Citrus Sinensis ID: 037064

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQLP
ccHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHcccEEEEcccccccccccHHHHHHccHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccc
ccHHHHHHHHHHHHcccccccccHHHEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccEEEEccHHHccccccEEEEcccccEEEEccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEccc
STKEAFLEKFKKSvskgfdpdidLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVggwnssntsSLQVIaedrgipsywidsekrigpgnkMAYKLMHGElvekenwlpkgqitigvtagastpdKAIEGVLKKVFEIKREEALQLP
STKEAFLEKFkksvskgfdpdidlVKVGianqttmikgeteeiGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVvggwnssntsslqviaedrgipsywidsekrigPGNKMAYKLMHGELVEKENWLPKGQITIgvtagastpdKAIEGVLKKVFEIKREEALQLP
STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQLP
****************GFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILV**************IAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEI*********
*TKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQ**
STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQLP
****AFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREEALQLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q6AVG6459 4-hydroxy-3-methylbut-2-e yes no 0.989 0.403 0.816 6e-87
Q94B35466 4-hydroxy-3-methylbut-2-e yes no 0.994 0.399 0.811 3e-85
B8HWD3405 4-hydroxy-3-methylbut-2-e yes no 0.989 0.456 0.594 6e-64
B0C4N8415 4-hydroxy-3-methylbut-2-e yes no 0.951 0.428 0.589 3e-61
Q5N249398 4-hydroxy-3-methylbut-2-e yes no 0.951 0.447 0.561 7e-61
Q31S64398 4-hydroxy-3-methylbut-2-e yes no 0.951 0.447 0.561 7e-61
Q3M8X6402 4-hydroxy-3-methylbut-2-e yes no 0.973 0.452 0.582 1e-60
P58674402 4-hydroxy-3-methylbut-2-e yes no 0.973 0.452 0.582 2e-60
Q8DK29402 4-hydroxy-3-methylbut-2-e yes no 0.887 0.412 0.626 7e-59
B2IZV5402 4-hydroxy-3-methylbut-2-e yes no 0.973 0.452 0.560 4e-58
>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1 Back     alignment and function desciption
 Score =  319 bits (818), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 151/185 (81%), Positives = 169/185 (91%)

Query: 1   STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV 60
           STKE FLEKFK +VS GFDPD+DLVKVGIANQTTM+KGETEEIGKLVEKTMMR+FGVENV
Sbjct: 273 STKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRRFGVENV 332

Query: 61  NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120
           N+HFI+FNTIC A QERQDA+Y+LV+EK+DLILVVGGWNSSNTS LQ I E  GIPSYWI
Sbjct: 333 NDHFIAFNTICDATQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQEIGELSGIPSYWI 392

Query: 121 DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180
           DSE+RIGPGNK++YKL HGELVEKENWLP+G ITIGVT+GASTPDK +E  L+KVFEIKR
Sbjct: 393 DSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALQKVFEIKR 452

Query: 181 EEALQ 185
           +E LQ
Sbjct: 453 QEVLQ 457
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2
>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1 Back     alignment and function description
>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0C4N8|ISPH_ACAM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q8DK29|ISPH_THEEB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B2IZV5|ISPH_NOSP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
343466165 470 4-hydroxy-3-methylbut-2-enyl diphosphate 0.989 0.393 0.843 1e-87
225428566 465 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.994 0.4 0.827 3e-87
297741414 380 unnamed protein product [Vitis vinifera] 0.994 0.489 0.827 4e-87
306029974 461 1-hydroxy-2-methyl-butenyl 4-diphosphate 0.994 0.403 0.806 7e-87
164605002 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.994 0.402 0.838 1e-86
449438464 463 PREDICTED: LOW QUALITY PROTEIN: 4-hydrox 0.994 0.401 0.822 1e-86
325557690 461 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 0.994 0.403 0.822 1e-86
449506403 468 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.994 0.397 0.822 1e-86
353453158 455 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 0.994 0.408 0.822 1e-86
114329246 459 hydroxymethylbutenyl diphosphate reducta 0.994 0.405 0.822 1e-86
>gi|343466165|gb|AEM42976.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Siraitia grosvenorii] Back     alignment and taxonomy information
 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 171/185 (92%)

