Citrus Sinensis ID: 036810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASAGHEADVVVH
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
vdesvtkldcrvppvlkqvPAQALSAAQMAPVVARSVASEVKtagvagtasgmaksvyTKYEPAAKElyskyepkaEQYAVSAWRklnqmplfpqvaqVVVPtaaycsekynQTVVSaadkgykvssylplvpteRIAKVFSngvvesqplasagheadvvvh
Flexible Loop (DISEMBL)
vdesvtkldcrvppvLKQVPAQALSAAQMAPVVARSVASEVKTagvagtasgmaksvYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESqplasagheadvvvh
Low Complexity Region (SEG)
VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFpqvaqvvvptaaYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASAGHEADVVVH
Disordered region (IsUnstruct)
*******************************VVA******V*TAGVAGTA*GMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVV*****************
Disordered Region (DISOPRED)
***SVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAK************************
Disordered Region (DISEMBL)
VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPL************
Disordered Region (DISPRO)
*DESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNG*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASAGHEADVVVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9MA63	246	REF/SRPP-like protein At3	yes	no	0.926	0.613	0.741	7e-56
Q9SW70	248	Stress-related protein OS	N/A	no	0.883	0.580	0.625	1e-44
O82803	204	Small rubber particle pro	N/A	no	0.785	0.627	0.552	9e-35
Q41112	167	Stress-related protein OS	N/A	no	0.717	0.700	0.559	8e-34
A2Y0H2	253	REF/SRPP-like protein OsI	N/A	no	0.803	0.517	0.492	6e-33
Q9FRA7	253	REF/SRPP-like protein Os0	no	no	0.803	0.517	0.492	8e-33
O82246	235	REF/SRPP-like protein At2	no	no	0.748	0.519	0.402	7e-24
Q9FYF7	240	REF/SRPP-like protein At1	no	no	0.760	0.516	0.300	1e-07

>sp|Q9MA63|Y3550_ARATH REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1

 Score =  216 bits (549), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 136/151 (90%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+K
Sbjct: 90  VDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSK 149

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLFP++AQV VPTAA+CSEKYN TVV AA+
Sbjct: 150 YEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAE 209

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPL 151
           KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct: 210 KGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW70|SRP_VITRI Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 113/144 (78%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           V+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K
Sbjct: 88  VEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSK 147

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
            EP AKEL SKYEP AEQYAVSAWR LN++PLFPQVAQVVVPTAAY SEKYNQ+V   A+
Sbjct: 148 CEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAE 207

Query: 121 KGYKVSSYLPLVPTERIAKVFSNG 144
           +GY V+ YLPL+PTERIAKVF +G
Sbjct: 208 RGYTVALYLPLIPTERIAKVFQDG 231

Vitis riparia (taxid: 96939)

>sp|O82803|SRPP_HEVBR Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 91/143 (63%), Gaps = 15/143 (10%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV              
Sbjct: 74  VDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV-------------- 119

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
            +  AK LY+  EPKAEQYAV  WR LN++PL PQVA VVVPTA Y SEKYN  V    +
Sbjct: 120 -QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTE 178

Query: 121 KGYKVSSYLPLVPTERIAKVFSN 143
           +GY+VSSYLPL+PTE+I KVF +
Sbjct: 179 QGYRVSSYLPLLPTEKITKVFGD 201

Involved in the biosynthesis of rubber, an isoprenoid polymer (cis-1,4-polyisoprene).

Hevea brasiliensis (taxid: 3981)

>sp|Q41112|SRP_PHAVU Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1

 Score =  142 bits (359), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 96/143 (67%), Gaps = 26/143 (18%)

Query: 2   DESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKY 61
           D  V +LD  VP  +K+V +QA           RSV SEV+  GV    S  AK+VY   
Sbjct: 51  DRKVGELDRHVPSNVKKVSSQA-----------RSVVSEVRRDGV----STFAKTVY--- 92

Query: 62  EPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADK 121
                   SKYEP AEQ AVSAWRKLNQ+PLFPQVA  V+P AAYC+EKYN+ +VS+A+K
Sbjct: 93  --------SKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEK 144

Query: 122 GYKVSSYLPLVPTERIAKVFSNG 144
           GY+VS+YLPLVPTE+IAKVFS  
Sbjct: 145 GYRVSAYLPLVPTEKIAKVFSGN 167

Plays a role in plant defense.

