Citrus Sinensis ID: 037105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCPLPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdekwklskkdgscssshasssnklpftrsfstkstsskspllqkssstkcplprsysqkgssisRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS
Flexible Loop (DISEMBL)
mdekwklskkdgscssshasssnklpftrsfstkstsskspllqkssstkcplprsysqkgssisrkcRGLAKEQKARFYIMRRCVAMLVCWHKHGDS
Low Complexity Region (SEG)
MDEKWklskkdgscssshasssnkLpftrsfstkstsskspllqkssstkCPLPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS
Disordered region (IsUnstruct)
*************************************************************************EQKARFYIMRRCVAMLVCWHK****
Disordered Region (DISOPRED)
**EKWKL****************************************************************AKEQKARFYIMRRCVAMLVCWHKH***
Disordered Region (DISEMBL)
***********************************************************************AKEQKARFYIMRRCVAMLVCWHKHGDS
Disordered Region (DISPRO)
**************************************************************SISRKCRGLAKEQKARFYIMRRCVAMLVCWHKH***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCPLPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
224059466	91	predicted protein [Populus trichocarpa]	0.887	0.956	0.676	2e-23
357472831	102	DVL9 [Medicago truncatula] gi|355507755|	0.959	0.921	0.619	4e-20
30697242	144	protein rotundifolia like 5 [Arabidopsis	0.775	0.527	0.604	5e-20
297793509	140	predicted protein [Arabidopsis lyrata su	0.948	0.664	0.435	2e-18
449455090	106	PREDICTED: uncharacterized protein LOC10	0.959	0.886	0.663	1e-16
356542409	105	PREDICTED: uncharacterized protein LOC10	1.0	0.933	0.590	2e-16
356550287	98	PREDICTED: uncharacterized protein LOC10	0.897	0.897	0.564	4e-16
357454211	86	hypothetical protein MTR_2g097570 [Medic	0.5	0.569	0.82	2e-15
224106435	91	predicted protein [Populus trichocarpa]	0.887	0.956	0.666	2e-15
255559040	103	conserved hypothetical protein [Ricinus	1.0	0.951	0.640	3e-13

>gi|224059466|ref|XP_002299860.1| predicted protein [Populus trichocarpa] gi|222847118|gb|EEE84665.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 77/102 (75%), Gaps = 15/102 (14%)

Query: 1  MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQ----KSSSTKCPLPRS 56
          MDEKWKLSKK+GS S + + S+            S+SSK+PLL+    KSSS KCPLPRS
Sbjct: 1  MDEKWKLSKKEGSSSFTRSFSTK-----------SSSSKAPLLRTSSLKSSSPKCPLPRS 49

Query: 57 YSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
          +SQK SSIS KC  LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 50 FSQKNSSISHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472831|ref|XP_003606700.1| DVL9 [Medicago truncatula] gi|355507755|gb|AES88897.1| DVL9 [Medicago truncatula]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 73/105 (69%), Gaps = 11/105 (10%)

Query: 1   MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCPLP------ 54
           MDEKWKLSKK+    SS+ SS+    F+RS ST+ +SS SPLL KS S K          
Sbjct: 1   MDEKWKLSKKE---KSSNTSSTKSSLFSRSCSTRGSSSNSPLLLKSFSQKSSSTSNNSGN 57

Query: 55  --RSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGD 97
             RSYSQK  SI +KC  +AKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 58  LSRSYSQKNPSIGKKCTNIAKEQKARFYIMRRCVAMLVCWHKHGD 102

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697242|ref|NP_200759.2| protein rotundifolia like 5 [Arabidopsis thaliana] gi|21553697|gb|AAM62790.1| unknown [Arabidopsis thaliana] gi|42822069|tpg|DAA02289.1| TPA_exp: DVL18 [Arabidopsis thaliana] gi|88900382|gb|ABD57503.1| At5g59510 [Arabidopsis thaliana] gi|332009816|gb|AED97199.1| protein rotundifolia like 5 [Arabidopsis thaliana]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 62/86 (72%), Gaps = 10/86 (11%)

Query: 21  SSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCP----------LPRSYSQKGSSISRKCRG 70
           SS++  F RSFS K TSSKSP L +S STKCP          + RS SQKG+S++RKCR 
Sbjct: 56  SSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRN 115

Query: 71  LAKEQKARFYIMRRCVAMLVCWHKHG 96
           +AKE K+RFYIM+RCV MLVCWHKH 
Sbjct: 116 MAKEHKSRFYIMKRCVLMLVCWHKHA 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793509|ref|XP_002864639.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310474|gb|EFH40898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 73/140 (52%), Gaps = 47/140 (33%)

Query: 2   DEK-WKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTK---------- 50
           DEK WK+SKKD    ++H SS  K  FTRSFSTK TSS  P+  +S STK          
Sbjct: 3   DEKLWKVSKKDSIFETTHFSS--KPVFTRSFSTKPTSSSKPVFIRSFSTKPTSYSSSEPI 60