Query: 2   TKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVN 61
           TKE F++KFK +VSKGFDPDIDLVKVGIANQTTM+KGETEEIGKLVE+TMMRK GVENVN
Sbjct: 285 TKEEFMKKFKNAVSKGFDPDIDLVKVGIANQTTMLKGETEEIGKLVERTMMRKHGVENVN 344

Query: 62  EHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWID 121
           EHFISFNTIC A QERQDA+YKLVE K+DL+LVVGGWNSSNTS LQ IAEDRGIPSYW+D
Sbjct: 345 EHFISFNTICDATQERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQQIAEDRGIPSYWVD 404

Query: 122 SEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKRE 181
           SE+RIGPGNK+AYKL HGELVEKENWLP+G ITIGVT+GASTPDK +E VL KVF+IKRE
Sbjct: 405 SEQRIGPGNKIAYKLNHGELVEKENWLPRGPITIGVTSGASTPDKVVEDVLIKVFDIKRE 464

Query: 182 EALQL 186
           EALQ 
Sbjct: 465 EALQF 469

Source: Siraitia grosvenorii

Species: Siraitia grosvenorii

Genus: Siraitia

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428566|ref|XP_002284659.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741414|emb|CBI32545.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|306029974|gb|ADM83430.1| 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|449438464|ref|XP_004137008.1| PREDICTED: LOW QUALITY PROTEIN: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|325557690|gb|ADZ29096.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|449506403|ref|XP_004162740.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|353453158|gb|AER00471.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Tanacetum parthenium] Back     alignment and taxonomy information
>gi|114329246|gb|ABI64152.1| hydroxymethylbutenyl diphosphate reductase [Camptotheca acuminata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2116164466 HDR "4-hydroxy-3-methylbut-2-e 0.994 0.399 0.811 4.8e-78
TIGR_CMR|CHY_1925 653 CHY_1925 "hydroxymethylbutenyl 0.491 0.140 0.378 3.5e-14
TIGR_CMR|VC_0685316 VC_0685 "hydroxymethylbutenyl 0.310 0.183 0.474 3.9e-14
UNIPROTKB|Q749Y8282 ispH "4-hydroxy-3-methylbut-2- 0.497 0.329 0.336 4.2e-09
TIGR_CMR|GSU_2604282 GSU_2604 "penicillin tolerance 0.497 0.329 0.336 4.2e-09
TIGR_CMR|CPS_1211309 CPS_1211 "4-hydroxy-3-methylbu 0.299 0.181 0.491 2.1e-08
TIGR_CMR|ECH_0502319 ECH_0502 "hydroxymethylbutenyl 0.486 0.285 0.366 2.7e-08
UNIPROTKB|P62623316 ispH "1-hydroxy-2-methyl-2-(E) 0.491 0.291 0.306 4.3e-08
UNIPROTKB|Q8EBI7318 ispH "4-hydroxy-3-methylbut-2- 0.513 0.301 0.295 4.9e-07
TIGR_CMR|SO_3529318 SO_3529 "penicillin tolerance 0.513 0.301 0.295 4.9e-07
TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 151/186 (81%), Positives = 169/186 (90%)

Query:     1 STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV 60
             STKE F+EKFK ++SKGFDPD DLVKVGIANQTTM+KGETEEIG+L+E TMMRK+GVENV
Sbjct:   280 STKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLLETTMMRKYGVENV 339

Query:    61 NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120
             + HFISFNTIC A QERQDA+Y+LVEEKIDL+LVVGGWNSSNTS LQ I+E RGIPSYWI
Sbjct:   340 SGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWI 399

Query:   121 DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180
             DSEKRIGPGNK+AYKL +GELVEKEN+LPKG ITIGVT+GASTPDK +E  L KVF+IKR
Sbjct:   400 DSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKVVEDALVKVFDIKR 459

Query:   181 EEALQL 186
             EE LQL
Sbjct:   460 EELLQL 465
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS
GO:0046677 "response to antibiotic" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
TIGR_CMR|CHY_1925 CHY_1925 "hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0685 VC_0685 "hydroxymethylbutenyl pyrophosphate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1211 CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0502 ECH_0502 "hydroxymethylbutenyl pyrophosphate reductase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|P62623 ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94B35ISPH_ARATH1, ., 1, 7, ., 1, ., 20.81180.99460.3991yesno
Q6AVG6ISPH_ORYSJ1, ., 1, 7, ., 1, ., 20.81620.98930.4030yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.1.2LOW CONFIDENCE prediction!
3rd Layer1.17.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036436001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (465 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00024531001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (740 aa)
  •• •• 0.990
GSVIVG00025071001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (234 aa)
     •• 0.954
GSVIVG00016085001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)
• •   • 0.927
GSVIVG00019758001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (285 aa)
  •  •• 0.923
GSVIVG00014674001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (371 aa)
  •  •• 0.923
GSVIVG00025000001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (368 aa)
     •• 0.907
GSVIVG00001656001
SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (242 aa)
     •• 0.902
GPPS
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (422 aa)
     •• 0.900
GSVIVG00036188001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence (Chromosome undetermine [...] (341 aa)
     •  0.899
GSVIVG00033429001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (341 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
PLN02821460 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten 1e-124
PRK13371387 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d 1e-102
COG0761294 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos 2e-39
pfam02401280 pfam02401, LYTB, LytB protein 1e-36
TIGR00216280 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2 4e-33
PRK01045298 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho 3e-25
PRK00087 647 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d 3e-22
PRK12360281 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d 2e-18
>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
 Score =  356 bits (916), Expect = e-124
 Identities = 152/186 (81%), Positives = 171/186 (91%)

Query: 1   STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENV 60
            TKE FLEKFK +VSKGFDPD DLVKVGIANQTTM+KGETEEIGKL+EKTMM+K+GVENV
Sbjct: 275 GTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENV 334

Query: 61  NEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWI 120
           N+HF+SFNTIC A QERQDA+YKLVEEK+DL+LVVGGWNSSNTS LQ IAE +GIPSYWI
Sbjct: 335 NDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWI 394

Query: 121 DSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR 180
           DSE+RIGPGN +A+KL HGELVEKENWLP+G +TIGVT+GASTPDK +E VL KVF+IKR
Sbjct: 395 DSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVVEDVLDKVFDIKR 454

Query: 181 EEALQL 186
           EEALQL
Sbjct: 455 EEALQL 460

Length = 460
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217018 pfam02401, LYTB, LytB protein Back     alignment and domain information
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 100.0
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 100.0
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
cd01537 264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 94.75
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 89.59
PF00532 279 Peripla_BP_1: Periplasmic binding proteins and sug 89.46
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 89.45
cd01391 269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 89.09
cd06281 269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 88.93
cd06312 271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 88.43
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 88.37
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 87.84
cd01536 267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 87.71
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 87.62
cd06273 268 PBP1_GntR_like_1 This group includes the ligand-bi 87.5
cd06320 275 PBP1_allose_binding Periplasmic allose-binding dom 87.29
cd06308 270 PBP1_sensor_kinase_like Periplasmic binding domain 87.28
cd06319 277 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b 86.8
PF13407 257 Peripla_BP_4: Periplasmic binding protein domain; 86.73
cd06282 266 PBP1_GntR_like_2 Ligand-binding domain of putative 86.2
PRK05282233 (alpha)-aspartyl dipeptidase; Validated 86.07
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 85.96
PRK14072 416 6-phosphofructokinase; Provisional 85.91
PRK01045 298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 85.53
cd04509 299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 85.38
PRK10014 342 DNA-binding transcriptional repressor MalI; Provis 85.32
cd06310 273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 85.32
cd06342 334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 85.05
cd08191 386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 84.77
PLN02251 568 pyrophosphate-dependent phosphofructokinase 84.18
COG3340224 PepE Peptidase E [Amino acid transport and metabol 83.93
cd06339 336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 83.68
cd06276247 PBP1_FucR_like Ligand-binding domain of a transcri 83.26
cd06349 340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 83.07
cd06331 333 PBP1_AmiC_like Type I periplasmic components of am 82.86
cd06301 272 PBP1_rhizopine_binding_like Periplasmic binding pr 82.82
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 81.94
cd01543 265 PBP1_XylR Ligand-binding domain of DNA transcripti 81.46
cd06286 260 PBP1_CcpB_like Ligand-binding domain of a novel tr 81.17
PRK06555 403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 81.12
cd06367 362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 80.99
cd06318 282 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi 80.75
PF1008797 DUF2325: Uncharacterized protein conserved in bact 80.68
cd02958114 UAS UAS family; UAS is a domain of unknown functio 80.54
cd06335 347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 80.39
PRK10653 295 D-ribose transporter subunit RbsB; Provisional 80.35
TIGR02069250 cyanophycinase cyanophycinase. This model describe 80.17
cd06356 334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 80.04
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-62  Score=446.54  Aligned_cols=186  Identities=82%  Similarity=1.253  Sum_probs=177.8

