Citrus Sinensis ID: 037145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MLGNRSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNTIS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccEEEEccc
Coil and Loop (DISEMBL)
mlgnrssdnhtkpllgtgdninnynlgeeERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATlanswacvtgfdftktnrtweglsfESFSVFLTNLKVALSSAAMVWVKILQidnleqrgsdpiefntis
Flexible Loop (DISEMBL)
mlgnrssdnhtkpllgtgdninnynlGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQidnleqrgsdpiefntis
Low Complexity Region (SEG)
MLGNRSSDNHTKPLLGTGDNINNYNLGeeerrwcrkwkeVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNTIS
Disordered region (IsUnstruct)
******************DNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNL**************
Disordered Region (DISOPRED)
***********************************KWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIE*****
Disordered Region (DISEMBL)
********NHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNTIS
Disordered Region (DISPRO)
*****************************ERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNTIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGNRSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNTIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q9LUH2	477	MATE efflux family protei	yes	no	0.470	0.153	0.636	8e-21
Q9LUH3	469	MATE efflux family protei	no	no	0.251	0.083	0.693	3e-19
Q9SIA1	477	MATE efflux family protei	no	no	0.509	0.165	0.388	2e-07
Q8GXM8	476	MATE efflux family protei	no	no	0.458	0.149	0.375	6e-07
Q9SIA5	476	MATE efflux family protei	no	no	0.651	0.212	0.288	3e-06
Q8RWF5	483	MATE efflux family protei	no	no	0.348	0.111	0.444	7e-06
Q9SIA3	476	MATE efflux family protei	no	no	0.451	0.147	0.397	9e-06
Q9SIA4	476	MATE efflux family protei	no	no	0.483	0.157	0.355	1e-05

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 4/77 (5%)

Query: 27 GEEER----RWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
          GE+ER    R     ++V+DVEEAK Q+++SLPMI+ NV YY IP+ SVMFA HLG LEL
Sbjct: 17 GEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLEL 76

Query: 83 AGATLANSWACVTGFDF 99
          AGATLANSWA V+GF F
Sbjct: 77 AGATLANSWATVSGFAF 93

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 38 KEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
          ++++DVEEAK Q+++SLPMI  N+ YY IPL SVMFA  LG LELAGATLANSWA VTGF
Sbjct: 24 QKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGF 83

Query: 98 DF 99
           F
Sbjct: 84 AF 85

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 13 PLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVM 72
          PLL   D +   NL      W           E KN    + PM    VS Y +P++SVM
Sbjct: 4  PLLLGDDQLITRNLKSTPTWWMNF------TAELKNVSSMAAPMATVTVSQYLLPVISVM 57

Query: 73 FAGHLGDLELAGATLANSWACVTGF 97
           AGH G+L+L+G TLA ++A V+GF
Sbjct: 58 VAGHCGELQLSGVTLATAFANVSGF 82

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 28 EEERRWCRK-WKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGAT 86
          +E+   C+  W+      E K     + PM    ++ Y +P++SVM AGH+G+LELAG  
Sbjct: 9  DEQLVSCKSTWQSGQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVA 68

Query: 87 LANSWACVTGFD 98
          LA S+  V+GF 
Sbjct: 69 LATSFTNVSGFS 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 17/118 (14%)

Query: 45  EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF----- 99
           E K     + PM    ++ Y +P++SVM AGH G+L+L+G  LANS+  VTGF       
Sbjct: 27  ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query: 100 ---------TKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDP 148
                        + +E +   ++S   +N+ +     +++W+ I +I  L   G DP
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICF-LISILWLYIEKI--LISLGQDP 141

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFD 98
          E KN    +LPM    V+ Y +P++SVM AGH  +L+L+G  LA S+  V+GF 
Sbjct: 30 ELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFS 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 28 EEERRWCRK-WKE-VLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGA 85
          +E+   C+  WK   L+VE  K   L ++PM    ++ Y +P++SVM AGH G+L+L+G 
Sbjct: 9  DEQIVPCKATWKSGQLNVELKKVSRL-AVPMATVTIAQYLLPVISVMVAGHNGELQLSGV 67

Query: 86 TLANSWACVTGFD 98
           LA S+  V+GF 
Sbjct: 68 ALATSFTNVSGFS 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 24 YNLGEEERRWCR-KWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
          + L +E    C+  WK      E K     + PM    ++ Y +P++SVM AGH G+L+L
Sbjct: 5  FLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQL 64

Query: 83 AGATLANSWACVTGFD 98
          +G  LA S+  V+GF 
Sbjct: 65 SGVALATSFTNVSGFS 80

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224114908	485	predicted protein [Populus trichocarpa]	0.593	0.189	0.636	2e-23
147858860	1134	hypothetical protein VITISV_039558 [Viti	0.348	0.047	0.757	1e-21
225461494	487	PREDICTED: MATE efflux family protein AL	0.348	0.110	0.757	1e-21
449467477	481	PREDICTED: MATE efflux family protein AL	0.535	0.172	0.578	2e-19
449517048	481	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.535	0.172	0.578	2e-19
225461496	493	PREDICTED: MATE efflux family protein AL	0.387	0.121	0.816	2e-19
18403810	477	mate efflux domain-containing protein [A	0.470	0.153	0.636	4e-19
255574668	484	TRANSPARENT TESTA 12 protein, putative [	0.587	0.188	0.525	9e-19
297835372	469	mate efflux family protein [Arabidopsis	0.251	0.083	0.709	1e-18
356546866	488	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.554	0.176	0.536	5e-18

>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 73/99 (73%), Gaps = 7/99 (7%)