Query: 51  ----------------------------------CPLPRSYSQKGSSISRKCRGLAKEQK 76
                                             C + RS SQKG+S++RKCR +AKE K
Sbjct: 61  FRRSFSAKPAPSKSLFLSRSSSTKCQADTSSASKCSISRSLSQKGASVTRKCRNMAKEHK 120

Query: 77  ARFYIMRRCVAMLVCWHKHG 96
           +RFYIM+RCV MLVCWHKH 
Sbjct: 121 SRFYIMKRCVLMLVCWHKHA 140

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455090|ref|XP_004145286.1| PREDICTED: uncharacterized protein LOC101216897 [Cucumis sativus] gi|449472053|ref|XP_004153482.1| PREDICTED: uncharacterized protein LOC101207628 [Cucumis sativus] gi|449508500|ref|XP_004163329.1| PREDICTED: uncharacterized protein LOC101226456 [Cucumis sativus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 76/110 (69%), Gaps = 16/110 (14%)

Query: 1   MDEKWKLSKKDGSCSSSHASSSN-KLPFTRSFSTKSTSSKSPLLQKSSSTKCP------- 52
           MDEKW LSKK+GS SS H SS+N K  F RS ST    SKSPLL+ SS    P       
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAKSSFLRSGST----SKSPLLRCSSQKSIPSSNSKNP 56

Query: 53  --LPRSYSQKGSS--ISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             LPRSYSQK SS  I RK   LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 57  HDLPRSYSQKSSSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542409|ref|XP_003539659.1| PREDICTED: uncharacterized protein LOC100805059 [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 7/105 (6%)

Query: 1   MDEKWKLSKKD-GSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCP------L 53
           MDEKWK+SKK+ GS +SS  SS      +   S+ S+SS SPLL +S S K        +
Sbjct: 1   MDEKWKVSKKEAGSSTSSSKSSLFSRSCSTRGSSSSSSSNSPLLIRSLSQKSSSTSKTTI 60

Query: 54  PRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
           PRS+SQK  SI +KC  +AKE KARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  PRSFSQKNPSIGKKCTSIAKEHKARFYIMRRCVAMLVCWHKHGDS 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550287|ref|XP_003543519.1| PREDICTED: uncharacterized protein LOC100790962 [Glycine max]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 66/108 (61%), Gaps = 20/108 (18%)

Query: 1  MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTS-SKSPLLQKSSSTKCPL------ 53
          MDEK K S K  + SSS          TRS  ++STS S SPLL+  S            
Sbjct: 1  MDEKRKSSSKKDTGSSS----------TRSLFSRSTSTSNSPLLRSLSQKSSSSSSKCNN 50

Query: 54 ---PRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             PRS+SQK  SI RKC  LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 51 NNLPRSFSQKNPSIGRKCTKLAKEQKARFYIMRRCVAMLVCWHKHGDS 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454211|ref|XP_003597386.1| hypothetical protein MTR_2g097570 [Medicago truncatula] gi|355486434|gb|AES67637.1| hypothetical protein MTR_2g097570 [Medicago truncatula]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 43/50 (86%), Gaps = 1/50 (2%)

Query: 50 KCPLPRSYSQKG-SSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
          KC L RS+SQK  SSI RKC  LAKEQKARFYIMRRCVAMLVCWHKHGD+
Sbjct: 37 KCNLQRSFSQKNPSSIGRKCTNLAKEQKARFYIMRRCVAMLVCWHKHGDN 86

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106435|ref|XP_002314165.1| predicted protein [Populus trichocarpa] gi|222850573|gb|EEE88120.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 75/102 (73%), Gaps = 15/102 (14%)

Query: 1  MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQ----KSSSTKCPLPRS 56
          M EKWKLSKK+GS S + + S+            S+SSK+PLL+    K SS KCPLPRS
Sbjct: 1  MAEKWKLSKKEGSSSFTRSFSTK-----------SSSSKAPLLRSSSLKISSPKCPLPRS 49

Query: 57 YSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
           SQK SSISRKC  LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 50 CSQKSSSISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559040|ref|XP_002520543.1| conserved hypothetical protein [Ricinus communis] gi|223540385|gb|EEF41956.1| conserved hypothetical protein [Ricinus communis]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 73/103 (70%), Gaps = 5/103 (4%)

Query: 1   MDEKWKLSKKDGSCS-----SSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCPLPR 55
           MDEKWK SKK+GS S     S+ +SSS       S    S+S  S     +++ KCPLPR
Sbjct: 1   MDEKWKPSKKEGSSSFVRSFSTKSSSSKSPLLRSSSLKISSSPSSSSSSSNNNNKCPLPR 60

