Citrus Sinensis ID: 037124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccHHHHHHEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHEEEHEHEEEHHHHcccccccc
Coil and Loop (DISEMBL)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH
Flexible Loop (DISEMBL)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVkkrfkisth
Low Complexity Region (SEG)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQvlgnakaalaavvlvlIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH
Disordered region (IsUnstruct)
**LLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF*****
Disordered Region (DISOPRED)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK**********
Disordered Region (DISEMBL)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH
Disordered Region (DISPRO)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR******
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLLVYMALMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9LDH3	361	Probable sugar phosphate/	yes	no	0.972	0.296	0.625	4e-32
Q6DBP3	309	Probable sugar phosphate/	no	no	0.963	0.343	0.529	8e-22
Q5XF09	308	Probable sugar phosphate/	no	no	0.963	0.344	0.521	1e-21
Q9FYE5	309	Probable sugar phosphate/	no	no	0.963	0.343	0.445	1e-19
Q9SS40	355	Probable sugar phosphate/	no	no	0.963	0.298	0.436	4e-19

>sp|Q9LDH3|PT112_ARATH Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 85/120 (70%), Gaps = 13/120 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG               I++LL GNAT+AYLV LT F 
Sbjct: 238 MNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFL 297

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGN KAA+AA V VLIF+NPVTVMG+  F VT M VVLYS+ +KR K+
Sbjct: 298 VTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKL 357

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP3|PT505_ARATH Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 78/119 (65%), Gaps = 13/119 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIE----GI---------FIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA +A  + LP TL +E    GI          IV+ LL N+ +AYLV LT F 
Sbjct: 190 MNLLLYMAPIAVVLLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYLVNLTNFL 249

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
           V  HT  LTLQVLGNAK A+A VV +LIFKNPV+V GM  +++T   V+LYS+ KKR K
Sbjct: 250 VTNHTSALTLQVLGNAKGAVAVVVSILIFKNPVSVTGMLGYSLTVCGVILYSEAKKRNK 308

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XF09|PT311_ARATH Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 13/119 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIE----GI---------FIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA +A    LP TL +E    GI          IV+ LL N+ +AY V LT F 
Sbjct: 190 MNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYFVNLTNFL 249

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
           V KHT  LTLQVLGNAK A+A VV +LIF+NPV+V GM  +++T   V+LYS+ KKR K
Sbjct: 250 VTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVCGVILYSEAKKRSK 308

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYE5|PT504_ARATH Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 13/119 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEGI-------------FIVYLLLGNATIAYLVILTKFF 47
           MNL++YM+ +A    LP TL++E               ++  LLL N+ +AY   L  F 
Sbjct: 191 MNLMLYMSPIAVIALLPVTLFMEPDVISVTLTLAKQHQYMWILLLVNSVMAYSANLLNFL 250

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
           V KHT  LTLQVLGNAK A+A V+ +LIF+NPVTVMG+  +++T + VV Y + K+RF+
Sbjct: 251 VTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTVMGIGGYSITVLGVVAYGETKRRFR 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS40|PT310_ARATH Probable sugar phosphate/phosphate translocator At3g10290 OS=Arabidopsis thaliana GN=At3g10290 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 13/119 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIE-GIFIVYLLLG------------NATIAYLVILTKFF 47
           MNL++YM+ +A    LP T+++E  +  V L LG            N+ +AY   L  F 
Sbjct: 237 MNLMLYMSPIAVIALLPVTIFMEPDVMSVTLTLGRQHKYMYILLLVNSVMAYSANLLNFL 296

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
           V KHT  LTLQVLGNAK A+A V+ +L+F+NPVTVMG+  +++T + VV Y + K+RF+
Sbjct: 297 VTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVMGIGGYSITVLGVVAYGETKRRFR 355

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
224074741	361	predicted protein [Populus trichocarpa]	1.0	0.304	0.666	2e-34
255537165	360	Triose phosphate/phosphate translocator,	1.0	0.305	0.691	1e-30
297849622	358	hypothetical protein ARALYDRAFT_471399 [	0.972	0.298	0.625	2e-30
15221371	361	Nucleotide-sugar transporter family prot	0.972	0.296	0.625	2e-30
225426684	352	PREDICTED: probable sugar phosphate/phos	1.0	0.312	0.682	2e-30
449460451	358	PREDICTED: probable sugar phosphate/phos	1.0	0.307	0.682	4e-30
356514182	354	PREDICTED: probable sugar phosphate/phos	1.0	0.310	0.666	2e-29
356563286	355	PREDICTED: probable sugar phosphate/phos	1.0	0.309	0.666	2e-29
224054031	361	predicted protein [Populus trichocarpa]	1.0	0.304	0.642	5e-29
388512237	354	unknown [Medicago truncatula]	1.0	0.310	0.658	1e-28

>gi|224074741|ref|XP_002304449.1| predicted protein [Populus trichocarpa] gi|222841881|gb|EEE79428.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 92/123 (74%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG              FIV+LL GNAT+AYLV LT F 
Sbjct: 239 MNLLLYMAPMAALILLPFTLYIEGNVAAITIEKASGDPFIVFLLAGNATVAYLVNLTNFL 298

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V +HT  LTLQVLGNAKAA+AAV+ VLIF+NPVTVMGM  FAVT M VVLYS+ KKR K+
Sbjct: 299 VTRHTSALTLQVLGNAKAAVAAVISVLIFRNPVTVMGMAGFAVTIMGVVLYSEAKKRSKV 358

Query: 108 STH 110
           +TH
Sbjct: 359 TTH 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537165|ref|XP_002509649.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] gi|223549548|gb|EEF51036.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 94/123 (76%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG              FIV+LL+GNAT+AYLV LT F 
Sbjct: 238 MNLLLYMAPMAALILLPFTLYIEGNVAANTIEKAKGDPFIVFLLIGNATVAYLVNLTNFL 297

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGMT FAVT M VVLYS+ KKR K+
Sbjct: 298 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKV 357

Query: 108 STH 110
           +TH
Sbjct: 358 TTH 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849622|ref|XP_002892692.1| hypothetical protein ARALYDRAFT_471399 [Arabidopsis lyrata subsp. lyrata] gi|297338534|gb|EFH68951.1| hypothetical protein ARALYDRAFT_471399 [Arabidopsis lyrata subsp. lyrata]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 85/120 (70%), Gaps = 13/120 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG               I++LL GNAT+AYLV LT F 
Sbjct: 235 MNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFL 294