Query: 1  MLGNRSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVAN 60
          ML N S +    PLL   ++  +   GE +R    +WK+VLDVEEAKNQ+LFSLPMI+ N
Sbjct: 1  MLSNTSFE--AAPLLERSNS--SVEEGENKRL---RWKKVLDVEEAKNQILFSLPMILTN 53

Query: 61 VSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
          V YY I LVSVMFAGHLG+LELAGATLANSWA VTGF F
Sbjct: 54 VFYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAF 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 58/70 (82%)

Query: 30  ERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLAN 89
           ERR  R WK VLDVEEAK Q+LF LPMI++NV YY+I LVSVMFAGHLGDLELAG+ LAN
Sbjct: 568 ERRDGRWWKRVLDVEEAKKQLLFGLPMILSNVFYYSITLVSVMFAGHLGDLELAGSNLAN 627

Query: 90  SWACVTGFDF 99
           SWA VTG  F
Sbjct: 628 SWATVTGLAF 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 58/70 (82%)

Query: 30 ERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLAN 89
          ERR  R WK VLDVEEAK Q+LF LPMI++NV YY+I LVSVMFAGHLGDLELAG+ LAN
Sbjct: 24 ERRDGRWWKRVLDVEEAKKQLLFGLPMILSNVFYYSITLVSVMFAGHLGDLELAGSNLAN 83

Query: 90 SWACVTGFDF 99
          SWA VTG  F
Sbjct: 84 SWATVTGLAF 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467477|ref|XP_004151449.1| PREDICTED: MATE efflux family protein ALF5-like [Cucumis sativus]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 63/95 (66%), Gaps = 12/95 (12%)

Query: 8  DNHTKPLL---GTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYY 64
          +N   PLL     GD+      G  +  W   WK++LD EE K Q+  S PMI+ NV YY
Sbjct: 3  ENPRDPLLQLSHAGDD------GTHQPIW---WKKLLDKEEVKKQLAISFPMILTNVFYY 53

Query: 65 AIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
           IPLVSVMFAGHLG+LELAGATLANSWA VTGF F
Sbjct: 54 LIPLVSVMFAGHLGELELAGATLANSWATVTGFAF 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517048|ref|XP_004165558.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein ALF5-like [Cucumis sativus]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 63/95 (66%), Gaps = 12/95 (12%)

Query: 8  DNHTKPLL---GTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYY 64
          +N   PLL     GD+      G  +  W   WK++LD EE K Q+  S PMI+ NV YY
Sbjct: 3  ENPRDPLLQLSHAGDD------GTHQPIW---WKKLLDKEEVKKQLAISFPMILTNVFYY 53

Query: 65 AIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
           IPLVSVMFAGHLG+LELAGATLANSWA VTGF F
Sbjct: 54 LIPLVSVMFAGHLGELELAGATLANSWATVTGFAF 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461496|ref|XP_002282551.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 40 VLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
          VLDVEEAK QVLF LPMI+ NV YY+I LVSVMFAGHLG+LELAGATLANSWA VTG  F
Sbjct: 40 VLDVEEAKKQVLFGLPMILTNVFYYSITLVSVMFAGHLGELELAGATLANSWATVTGIAF 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403810|ref|NP_566730.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274226|sp|Q9LUH2.1|ALF5_ARATH RecName: Full=MATE efflux family protein ALF5; AltName: Full=Protein ABERRANT LATERAL ROOT FORMATION 5; AltName: Full=Protein DTX19 gi|13384114|gb|AAK21273.1|AF337954_1 aberrant lateral root formation 5 [Arabidopsis thaliana] gi|9294512|dbj|BAB02774.1| unnamed protein product [Arabidopsis thaliana] gi|17064870|gb|AAL32589.1| Unknown protein [Arabidopsis thaliana] gi|332643256|gb|AEE76777.1| mate efflux domain-containing protein [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 4/77 (5%)

Query: 27 GEEER----RWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
          GE+ER    R     ++V+DVEEAK Q+++SLPMI+ NV YY IP+ SVMFA HLG LEL
Sbjct: 17 GEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLEL 76

Query: 83 AGATLANSWACVTGFDF 99
          AGATLANSWA V+GF F
Sbjct: 77 AGATLANSWATVSGFAF 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 62/99 (62%), Gaps = 8/99 (8%)

Query: 1  MLGNRSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVAN 60
          M     S +   PLL +     N     +   WC+K   VLDVEEAKNQ+LF+ PMI+ N
Sbjct: 1  MASGADSKDIVSPLLESRRREEN-----DRENWCKK---VLDVEEAKNQILFAFPMILTN 52

Query: 61 VSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
            YY I L+SVMFAGHLG+LELAG+TLANSW  VT   F
Sbjct: 53 AFYYLITLISVMFAGHLGELELAGSTLANSWCAVTCIAF 91

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835372|ref|XP_002885568.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297331408|gb|EFH61827.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 38 KEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
          ++++DVEEAK Q+++SLPMI  N+ YY IPL SVMFA HLG LELAGATLANSWA VTGF
Sbjct: 24 QQLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASHLGQLELAGATLANSWATVTGF 83

Query: 98 DF 99
           F
Sbjct: 84 AF 85

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546866|ref|XP_003541843.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein ALF5-like [Glycine max]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 68/97 (70%), Gaps = 11/97 (11%)

Query: 4  NRSSD---NHTKPLLGTGDNINNYNLGEEERRWCRKW-KEVLDVEEAKNQVLFSLPMIVA 59
          +RS D    H  PLL    +++++     + RW   W  ++LD+EEAK+Q+LFSLPM + 
Sbjct: 3  SRSLDGTVTHFTPLL----DVSHHKENTRQYRW---WNSKILDLEEAKHQLLFSLPMFLT 55