Query: 56  SYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
           SYSQK SSISRKC  LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  SYSQKSSSISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:504955897	115	RTFL2 "AT2G29125" [Arabidopsis	0.448	0.382	0.795	8.4e-16
TAIR|locus:2148388	144	RTFL5 "AT5G59510" [Arabidopsis	0.489	0.333	0.693	2.6e-15
TAIR|locus:2024967	107	RTFL3 "AT1G07490" [Arabidopsis	0.459	0.420	0.702	2.2e-11
TAIR|locus:4010713816	144	RTFL4 "AT3G46613" [Arabidopsis	0.438	0.298	0.627	3.5e-11
TAIR|locus:505006308	87	RTFL8 "AT2G39705" [Arabidopsis	0.367	0.413	0.621	4.2e-10
TAIR|locus:4010713749	48	RTFL10 "AT3G14362" [Arabidopsi	0.448	0.916	0.533	4.7e-09
TAIR|locus:4010713835	79	RTFL7 "AT3G55515" [Arabidopsis	0.448	0.556	0.586	4.7e-09
TAIR|locus:1006230132	53	ROT4 "AT2G36985" [Arabidopsis	0.316	0.584	0.580	1.8e-07
TAIR|locus:4010713883	55	RTFL12 "AT4G13395" [Arabidopsi	0.459	0.818	0.456	3.8e-07
TAIR|locus:4010713928	62	RTFL6 "AT4G35783" [Arabidopsis	0.346	0.548	0.5	3.8e-07

TAIR|locus:504955897 RTFL2 "AT2G29125" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query:    55 RSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             RS S   SSI++K   LAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct:    72 RSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:2148388 RTFL5 "AT5G59510" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 34/49 (69%), Positives = 41/49 (83%)

Query:    51 CPLPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHG-DS 98
             C + RS SQKG+S++RKCR +AKE K+RFYIM+RCV MLVCWHKH  DS
Sbjct:    96 CSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHACDS 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2024967 RTFL3 "AT1G07490" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query:    53 LPRSYSQKGS-SISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             + RS S+K   SI++K   LAKEQK RFYIMRRCVAMLVCWHKH DS
Sbjct:    62 ISRSSSKKEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH-DS 107

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:4010713816 RTFL4 "AT3G46613" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query:    53 LPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKH 95
             L R  S+KG+S++ KC  +AKE K+RFYI++RCV MLVCWHKH
Sbjct:   101 LSRILSKKGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:505006308 RTFL8 "AT2G39705" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query:    63 SISRKCRGLAKEQKARFYIMRRCVAMLVCWH-KHGDS 98
             + +RKC  L KEQ+ARFYIMRRCV ML+CW   + DS
Sbjct:    51 AFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSDS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0016925 "protein sumoylation" evidence=RCA

TAIR|locus:4010713749 RTFL10 "AT3G14362" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query:    53 LPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGD 97
             L R ++ KG + + KC  L KEQ+AR YI+RRC  ML CW+ HGD
Sbjct:     4 LKRKFN-KGHAFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:4010713835 RTFL7 "AT3G55515" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query:    55 RSYSQK-GS-SISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             RS  QK G    +RKC  L KEQ+ARFYIMRRCV ML+CW  H ++
Sbjct:    29 RSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNNN 74

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:1006230132 ROT4 "AT2G36985" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query:    63 SISRKCRGLAKEQKARFYIMRRCVAMLVCWH 93
             +  +KC  + K+Q+A+FYI+RRC+AMLVCWH
Sbjct:    14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

GO:0003674 "molecular_function" evidence=ND

GO:0048367 "shoot system development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

TAIR|locus:4010713883 RTFL12 "AT4G13395" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query:    53 LPRSYSQKGSSISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             LP   ++K +    +C  +AK+Q+ R YI+RRCV+ML+CWH H  S
Sbjct:    10 LPTKPNRK-TRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSIS 54

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

TAIR|locus:4010713928 RTFL6 "AT4G35783" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 17/34 (50%), Positives = 27/34 (79%)

Query:    65 SRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGDS 98
             ++ C  + KE+++RFYI RRC+ ML+CWHK+ +S
Sbjct:    29 NKGCLAMVKERRSRFYIARRCILMLLCWHKYANS 62

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0048367 "shoot system development" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011588 hypothetical protein (91 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam08137	19	pfam08137, DVL, DVL family	3e-08

>gnl|CDD|191945 pfam08137, DVL, DVL family

 Score = 44.9 bits (107), Expect = 3e-08
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 73 KEQKARFYIMRRCVAMLVC 91
          KEQ+AR YI+RRCV ML+C
Sbjct: 1  KEQRARLYIIRRCVVMLLC 19

This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and overexpression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the overexpression phenotypes suggest that these polypeptides may have a role in plant development. Length = 19

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF08137	19	DVL: DVL family; InterPro: IPR012552 This family c	99.56

>PF08137 DVL: DVL family; InterPro: IPR012552 This family consists of the DVL family of proteins

Probab=99.56  E-value=5.8e-16  Score=82.37  Aligned_cols=19  Identities=74%  Similarity=1.429  Sum_probs=18.5

Q ss_pred             HhhhhhehhhhHHHHhhhh
Q 037105           73 KEQKARFYIMRRCVAMLVC   91 (98)
Q Consensus        73 KeQRaRlYIiRRCv~MLlC   91 (98)
                      ||||||||||||||+||||
T Consensus         1 keqr~r~YIirrCv~mLlc   19 (19)
T PF08137_consen    1 KEQRARLYIIRRCVVMLLC   19 (19)
T ss_pred             CCcceEEEeHHHhHHHhcC
Confidence            7999999999999999998

In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and over expression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the over expression phenotypes suggest that these polypeptides may have a role in plant development [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00