSSEEEETT
T ss_pred             CCCeEECCC
Confidence            776665553

>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A

Probab=99.89  E-value=6.3e-23  Score=189.77  Aligned_cols=167  Identities=14%  Similarity=0.029  Sum_probs=116.6

Q ss_pred             cEEEecC-CCchHHHHHHHHHHHH-hcCCCCeEEe-eCCCC-------CCCC--CCCC-CC-CC-C-CeEEEEeCCCChH
Q 036793           29 PAVLYHY-PCPDGAFAALAAHLYF-SSSSVPALFF-PNTVY-------NPIS--PNNL-PL-HE-I-DDLYLLDYVGPSG   92 (338)
Q Consensus        29 ~iii~h~-~D~DgigSa~~l~~~~-~~~~~~v~~~-p~~~~-------~~~~--~~~~-~~-~~-~-~~viivD~~~~~~   92 (338)
                      ++|++|. ||+|++|||+++++++ ++.|+++.++ |....       ....  ..++ .. .. . +.+|+||++.+.+
T Consensus         3 i~I~gH~~pD~DaigSalal~~~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r   82 (310)
T 1k20_A            3 ILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQ   82 (310)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHHHHHHHCCCEEECBSSCCCHHHHHHHHHHTCCCCCBCSCTGGGTCSEEEEESCCCGGG
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHcCCCchhhhhhhccccCceEEEEcCCCccc
Confidence            5666676 8999999999999999 8888776653 22100       0000  0111 11 11 2 5799999998864


Q ss_pred             HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccc
Q 036793           93 FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLW  172 (338)
Q Consensus        93 ~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~  172 (338)
                      ....+ .....+++||||+.+... ...+...++.+ ..|||+|+++++++.+++++     +..|+.+|+||++||++|
T Consensus        83 ~~~~~-~~~~~~~iIDHH~~~~~~-~~~~~~~~i~p-~gSt~tiv~~~~~~~~~~i~-----~~~A~~L~~gI~~DT~~F  154 (310)
T 1k20_A           83 SVADI-AEVEVYGVVDHHRVANFE-TANPLYMRLEP-VGSASSIVYRMFKEHSVAVS-----KEIAGLMLSGLISDTLLL  154 (310)
T ss_dssp             SCTTG-GGSEEEEEEECSCCCSCC-CSSCCEEEECS-SSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTT
T ss_pred             ccccc-cccCEEEEECCCcCCCcC-CCCCcEEEEEE-ccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHhcCC
Confidence            32222 334478999999997521 01122344544 67999999999999888875     566678899999999999


Q ss_pred             cccccchHHHHhhhhcc-cccccccCCHH-HHHHHHc
Q 036793          173 RWRLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLS  207 (338)
Q Consensus       173 ~~~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~  207 (338)
                      +|+++++++|++|++|+ ..|+    |+. +.++++.
T Consensus       155 ~~~~tt~~d~~aa~~L~~~~G~----d~~~i~~~l~~  187 (310)
T 1k20_A          155 KSPTTHPTDKAIAPELAELAGV----NLEEYGLAMLK  187 (310)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence            99999999999999999 5884    555 5556655

>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*

Probab=99.75  E-value=2.2e-19  Score=171.36  Aligned_cols=154  Identities=13%  Similarity=0.040  Sum_probs=103.8

Q ss_pred             CCcEEEecC-CCchHHHHHHHHHHHHhcCC---------CC--eEEe---eC--CCCCC-----C---C--CCCCC----
Q 036793           27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSS---------VP--ALFF---PN--TVYNP-----I---S--PNNLP----   75 (338)
Q Consensus        27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~---------~~--v~~~---p~--~~~~~-----~---~--~~~~~----   75 (338)
                      ..++|+.|. ||+|++|||+++++++++.+         ++  +..+   |.  ...++     +   .  .+++.    
T Consensus        28 ~~iiV~gH~~pD~DaigSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~e~~~~L~~~~~~~~~l~~~~~  107 (397)
T 2qb7_A           28 VLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIED  107 (397)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCHHHHHHHHHTTCCGGGSCCHHH
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCHHHHHHHHHcCCChhhcccHHH
Confidence            345566665 79999999999999997765         22  2222   10  00100     0   0  11110    