Query: 60 NVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
          N+ YY I LVSV+FAGHLGDL+LAGATLANSW  VTG
Sbjct: 56 NLFYYLIVLVSVIFAGHLGDLQLAGATLANSWFSVTG 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2088020	477	ALF5 "AT3G23560" [Arabidopsis	0.387	0.125	0.733	1.5e-18
TAIR|locus:2088010	469	AT3G23550 "AT3G23550" [Arabido	0.593	0.196	0.542	3.1e-18
TAIR|locus:2027834	476	AT1G73700 "AT1G73700" [Arabido	0.361	0.117	0.482	2.6e-12
TAIR|locus:2040839	480	AT2G34360 "AT2G34360" [Arabido	0.612	0.197	0.322	1.2e-08
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.361	0.115	0.464	2.6e-08
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.341	0.111	0.452	3e-07
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.354	0.114	0.436	3e-07
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.341	0.111	0.452	3.8e-07
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.341	0.109	0.452	8.3e-07
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.354	0.114	0.4	1.4e-06

TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 44/60 (73%), Positives = 51/60 (85%)

Query:    40 VLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             V+DVEEAK Q+++SLPMI+ NV YY IP+ SVMFA HLG LELAGATLANSWA V+GF F
Sbjct:    34 VIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAF 93

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISS

TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 51/94 (54%), Positives = 62/94 (65%)

Query:    40 VLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             ++DVEEAK Q+++SLPMI  N+ YY IPL SVMFA  LG LELAGATLANSWA VTGF F
Sbjct:    26 LIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGFAF 85

Query:   100 -TKTNRTWEGLSFESFSV-FLTNLKVALSSAAMV 131
              T  +   E L  + F       L + L S+ +V
Sbjct:    86 MTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIV 119

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query:    44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             EE K Q+  S P+I  ++  Y++ ++SVMF GHLG L L+ A++A S+A VTGF F
Sbjct:    23 EEVKKQLWLSAPLIGVSLLQYSLQVISVMFVGHLGSLPLSAASIATSFASVTGFTF 78

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query:    44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTK-T 102
             EE + Q+L S P+I  ++  + + ++SVMF GHLG L L+ A++A S+A VTGF F   T
Sbjct:    26 EEVEKQLLLSGPLIAVSLLQFCLQIISVMFVGHLGSLPLSAASIATSFASVTGFTFLMGT 85

Query:   103 NRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQI 138
                 + +  +S+   +  +       AM+ + +L +
Sbjct:    86 ASAMDTVCGQSYGAKMYGMLGIQMQRAMLVLTLLSV 121

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query:    44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             EE K Q+  S P+I  ++  + + ++SVMF GHLG L L+ A++A S+A VTGF F
Sbjct:    25 EEVKKQLWLSGPLIAVSLLQFCLQVISVMFVGHLGSLPLSAASIATSFASVTGFSF 80

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:    45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
             E K     + PM    ++ Y +P++SVM AGH+G+LELAG  LA S+  V+GF
Sbjct:    27 ELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGF 79

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query:    45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             E K  + F+ PM    ++ + + +VS+M  GHLG+L LA A+LA+S+  VTGF F
Sbjct:    34 ELKRLIFFAAPMAAVVIAQFMLQIVSMMMVGHLGNLSLASASLASSFCNVTGFSF 88

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:    45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
             E K     + PM    ++ Y +P++SVM AGH G+L+L+G  LANS+  VTGF
Sbjct:    27 ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGF 79

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:    45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
             E KN    +LPM    V+ Y +P++SVM AGH  +L+L+G  LA S+  V+GF
Sbjct:    30 ELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGF 82

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query:    45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF 99
             E K  + F+ PM    ++ + + ++S++  GHLG+L LA A+LA+S+  VTGF F
Sbjct:    35 ELKRLICFAAPMAAVVIAQFMLQIISMVMVGHLGNLSLASASLASSFCNVTGFSF 89

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027712001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (487 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-14
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-06
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	4e-06
pfam01554	161	pfam01554, MatE, MatE	8e-05
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	0.002
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	0.002
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	0.003

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
          EAK  +  + P+++ ++  Y++ +VSV+F GHLG LELA A+LA+S+A VTGF
Sbjct: 1  EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGF 53

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 52 FSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSW 91
           ++P+I+ N+      LV     GHLG   LA   LAN  
Sbjct: 22 LAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPI 61

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
          E +  +  +LP+++A ++  A+  V  + AG LG  +LA   L +S
Sbjct: 1  ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSS 46

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
          P+I+ N+      L+  +F GHLG + LA  ++ANS
Sbjct: 1  PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANS 36

The MatE domain. Length = 161

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 53 SLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
          + P+I+ N+    + LV V   G LG   +A   LA  
Sbjct: 7  AWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQ 44

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
          P I+AN+    + LV   F GHLG ++LA  +L +S
Sbjct: 1  PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSS 36

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS-WA 92
           EA+  +  +LP+++A V+  A+  V  + AG +   +LA   +  S W 
Sbjct: 9  SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL 58