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGN KAA+AA V VLIF+NPVTVMG+  F VT M VVLYS+ +KR K+
Sbjct: 295 VTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKL 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221371|ref|NP_172712.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|75173828|sp|Q9LDH3.1|PT112_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At1g12500 gi|8778643|gb|AAF79651.1|AC025416_25 F5O11.25 [Arabidopsis thaliana] gi|9502394|gb|AAF88101.1|AC025417_29 T12C24.5 [Arabidopsis thaliana] gi|26449593|dbj|BAC41922.1| unknown protein [Arabidopsis thaliana] gi|332190769|gb|AEE28890.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 85/120 (70%), Gaps = 13/120 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG               I++LL GNAT+AYLV LT F 
Sbjct: 238 MNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFL 297

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGN KAA+AA V VLIF+NPVTVMG+  F VT M VVLYS+ +KR K+
Sbjct: 298 VTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKL 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426684|ref|XP_002281623.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 1 [Vitis vinifera] gi|359474280|ref|XP_003631429.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 2 [Vitis vinifera] gi|297742646|emb|CBI34795.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 94/123 (76%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG              FI++LL+GNAT+AYLV LT F 
Sbjct: 230 MNLLLYMAPMAALILLPFTLYIEGNVAAFTVEKARGDSFIIFLLIGNATVAYLVNLTNFL 289

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGMT FAVT M VVLYS+ KKR K+
Sbjct: 290 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKV 349

Query: 108 STH 110
           +TH
Sbjct: 350 TTH 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460451|ref|XP_004147959.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Cucumis sativus] gi|449494278|ref|XP_004159500.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Cucumis sativus]

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 93/123 (75%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPF+LYIEG              FIV+LLLGNAT+AYLV LT F 
Sbjct: 236 MNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARGNSFIVFLLLGNATVAYLVNLTNFL 295

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGM  FAVT M VVLYS+ KKR K+
Sbjct: 296 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFAVTIMGVVLYSEAKKRSKV 355

Query: 108 STH 110
           +TH
Sbjct: 356 TTH 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514182|ref|XP_003525785.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 92/123 (74%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA +AA I LPFTLYIEG              FIV+LLLGNAT+AYLV LT F 
Sbjct: 232 MNLLLYMAPLAAMILLPFTLYIEGNVLALTIEKAKGDPFIVFLLLGNATVAYLVNLTNFL 291

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGM  F +T M VVLYS+ KKR K+
Sbjct: 292 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITIMGVVLYSEAKKRSKV 351

Query: 108 STH 110
           +TH
Sbjct: 352 TTH 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563286|ref|XP_003549895.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 92/123 (74%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA +AA I LPFTLYIEG              FIV+LLLGNAT+AYLV LT F 
Sbjct: 233 MNLLLYMAPLAALILLPFTLYIEGNVLALTVEKAKGDPFIVFLLLGNATVAYLVNLTNFL 292

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGM  F +T M VVLYS+ KKR K+
Sbjct: 293 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITIMGVVLYSEAKKRSKV 352

Query: 108 STH 110
           +TH
Sbjct: 353 TTH 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054031|ref|XP_002298084.1| predicted protein [Populus trichocarpa] gi|222845342|gb|EEE82889.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 91/123 (73%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA MAA I LPFTLYIEG              +IV+LL+GN+T+AYLV LT F 
Sbjct: 239 MNLLLYMAPMAALILLPFTLYIEGNVASITIEKARGDPYIVFLLIGNSTVAYLVNLTNFL 298

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AA V +LIF+NPVT MGM  FAVT M VVLYS+ KKR K+
Sbjct: 299 VTKHTSALTLQVLGNAKAAVAAAVSILIFRNPVTAMGMVGFAVTIMGVVLYSEAKKRSKV 358

Query: 108 STH 110
           +TH
Sbjct: 359 TTH 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512237|gb|AFK44180.1| unknown [Medicago truncatula]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 92/123 (74%), Gaps = 13/123 (10%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVILTKFF 47
           MNLL+YMA +AA I LP TLYIEG              FIV+LL+GNAT+AYLV LT F 
Sbjct: 232 MNLLLYMAPLAAMILLPVTLYIEGNVFAITIEKARSDPFIVFLLIGNATVAYLVNLTNFL 291

Query: 48  VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
           V KHT  LTLQVLGNAKAA+AAVV VLIF+NPVTVMGMT F +TTM VVLYS+ KKR K 
Sbjct: 292 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFGITTMGVVLYSEAKKRSKG 351

Query: 108 STH 110
           ++H
Sbjct: 352 ASH 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2034730	361	AT1G12500 [Arabidopsis thalian	0.972	0.296	0.525	7.8e-23
TAIR|locus:2166384	309	AT5G05820 [Arabidopsis thalian	0.963	0.343	0.445	2.8e-15
TAIR|locus:2074713	308	AT3G11320 [Arabidopsis thalian	0.963	0.344	0.436	6.2e-15
TAIR|locus:2146683	309	AT5G04160 "AT5G04160" [Arabido	0.963	0.343	0.378	1.7e-12
TAIR|locus:2076239	355	AT3G10290 [Arabidopsis thalian	0.963	0.298	0.352	3.4e-12

TAIR|locus:2034730 AT1G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 63/120 (52%), Positives = 72/120 (60%)

Query:     1 MNLLVYMALMAASIFLPFTLYIEGI-------------FIVYLLLGNATIAYLVILTKFF 47
             MNLL+YMA MAA I LPFTLYIEG               I++LL GNAT+AYLV LT F 
Sbjct:   238 MNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFL 297

Query:    48 VKKHTCTLTLQXXXXXXXXXXXXXXXXIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKI 107
             V KHT  LTLQ                IF+NPVTVMG+  F VT M VVLYS+ +KR K+
Sbjct:   298 VTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKL 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

TAIR|locus:2166384 AT5G05820 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 53/119 (44%), Positives = 66/119 (55%)

Query:     1 MNLLVYMALMAASIFLPFTLYIE----GI--------F-IVYLLLGNATIAYLVILTKFF 47
             MNLL+YMA +A  + LP TL +E    GI        F IV+ LL N+ +AYLV LT F 
Sbjct:   190 MNLLLYMAPIAVVLLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYLVNLTNFL 249

Query:    48 VKKHTCTLTLQXXXXXXXXXXXXXXXXIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
             V  HT  LTLQ                IFKNPV+V GM  +++T   V+LYS+ KKR K
Sbjct:   250 VTNHTSALTLQVLGNAKGAVAVVVSILIFKNPVSVTGMLGYSLTVCGVILYSEAKKRNK 308

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2074713 AT3G11320 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 52/119 (43%), Positives = 65/119 (54%)

Query:     1 MNLLVYMALMAASIFLPFTLYIE----GI--------F-IVYLLLGNATIAYLVILTKFF 47
             MNLL+YMA +A    LP TL +E    GI        F IV+ LL N+ +AY V LT F 
Sbjct:   190 MNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYFVNLTNFL 249