Q ss_pred             CcHHHHHHHHhhccCCCCCCCCCCCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHH
Q 037064            1 STKEAFLEKFKKSVSKGFDPDIDLVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDA   80 (187)
Q Consensus         1 ~~~~~~~~~~~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a   80 (187)
                      +++++|+++|++++|++|||+++++||++++||||+.++|++|++.|+++|++++||++...+|.+|||||+||++||+|
T Consensus       275 ~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA  354 (460)
T PLN02821        275 GTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDA  354 (460)
T ss_pred             cchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHhhhcCCCEEEEEcCCCChhhHHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeC
Q 037064           81 VYKLVEEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAG  160 (187)
Q Consensus        81 v~~La~~~~D~miVVGG~nSSNT~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAG  160 (187)
                      +.+|+..++|+||||||+|||||+||+|||++.|+|+|||++++||++.+.|.|++.|+|..++++|||.++.+||||||
T Consensus       355 ~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAG  434 (460)
T PLN02821        355 MYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSG  434 (460)
T ss_pred             HHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhccCCCEEEEecC
Confidence            99996458999999999999999999999999999999999999999999999999999999999999767999999999


Q ss_pred             CCCcHHHHHHHHHHHHhccHhhhhcC
Q 037064          161 ASTPDKAIEGVLKKVFEIKREEALQL  186 (187)
Q Consensus       161 ASTP~~lI~eVi~~l~~~~~~~~~~~  186 (187)
                      ||||+|+|++|+.+|.+++..+++|+
T Consensus       435 ASTPd~lIeeVi~~l~~~~~~~~~~~  460 (460)
T PLN02821        435 ASTPDKVVEDVLDKVFDIKREEALQL  460 (460)
T ss_pred             CCCCHHHHHHHHHHHHHhhccccccC
Confidence            99999999999999999877776664

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems Back     alignment and domain information
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PRK05282 (alpha)-aspartyl dipeptidase; Validated Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>COG3340 PepE Peptidase E [Amino acid transport and metabolism] Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd02958 UAS UAS family; UAS is a domain of unknown function Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK10653 D-ribose transporter subunit RbsB; Provisional Back     alignment and domain information
>TIGR02069 cyanophycinase cyanophycinase Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3dnf_A297 Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph 2e-10
3t0f_A328 Isph:hmbpp (Substrate) Structure Of The E126d Mutan 5e-10
3ke8_A326 Crystal Structure Of Isph:hmbpp-Complex Length = 32 5e-10
4eb3_A327 Crystal Structure Of Isph In Complex With Iso-hmbpp 5e-10
3urk_A324 Isph In Complex With Propynyl Diphosphate (1061) Le 5e-10
3szu_A328 Isph:hmbpp Complex Structure Of E126q Mutant Length 5e-10
3zgl_A332 Crystal Structures Of Escherichia Coli Isph In Comp 5e-10
4h4c_A323 Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny 5e-10
3f7t_A328 Structure Of Active Isph Shows A Novel Fold With A 5e-10
3t0g_A328 Isph:hmbpp (Substrate) Structure Of The T167c Mutan 9e-10
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 25/144 (17%)
Query: 41  EEIGKLVEKTMMRKFGVENVNEHFI------SFNTICHAAQERQDAVYKLVEEKIDLILV 94
           E +G + + T   +F  E V E  +        NTIC+A   RQ++V KL  E +D++++
Sbjct: 157 ERVGIVAQTTQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPE-VDVMII 215
Query: 95  VGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQIT 154
           +GG NS NT  L  I+++    +Y I++ + + P                  W  +G   
Sbjct: 216 IGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKR 257
Query: 155 IGVTAGASTPDKAIEGVLKKVFEI 178
           +G++AGASTPD  IE V  ++ EI
Sbjct: 258 VGISAGASTPDWIIEQVKSRIQEI 281
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328 Back     alignment and structure
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326 Back     alignment and structure
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327 Back     alignment and structure
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324 Back     alignment and structure
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328 Back     alignment and structure
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332 Back     alignment and structure
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323 Back     alignment and structure
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328 Back     alignment and structure
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 2e-29
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 2e-21
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297 Back     alignment and structure
 Score =  109 bits (274), Expect = 2e-29
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 29/157 (18%)