Length = 456

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.63
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.46
PRK10189	478	MATE family multidrug exporter; Provisional	99.43
PRK00187	464	multidrug efflux protein NorA; Provisional	99.41
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.34
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.31
PRK01766	456	multidrug efflux protein; Reviewed	99.3
PRK00187	464	multidrug efflux protein NorA; Provisional	99.0
PRK01766	456	multidrug efflux protein; Reviewed	98.94
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	98.8
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.65
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.53
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.47
PRK10189	478	MATE family multidrug exporter; Provisional	98.46
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.46
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.4
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.01
PRK15099	416	O-antigen translocase; Provisional	97.88
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	97.8
TIGR01695	502	mviN integral membrane protein MviN. This model re	97.61
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	97.5
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.29
PRK10459	492	colanic acid exporter; Provisional	97.06
COG2244	480	RfbX Membrane protein involved in the export of O-	96.58
COG0728	518	MviN Uncharacterized membrane protein, putative vi	96.19
PRK15099	416	O-antigen translocase; Provisional	95.79
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	95.05
KOG1347	473	consensus Uncharacterized membrane protein, predic	93.69
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	89.64
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	85.54

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.63  E-value=5e-15  Score=129.59  Aligned_cols=107  Identities=19%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-H--Hhhhc------------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-G--FDFTK------------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-~--~si~~------------g~~~~  106 (155)
                      ++++.|.++++|+|++++|++|.+++++|++|+||+|++++||++++++++++. .  .++..            ||+++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            366999999999999999999999999999999999999999999999999752 1  11111            67777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +++...++.++.+  .++++++++.+++.+++  ++++|.++++.+
T Consensus        92 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~l--l~~l~~~~~v~~  133 (455)
T COG0534          92 AKRVLGQGLLLAL--LLGLLLAILLLFFAEPL--LRLLGAPAEVLE  133 (455)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHcCCCHhHHH
Confidence            7778788766543  44667789999999999  999998887543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.46  E-value=9.6e-13  Score=114.51  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHH---H--HHhhhc----------CChhH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL-GDLELAGATLANSWACV---T--GFDFTK----------TNRTW  106 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L-G~~aLAAv~la~~i~~i---~--~~si~~----------g~~~~  106 (155)
                      ++|.|+++++++|++++|+++.+++++|++|+||+ |+.++||+++++++.++   .  +++...          |++++
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   84 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA   84 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            45899999999999999999999999999999999 57789999999887753   1  122111          67777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +++...++..+.+  .++++...+.+.+.+++  ++++|+||++.+
T Consensus        85 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l--l~~~g~~~~v~~  126 (441)
T PRK10367         85 LARALVQPLLLAL--GAGALIALLRTPLIDLA--LHIVGGSEAVLE  126 (441)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence            7888777766543  34555667888889999  999999998764

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.43  E-value=2.4e-12  Score=113.16  Aligned_cols=106  Identities=19%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWE  107 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~  107 (155)
                      ....|+++++++|++++++++.+++++|++|+||+|+.++||+++++++.++.   ..++..            |+++++
T Consensus        25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~  104 (478)
T PRK10189         25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRA  104 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            34599999999999999999999999999999999999999999999987651   112211            677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccC--Cchhhhc
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRG--SDPIEFN  152 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g--~~~~v~~  152 (155)
                      +++.+++..+..  .++++.+.+.+++.+++  +++++  +|+++.+
T Consensus       105 ~~~~~~~l~~~~--~~~~~~~~l~~~~~~~l--l~l~~~~~~~~v~~  147 (478)
T PRK10189        105 RAAARQSLVIMT--LFAVLLAVLIHFFGEQI--IDLVAGDATPEVKA  147 (478)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHhHHHH--HHHHhCCCChHHHH
Confidence            888888765543  34555677888899999  99984  7888764

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.41  E-value=3.8e-12  Score=111.10  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~  106 (155)
                      ++++.|+++++++|++++++++.+++++|++|+||+|+.++||+++++++++++   .+++..            |++++
T Consensus         5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~   84 (464)
T PRK00187          5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG   84 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            367999999999999999999999999999999999999999999999987652   122211            67778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhcc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNT  153 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~~  153 (155)
                      +++...++..+.+.+  +++.+++ +++.+++  ++++++||++.+.
T Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i--l~l~~~~~ev~~~  126 (464)
T PRK00187         85 ATRLAQAGLWLAWLL--ALVAALL-LWNLKPL--LLLFGQAPQNVDA  126 (464)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHH-HHHHHHH--HHHcCCCHHHHHH
Confidence            888887776655333  3433334 4467999  9999999998753

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.34  E-value=7.5e-12  Score=110.66  Aligned_cols=105  Identities=32%  Similarity=0.394  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHhhhc----------------CChhH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTK----------------TNRTW  106 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~~~si~~----------------g~~~~  106 (155)
                      +.|.|+++++|.|+++.++.+++.+++|++|+||+|+.++|++++++++.+.+++++..                ++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            57999999999999999999999999999999999999999999999999987666655                57788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      .+.+.+++..++..   ..++....|.+.+||  +.++||||++..
T Consensus       104 lg~~lqrs~~~l~~---~~~~~~~l~~~~~~i--l~~lgq~~~i~~  144 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLV---QGLPISLLILNSEPI--LLLLGQDPDISR  144 (473)
T ss_pred             hhHHHHHHHHHHHH---HHHHHHHHHHccHHH--HHHhCCChhHHH
Confidence            88888888766533   345778999999999  999999998864