Query:    48 VKKHTCTLTLQXXXXXXXXXXXXXXXXIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
             V KHT  LTLQ                IF+NPV+V GM  +++T   V+LYS+ KKR K
Sbjct:   250 VTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVCGVILYSEAKKRSK 308

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2146683 AT5G04160 "AT5G04160" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 45/119 (37%), Positives = 63/119 (52%)

Query:     1 MNLLVYMALMAASIFLPFTLYIE-GIFIV---------Y---LLLGNATIAYLVILTKFF 47
             MNL++YM+ +A    LP TL++E  +  V         Y   LLL N+ +AY   L  F 
Sbjct:   191 MNLMLYMSPIAVIALLPVTLFMEPDVISVTLTLAKQHQYMWILLLVNSVMAYSANLLNFL 250

Query:    48 VKKHTCTLTLQXXXXXXXXXXXXXXXXIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
             V KHT  LTLQ                IF+NPVTVMG+  +++T + VV Y + K+RF+
Sbjct:   251 VTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTVMGIGGYSITVLGVVAYGETKRRFR 309

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2076239 AT3G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 42/119 (35%), Positives = 62/119 (52%)

Query:     1 MNLLVYMALMAASIFLPFTLYIE-GIFIVYLLLG------------NATIAYLVILTKFF 47
             MNL++YM+ +A    LP T+++E  +  V L LG            N+ +AY   L  F 
Sbjct:   237 MNLMLYMSPIAVIALLPVTIFMEPDVMSVTLTLGRQHKYMYILLLVNSVMAYSANLLNFL 296

Query:    48 VKKHTCTLTLQXXXXXXXXXXXXXXXXIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106
             V KHT  LTLQ                +F+NPVTVMG+  +++T + VV Y + K+RF+
Sbjct:   297 VTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVMGIGGYSITVLGVVAYGETKRRFR 355


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.335   0.143   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110        94   0.00091  102 3  10 21  0.48    28
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.60u 0.14s 11.74t   Elapsed:  00:00:00
  Total cpu time:  11.60u 0.14s 11.74t   Elapsed:  00:00:00
  Start:  Fri May 10 23:25:09 2013   End:  Fri May 10 23:25:09 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0018022001 hypothetical protein (361 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	2e-07

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 1   MNLLVYMALMAASIFLPFTLYIEG----------------IFIVYLLLGNATIAYLVILT 44
           + LL Y++ +A  + LP  L+ EG                   V LLL +  +A+L  L+
Sbjct: 34  LELLYYLSPVAFIVLLPGLLFSEGFKLGKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLS 93

Query: 45  KFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99
            F +   T  LT  V G  K  +  V+ V+IF +PVT + +   A+  + VVLYS
Sbjct: 94  AFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVLYS 148

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.91
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.91
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.71
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.59
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.57
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.55
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.52
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.48
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.26
KOG1580	337	consensus UDP-galactose transporter related protei	99.02
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.77
KOG1581	327	consensus UDP-galactose transporter related protei	98.38
PLN00411	358	nodulin MtN21 family protein; Provisional	98.0
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.98
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.9
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.84
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.81
PLN00411	358	nodulin MtN21 family protein; Provisional	97.75
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.74
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.66
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.64
PRK11689	295	aromatic amino acid exporter; Provisional	97.64
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.58
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.52
PRK15430	296	putative chloramphenical resistance permease RarD;	97.47
PRK11272	292	putative DMT superfamily transporter inner membran	97.47
PRK15430	296	putative chloramphenical resistance permease RarD;	97.4
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.25
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.11
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.07
KOG1582	367	consensus UDP-galactose transporter related protei	96.97
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.59
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.56
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.45
PRK11431	105	multidrug efflux system protein; Provisional	96.35
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.33
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.29
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.28
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.24
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.18
COG2076	106	EmrE Membrane transporters of cations and cationic	96.13
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.11
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.08
COG2510	140	Predicted membrane protein [Function unknown]	95.98
KOG3912	372	consensus Predicted integral membrane protein [Gen	95.95
PRK11689	295	aromatic amino acid exporter; Provisional	95.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.6
PRK11272	292	putative DMT superfamily transporter inner membran	95.43
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.34
COG2962	293	RarD Predicted permeases [General function predict	94.97
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	94.39
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	94.29
COG2962	293	RarD Predicted permeases [General function predict	94.15
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	93.94
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	91.92
KOG2765	416	consensus Predicted membrane protein [Function unk	90.86
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	90.08
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	88.06
KOG2765	416	consensus Predicted membrane protein [Function unk	83.39
KOG4510	346	consensus Permease of the drug/metabolite transpor	81.45

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.91  E-value=2.3e-25  Score=172.17  Aligned_cols=109  Identities=39%  Similarity=0.555  Sum_probs=97.0

Q ss_pred             ChhHHHHhHHHHHHHH-HHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124            1 MNLLVYMALMAASIFL-PFTLYIEGIFI-----------VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA   68 (110)
Q Consensus         1 ~~ll~~~sp~~~~~l~-~~~~~~E~~~~-----------~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~   68 (110)
                      +|+++|++|+++..++ |.+...|++..           ...++++.+++|++|++.|+++++|||+|++|+|++|++++
T Consensus       196 ~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~v  275 (316)
T KOG1441|consen  196 MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVV  275 (316)
T ss_pred             hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEE
Confidence            5899999999999999 87777776332           22334444999999999999999999999999999999999


Q ss_pred             HHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124           69 AVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST  109 (110)
Q Consensus        69 i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~  109 (110)
                      +..|+++|+||+|+.|+.|++++++|+++|++.|.|+|.++
T Consensus       276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            99999999999999999999999999999999999988653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.91  E-value=1.3e-23  Score=144.48  Aligned_cols=100  Identities=33%  Similarity=0.560  Sum_probs=93.8

Q ss_pred             ChhHHHHhHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhh
Q 037124            1 MNLLVYMALMAASIFLPFTLYIEGIF------------------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGN   62 (110)
Q Consensus         1 ~~ll~~~sp~~~~~l~~~~~~~E~~~------------------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~   62 (110)
                      +++++|++|.+++.++|.++..|+++                  .+..++.+|++++++|+++|+++++|||+|++|+|+
T Consensus        36 ~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~  115 (153)
T PF03151_consen   36 LNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGN  115 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHH
Confidence            37899999999999999999988743                  256778999999999999999999999999999999


Q ss_pred             hhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124           63 AKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK  100 (110)
Q Consensus        63 ~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~  100 (110)
                      +|+++++++|+++|||++|+.++.|+.+++.|..+|+|
T Consensus       116 ~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  116 VKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            99999999999999999999999999999999999986

