Citrus Sinensis ID: 036872


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MALTASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDEDEHPVMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVDHGVL
ccccccccccccccccHHHHHccccEEEEEcccccccccccccccccHHHcccccccccccccccccccccccccEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccEEEEEEccccccccHHHHccccccccccccc
ccccccccccccEEEEEEEEEccccEEEEEcccccccccccccccEEEEEccccccccEEEcccccccccccccccEEEEEcccEEEEcccccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHccccccEEEEEEEcccccccEEEEEcccccccccccc
maltaskvsngpvvsKEIITARSHGIVYSFAKTTVQhklcpaiqgielqqlsdghlsapkmsfsneglsslsgkpisfvsrrssilcfsngtrnaeakecirpygdssdvssmqvgededehpvmpgrtihsSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAAdkhwsdgalEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMykfplrrekislsdpemmgcimlekngktldffpgevsTDRITAIQEAYWSMASALseadgidytdpeELELLVTTLIGldamdgksSVSLLAecssspdvntrvfksripmdvdhgvl
maltaskvsngpvvSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFsngtrnaeakecirpygdssdvSSMQVGEDEDEHPVMPGRTIHSSQVLAEACKFVYNdakfvnerarndiVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAadkhwsdgaleADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRrekislsdpEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAEcssspdvntrvfksripmdvdhgvl
MALTASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDEDEHPVMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKssvsllaecsssPDVNTRVFKSRIPMDVDHGVL
*************VSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQ*********************************SILCFS*******************************************SQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNA************VKQKAECLHHIATILKD*************W****L***L***DFRA**RAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDG**********************************
*************VSKEIITARSHGIV************************SDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSS**************************************************VLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARARE**********Q*AECLHHIATIL***************WSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYK********************LEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVDHGVL
***********PVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFSNGTRNAEAKECIRPY*******************VMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVDHGVL
********SNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFSNGTRNA*AKECI*****************************HSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLR****SLSD**MMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALTASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDEDEHPVMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVDHGVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
224069302460 predicted protein [Populus trichocarpa] 0.961 0.819 0.748 1e-161
255580719457 conserved hypothetical protein [Ricinus 0.954 0.818 0.735 1e-153
296087133451 unnamed protein product [Vitis vinifera] 0.951 0.827 0.719 1e-147
359488301399 PREDICTED: uncharacterized protein LOC10 0.719 0.706 0.818 1e-127
12836895420 senescence-associated protein [Ipomoea b 0.892 0.833 0.673 1e-126
37783300421 NTA15 protein [Nicotiana tabacum] 0.885 0.824 0.667 1e-126
449484565418 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.852 0.799 0.626 1e-123
449456261435 PREDICTED: uncharacterized protein LOC10 0.895 0.806 0.605 1e-116
297841227416 hypothetical protein ARALYDRAFT_475736 [ 0.852 0.802 0.622 1e-114
356501029440 PREDICTED: uncharacterized protein LOC10 0.913 0.813 0.589 1e-113
>gi|224069302|ref|XP_002302950.1| predicted protein [Populus trichocarpa] gi|118488010|gb|ABK95826.1| unknown [Populus trichocarpa] gi|222844676|gb|EEE82223.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/378 (74%), Positives = 320/378 (84%), Gaps = 1/378 (0%)

Query: 1   MALTASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPK 60
           MAL ASKVS+ P V++  +T+ SHGI+ SF+K+  ++KL P  QGIELQQLS  HL   K
Sbjct: 1   MALNASKVSSSPFVTQRKLTSTSHGIICSFSKSFQKNKLHPTHQGIELQQLSSKHLLTAK 60

Query: 61  MSFSNEGLSSLSGKPISFV-SRRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDE 119
           ++FS E L  + GKP+S + SRRSS LC S  T   E KEC RPY DSSD S  QVGE E
Sbjct: 61  LAFSGESLQGIHGKPVSLIISRRSSTLCQSTRTHRTEEKECTRPYSDSSDSSRAQVGEKE 120

Query: 120 DEHPVMPGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAIL 179
           DEH +M GRTIHS   LAEAC+FVYNDAKFVNERARNDI+LLSR I RLDARAR+ +AIL
Sbjct: 121 DEHQLMSGRTIHSCHALAEACRFVYNDAKFVNERARNDIILLSRGISRLDARARKGVAIL 180

Query: 180 GSEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEAD 239
           GS FLKL+ARAREDTEKIDRDVK+KAE LHHIATI+KD+A+++LK AADKHWSDGALEAD
Sbjct: 181 GSGFLKLDARAREDTEKIDRDVKEKAERLHHIATIIKDRAQTKLKTAADKHWSDGALEAD 240

Query: 240 LRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKN 299
           LR ADFRAKQRAMEDALMALEF+KNIH++MV KMYKFPLR+E+ SL+   ++G IMLEKN
Sbjct: 241 LRLADFRAKQRAMEDALMALEFVKNIHELMVSKMYKFPLRKEEGSLTANGILGNIMLEKN 300

Query: 300 GKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGK 359
           G+TLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLI LDAMDGK
Sbjct: 301 GRTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGK 360

Query: 360 SSVSLLAECSSSPDVNTR 377
            SVSLLAECS+SPDVNTR
Sbjct: 361 GSVSLLAECSNSPDVNTR 378




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580719|ref|XP_002531181.1| conserved hypothetical protein [Ricinus communis] gi|223529222|gb|EEF31196.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296087133|emb|CBI33507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488301|ref|XP_002276736.2| PREDICTED: uncharacterized protein LOC100251878 [Vitis vinifera] Back     alignment and taxonomy information
>gi|12836895|gb|AAK08655.1|AF234536_1 senescence-associated protein [Ipomoea batatas] gi|33341118|gb|AAQ15125.1|AF353614_1 senescence-associated protein SPA15 [Ipomoea batatas] Back     alignment and taxonomy information
>gi|37783300|gb|AAP41026.1| NTA15 protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449484565|ref|XP_004156917.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101207516 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456261|ref|XP_004145868.1| PREDICTED: uncharacterized protein LOC101207516 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297841227|ref|XP_002888495.1| hypothetical protein ARALYDRAFT_475736 [Arabidopsis lyrata subsp. lyrata] gi|297334336|gb|EFH64754.1| hypothetical protein ARALYDRAFT_475736 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356501029|ref|XP_003519331.1| PREDICTED: uncharacterized protein LOC100794223 isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2201547417 AT1G66330 [Arabidopsis thalian 0.716 0.673 0.666 5.7e-91
TAIR|locus:2201547 AT1G66330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 204/306 (66%), Positives = 229/306 (74%)

Query:    74 KPISFVS-RRSSILCFSNGTRNAEAKECIRPYGDSSDVSSMQVGEDEDEHPVMPGR-TIH 131
             K ++FVS RR S LCF   +++ E              ++ QV + E E  VMP R + +
Sbjct:    55 KTVTFVSSRRCSTLCFVGKSQDTE--------------TNSQVVQKEGEKQVMPRRKSSN 100

Query:   132 SSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAR 191
             SSQ+L E   +V NDAKFVNERARND VLLSR IMRLDARARQD+AILGS FLKL+ARAR
Sbjct:   101 SSQLLVE---YVSNDAKFVNERARNDFVLLSRGIMRLDARARQDVAILGSGFLKLDARAR 157

Query:   192 EDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRA 251
             EDTEKIDRDVK+KAE LHHIATI K+ AES+LK+AADKHWSDGALEADLRRADFRAKQRA
Sbjct:   158 EDTEKIDRDVKRKAERLHHIATIFKNIAESKLKNAADKHWSDGALEADLRRADFRAKQRA 217

Query:   252 MEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVS 311
             MEDALMALEF+KNIHDMMV KM       + +  S+      I LEKNG  L FFPGEVS
Sbjct:   218 MEDALMALEFIKNIHDMMVNKMV------DSLVTSETGTTDRISLEKNGIALGFFPGEVS 271

Query:   312 TDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKXXXXXXXXXXXX 371
             +DRI+AI+EAY SMASALSEADGIDYTDPEELELLVTTLI LDAMDGK            
Sbjct:   272 SDRISAIEEAYKSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGKSSASLLAECSSS 331

Query:   372 PDVNTR 377
             PDVNTR
Sbjct:   332 PDVNTR 337


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      392       380   0.00090  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  224 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.45u 0.13s 32.58t   Elapsed:  00:00:02
  Total cpu time:  32.45u 0.13s 32.58t   Elapsed:  00:00:02
  Start:  Fri May 10 09:49:13 2013   End:  Fri May 10 09:49:15 2013


GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0010150 "leaf senescence" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0034599 "cellular response to oxidative stress" evidence=IMP
GO:0072593 "reactive oxygen species metabolic process" evidence=IMP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_II2227
SubName- Full=Putative uncharacterized protein; (460 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00