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.31  E-value=4.2e-11  Score=104.05  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHH-H--Hhhhc------------CChhHHH
Q 037145           45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL-GDLELAGATLANSWACVT-G--FDFTK------------TNRTWEG  108 (155)
Q Consensus        45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L-G~~aLAAv~la~~i~~i~-~--~si~~------------g~~~~~~  108 (155)
                      -.|.++++++|++++++++.+++++|++|+||+ |++++||+++++++.++. +  .++..            |++++++
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~   89 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAK   89 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHH
Confidence            678899999999999999999999999999995 999999999999987641 1  12211            6777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          109 LSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       109 ~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +...++..+..  .++++.+++.+.+.+++  +.++++|+++.+
T Consensus        90 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--l~l~~~~~~~~~  129 (453)
T PRK09575         90 RILTTGLLLLL--LLGPIVSVILFLFADDF--LRAQGAEGRTLE  129 (453)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHcCCChhhHH
Confidence            88777766643  33555678888899999  999999987754

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.30  E-value=5.3e-11  Score=102.81  Aligned_cols=110  Identities=16%  Similarity=0.182  Sum_probs=86.0

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-----HHhhhc----------CC
Q 037145           39 EVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-----GFDFTK----------TN  103 (155)
Q Consensus        39 ~~~~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-----~~si~~----------g~  103 (155)
                      +.+++++.|+++++++|++++++.+.+++++|++|+||+|+.++||++++.++.++.     +++...          |+
T Consensus         4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~   83 (456)
T PRK01766          4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR   83 (456)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            344678999999999999999999999999999999999999999999998876531     121111          56


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          104 RTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       104 ~~~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      ++++++...++..+.+  .++++.+.+.+.+.+++  +.+++.||++.+
T Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--~~l~~~~~~~~~  128 (456)
T PRK01766         84 RERIAHQVRQGLWLAL--FLSVLIMLVLYNAVPPI--LNMMNLEPEVAD  128 (456)
T ss_pred             hHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHH--HHHcCCCHHHHH
Confidence            6777777777665543  33455567778888999  999999988653

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.00  E-value=6.6e-09  Score=90.78  Aligned_cols=100  Identities=15%  Similarity=0.047  Sum_probs=80.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~  106 (155)
                      .+++.|+++++++|+.++++++....++|+.|+||+|+.++||.++++++..+   +..++..            |++++
T Consensus       231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~  310 (464)
T PRK00187        231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE  310 (464)
T ss_pred             CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            35689999999999999999999999999999999999999999999998764   2222222            66677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccC
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRG  145 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g  145 (155)
                      +.++..++..+..  .++++.+++++.+.+++  ++++.
T Consensus       311 ~~~~~~~~l~~~~--~~~~~~~~~~~~f~~~i--~~~ft  345 (464)
T PRK00187        311 ARRAGRVGIGFGA--VVMLLFAGLFWLLPEAI--IGLFL  345 (464)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHc
Confidence            7777777655543  33555677888999999  99884

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.94  E-value=1.5e-08  Score=87.62  Aligned_cols=107  Identities=16%  Similarity=0.054  Sum_probs=85.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~  106 (155)
                      .+++.|+++++++|.+++++++.....+|+.+++++|+.++||.++++++.++.   ..++..            |+++.
T Consensus       234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~  313 (456)
T PRK01766        234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD  313 (456)
T ss_pred             CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            357899999999999999999999999999999999999999999999887642   112211            67677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +.+...++..+.+  .++++.+.+.+.+.+++  ++++++||++.+
T Consensus       314 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--~~lf~~d~~v~~  355 (456)
T PRK01766        314 ARQYAYIGLAVGL--GMALLTAIFLVLFREQI--ALLYTDDPEVVA  355 (456)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence            7777776655543  33555678888899999  999999998754

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=98.80  E-value=7.4e-09  Score=76.71  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHHHHHHHHHHHHHH
Q 037145           55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWEGLSFESFSVFLT  119 (155)
Q Consensus        55 Piil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~~~~~~~~~~ll~  119 (155)
                      |++++++++.+.+++|+.++||+|++++||.+++.++..+.   ..++..            +|++++.+...+...+..
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            99999999999999999999999999999999999988752   122221            677777777777766543


Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          120 NLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       120 ~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      .  ++++.+++.+.+.+++  +++++.|+++.+
T Consensus        81 ~--~~~~~~~~~~~~~~~i--~~~f~~~~~~~~  109 (162)
T PF01554_consen   81 I--IGLLLSLVLLLFSEFI--LSLFGNDPEVIE  109 (162)
T ss_dssp             H--HHHHHHHHHHHHHHCC--HCTSSSTTCCHH
T ss_pred             h--cccchhhhhhhHHHHH--HHHhhhhHHHHH
Confidence            3  4566677889999999  999999998654

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.65  E-value=5.8e-07  Score=73.97  Aligned_cols=107  Identities=16%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-----HHhhhc----------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-----GFDFTK----------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-----~~si~~----------g~~~~  106 (155)
                      .+++.|++++.++|.++.+++......+|+.+++++|..++++-+.+..+..+.     +++...          |+++.
T Consensus       211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  290 (342)
T TIGR00797       211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKR  290 (342)
T ss_pred             CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            467899999999999999999999999999999999999999888887766531     111111          56677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      ..+...++..+...  +++..+...+++.+++  ++++..||++.+
T Consensus       291 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~i--~~~~~~~~~~~~  332 (342)
T TIGR00797       291 AKEVARVALKLSLL--LGLVLAIILILFREFI--ARLFTNDPEVLE  332 (342)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence            77777766555433  3444567788889999  999999998764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.53  E-value=1.4e-06  Score=76.49  Aligned_cols=108  Identities=19%  Similarity=0.157  Sum_probs=87.9