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.71  E-value=1.7e-16  Score=123.77  Aligned_cols=100  Identities=27%  Similarity=0.429  Sum_probs=89.8

Q ss_pred             hHHHHhHHHHHHHHHHHHHHhHHH-------------------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhh
Q 037124            3 LLVYMALMAASIFLPFTLYIEGIF-------------------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNA   63 (110)
Q Consensus         3 ll~~~sp~~~~~l~~~~~~~E~~~-------------------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~   63 (110)
                      .+.+.++.++++++|+.+..|++.                   ++..++.+|+.+|++|.++|++++++||+|+++.|++
T Consensus       232 ~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~l  311 (350)
T PTZ00343        232 IYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTL  311 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            556678999999999988777531                   1335678999999999999999999999999999999


Q ss_pred             hhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           64 KAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        64 K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      |+++.+++|+++|||++|+.+++|.++++.|.++|++.|
T Consensus       312 k~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        312 KRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999875

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=5.6e-15  Score=113.88  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=94.7

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHhH-H------------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124            2 NLLVYMALMAASIFLPFTLYIEG-I------------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA   68 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~~E~-~------------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~   68 (110)
                      ++++|++-.+...+....+++|. +            ..+..+.+||+++|..|++.++|...+|++|++++| +|+...
T Consensus       189 ~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~  267 (314)
T KOG1444|consen  189 GLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLL  267 (314)
T ss_pred             eEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHH
Confidence            46789999999998888876542 2            247789999999999999999999999999999999 999999


Q ss_pred             HHHhHhhccCc-cchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124           69 AVVLVLIFKNP-VTVMGMTEFAVTTMIVVLYSKVKKRFKIST  109 (110)
Q Consensus        69 i~~s~~~fg~~-~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~  109 (110)
                      ..++.+.+||. +++.|.+|+.+.+.|..+|++.+.|+|-++
T Consensus       268 t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  268 TYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            99999988875 899999999999999999999998887554

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.57  E-value=2.2e-14  Score=108.88  Aligned_cols=107  Identities=23%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHH-HHHHHHHHHHHHhHhccchhHHHHhhhh
Q 037124            2 NLLVYMALMAASIFLPFTLYIEGIF-----------------IVYLLLGNA-TIAYLVILTKFFVKKHTCTLTLQVLGNA   63 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~~E~~~-----------------~~~~l~~sg-~~af~~n~~~f~~i~~tS~lT~sV~g~~   63 (110)
                      ++..|+.+.+++.++|.+...|++.                 .+...+..+ ...+..|...|..++++||.|.++.+.+
T Consensus       177 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l  256 (302)
T TIGR00817       177 NLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCM  256 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhh
Confidence            4678899999999999988776421                 111122333 3566788999999999999999999999


Q ss_pred             hhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 037124           64 KAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIS  108 (110)
Q Consensus        64 K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~  108 (110)
                      |.+..+++|++++||++|+.+++|.++++.|..+|++.|.|+|.+
T Consensus       257 ~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       257 KRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             hhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            999999999999999999999999999999999999988776643

specificities overlap.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.55  E-value=1.9e-14  Score=110.91  Aligned_cols=100  Identities=20%  Similarity=0.392  Sum_probs=92.6

Q ss_pred             ChhHHHHhHHHHHHHHHHHHHHhHHH---------------H---HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhh
Q 037124            1 MNLLVYMALMAASIFLPFTLYIEGIF---------------I---VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGN   62 (110)
Q Consensus         1 ~~ll~~~sp~~~~~l~~~~~~~E~~~---------------~---~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~   62 (110)
                      ++.+++++|++.+.++|..+.+|++.               +   ...+.+.|.++|++-.++|.++.+||.+|.|++|+
T Consensus       198 ~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI  277 (349)
T KOG1443|consen  198 IDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGI  277 (349)
T ss_pred             eeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHH
Confidence            36789999999999999999999842               1   44678899999999999999999999999999999


Q ss_pred             hhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124           63 AKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK  100 (110)
Q Consensus        63 ~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~  100 (110)
                      +|++.++.++..+-+|.+|..|+.|..+++.|+..|..
T Consensus       278 ~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  278 VKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999943

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.52  E-value=2.7e-13  Score=103.44  Aligned_cols=105  Identities=21%  Similarity=0.290  Sum_probs=94.9

Q ss_pred             hhHHHHhHHHHHHHHHHHHH--H-hH----------HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124            2 NLLVYMALMAASIFLPFTLY--I-EG----------IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA   68 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~--~-E~----------~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~   68 (110)
                      |+++|++.++.+.+++....  . |.          |+.+..++++++.+...+...+.+++++||+|.++++++|+.++
T Consensus       186 ~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~s  265 (303)
T PF08449_consen  186 ELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLS  265 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Confidence            67899999999998877776  2 32          34577788999999999999999999999999999999999999


Q ss_pred             HHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 037124           69 AVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK  106 (110)
Q Consensus        69 i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k  106 (110)
                      +++|+++||+++++.+++|.++.+.|..+|++.|+|+|
T Consensus       266 illS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  266 ILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999875

; GO: 0055085 transmembrane transport

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.3e-14  Score=110.74  Aligned_cols=109  Identities=23%  Similarity=0.196  Sum_probs=98.2

Q ss_pred             hhHHHHhHHHHHHHHHHHHHH-hH-----------HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHH
Q 037124            2 NLLVYMALMAASIFLPFTLYI-EG-----------IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAA   69 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~~-E~-----------~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i   69 (110)
                      .+-+|++..+.+..+|...+. |.           .++|..+.+||+++|.+|+..++-|+.|||+||+|.|+.|.+.+.
T Consensus       217 ~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQT  296 (347)
T KOG1442|consen  217 RLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQT  296 (347)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHH
Confidence            356899999999999988765 43           136889999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhccC
Q 037124           70 VVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH  110 (110)
Q Consensus        70 ~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~~  110 (110)
                      ++++.+++|.-+..-+.|-.+.+.|...|++.|.+|...+|
T Consensus       297 vlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~  337 (347)
T KOG1442|consen  297 VLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS  337 (347)
T ss_pred             HHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998775544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.26  E-value=4.2e-11  Score=89.69  Aligned_cols=108  Identities=14%  Similarity=0.238  Sum_probs=99.3

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124            2 NLLVYMALMAASIFLPFTLYIEGI-----------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV   70 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~~E~~-----------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~   70 (110)
                      |.+||++.++...++..++.+|..           +-...+.+||++++...+++-|+++.||+.|++.+|.+++....+
T Consensus       187 dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~al  266 (309)
T COG5070         187 DTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIAL  266 (309)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHH
Confidence            679999999999999999999862           236688999999999999999999999999999999999999999