Q ss_pred             CC--------CCC-eEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhc--
Q 036793           76 LH--------EID-DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNK--  144 (338)
Q Consensus        76 ~~--------~~~-~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~--  144 (338)
                      ..        ..+ .+|+||++...+....+  ....+++||||+.+...  ......++ ++..|||+|+++++++.  
T Consensus       108 ~~~~~~~~~~~~~~~vilVD~~~~~r~~~~~--~~~~~~iIDHH~~~~~~--~~~~~~~i-~p~gSt~tlv~~~~~~~~~  182 (397)
T 2qb7_A          108 LKSLKQNVSQGTELNSYLVDNNDTPKNLKNY--IDNVVGIIDHHFDLQKH--LDAEPRIV-KVSGSCSSLVFNYWYEKLQ  182 (397)
T ss_dssp             HHHHHHHSCTTCEEEEEEESCSSCCGGGTTT--CCEEEEEEECSCCCCCC--TTCSSEEE-CCCSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcccCCCeEEEecCCCcccCcccc--cccEEEEEcCCCCCCCC--CCCCccEE-eecccHHHHHHHHHHHhhh
Confidence            01        223 58999999887543333  34467899999986542  11233344 44679999999999986  


Q ss_pred             -ccCCccccchhhHHHHHHHHHhhccccccccccchHHHHhhhhcccc
Q 036793          145 -FLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNI  191 (338)
Q Consensus       145 -~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~  191 (338)
                       +++++     +..|+.+|+||++||++|+ ++++++++++|++|++.
T Consensus       183 ~~~~i~-----~~~A~~L~~gI~~DT~~F~-~~tt~~d~~aa~~L~~~  224 (397)
T 2qb7_A          183 GDREVV-----MNIAPLLMGAILIDTSNMR-RKVEESDKLAIERCQAV  224 (397)
T ss_dssp             TCHHHH-----HHHHHHHHHHHHHHTTTTT-SSCCHHHHHHHHHHHHH
T ss_pred             ccCCcC-----HHHHHHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHH
Confidence             66663     5667788999999999999 68999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1wpna_	187	Manganese-dependent inorganic pyrophosphatase (fam	99.9
d1ir6a_	385	Exonuclease RecJ {Thermus thermophilus [TaxId: 274	99.84
d1k20a_	310	Manganese-dependent inorganic pyrophosphatase (fam	99.81

>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Manganese-dependent inorganic pyrophosphatase (family II)
domain: Manganese-dependent inorganic pyrophosphatase (family II)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1.3e-23  Score=178.53  Aligned_cols=167  Identities=17%  Similarity=0.101  Sum_probs=118.1

Q ss_pred             CcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCC--------CCC--CCC---CCCCCCeEEEEeCCCChHH
Q 036793           28 KPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVYNP--------ISP--NNL---PLHEIDDLYLLDYVGPSGF   93 (338)
Q Consensus        28 ~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~--------~~~--~~~---~~~~~~~viivD~~~~~~~   93 (338)
                      +++|++|. ||+||+|||++++.++++.|+++.++......+        ...  ..+   .....+.+++||++...+.
T Consensus         2 kI~I~~H~~pD~DaigSalal~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~~~~~   81 (187)
T d1wpna_           2 KILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQS   81 (187)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGGGS
T ss_pred             eEEEecCCCCChHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHcCCcccccccccccccceeeecccCChhcc
Confidence            45667776 799999999999999999999877654321110        001  111   1234578999999887643


Q ss_pred             HHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccccc
Q 036793           94 VQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWR  173 (338)
Q Consensus        94 ~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~  173 (338)
                      ... ......+++||||+.....  ......++.+...|||+|+++++++.+++++     +..++.+|+||++||++|+
T Consensus        82 ~~~-~~~~~~v~vIDHH~~~~~~--~~~~~~~~~~~~sst~~iv~~l~~~~~~~i~-----~~~A~~L~~gI~tDTg~F~  153 (187)
T d1wpna_          82 IKD-IEEVQVLEVIDHHRIANFE--TAEPLYYRAEPVGCTATILNKMYKENNVKIE-----KEIAGLMLSAIISDSLLFK  153 (187)
T ss_dssp             CTT-GGGSEEEEEEECSCCCSCC--CSSCCEEEECSSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTTT
T ss_pred             hhH-HhhcCcEEEEecccccccC--cccceeeecCccccHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHHhCcCC
Confidence            222 2344578899999865431  1222333444456888999999999988875     4566788999999999999


Q ss_pred             ccccchHHHHhhhhcccc-cccccCCHH-HHHHHH
Q 036793          174 WRLENSKAFSSGLKDLNI-EFSFQLNPC-LFEQLL  206 (338)
Q Consensus       174 ~~~~~~~~~~~a~~l~~~-g~~~~~~~~-~~~~l~  206 (338)
                      |+++++++|++|++|++. |+    |+. +.++++
T Consensus       154 ~~~tt~~~~~~a~~L~~~~g~----d~~~~~~~~f  184 (187)
T d1wpna_         154 SPTCTDQDVAAAKELAEIAGV----DAEEYGLNML  184 (187)
T ss_dssp             STTCCHHHHHHHHHHHHHHTS----CHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHH
Confidence            999999999999999984 84    554 555554