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChh
Q 037145           41 LDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRT  105 (155)
Q Consensus        41 ~~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~  105 (155)
                      .+++..|+++++++|..++++.......+=+.+++++|++++||-+++.++..+   ..+++..            |+.+
T Consensus       235 ~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~  314 (455)
T COG0534         235 PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYK  314 (455)
T ss_pred             CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            357899999999999999999999999999999999999999999999988764   2222222            5667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      ++.+.......+.+  .++++..++.+++.+++  .++|..||++.+
T Consensus       315 ~a~~~~~~~~~~~~--~~~~~~~~i~~~f~~~i--~~lF~~~~~v~~  357 (455)
T COG0534         315 RARRAARLALKLSL--LIALLIALLLLLFREPI--ISLFTTDPEVIA  357 (455)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHCCCHHHHH
Confidence            77777766655543  34566788999999999  999999888765

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.47  E-value=3.1e-06  Score=73.84  Aligned_cols=105  Identities=10%  Similarity=-0.077  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhHHH
Q 037145           44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTWEG  108 (155)
Q Consensus        44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~~~  108 (155)
                      +..|+++++++|..+++.+......+=+.+++++|+.++||-+++.++..+   ...++..            |+.+++.
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~  308 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL  308 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence            367999999999999999999999999999999999999999999988754   1222222            5666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          109 LSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       109 ~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +.......+.  +.++++..++.+.+++++  ..+|..|+++.+
T Consensus       309 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i--~~lFt~d~~v~~  348 (441)
T PRK10367        309 DVWRAACRQS--GIVALLFSLVYALAGEHI--IALLTSLPQIQQ  348 (441)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence            6666554443  333555677888899999  999999988765

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.46  E-value=3.5e-06  Score=74.26  Aligned_cols=107  Identities=14%  Similarity=0.053  Sum_probs=82.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTW  106 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~  106 (155)
                      +++..|+++++++|..++++....-.++-+.+++++|+.++||-+++.++..+   ..+++..            |+.++
T Consensus       254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~  333 (478)
T PRK10189        254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQ  333 (478)
T ss_pred             CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            35789999999999999999999999999999999999999999999887653   1222222            55566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      +.+.......+  .+.++++.+++.+.+++++  ..+|..|+++.+
T Consensus       334 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~i--~~lFt~d~~v~~  375 (478)
T PRK10189        334 AERQLRHVFWL--STLGLTAIAWLSAPFAGLL--ASFYTQDPDVKH  375 (478)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHcCCCHHHHH
Confidence            66665555443  3333555677888899999  999999998765

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.46  E-value=2.2e-06  Score=70.48  Aligned_cols=93  Identities=24%  Similarity=0.248  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHHHHHHHHHHHHHH
Q 037145           55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWEGLSFESFSVFLT  119 (155)
Q Consensus        55 Piil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~~~~~~~~~~ll~  119 (155)
                      |+++++++...++.+|++++|++|++++++.+++.++.++.   ..++..            ++++++.+...+...+..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999998877642   112211            455566666666555543


Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145          120 NLKVALSSAAMVWVKILQIDNLEQRGSDPIEF  151 (155)
Q Consensus       120 ~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~  151 (155)
                        .++++.+++.+++.+++  .++++.|++..
T Consensus        81 --~~~~~~~~~~~~~~~~i--~~~~~~~~~~~  108 (342)
T TIGR00797        81 --LLGLPVLLVGYFFIDPL--LSLMGADGEVA  108 (342)
T ss_pred             --HHHHHHHHHHHHhHHHH--HHHhCCCHHHH
Confidence              33555677888899999  99998776654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.40  E-value=5.9e-06  Score=71.92  Aligned_cols=107  Identities=7%  Similarity=-0.058  Sum_probs=82.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-hhHHHHHHHHHHHHH---H--HHhhhc----------CChh
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD-LELAGATLANSWACV---T--GFDFTK----------TNRT  105 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~-~aLAAv~la~~i~~i---~--~~si~~----------g~~~  105 (155)
                      +++..|+++++++|..++++.......+-..+++++|+ .++||.++++++..+   .  +++...          |+++
T Consensus       229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~  308 (453)
T PRK09575        229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYD  308 (453)
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChH
Confidence            35678999999999999999998888888889999995 589999999887764   1  222221          6777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCC-chhhhc
Q 037145          106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGS-DPIEFN  152 (155)
Q Consensus       106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~-~~~v~~  152 (155)
                      ++.+...++..+...  .+++.+++.+.+.+++  +++++. ||++.+
T Consensus       309 ~~~~~~~~~l~l~~~--~~~~~~~~~~~~~~~i--~~lf~~~~~~v~~  352 (453)
T PRK09575        309 NIKKLLKLAMKVTVL--AGIAWVLLLNLFPETM--IALFNSGDSELIA  352 (453)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHH--HHhHcCCChHHHH
Confidence            777777776655433  3555677888899999  999985 677654

>TIGR01695 mviN integral membrane protein MviN

Probab=98.01  E-value=0.00013  Score=63.21  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH----HHhhhc------------CChhH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT----GFDFTK------------TNRTW  106 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~----~~si~~------------g~~~~  106 (155)
                      +++.|++++.++|..++++.......+|+++.+++|..++++.+.+..+..+.    ..++..            |++++
T Consensus       219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~  298 (502)
T TIGR01695       219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE  298 (502)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            46889999999999999999999999999998889999999999988776531    111111            45666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCC
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGS  146 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~  146 (155)
                      ..+...+...+..  .+++..++..+.+++++  .+++..
T Consensus       299 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~i--i~l~~~  334 (502)
T TIGR01695       299 LRDLLNQGIRLSL--LLTIPSSFGLLILSIPI--VSLLFE  334 (502)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHhc
Confidence            6666666554432  23444567788889999  876643