Phaseolus vulgaris (taxid: 3885)

>sp|A2Y0H2|Y5513_ORYSI REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 11/142 (7%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           V ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   +
Sbjct: 103 VGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIAR 151

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
            EP A++LY++YEP AE+ A  AW  LN++PL P V + V+P AA  S +YN  V   A 
Sbjct: 152 AEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAK 211

Query: 121 KGYKVSSYLPLVPTERIAKVFS 142
           +G  V++YLPLVPTER+++VF 
Sbjct: 212 RGSAVATYLPLVPTERLSRVFG 233

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9FRA7|Y5513_ORYSJ REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2

 Score =  139 bits (350), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 11/142 (7%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           V ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   +
Sbjct: 103 VGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIAR 151

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
            EP A++LY++YEP AE+ A  AW  LN++PL P V + V+P AA  S +YN  V   A 
Sbjct: 152 AEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAK 211

Query: 121 KGYKVSSYLPLVPTERIAKVFS 142
           +G  V++YLPLVPTER+++VF 
Sbjct: 212 RGSAVATYLPLVPTERLSRVFG 233

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82246|Y2778_ARATH REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1

 Score =  109 bits (273), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 22/144 (15%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD+    ++  VP ++KQ  +QAL+           VA+EV+  GV  T   +A+SV  K
Sbjct: 109 VDDVFFDVETYVPSLVKQASSQALT-----------VATEVQRTGVVDTTKSIARSVRDK 157

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEPA           AE YA + WR LNQ+PLFP+VA +V+PTA Y SEKYN  V    D
Sbjct: 158 YEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGD 206

Query: 121 KGYKVSSYLPLVPTERIAKVFSNG 144
           + Y  + YLP++P E+I+ +    
Sbjct: 207 RDYFGAEYLPMIPIEKISDILEQD 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYF7|Y1736_ARATH REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           V E   K D   PP+ K+V  QA      A   A+S   E +T G               
Sbjct: 81  VGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG--------------- 125

Query: 61  YEPAAKELY--SKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSA 118
             P A   Y  ++Y+      +V  W KLNQ      +    +P AA+ S +YN  V   
Sbjct: 126 --PKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDM 183

Query: 119 ADKGYKVSSYLPLVPTERIAKVF 141
            + GY +  YLPLVP + I K +
Sbjct: 184 TNMGYSLVGYLPLVPVDDIVKAY 206

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
37622210	170	small rubber particle protein [Hevea bra	0.944	0.905	0.772	3e-61
255542728	241	Rubber elongation factor protein, putati	0.944	0.639	0.772	5e-60
224125182	241	predicted protein [Populus trichocarpa]	0.938	0.634	0.779	1e-59
259019463	252	rubber elongation factor [Morus alba]	1.0	0.646	0.730	2e-59
224123588	242	predicted protein [Populus trichocarpa]	0.944	0.636	0.766	4e-59
224102669	146	predicted protein [Populus trichocarpa]	0.865	0.965	0.808	3e-58
449435657	242	PREDICTED: REF/SRPP-like protein At3g055	0.938	0.632	0.699	1e-54
297829074	246	rubber elongation factor family protein	0.926	0.613	0.748	1e-54
15230002	246	Rubber elongation factor protein [Arabid	0.926	0.613	0.741	3e-54
372477634	246	rubber elongation factor [Copaifera offi	0.938	0.621	0.692	2e-53

>gi|37622210|gb|AAO66433.2| small rubber particle protein [Hevea brasiliensis]

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 135/154 (87%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVT LD RVPPV+KQV AQA S A+ APV AR+VASEV  +GV  TASG+AK++YTK
Sbjct: 17  VDESVTSLDSRVPPVVKQVSAQAYSVAREAPVAARAVASEVHQSGVKETASGLAKTLYTK 76

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP AKELYSKYEPKAEQ AV+AWR+LNQ+PLFPQVAQVVVPTAAYCSEKYNQTV+S  +
Sbjct: 77  YEPKAKELYSKYEPKAEQCAVTAWRRLNQLPLFPQVAQVVVPTAAYCSEKYNQTVLSTFE 136

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 154
           KGY+VSSYLPLVPTERIAKVFS+ V +S PL S+
Sbjct: 137 KGYRVSSYLPLVPTERIAKVFSDDVAQSMPLVSS 170

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542728|ref|XP_002512427.1| Rubber elongation factor protein, putative [Ricinus communis] gi|223548388|gb|EEF49879.1| Rubber elongation factor protein, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 134/154 (87%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVTKLD RVPPV+KQV AQA S A+ APV AR+VASEV+  GV  TASG+AK++Y  
Sbjct: 88  VDESVTKLDRRVPPVVKQVSAQAYSVAREAPVAARAVASEVQRTGVKETASGLAKTLYAM 147