>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=2.9e-19  Score=167.49  Aligned_cols=300  Identities=14%  Similarity=0.109  Sum_probs=167.2

Q ss_pred             HHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCC--CCCCCCC---CCCCCCC
Q 036793            6 HAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTV--YNPISPN---NLPLHEI   79 (338)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~--~~~~~~~---~~~~~~~   79 (338)
                      .+++++|.+++        .++..|+|+.|.|.||++|++.++.+++++|.++.+ +|...  +..+..+   ++. ++.
T Consensus        11 ~~A~~~i~~ai--------~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~-~~~   81 (385)
T d1ir6a_          11 REAAALLEEAL--------RQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHL-EAS   81 (385)
T ss_dssp             HHHHHHHHHHH--------HTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHH-TTC
T ss_pred             HHHHHHHHHHH--------HCCCEEEEEeCCCcchHHHHHHHHHHHHHCCCCeEEECCCccccCCCcCHHHHHHHh-hcC
Confidence            46778888887        468899999999999999999999999999987654 67542  2223322   222 457


Q ss_pred             CeEEEEeCCCCh-HHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCccccc-----C--CCCcHHHHHHHHHHhcccCCccc
Q 036793           80 DDLYLLDYVGPS-GFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTI-----D--MERSGATIAYDYFKNKFLDNGLQ  151 (338)
Q Consensus        80 ~~viivD~~~~~-~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~-----d--~~~s~a~lv~~~l~~~~~~~~~~  151 (338)
                      +++|+||++..+ ..+..+...+..++++|||...+..   +... ++.     +  ..-|+|.++|.+++.........
T Consensus        82 ~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~---~~~~-iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~  157 (385)
T d1ir6a_          82 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTP---PPGL-VVHPALTPDLKEKPTGAGVAFLLLWALHERLGLP  157 (385)
T ss_dssp             SEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSC---CSSE-EECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCC
T ss_pred             CeEEEecccccchhhHhhHhhcCCceecccccccccCc---chhh-hhcCcCCCcchhccchhHHHHHHHHHHhhhhhhh
Confidence            899999999987 5566667778899999999875532   1111 111     1  12378877777665432111000


Q ss_pred             cchhhHHHHH-HHHHhhcccccccc-------------ccc---hHHHHhhhhcc----cccccc---------cCCHHH
Q 036793          152 LHREFERLSL-LFDYIEDGDLWRWR-------------LEN---SKAFSSGLKDL----NIEFSF---------QLNPCL  201 (338)
Q Consensus       152 ~a~~~~~~~~-l~gi~~Dtd~~~~~-------------~~~---~~~~~~a~~l~----~~g~~~---------~~~~~~  201 (338)
                        .....+.+ .+|.+.|---+.-.             .+.   -+.+.......    ..+|.+         ..++..
T Consensus       158 --~~~~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~  235 (385)
T d1ir6a_         158 --PPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEK  235 (385)
T ss_dssp             --CCGGGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHH
T ss_pred             --chhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhhcccHHHHHHHhhhhcccchhhhhhhhhhhhccccccccchh
Confidence              01111122 24555554432110             000   01110000000    001110         023332


Q ss_pred             HHH-HHccCHHH---HHHhhhHHHHHHHHHHHHHHhhhhhheeccccccceEEE-eccchHHHHHHHHHHHhhhcccCCc
Q 036793          202 FEQ-LLSLDLES---VISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAV-DADAVAELRSELGHQLATKSHDLNL  276 (338)
Q Consensus       202 ~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v-~~~~~~~~~s~~~~~l~~~~~~~~i  276 (338)
                      .-+ |+..+..+   +...-..+.+.++++.+.+++.+....... .-  ...+ ..+.-+.+...++..+.+....   
T Consensus       236 a~~lL~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~-~~--~i~~~~~~~~~GviGivAsrl~~~~~k---  309 (385)
T d1ir6a_         236 ALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPE-AK--AIVLLDPEGHPGVMGIVASRILEATLR---  309 (385)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTT-SS--SEEEECTTCCHHHHHHHHHHHHHHHCS---
T ss_pred             hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc--eEEEecCCcccchhhhhHHHHHHHcCC---
Confidence            222 33444432   222233444455555555555443222111 11  1222 2222345667777777765432   