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=97.88  E-value=0.00042  Score=59.22  Aligned_cols=103  Identities=14%  Similarity=-0.010  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHH----HHHHhhhc---------CChhHH
Q 037145           42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAG-HLGDLELAGATLANSWAC----VTGFDFTK---------TNRTWE  107 (155)
Q Consensus        42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG-~LG~~aLAAv~la~~i~~----i~~~si~~---------g~~~~~  107 (155)
                      +++..|++++.++|.+++++........|..+++ ++|++++++-+.+..+..    ....++..         +++++.
T Consensus       210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~~~  289 (416)
T PRK15099        210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDI  289 (416)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence            4667899999999999999999999999999997 799999999999988743    11112221         444554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCch
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDP  148 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~  148 (155)
                      .+...+......  .+.+..++..+++++++  .+++..++
T Consensus       290 ~~~~~~~~~~~~--~~~~~~~~~~~l~a~~i--i~l~~g~~  326 (416)
T PRK15099        290 TREIVKALKFVL--PAVAAASFTVWLLRDFA--IWLLFSNK  326 (416)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhccHH
Confidence            444444433332  22343456677889999  88765554

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=97.80  E-value=0.00024  Score=61.32  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH-H---Hhhhc------------CChhHHHHHHHH
Q 037145           51 LFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT-G---FDFTK------------TNRTWEGLSFES  113 (155)
Q Consensus        51 ~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~-~---~si~~------------g~~~~~~~~~~~  113 (155)
                      |=+.|.+++++++.+++++|+++++| +|+++++++++++++..++ .   +|+..            +++++.++...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~   82 (488)
T TIGR02900         3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKV   82 (488)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHH
Confidence            55899999999999999999999999 6999999999999877642 1   12221            344555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhh
Q 037145          114 FSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIE  150 (155)
Q Consensus       114 ~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v  150 (155)
                      ...+.  +.++++.+.+.+.+.+++  ..+++.+++.
T Consensus        83 ~~~l~--l~~~~~~~~l~~~~~~~i--~~~~~~~~~~  115 (488)
T TIGR02900        83 SLIFT--LIWSLIVTAIVFLLSPFI--ASTLLKDERS  115 (488)
T ss_pred             HHHHH--HHHHHHHHHHHHHhhHHH--HHHHcCChhH
Confidence            55443  233455566777778888  7766666543

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=97.61  E-value=0.00089  Score=58.05  Aligned_cols=99  Identities=9%  Similarity=-0.057  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhH-HHHHHHHHHHHHH-HH----hhhc-------C--Ch-hHHHHHH
Q 037145           49 QVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLEL-AGATLANSWACVT-GF----DFTK-------T--NR-TWEGLSF  111 (155)
Q Consensus        49 ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aL-AAv~la~~i~~i~-~~----si~~-------g--~~-~~~~~~~  111 (155)
                      ++|=+.=..++++++..++++|++++|| +|++++ ++++++.++.+++ .+    ++..       +  ++ +++++..
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~   81 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAF   81 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3455566788999999999999999999 899999 7999999887542 11    1111       1  22 2333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc--CCchhh
Q 037145          112 ESFSVFLTNLKVALSSAAMVWVKILQIDNLEQR--GSDPIE  150 (155)
Q Consensus       112 ~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~--g~~~~v  150 (155)
                      .+...+... ..+++..++.+++++++  ..++  |.+++.
T Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~~~~~i--~~~~~~g~~~~~  119 (502)
T TIGR01695        82 ANTVTTLLI-LSLLLVVLIGIFFAPFV--ISLLAPGFADET  119 (502)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHhcCCCCccH
Confidence            444333322 22333467788889999  8877  556554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=97.50  E-value=0.0017  Score=56.02  Aligned_cols=103  Identities=9%  Similarity=-0.050  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C---hhhHHHHHH----HHHHHHHH-----HHhhhc-----
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL----G---DLELAGATL----ANSWACVT-----GFDFTK-----  101 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L----G---~~aLAAv~l----a~~i~~i~-----~~si~~-----  101 (155)
                      +++.|++++.++|..++++.....+.+|++++|+.    |   ..+.+.+|.    +.++..+.     +++...     
T Consensus       221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s  300 (488)
T TIGR02900       221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS  300 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999984    2   222333332    22222211     111111     


Q ss_pred             -----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchh
Q 037145          102 -----TNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPI  149 (155)
Q Consensus       102 -----g~~~~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~  149 (155)
                           |++++..+...+...+..  .+++..+..++.+++++  +.++..+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--i~~~~~~~~  349 (488)
T TIGR02900       301 EAMAKKNYSSIEKRINQAIKISL--LLGLITTVILLVIPDEL--GALFYGRPD  349 (488)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhcCCCc
Confidence                 445555555555544432  23444566778888999  887654443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=97.29  E-value=0.0067  Score=53.22  Aligned_cols=98  Identities=11%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH----HHHhhhc------------CChhHH
Q 037145           44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV----TGFDFTK------------TNRTWE  107 (155)
Q Consensus        44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i----~~~si~~------------g~~~~~  107 (155)
                      ++.|++++...|.+++...+....++|..+.+++++-.+++...++.++.+    ++.++..            |+.++.
T Consensus       195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~  274 (451)
T PF03023_consen  195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF  274 (451)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            469999999999999999999999999999999999999999999998864    2222222            666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ  143 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l  143 (155)
                      .+...++....+.+  .+..++..+.+++|+..+.+
T Consensus       275 ~~~~~~~l~~~~~i--~iP~~~~~~~~a~~iV~llf  308 (451)
T PF03023_consen  275 RKTLRKALRLILLI--LIPASIGLIVLAEPIVRLLF  308 (451)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHH
Confidence            77777765554333  34445788889999933333