Query: 26  KVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLV 85
           +VGI  QTT  +   +E+   V + +          +     NTIC+A   RQ++V KL 
Sbjct: 158 RVGIVAQTTQNEEFFKEV---VGE-IALWV------KEVKVINTICNATSLRQESVKKLA 207

Query: 86  EEKIDLILVVGGWNSSNTSSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKE 145
            E +D+++++GG NS NT  L  I+++    +Y I++ + +                 + 
Sbjct: 208 PE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEEL-----------------QP 249

Query: 146 NWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKREE 182
            W  +G   +G++AGASTPD  IE V  ++ EI   +
Sbjct: 250 EWF-RGVKRVGISAGASTPDWIIEQVKSRIQEICEGQ 285
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 100.0
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 100.0
3dnf_A 297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 92.91
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 92.79
3dbi_A 338 Sugar-binding transcriptional regulator, LACI FAM; 91.94
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 91.27
3huu_A 305 Transcription regulator like protein; PSI-II, NYSG 90.5
3k9c_A 289 Transcriptional regulator, LACI family protein; PS 90.36
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 89.74
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 89.56
3k4h_A 292 Putative transcriptional regulator; structural gen 88.7
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 88.67
3qk7_A 294 Transcriptional regulators; structural genomics, N 88.61
3m9w_A 313 D-xylose-binding periplasmic protein; xylose bindi 88.19
3ksm_A 276 ABC-type sugar transport system, periplasmic COMP; 87.79
3tb6_A 298 Arabinose metabolism transcriptional repressor; tr 86.97
3o74_A 272 Fructose transport system repressor FRUR; dual tra 86.59
2h3h_A 313 Sugar ABC transporter, periplasmic sugar-binding p 86.29
3rot_A 297 ABC sugar transporter, periplasmic sugar binding; 86.18
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 85.84
4eyg_A 368 Twin-arginine translocation pathway signal; PSI-bi 85.33
3egc_A 291 Putative ribose operon repressor; structural genom 85.02
8abp_A 306 L-arabinose-binding protein; binding proteins; HET 85.01
3td9_A 366 Branched chain amino acid ABC transporter, peripl 84.96
2iks_A 293 DNA-binding transcriptional dual regulator; escher 84.9
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 84.83
3h75_A 350 Periplasmic sugar-binding domain protein; protein 83.55
3i45_A 387 Twin-arginine translocation pathway signal protei; 83.16
3brq_A 296 HTH-type transcriptional regulator ASCG; transcrip 83.14
3g1w_A 305 Sugar ABC transporter; sugar-binding protein, baci 82.65
3szu_A 328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 82.42
3hut_A 358 Putative branched-chain amino acid ABC transporter 82.03
2rgy_A 290 Transcriptional regulator, LACI family; 11011J, NY 81.42
3d8u_A 275 PURR transcriptional regulator; APC91343.1, vibrio 81.4
3gv0_A 288 Transcriptional regulator, LACI family; transcript 80.73
3hcw_A 295 Maltose operon transcriptional repressor; RNA-bind 80.7
3e3m_A 355 Transcriptional regulator, LACI family; structural 80.15
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 80.02
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
Probab=100.00  E-value=1.8e-49  Score=347.87  Aligned_cols=128  Identities=34%  Similarity=0.534  Sum_probs=119.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhh
Q 037064           24 LVKVGIANQTTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNT  103 (187)
Q Consensus        24 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT  103 (187)
                      ++|+++++||||+.++|.+|++.|+++||          +++++|||||||++||+|+++|| +++|+||||||+|||||
T Consensus       156 ~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT  224 (297)
T 3dnf_A          156 HERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKVINTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNT  224 (297)