Q ss_pred             HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124           71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST  109 (110)
Q Consensus        71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~  109 (110)
                      .|.++||+|++.+.+..+.+.+.....|+++|.+++.+|
T Consensus       267 aGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q  305 (309)
T COG5070         267 AGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ  305 (309)
T ss_pred             hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999988765544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.02  E-value=1.2e-09  Score=82.62  Aligned_cols=107  Identities=15%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             hhHHHHhHHHHHHHHHHHHHH-hHH----------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124            2 NLLVYMALMAASIFLPFTLYI-EGI----------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV   70 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~~~~~-E~~----------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~   70 (110)
                      ++++|++-++.+.+....++. |..          ..++.+.+-++.+.+-..+.|..+...+|||.||+-+.|+..+++
T Consensus       204 ~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil  283 (337)
T KOG1580|consen  204 SMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTIL  283 (337)
T ss_pred             hhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHH
Confidence            578899999999987766654 432          347777777788888899999999999999999999999999999


Q ss_pred             HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 037124           71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIS  108 (110)
Q Consensus        71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~  108 (110)
                      .|+++|+||++++|++|..+.+.|...-....++.++-
T Consensus       284 ~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~~t  321 (337)
T KOG1580|consen  284 ISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAPMT  321 (337)
T ss_pred             HHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCccc
Confidence            99999999999999999999999998766655544443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.77  E-value=9.4e-09  Score=78.84  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           25 IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        25 ~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      |+.|+.++.+++..+.+.-..|.+..+|++||.+++=++|+.+..++|+++|+||+|+..++|..+.+.|.++|+....+
T Consensus       239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~  318 (330)
T KOG1583|consen  239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH  318 (330)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             hh
Q 037124          105 FK  106 (110)
Q Consensus       105 ~k  106 (110)
                      .|
T Consensus       319 ~~  320 (330)
T KOG1583|consen  319 PK  320 (330)
T ss_pred             cc
Confidence            33

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.38  E-value=2.1e-06  Score=66.54  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             hhHHHHhHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124            2 NLLVYMALMAASIFLPF-----------TLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV   70 (110)
Q Consensus         2 ~ll~~~sp~~~~~l~~~-----------~~~~E~~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~   70 (110)
                      +++++++-..++....-           .+..|-|+.++-+++=+.++-.-....|..+++-+|+|++..-+.|+.+.+.
T Consensus       204 ~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~  283 (327)
T KOG1581|consen  204 HMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM  283 (327)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence            56788888777764432           2223446677777666666667788899999999999999999999999999


Q ss_pred             HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124           71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF  105 (110)
Q Consensus        71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~  105 (110)
                      +|.+.||++++..|+.|..+.+.|..+=.+.|+|+
T Consensus       284 lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~  318 (327)
T KOG1581|consen  284 LSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK  318 (327)
T ss_pred             HHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence            99999999999999999999999999988877773

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.00  E-value=0.00016  Score=57.03  Aligned_cols=66  Identities=11%  Similarity=0.043  Sum_probs=59.9

Q ss_pred             HHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124           44 TKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST  109 (110)
Q Consensus        44 ~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~  109 (110)
                      .-++.+++.+|..-++...+--+...++|++++||++++.+++|.++.+.|+++-++.|++|..||
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~  337 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ  337 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            455689999999999999999999999999999999999999999999999999888777665544

>TIGR00803 nst UDP-galactose transporter

Probab=97.98  E-value=1.7e-05  Score=57.85  Aligned_cols=58  Identities=14%  Similarity=0.016  Sum_probs=54.1

Q ss_pred             HHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           41 VILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        41 ~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      ..++..+++++.++.+.+++...+.++..++|+++||+++|+.++.|..+.+.|.+.|
T Consensus       165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            3455889999999999999999999999999999999999999999999999998776

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.90  E-value=0.00035  Score=53.05  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             HHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           44 TKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        44 ~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      .-+..+++.+|-+-++...+.-+..++.|++++||+.++.+++|.++.+.|.+.++...+|
T Consensus       225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4567899999999999999999999999999999999999999999999999999766444

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.84  E-value=0.00033  Score=45.21  Aligned_cols=72  Identities=19%  Similarity=0.153  Sum_probs=61.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATI-AYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        28 ~~~l~~sg~~-af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      +......|.+ ...-+..-+...+++++-..+......-+...+.+++++||+.+..+++|..+.+.|..+-+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   53 WLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3334444444 57778888889999999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.81  E-value=0.00012  Score=57.45  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHh
Q 037124            4 LVYMALMAASIFLPFTLYIEGIFI---------VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVL   74 (110)
Q Consensus         4 l~~~sp~~~~~l~~~~~~~E~~~~---------~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~   74 (110)
                      +..++-...++..+....+|..++         ...++.-++.-|......-.+++.+||+.+++.=..-+.-.++.+++
T Consensus       200 lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~  279 (334)
T PF06027_consen  200 LGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIF  279 (334)
T ss_pred             HHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence            444555666666666666776432         33333344444455445556899999999999888889999999999


Q ss_pred             hccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           75 IFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        75 ~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      +||+++++.-.+|.++.+.|...|+....+
T Consensus       280 ~f~~~~~~ly~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  280 FFGYKFSWLYILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             hcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence            999999999999999999999999876443

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.75  E-value=0.00056  Score=54.00  Aligned_cols=89  Identities=12%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhH----H----HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhh------
Q 037124           10 MAASIFLPFTLYIEG----I----FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLI------   75 (110)
Q Consensus        10 ~~~~~l~~~~~~~E~----~----~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~------   75 (110)
                      ++++.++|++...|.    +    +-+..+.+.|++++.++...+.-.+.|||-.-++....--+.+.++++++      
T Consensus        52 iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~  131 (358)
T PLN00411         52 LASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVS  131 (358)
T ss_pred             HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhh
Confidence            455666777665543    1    12455667777777788889999999999999999999999999999999      


Q ss_pred             ccCccchhhHHHHHHHHHHHHHH
Q 037124           76 FKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        76 fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      ++|+.+..+++|+.+++.|..+=
T Consensus       132 ~~er~~~~~~~G~~l~~~Gv~ll  154 (358)
T PLN00411        132 FKERSSVAKVMGTILSLIGALVV  154 (358)
T ss_pred             hcccccHHHHHHHHHHHHHHHHH
Confidence            69999999999999999998763

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.74  E-value=0.00023  Score=53.43  Aligned_cols=80  Identities=19%  Similarity=0.068  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           25 IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        25 ~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      ++-...+.+.+++....|...|...+...|.|+++....|-+.+-+++++++|.+++.+||.++.+...|....+.....
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            44467788999999999999999999999999999999999999999999999999999999999999999987765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.66  E-value=0.0016  Score=47.75  Aligned_cols=92  Identities=15%  Similarity=0.012  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHH
Q 037124            8 ALMAASIFLPFTLYI-EGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMT   86 (110)
Q Consensus         8 sp~~~~~l~~~~~~~-E~~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~   86 (110)
                      ...+.+.+.|..... +..+....+..+++...+.+...+..++++++-+-++.-...-+.+..++.+++||+++.++++
T Consensus        26 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~  105 (260)
T TIGR00950        26 LIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLL  105 (260)
T ss_pred             HHHHHHHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHH
Confidence            344445555543332 2223345556666666777888889999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 037124           87 EFAVTTMIVVLYS   99 (110)
Q Consensus        87 G~~i~l~G~~~Ys   99 (110)
                      |+.+++.|..+..
T Consensus       106 gi~i~~~Gv~li~  118 (260)
T TIGR00950       106 AAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHhHHhhc
Confidence            9999999988754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.64  E-value=0.0016  Score=49.08  Aligned_cols=95  Identities=14%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             HHHhHHHHHHHHHHHHHH----hH----HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhc
Q 037124            5 VYMALMAASIFLPFTLYI----EG----IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIF   76 (110)
Q Consensus         5 ~~~sp~~~~~l~~~~~~~----E~----~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~f   76 (110)
                      .+.....++.+.|.....    +.    .+.+..++.++......+.+.+...+++++-.-++.....-+...+++++++
T Consensus        32 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~  111 (281)
T TIGR03340        32 WWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTL  111 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHH
Confidence            455566666777766542    11    1235567778888888888989999998888888888888999999999999


Q ss_pred             cCccchhhHHHHHHHHHHHHHHH
Q 037124           77 KNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        77 g~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      ||+.+..++.|..+++.|...=.
T Consensus       112 ~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340       112 GETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999987643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.64  E-value=0.0025  Score=48.42  Aligned_cols=72  Identities=17%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      +..++..|+....-...-+..+++.+|.+.++...+.-++.++++++++||++|+.+++|.++.+.|...-.
T Consensus       215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            333444555555556667889999999999999999999999999999999999999999999999986543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.58  E-value=0.0017  Score=47.64  Aligned_cols=87  Identities=18%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHH-HHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccch
Q 037124            9 LMAASIFLPFTLYIEGI-----FIVYLLLGNATIA-YLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTV   82 (110)
Q Consensus         9 p~~~~~l~~~~~~~E~~-----~~~~~l~~sg~~a-f~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~   82 (110)
                      -.+.+.+.|.....|.+     +.+..++..|.++ ..-...-+..+++.++-+.++.....-+...+++++++||+.++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~  246 (260)
T TIGR00950       167 LLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL  246 (260)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            34455556665544321     2233344444433 34445567789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 037124           83 MGMTEFAVTTMIV   95 (110)
Q Consensus        83 ~~~~G~~i~l~G~   95 (110)
                      .+++|..+.+.|.
T Consensus       247 ~~~~G~~li~~g~  259 (260)
T TIGR00950       247 PQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999885

>TIGR00688 rarD rarD protein

Probab=97.52  E-value=0.0035  Score=46.32  Aligned_cols=69  Identities=9%  Similarity=0.039  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      ..+...|++....+.+-+..++++++-+-++....--+.+.+++++++||+++.+++.|..+++.|+.+
T Consensus        71 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        71 LSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            346777877778888889999999999999999999999999999999999999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.47  E-value=0.0046  Score=46.97  Aligned_cols=69  Identities=10%  Similarity=-0.010  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           30 LLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        30 ~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      ....+++.....+.+.|+.++++++-+-++....--+.+.+++++++||+++.+++.|..+++.|+.+-
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            344666667778899999999999999999999999999999999999999999999999999998764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.47  E-value=0.0058  Score=46.28  Aligned_cols=65  Identities=11%  Similarity=0.082  Sum_probs=57.7

Q ss_pred             HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           40 LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        40 ~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      .-...-+..+++.++-+.++.....-+...+.|++++||+.|+.+++|..+.+.|..+-+..++|
T Consensus       225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33446667889999999999999999999999999999999999999999999999998776554

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.40  E-value=0.0039  Score=47.37  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124           30 LLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK  100 (110)
Q Consensus        30 ~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~  100 (110)
                      .+...|+.+-.-..+-+..+++.+|-+.+....+.-+..++.|++++||+.++.+++|.++.+.|......
T Consensus       215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34444444445666788899999999999999999999999999999999999999999999877766543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.25  E-value=0.0055  Score=40.29  Aligned_cols=74  Identities=12%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAY-LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        28 ~~~l~~sg~~af-~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      +......|.+.. .-+...++..+.+++ .-.+.-..--+...++|.++|+|++++.++.|..+++.|+..=.+.+
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            344556566665 555666667777765 55577777888899999999999999999999999999998755543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.11  E-value=0.0042  Score=47.07  Aligned_cols=71  Identities=11%  Similarity=0.006  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      +..++..|++....+..++..++.+|+-+.++.....-+.+.+++.++++|+.+..++.|..+++.|...-
T Consensus        65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            55566666667778889999999999999999999999999999999999999999999999999998753

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.07  E-value=0.027  Score=42.79  Aligned_cols=72  Identities=11%  Similarity=-0.019  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTK-FFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~-f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      +..++..|+++-...+.. +..+++.+|-+.++...+--+...+.|++++||++++.+++|..+.+.|...=.
T Consensus       214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            444444444444444444 356788999999999999999999999999999999999999999999997743

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.0039  Score=48.45  Aligned_cols=75  Identities=17%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      ....++=++.+|+-..+..-+++..+|++..-+-+.|+.+++++|+++|..|+|.+-.-|-.+...|+++=-+.|
T Consensus       260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            344555556667777788889999999999999999999999999999999999999999999999998744433

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.59  E-value=0.023  Score=38.94  Aligned_cols=72  Identities=11%  Similarity=0.017  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhh---HHHHHHhH--hhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124           32 LGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKA---ALAAVVLV--LIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF  105 (110)
Q Consensus        32 ~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~---v~~i~~s~--~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~  105 (110)
                      +..|+..+.+.+......-+.-|++.  +..+=.   +.....++  .+|||++|+.+++|.++.++|+..-+..++++
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~--Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~  127 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSR--AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA  127 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence            44555555555444443333333332  222222   33444555  48999999999999999999999977655543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.56  E-value=0.085  Score=35.22  Aligned_cols=47  Identities=6%  Similarity=0.118  Sum_probs=39.9

Q ss_pred             hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           55 LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        55 lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      +.|.+-.-+-.+.+.+.|+++|||++|+.+++|+.+.+.|+..=+..
T Consensus        58 iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         58 IAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45566556677889999999999999999999999999999986543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.45  E-value=0.011  Score=44.50  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      +..+..+++.+..-...-+..+++.++-+.+....+--+..++.|++++||+.+..+++|.++.+.|+.+
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3345556666666666777888888887777777777799999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.35  E-value=0.14  Score=33.89  Aligned_cols=46  Identities=11%  Similarity=0.086  Sum_probs=41.5

Q ss_pred             chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           53 CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        53 S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      =.+.|++=.-+-.+.+.+.|+++|||++|+.+++|+.+.+.|+..=
T Consensus        55 ~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         55 VGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3567888888888999999999999999999999999999999874

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.33  E-value=0.034  Score=43.52  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      .+..++.-|++++..+...+..++.+|+-..++.-..--+.+.+++.+++||+.+.+++.|+.+.++|+.+=
T Consensus       113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~  184 (350)
T PTZ00343        113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALA  184 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhe
Confidence            456677788888877888888899999988888888888899999999999999999999999999999763

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.29  E-value=0.023  Score=43.31  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK  106 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k  106 (110)
                      +.....-+++-+.-+..+....+..|-=|+.+.-..|-+.+.+++.+++|++.+..++.+..+...|+..+...+.+++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            3445556677778888899999999999999999999999999999999999999999999999999999887765433

; GO: 0055085 transmembrane transport

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.28  E-value=0.09  Score=35.70  Aligned_cols=49  Identities=12%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             hhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           54 TLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        54 ~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      .+.|.+-.-+-.+.+...|+++|||++|+.+++|+.+.+.|+..=+...
T Consensus        57 siAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         57 GVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3456665556788899999999999999999999999999998865543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.24  E-value=0.05  Score=39.66  Aligned_cols=74  Identities=19%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYL-VILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        28 ~~~l~~sg~~af~-~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      +..+...|+++-. --..-+...++.++...+......-+.....++.++||+.+..+++|..+.+.|....+..
T Consensus       214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4445555555543 4555567889999999999998999999999999999999999999999999999998876

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.18  E-value=0.12  Score=34.30  Aligned_cols=42  Identities=14%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           55 LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        55 lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      ..+.+.. .--+.+...|+++|||++|+++++|+++.+.|+..
T Consensus        65 ~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         65 IAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3444444 66778899999999999999999999999999875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.13  E-value=0.13  Score=34.30  Aligned_cols=48  Identities=15%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124           53 CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK  100 (110)
Q Consensus        53 S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~  100 (110)
                      =.+.|.+=.=+-.+.+...|+++|||++++.+++|+++.++|+..=+.
T Consensus        56 vgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          56 LGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            345678888888899999999999999999999999999999987544

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.11  E-value=0.21  Score=33.35  Aligned_cols=44  Identities=11%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             hhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           54 TLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        54 ~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      .+.|++=.-+-.+.+.+.|+++|||++|+.+++|+++.+.|+..
T Consensus        62 gvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         62 SVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            45677777788899999999999999999999999999999876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.08  E-value=0.034  Score=43.80  Aligned_cols=71  Identities=11%  Similarity=0.075  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      |+.-++-|++=..-|+......+.||-.+.++....--+.+.++|+++.+++.++.+++|..++++|...=
T Consensus        79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv  149 (334)
T PF06027_consen   79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLV  149 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhe
Confidence            44444457888899999999999999999999999999999999999999999999999999999998753

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=95.98  E-value=0.022  Score=39.59  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      .|..+.+||+.+=+--++-|+.+++--+=--.=.-..--++.+.+|+.++||+.|..+++|+.+..+|..+
T Consensus        66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            37778889876655556666665532111001111223367889999999999999999999999999765

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=95.95  E-value=0.011  Score=46.13  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           40 LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        40 ~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      +.|++...+.++-|+.|..+.-.+|..++=++++..+.|.+...|+.|.++-+.|.+.|+-.
T Consensus       274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999854

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.68  E-value=0.099  Score=39.64  Aligned_cols=69  Identities=9%  Similarity=0.021  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHh----ccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124           30 LLLGNATIAYLVILTKFFVKK----HTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY   98 (110)
Q Consensus        30 ~l~~sg~~af~~n~~~f~~i~----~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y   98 (110)
                      .++.+++.....+...|.-.+    .+++.+-++....--+.+.++++.+++|+++..+++|..+++.|..+=
T Consensus        63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li  135 (295)
T PRK11689         63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV  135 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence            344555544445554554443    456666677777778889999999999999999999999999998654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.60  E-value=0.14  Score=37.33  Aligned_cols=73  Identities=18%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhH-hhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLV-LIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~-~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      ..++..++.....+..-+..++++++-+.++....--+.+.+++. ++++|+++.+++.|..+.+.|..+-...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~  144 (292)
T COG0697          71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence            455566666666667777779999999999999999999999996 6669999999999999999999876554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=95.43  E-value=0.42  Score=36.09  Aligned_cols=71  Identities=8%  Similarity=-0.096  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhH-hccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAY-LVILTKFFVK-KHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        28 ~~~l~~sg~~af-~~n~~~f~~i-~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      +......|.+.+ ..+...+... +.+++-.-++.-..--+.+.+++.+ +||+++.+++.|..+++.|..+-.
T Consensus        68 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         68 WLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            344445555543 3344445555 6666655667777777788888875 799999999999999999987653

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.34  E-value=0.14  Score=40.69  Aligned_cols=72  Identities=18%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      ...+.+.+.+....|--.|....+-+|.|++|..++|-.-+-++++.+.+.+++.+||.-..+.+.|+..=+
T Consensus        92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            445677788999999999999999999999999999999999999999999999999999999999998866

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.97  E-value=0.88  Score=35.41  Aligned_cols=79  Identities=24%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-HhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124           26 FIVYLLLGNATIAYLVILTKFFV-KKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR  104 (110)
Q Consensus        26 ~~~~~l~~sg~~af~~n~~~f~~-i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~  104 (110)
                      +.+..++++|... .+-+..|.. -++.+==|..+...+--....++++.+|||+++..+...++..-.|.+.|+....+
T Consensus       209 ~~~~LLv~aG~vT-avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~  287 (293)
T COG2962         209 SLWLLLVLAGLVT-AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY  287 (293)
T ss_pred             hHHHHHHHhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666666544 333333433 23333344555556667788999999999999999999999999999999987665


Q ss_pred             h
Q 037124          105 F  105 (110)
Q Consensus       105 ~  105 (110)
                      +
T Consensus       288 ~  288 (293)
T COG2962         288 T  288 (293)
T ss_pred             H
Confidence            3