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP AKELYSKYEPKAEQ AVSAWRKLNQ+PLFPQVAQV VPTAAYCSEKYNQTVVS A+
Sbjct: 148 YEPKAKELYSKYEPKAEQCAVSAWRKLNQLPLFPQVAQVFVPTAAYCSEKYNQTVVSTAE 207

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 154
           KGY+VSSYLPLVPT++IA+VF N V ES P+AS+
Sbjct: 208 KGYRVSSYLPLVPTQKIAQVFRNEVPESAPIASS 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125182|ref|XP_002319520.1| predicted protein [Populus trichocarpa] gi|222857896|gb|EEE95443.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 134/154 (87%), Gaps = 1/154 (0%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVT LD  VPP++KQV  QALSAAQ APV AR+VASEV+ +GV GTAS +AK+VY K
Sbjct: 89  VDESVTSLDTHVPPLVKQVSFQALSAAQNAPVAARAVASEVQRSGVKGTASELAKTVYAK 148

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP AKELYSKYEPKAEQ AVSAWRKLN++PLFPQVAQVVVPTAA+CSEKYNQTVVS A+
Sbjct: 149 YEPTAKELYSKYEPKAEQAAVSAWRKLNKLPLFPQVAQVVVPTAAFCSEKYNQTVVSTAE 208

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 154
           KGY+VSSYLPLVPTE+IAKVF   V ES PL S+
Sbjct: 209 KGYRVSSYLPLVPTEKIAKVFGE-VPESTPLISS 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259019463|gb|ACV90044.1| rubber elongation factor [Morus alba]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 135/163 (82%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD SVT+LD  VP  LKQV +QA SAAQ AP VARS+ASEV+ AGV  TASG+AK+V+TK
Sbjct: 90  VDASVTELDRHVPATLKQVSSQAFSAAQKAPEVARSLASEVQRAGVKDTASGIAKTVFTK 149

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEPAAKELY+KYEPKAEQ AV+AWRKLNQ+PLFP+VA VVVPTAAY +EKYNQTV+S A+
Sbjct: 150 YEPAAKELYAKYEPKAEQCAVTAWRKLNQLPLFPKVADVVVPTAAYYTEKYNQTVISTAE 209

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLASAGHEADVVVH 163
           KGYKVSSYLPLVP E+I KVFS    E +PL S   EADV VH
Sbjct: 210 KGYKVSSYLPLVPVEKIVKVFSENGAEFEPLVSKQGEADVAVH 252

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123588|ref|XP_002330158.1| predicted protein [Populus trichocarpa] gi|118483115|gb|ABK93466.1| unknown [Populus trichocarpa] gi|222871614|gb|EEF08745.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 134/154 (87%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVT +D  VPP++KQV ++AL AAQ APV AR+VASEV+ AGV  TAS +AKSVY+K
Sbjct: 89  VDESVTNMDNHVPPLVKQVSSRALLAAQNAPVAARAVASEVQRAGVKETASELAKSVYSK 148

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP AKELYSKYEPKAEQ AVSAWRKLNQ+PLFPQVAQVVVPTAA+CSEKYNQT++S A+
Sbjct: 149 YEPTAKELYSKYEPKAEQAAVSAWRKLNQLPLFPQVAQVVVPTAAFCSEKYNQTILSTAE 208

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 154
           KGYKVS YLPLVPTE+IAKVFS  V ES PL S+
Sbjct: 209 KGYKVSLYLPLVPTEKIAKVFSVEVPESAPLVSS 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102669|ref|XP_002334152.1| predicted protein [Populus trichocarpa] gi|222869868|gb|EEF06999.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/141 (80%), Positives = 127/141 (90%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVT LD  VPP++KQV  QALSAAQ APV AR+VASEV+ +GV GTAS +AK+VY K
Sbjct: 6   VDESVTSLDTHVPPLVKQVSFQALSAAQNAPVAARAVASEVQRSGVKGTASELAKTVYAK 65

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP AKELYSKYEPKAEQ AVSAWRKLN++PLFPQVAQVVVPTAA+CSEKYNQTVVS A+
Sbjct: 66  YEPTAKELYSKYEPKAEQAAVSAWRKLNKLPLFPQVAQVVVPTAAFCSEKYNQTVVSTAE 125

Query: 121 KGYKVSSYLPLVPTERIAKVF 141
           KGY+VSSYLPLVPTE+IAKVF
Sbjct: 126 KGYRVSSYLPLVPTEKIAKVF 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435657|ref|XP_004135611.1| PREDICTED: REF/SRPP-like protein At3g05500-like [Cucumis sativus] gi|449517347|ref|XP_004165707.1| PREDICTED: REF/SRPP-like protein At3g05500-like [Cucumis sativus]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 127/153 (83%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDESVTK+D  VPP +KQ  +QA+ AAQ AP VARSVASEV+ AG+  + SG+ KSVY K
Sbjct: 90  VDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKDSVSGIVKSVYAK 149

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEP+AK+LYSKYEPKAEQ A SAW KLNQ+P+FP VAQ ++PTAAYC+EKYN+TV ++A 
Sbjct: 150 YEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCTEKYNETVRTSAK 209

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLAS 153
           KGYKVSSYLPLVPTERIAKVFS   VE +PL +
Sbjct: 210 KGYKVSSYLPLVPTERIAKVFSKNGVEMEPLVN 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829074|ref|XP_002882419.1| rubber elongation factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297328259|gb|EFH58678.1| rubber elongation factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 136/151 (90%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVYTK
Sbjct: 90  VDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYTK 149

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLFP++AQV VPTAA+CSEKYN TVV AA+
Sbjct: 150 YEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAE 209

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPL 151
           KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct: 210 KGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230002|ref|NP_187201.1| Rubber elongation factor protein [Arabidopsis thaliana] gi|14424101|sp|Q9MA63.1|Y3550_ARATH RecName: Full=REF/SRPP-like protein At3g05500 gi|7596762|gb|AAF64533.1| stress related protein, putative [Arabidopsis thaliana] gi|15450631|gb|AAK96587.1| AT3g05500/F22F7_5 [Arabidopsis thaliana] gi|17380640|gb|AAL36083.1| AT3g05500/F22F7_5 [Arabidopsis thaliana] gi|21537353|gb|AAM61694.1| stress related protein, putative [Arabidopsis thaliana] gi|332640728|gb|AEE74249.1| Rubber elongation factor protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 136/151 (90%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+K
Sbjct: 90  VDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSK 149

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           YEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLFP++AQV VPTAA+CSEKYN TVV AA+
Sbjct: 150 YEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAE 209

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPL 151
           KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct: 210 KGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|372477634|gb|AEX97052.1| rubber elongation factor [Copaifera officinalis]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 127/153 (83%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VDES+T+LD RVP  +K+  +QALSAAQ AP  AR+V SEV+ AGV  TASG+AKSVY K
Sbjct: 89  VDESMTELDRRVPTDVKKASSQALSAAQKAPEAARTVVSEVRRAGVVDTASGLAKSVYGK 148

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
            EP AK+LYSKYEPKAE+ AVSAWRKLN++PLFPQ+A V+VPTAAYC+EKYN+TVVS A+
Sbjct: 149 CEPTAKDLYSKYEPKAEKCAVSAWRKLNKLPLFPQMANVIVPTAAYCTEKYNETVVSTAE 208

Query: 121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPLAS 153
           KGYKVS+YLPLVPTE+IAK+F  G    +P  S
Sbjct: 209 KGYKVSAYLPLVPTEKIAKIFCEGEAAKEPSVS 241

Source: Copaifera officinalis

Species: Copaifera officinalis

Genus: Copaifera

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2079782	246	AT3G05500 [Arabidopsis thalian	0.926	0.613	0.682	3.1e-51
TAIR|locus:2043373	235	AT2G47780 "AT2G47780" [Arabido	0.748	0.519	0.368	1.3e-15
TAIR|locus:2019579	240	AT1G67360 [Arabidopsis thalian	0.773	0.525	0.297	5.5e-07

TAIR|locus:2079782 AT3G05500 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 103/151 (68%), Positives = 125/151 (82%)

Query:     1 VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
             VD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+K
Sbjct:    90 VDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSK 149

Query:    61 YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAD 120
             YEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF            +CSEKYN TVV AA+
Sbjct:   150 YEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAE 209

Query:   121 KGYKVSSYLPLVPTERIAKVFSNGVVESQPL 151
             KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:   210 KGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2043373 AT2G47780 "AT2G47780" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 49/133 (36%), Positives = 66/133 (49%)