T ss_dssp             CSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEEECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHH
T ss_pred             CCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCCCCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchh
Confidence            47999999999999999999999988543          46689999999999999999999 58999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEeCCCCCCCCCCcchhhhhchhhhhhhccccCCCcEEEEeeCCCCcHHHHHHHHHHHHhccH
Q 037064          104 SSLQVIAEDRGIPSYWIDSEKRIGPGNKMAYKLMHGELVEKENWLPKGQITIGVTAGASTPDKAIEGVLKKVFEIKR  180 (187)
Q Consensus       104 ~rL~eia~~~g~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~~~~IGITAGASTP~~lI~eVi~~l~~~~~  180 (187)
                      +||+|||++.|+++|||++++||++                 +|| .++.+||||||||||+|||++|+++|.++..
T Consensus       225 ~rL~eia~~~~~~ty~Ie~~~el~~-----------------~wl-~~~~~VGITAGASTP~~li~eVi~~l~~~~~  283 (297)
T 3dnf_A          225 RRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKRVGISAGASTPDWIIEQVKSRIQEICE  283 (297)
T ss_dssp             HHHHHHHHHHCSSEEEESSGGGCCG-----------------GGG-TTCSEEEEEECTTCCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhcCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999997                 999 6999999999999999999999999998743
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} Back     alignment and structure
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} Back     alignment and structure
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1jyea_ 271 Lac-repressor (lacR) core (C-terminal domain) {Esc 85.54
d1usga_ 346 Leucine-binding protein {Escherichia coli [TaxId: 83.19
d3erja1116 Hypothetical protein AF2095 {Archaeoglobus fulgidu 83.14
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=85.54  E-value=5.5  Score=29.85  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             CCCChHHHHHHHHHHHHHHhhhcccccccccccccchhcHHHHHHHHHHHHhhhcCCCEEEEEcCCCChhhHHHHHHHHH
Q 037064           33 TTMIKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICHAAQERQDAVYKLVEEKIDLILVVGGWNSSNTSSLQVIAED  112 (187)
Q Consensus        33 TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~av~~La~~~~D~miVVGG~nSSNT~rL~eia~~  112 (187)
                      +.+...-|.++++.+++...+ .|     -++.++.+==.....-++.++.|..+++|.+||.+... .+ ..+.+-+.+
T Consensus         8 ~~l~~~~~~~i~~~i~~~a~~-~G-----y~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~-~~-~~~~~~~~~   79 (271)
T d1jyea_           8 SSLALHAPSQIVAAILSRADQ-LG-----ASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLD-DQ-DAIAVEAAC   79 (271)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHH-TT-----CEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC-HH-HHHHHHHHT
T ss_pred             CCCCChHHHHHHHHHHHHHHH-cC-----CEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccC-ch-hHHHHHHHh
Confidence            445666677888888764222 22     12222211001223444667777767899999876433 23 455555667


Q ss_pred             hCCCeEEeCCCCCCCCCCcchhhhhc-hhhhhhhccccCCCcEEEEeeCCCCcHHHH
Q 037064          113 RGIPSYWIDSEKRIGPGNKMAYKLMH-GELVEKENWLPKGQITIGVTAGASTPDKAI  168 (187)
Q Consensus       113 ~g~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~wl~~~~~~IGITAGASTP~~lI  168 (187)
                      .++|...++...+..- ..+...... +... ....+..|.++||+-+|-....+..
T Consensus        80 ~~iPvV~~d~~~~~~~-~~V~~D~~~~~~~~-~~~L~~~G~~~i~~i~~~~~~~~~~  134 (271)
T d1jyea_          80 TNVPALFLDVSDQTPI-NSIIFSHEDGTRLG-VEHLVALGHQQIALLAGPLSSVSAR  134 (271)
T ss_dssp             TTSCEEESSSCTTSSS-CEEEECHHHHHHHH-HHHHHHHTCCSEEEEECCTTSHHHH
T ss_pred             cCCCeeeeeccccccC-Cccccchhhccccc-eeeeeccccccccccccccccchHH
Confidence            8899999987654321 112111111 1221 1112224788999998765544433
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure