Citrus Sinensis ID: 036872
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| 224069302 | 460 | predicted protein [Populus trichocarpa] | 0.961 | 0.819 | 0.748 | 1e-161 | |
| 255580719 | 457 | conserved hypothetical protein [Ricinus | 0.954 | 0.818 | 0.735 | 1e-153 | |
| 296087133 | 451 | unnamed protein product [Vitis vinifera] | 0.951 | 0.827 | 0.719 | 1e-147 | |
| 359488301 | 399 | PREDICTED: uncharacterized protein LOC10 | 0.719 | 0.706 | 0.818 | 1e-127 | |
| 12836895 | 420 | senescence-associated protein [Ipomoea b | 0.892 | 0.833 | 0.673 | 1e-126 | |
| 37783300 | 421 | NTA15 protein [Nicotiana tabacum] | 0.885 | 0.824 | 0.667 | 1e-126 | |
| 449484565 | 418 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.852 | 0.799 | 0.626 | 1e-123 | |
| 449456261 | 435 | PREDICTED: uncharacterized protein LOC10 | 0.895 | 0.806 | 0.605 | 1e-116 | |
| 297841227 | 416 | hypothetical protein ARALYDRAFT_475736 [ | 0.852 | 0.802 | 0.622 | 1e-114 | |
| 356501029 | 440 | PREDICTED: uncharacterized protein LOC10 | 0.913 | 0.813 | 0.589 | 1e-113 |
| >gi|224069302|ref|XP_002302950.1| predicted protein [Populus trichocarpa] gi|118488010|gb|ABK95826.1| unknown [Populus trichocarpa] gi|222844676|gb|EEE82223.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/378 (74%), Positives = 320/378 (84%), Gaps = 1/378 (0%)
Query: 1 MALTASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPK 60
MAL ASKVS+ P V++ +T+ SHGI+ SF+K+ ++KL P QGIELQQLS HL K
Sbjct: 1 MALNASKVSSSPFVTQRKLTSTSHGIICSFSKSFQKNKLHPTHQGIELQQLSSKHLLTAK 60
Query: 61 MSFSNEGLSSLSGKPISFV-SRRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDE 119
++FS E L + GKP+S + SRRSS LC S T E KEC RPY DSSD S QVGE E
Sbjct: 61 LAFSGESLQGIHGKPVSLIISRRSSTLCQSTRTHRTEEKECTRPYSDSSDSSRAQVGEKE 120
Query: 120 DEHPVMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAIL 179
DEH +M GRTIHS LAEAC+FVYNDAKFVNERARNDI+LLSR I RLDARAR+ +AIL
Sbjct: 121 DEHQLMSGRTIHSCHALAEACRFVYNDAKFVNERARNDIILLSRGISRLDARARKGVAIL 180
Query: 180 GSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEAD 239
GS FLKL+ARAREDTEKIDRDVK+KAE LHHIATI+KD+A+++LK AADKHWSDGALEAD
Sbjct: 181 GSGFLKLDARAREDTEKIDRDVKEKAERLHHIATIIKDRAQTKLKTAADKHWSDGALEAD 240
Query: 240 LRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKN 299
LR ADFRAKQRAMEDALMALEF+KNIH++MV KMYKFPLR+E+ SL+ ++G IMLEKN
Sbjct: 241 LRLADFRAKQRAMEDALMALEFVKNIHELMVSKMYKFPLRKEEGSLTANGILGNIMLEKN 300
Query: 300 GKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGK 359
G+TLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLI LDAMDGK
Sbjct: 301 GRTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGK 360
Query: 360 SSVSLLAECSSSPDVNTR 377
SVSLLAECS+SPDVNTR
Sbjct: 361 GSVSLLAECSNSPDVNTR 378
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580719|ref|XP_002531181.1| conserved hypothetical protein [Ricinus communis] gi|223529222|gb|EEF31196.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|296087133|emb|CBI33507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359488301|ref|XP_002276736.2| PREDICTED: uncharacterized protein LOC100251878 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|12836895|gb|AAK08655.1|AF234536_1 senescence-associated protein [Ipomoea batatas] gi|33341118|gb|AAQ15125.1|AF353614_1 senescence-associated protein SPA15 [Ipomoea batatas] | Back alignment and taxonomy information |
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| >gi|37783300|gb|AAP41026.1| NTA15 protein [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|449484565|ref|XP_004156917.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101207516 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449456261|ref|XP_004145868.1| PREDICTED: uncharacterized protein LOC101207516 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297841227|ref|XP_002888495.1| hypothetical protein ARALYDRAFT_475736 [Arabidopsis lyrata subsp. lyrata] gi|297334336|gb|EFH64754.1| hypothetical protein ARALYDRAFT_475736 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356501029|ref|XP_003519331.1| PREDICTED: uncharacterized protein LOC100794223 isoform 1 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| TAIR|locus:2201547 | 417 | AT1G66330 [Arabidopsis thalian | 0.716 | 0.673 | 0.666 | 5.7e-91 |
| TAIR|locus:2201547 AT1G66330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 204/306 (66%), Positives = 229/306 (74%)
Query: 74 KPISFVS-RRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDEDEHPVMPGR-TIH 131
K ++FVS RR S LCF +++ E ++ QV + E E VMP R + +
Sbjct: 55 KTVTFVSSRRCSTLCFVGKSQDTE--------------TNSQVVQKEGEKQVMPRRKSSN 100
Query: 132 SSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAR 191
SSQ+L E +V NDAKFVNERARND VLLSR IMRLDARARQD+AILGS FLKL+ARAR
Sbjct: 101 SSQLLVE---YVSNDAKFVNERARNDFVLLSRGIMRLDARARQDVAILGSGFLKLDARAR 157
Query: 192 EDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRA 251
EDTEKIDRDVK+KAE LHHIATI K+ AES+LK+AADKHWSDGALEADLRRADFRAKQRA
Sbjct: 158 EDTEKIDRDVKRKAERLHHIATIFKNIAESKLKNAADKHWSDGALEADLRRADFRAKQRA 217
Query: 252 MEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVS 311
MEDALMALEF+KNIHDMMV KM + + S+ I LEKNG L FFPGEVS
Sbjct: 218 MEDALMALEFIKNIHDMMVNKMV------DSLVTSETGTTDRISLEKNGIALGFFPGEVS 271
Query: 312 TDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKXXXXXXXXXXXX 371
+DRI+AI+EAY SMASALSEADGIDYTDPEELELLVTTLI LDAMDGK
Sbjct: 272 SDRISAIEEAYKSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGKSSASLLAECSSS 331
Query: 372 PDVNTR 377
PDVNTR
Sbjct: 332 PDVNTR 337
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 392 380 0.00090 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 608 (65 KB)
Total size of DFA: 224 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.45u 0.13s 32.58t Elapsed: 00:00:02
Total cpu time: 32.45u 0.13s 32.58t Elapsed: 00:00:02
Start: Fri May 10 09:49:13 2013 End: Fri May 10 09:49:15 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_LG_II2227 | SubName- Full=Putative uncharacterized protein; (460 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00