Query:     8 LDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKE 67
             +D +V  V   V     S  + A   A +VA+EV+  GV  T   +A+SV  KYEPAA  
Sbjct:   105 VDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEPAA-- 162

Query:    68 LYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAADKGYKVSS 127
                      E YA + WR LNQ+PLF            Y SEKYN  V    D+ Y  + 
Sbjct:   163 ---------EYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAE 213

Query:   128 YLPLVPTERIAKV 140
             YLP++P E+I+ +
Sbjct:   214 YLPMIPIEKISDI 226

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2019579 AT1G67360 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 42/141 (29%), Positives = 56/141 (39%)

Query:     1 VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
             V E   K D   PP+ K+V  QA      A   A+S   E +T G         K+ +  
Sbjct:    81 VGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG--------PKAAFN- 131

Query:    61 YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAD 120
             Y  AA E    Y+      +V  W KLNQ                + S +YN  V    +
Sbjct:   132 Y--AATE----YKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTN 185

Query:   121 KGYKVSSYLPLVPTERIAKVF 141
              GY +  YLPLVP + I K +
Sbjct:   186 MGYSLVGYLPLVPVDDIVKAY 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.124   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       151   0.00097  104 3  11 23  0.39    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  128 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.89u 0.16s 13.05t   Elapsed:  00:00:00
  Total cpu time:  12.89u 0.16s 13.05t   Elapsed:  00:00:00
  Start:  Fri May 10 07:35:11 2013   End:  Fri May 10 07:35:11 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA63	Y3550_ARATH	No assigned EC number	0.7417	0.9263	0.6138	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0016015401 hypothetical protein (241 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam05755	216	pfam05755, REF, Rubber elongation factor protein (	2e-55

>gnl|CDD|218733 pfam05755, REF, Rubber elongation factor protein (REF)

 Score =  173 bits (439), Expect = 2e-55
 Identities = 98/141 (69%), Positives = 109/141 (77%), Gaps = 6/141 (4%)

Query: 1   VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTK 60
           VD+SVT+LD  VPP++KQ  AQA S AQ AP VAR+VASEV+  GV  TA G+AKSVY+K
Sbjct: 78  VDDSVTELDRHVPPLVKQASAQAYSVAQKAPEVARAVASEVRRTGVVETAKGIAKSVYSK 137

Query: 61  YEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAAD 120
           Y          YEP AEQYAVSAWR LNQ+PLFPQVAQVVVPTAAY SEKYN  V   A+
Sbjct: 138 YLYT------NYEPVAEQYAVSAWRSLNQLPLFPQVAQVVVPTAAYWSEKYNDAVRYTAE 191

Query: 121 KGYKVSSYLPLVPTERIAKVF 141
           KGY V+SYLPLVPTERIAKVF
Sbjct: 192 KGYAVASYLPLVPTERIAKVF 212

This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF05755	216	REF: Rubber elongation factor protein (REF); Inter	100.0

>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences

Probab=100.00  E-value=1.5e-63  Score=415.45  Aligned_cols=138  Identities=70%  Similarity=1.032  Sum_probs=136.4

Q ss_pred             CccchhccccCCCccchhhhHHHHHHHhhchHHHHHHHHHHHhhcchhhhhhhhhhhhhccchhHHHHhhhhhhHHHHHH
Q 036810            1 VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYA   80 (163)
Q Consensus         1 Vdesv~~lD~hvPp~vKqvs~QA~~~aq~ap~~Ar~v~sEv~~~Gv~~ta~~~Ak~~y~k~ep~Ak~lY~kYEp~Ae~~a   80 (163)
                      |||++++||+|+||++||+|+||++++|+|||+||++++|+|++|++++++++||++|+|      +||++|||+||+|+
T Consensus        78 VD~~~~~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k------~ly~~yEp~Ae~~a  151 (216)
T PF05755_consen   78 VDESVTKLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAK------DLYTKYEPVAEQYA  151 (216)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHH------HHHHHhhHHHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhhhccchhhhhHHhhHHHHHHhhcCCeeeecccccchHHHHHhhccC
Q 036810           81 VSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNG  144 (163)
Q Consensus        81 v~aW~~LN~lPlfpqVa~~~vPtAA~~sEKYN~~V~~~a~kGY~va~YLPLVP~EkIaKvf~~~  144 (163)
                      +++|++|||||+||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus       152 v~aW~~Ln~lP~~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~  215 (216)
T PF05755_consen  152 VSAWRKLNQLPLFPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE  215 (216)
T ss_pred             HHHHHHhccCCCchhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999999999999875

REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00