Q ss_pred             ceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHc-----CCCccccccccccchhhhccccc
Q 036793          277 RGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF-----GGGGHRNASSFMLSSAEFERWKV  337 (338)
Q Consensus       277 ~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~f-----GGGGH~~AAG~~~~~~~~~~~~~  337 (338)
                       ++  +++.      .+  |.|.||.+++|+.++.++.     .||||+.||||+++.+.+++|+.
T Consensus       310 -P~--iv~~------~~--kGS~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~  364 (385)
T d1ir6a_         310 -PV--FLVA------QG--KGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKA  364 (385)
T ss_dssp             -CE--EEEE------TT--EEEEECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHH
T ss_pred             -CE--EEEe------cC--eEEEeCCCCCCHHHHHHHHhchhhcCCChhHcceEEEcHHHHHHHHH
Confidence             23  2332      33  7899998789999987653     39999999999999998888863

>d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Streptococcus gordonii [TaxId: 1302]}

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Manganese-dependent inorganic pyrophosphatase (family II)
domain: Manganese-dependent inorganic pyrophosphatase (family II)
species: Streptococcus gordonii [TaxId: 1302]

Probab=99.81  E-value=1.5e-19  Score=164.34  Aligned_cols=168  Identities=15%  Similarity=0.077  Sum_probs=114.1

Q ss_pred             CcEEEecC-CCchHHHHHHHHHHHHhc-CCCCeEEeeCCCCC----------CCCCCCC----CCCCCCeEEEEeCCCCh
Q 036793           28 KPAVLYHY-PCPDGAFAALAAHLYFSS-SSVPALFFPNTVYN----------PISPNNL----PLHEIDDLYLLDYVGPS   91 (338)
Q Consensus        28 ~~iii~h~-~D~DgigSa~~l~~~~~~-~~~~v~~~p~~~~~----------~~~~~~~----~~~~~~~viivD~~~~~   91 (338)
                      +++|++|. ||+|++|||++++.++.+ .++.+.++.....+          .....++    .....+.+++||++...
T Consensus         2 kIlV~GH~~pD~DsigSalala~~l~~~~g~~~~~~~~~~~~~e~~~~l~~~~i~~~~li~~~~~~~~~~vilVDhn~~~   81 (310)
T d1k20a_           2 KILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQ   81 (310)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHHHHHHHHCCCEEECBSSCCCHHHHHHHHHHTCCCCCBCSCTGGGTCSEEEEESCCCGG
T ss_pred             cEEEECCCCCChHHHHHHHHHHHHHHHhCCCCeEEEECCCCChHHHHHHHhcCCcchhhhhhhccccCceEEEcCCCChh
Confidence            45666676 899999999999988764 45555543322110          0011111    11245789999998766


Q ss_pred             HHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccc
Q 036793           92 GFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDL  171 (338)
Q Consensus        92 ~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~  171 (338)
                      +....+ .....+.+||||+.+...  ......++.+...|||+|+++++++.+++++     +..+..+|.||++||+.
T Consensus        82 ~~~~~~-~~~~v~~iIDHH~~~~~~--~~~~~~~~~~~~gSt~tlV~~~~~~~~~~i~-----~~~A~lLl~gIl~DT~~  153 (310)
T d1k20a_          82 QSVADI-AEVEVYGVVDHHRVANFE--TANPLYMRLEPVGSASSIVYRMFKEHSVAVS-----KEIAGLMLSGLISDTLL  153 (310)
T ss_dssp             GSCTTG-GGSEEEEEEECSCCCSCC--CSSCCEEEECSSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTT
T ss_pred             hhhhhH-hhcceEEEEEecccCCcc--ccCceEEEECCcCcHHHHHHHHHHHhCCCCC-----HHHHHHHhhhHhHhhCc
Confidence            432222 233456789999865432  1233445555567999999999999988875     45567788999999999


Q ss_pred             ccccccchHHHHhhhhcccc-cccccCCHH-HHHHHHc
Q 036793          172 WRWRLENSKAFSSGLKDLNI-EFSFQLNPC-LFEQLLS  207 (338)
Q Consensus       172 ~~~~~~~~~~~~~a~~l~~~-g~~~~~~~~-~~~~l~~  207 (338)
                      |++++++++++.+|.+|.+. |+    |+. .+.++++
T Consensus       154 f~~~~tt~~d~~~a~~L~~~~g~----d~~~~~~~l~~  187 (310)
T d1k20a_         154 LKSPTTHPTDKAIAPELAELAGV----NLEEYGLAMLK  187 (310)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhccC----CHHHHHHHHHH
Confidence            99999999999999999874 74    554 5566654