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=94.39  E-value=0.34  Score=36.89  Aligned_cols=69  Identities=10%  Similarity=0.017  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHh-ccchhHHHHhhhhhhHHHHHHhHhhccCccchhhH----HHHHHHHHHHHHHH
Q 037124           31 LLGNATIAYLVILTKFFVKK-HTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGM----TEFAVTTMIVVLYS   99 (110)
Q Consensus        31 l~~sg~~af~~n~~~f~~i~-~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~----~G~~i~l~G~~~Ys   99 (110)
                      ..+.|++...-|..-+.-.+ +..+-+.++...+.-++.++.|++++||+.+++|.    +|..+.+.|..+=.
T Consensus       214 ~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       214 NILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            34477775444555546667 89999999999999999999999999999999999    99999999987643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=94.29  E-value=0.46  Score=35.98  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             HHHHhHhcc-chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124           44 TKFFVKKHT-CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS   99 (110)
Q Consensus        44 ~~f~~i~~t-S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys   99 (110)
                      ..|...+++ ++-.-++....--+.+.++++++++|+++.++++|..+++.|..+=.
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            344555554 33344555556678889999999999999999999999999987543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.15  E-value=1.8  Score=33.78  Aligned_cols=70  Identities=10%  Similarity=0.048  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           27 IVYLLLGNATIAYLVILTKFF-VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        27 ~~~~l~~sg~~af~~n~~~f~-~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      .+..+.+++.+- ..|...|. .+..-..+.-|..=-+.-.+.+++|.++++|+++..|++-..++.+|+..
T Consensus        71 ~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~  141 (293)
T COG2962          71 TLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI  141 (293)
T ss_pred             HHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            345555555544 67888875 55555677777777778889999999999999999999999999988754

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=93.94  E-value=0.87  Score=29.10  Aligned_cols=54  Identities=9%  Similarity=0.103  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhHhccch--hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHH
Q 037124           37 IAYLVILTKFFVKKHTCT--LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAV   90 (110)
Q Consensus        37 ~af~~n~~~f~~i~~tS~--lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i   90 (110)
                      .++..++.-+...-+.=|  +.+.+-.-+-.+.+.+.|+.+|||++|+.+++|+++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            344444444443333333  445555556678999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=91.92  E-value=0.61  Score=35.53  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHh-hhhhhHHHHHHhHhhccCccchhh----HHHHHHHHHHHHHHHHH
Q 037124           27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVL-GNAKAALAAVVLVLIFKNPVTVMG----MTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~-g~~K~v~~i~~s~~~fg~~~t~~~----~~G~~i~l~G~~~Ys~~  101 (110)
                      .+..-.++|++=-.-|++-|..+++++.=+-... ...--+...+.|.++|||+.+.++    .+|..+++.|.++.+..
T Consensus        58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            3443445555544567777878777554333222 224445777899999999999999    99999999999997766


Q ss_pred             H
Q 037124          102 K  102 (110)
Q Consensus       102 k  102 (110)
                      |
T Consensus       138 ~  138 (290)
T TIGR00776       138 K  138 (290)
T ss_pred             c
Confidence            5

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=90.86  E-value=0.2  Score=40.43  Aligned_cols=74  Identities=14%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      ..-+.=|.+=|.-|+.....++.||.-..++....-...++.++.++-+|++|..+.++..+.++|+.+=+..+
T Consensus       160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~  233 (416)
T KOG2765|consen  160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD  233 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence            34466688889999999999999999999999999999999999999999999999999999999987655543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=90.08  E-value=4.1  Score=27.93  Aligned_cols=70  Identities=13%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH-HhHh-hc---cCccchhhHHHHHHHHHHHH
Q 037124           27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV-VLVL-IF---KNPVTVMGMTEFAVTTMIVV   96 (110)
Q Consensus        27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~-~s~~-~f---g~~~t~~~~~G~~i~l~G~~   96 (110)
                      .+++..++|+++-..-.+....+.+.++.+..+....-+.+.-. +-.+ +|   ++++++.+.+|..+.+.|..
T Consensus        63 ~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   63 VPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             CChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            36667779999999999999999999988887776665553322 2221 23   35689999999999999975

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=88.06  E-value=2.1  Score=34.06  Aligned_cols=74  Identities=20%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124           28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF  105 (110)
Q Consensus        28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~  105 (110)
                      |...+.++.-|.+..    ++.++...+.-.-+-.+--+++.+.|+.+||-+.|..=.+|..+.+..+..|+..++++
T Consensus       254 w~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  254 WLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            555666666664433    46677777777777778888999999999999999999999999999999999777765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=83.39  E-value=3  Score=33.85  Aligned_cols=98  Identities=11%  Similarity=-0.008  Sum_probs=72.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHhH---HH--------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHh
Q 037124            4 LVYMALMAASIFLPFTLYIEG---IF--------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVL   72 (110)
Q Consensus         4 l~~~sp~~~~~l~~~~~~~E~---~~--------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s   72 (110)
                      .-|...+..+.+.|.....+.   ++        +...+..+++..+.=-+.=-+..-.||||+-++.=.+---+.++.-
T Consensus       283 fGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD  362 (416)
T KOG2765|consen  283 FGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFAD  362 (416)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHH
Confidence            346677778888877766543   11        2233344444455445555567778999999999888888888888


Q ss_pred             HhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           73 VLIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        73 ~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      +++=|.+.|+..++|..-.++|.+.=++.
T Consensus       363 ~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  363 VLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            88889999999999999999999886654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=81.45  E-value=1.4  Score=34.47  Aligned_cols=66  Identities=12%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124           32 LGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL   97 (110)
Q Consensus        32 ~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~   97 (110)
                      ++-|+++|.--+-.|+...+-|----++.--.--+.++++++.+.+||.|..+..|..+++.|+.+
T Consensus       101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVL  166 (346)
T KOG4510|consen  101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVL  166 (346)
T ss_pred             EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEE
Confidence            444555554444455544433322222233345678999999999999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.16
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.14

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.16  E-value=0.0032  Score=40.75  Aligned_cols=51  Identities=6%  Similarity=0.072  Sum_probs=41.2

Q ss_pred             ccchhHH--HHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124           51 HTCTLTL--QVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV  101 (110)
Q Consensus        51 ~tS~lT~--sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~  101 (110)
                      +.-|++.  .+-..+--+.+.+.|+++|||++|+.+++|+.+.+.|+..-+..
T Consensus        52 ~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3344443  34356677889999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.14  E-value=0.0013  Score=44.50  Aligned_cols=46  Identities=7%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             HHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124           57 LQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK  102 (110)
Q Consensus        57 ~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k  102 (110)
                      +.+...+--+.+.++|+++|||++|+.+++|+++.+.|+..-+..+
T Consensus        60 y~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           60 YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3443677888999999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00