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10459 colanic acid exporter; Provisional

Probab=97.06  E-value=0.0088  Score=52.06  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH----H--H-hhh-------cCChhHH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT----G--F-DFT-------KTNRTWE  107 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~----~--~-si~-------~g~~~~~  107 (155)
                      +++.|.+++.++|.+.+++....+.-+|++++|+ +|+.+++.-+.+..+..+.    .  + .+.       .++++..
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~  282 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL  282 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence            5678999999999999999999999999999999 5788888888887766431    1  1 111       1454555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc-cCC
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ-RGS  146 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l-~g~  146 (155)
                      .+...+...+...  +++..+..+...++++  +.+ +|.
T Consensus       283 ~~~~~~~~~~~~~--~~~p~~~~l~~~a~~i--i~ll~g~  318 (492)
T PRK10459        283 RVGFLKLLSVLGI--INFPLLLGLMVVSNNF--VPLVFGE  318 (492)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHhHHH--HHHhcCh
Confidence            5555554443322  2333345566777888  654 453

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=96.58  E-value=0.022  Score=49.30  Aligned_cols=101  Identities=12%  Similarity=0.175  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH---H--HHhh-h----c-----CChhH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV---T--GFDF-T----K-----TNRTW  106 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i---~--~~si-~----~-----g~~~~  106 (155)
                      ++..|++++.++|..++.+....++-+|++++|+ +|+.+++--+.+..+...   .  .++. +    .     |+++.
T Consensus       209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~  288 (480)
T COG2244         209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA  288 (480)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            5799999999999999999999999999999998 465555544433333322   1  1111 1    1     44444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc-cCCc
Q 037145          107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ-RGSD  147 (155)
Q Consensus       107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l-~g~~  147 (155)
                      ..+...+...+...  +++...+..+.+++|+  +.. +|.+
T Consensus       289 ~~~~~~~~~~~~~~--~~~p~~~~l~~~~~~~--i~~~fg~~  326 (480)
T COG2244         289 LKKLLRQSLKLLLL--ISIPALLGLLLLAPPI--ITLLFGEK  326 (480)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh--heeecCCc
Confidence            44544444433322  2344456777777777  664 5554

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=96.19  E-value=0.091  Score=47.56  Aligned_cols=95  Identities=13%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH----HHHhhhc------------CChhHH
Q 037145           44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV----TGFDFTK------------TNRTWE  107 (155)
Q Consensus        44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i----~~~si~~------------g~~~~~  107 (155)
                      .+.|++.+...|++++...+-...++|+.+.+.+.+-.++....++-++.+    +++++..            ++.+..
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            699999999999999999999999999999999999999999999988864    3444433            444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDN  140 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~  140 (155)
                      .....++.-+..  .+.+..+..++.+++|+..
T Consensus       309 ~~~l~~~i~l~l--ll~lP~~~~l~~la~piv~  339 (518)
T COG0728         309 LKLLDWGLRLTL--LLTLPASAGLLVLAEPIVS  339 (518)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            444455544432  3345455688888999933

>PRK15099 O-antigen translocase; Provisional

Probab=95.79  E-value=0.26  Score=42.08  Aligned_cols=90  Identities=11%  Similarity=-0.007  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH----HHhhhc----------CChhHHHHHHHHHHHHHHH
Q 037145           56 MIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT----GFDFTK----------TNRTWEGLSFESFSVFLTN  120 (155)
Q Consensus        56 iil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~----~~si~~----------g~~~~~~~~~~~~~~ll~~  120 (155)
                      ...++++....++.-+..+.| +|+++.+.++...++..++    .+++..          +++++.++.......+.  
T Consensus        10 ~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~--   87 (416)
T PRK15099         10 TAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMV--   87 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHH--
Confidence            345677777777777878888 7999999999888877642    222211          34444555555544443  


Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhccCCchh
Q 037145          121 LKVALSSAAMVWVKILQIDNLEQRGSDPI  149 (155)
Q Consensus       121 l~i~~i~~~~~~~~~~~I~~L~l~g~~~~  149 (155)
                      +..+++.+++++.+.+|+  +.+++.+|+
T Consensus        88 ~~~~~i~~~~~~~~~~~i--~~~~~~~~~  114 (416)
T PRK15099         88 LGFSTLLALVFLLAAAPI--SQGLFGHTD  114 (416)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhCCChh
Confidence            334566778889999999  988877775

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=95.05  E-value=0.11  Score=40.52  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV   94 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i   94 (155)
                      +++.|++++.++|..++++....++-.|.+++++ .|.++++--+.+.++...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~  253 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA  253 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999 577788888887777654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=93.69  E-value=1.2  Score=39.81  Aligned_cols=106  Identities=11%  Similarity=0.042  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh--hhHHHHHHHHHHHHH-----HHHhhhc----------CChh
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD--LELAGATLANSWACV-----TGFDFTK----------TNRT  105 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~--~aLAAv~la~~i~~i-----~~~si~~----------g~~~  105 (155)
                      .+..+.++++++|-.+-..++.-+.-+=.++.|.++.  .++++-+++......     .+++...          |+.+
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            5677789999999999999999999999999999985  578888887766643     2233221          4544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      .+..........  .+.++.+.+...+...+.+  .+.|..|+++.+
T Consensus       323 ~ar~~~~v~~~~--~~~~g~~~~~~~~~~r~~~--~~ift~~~ev~~  365 (473)
T KOG1347|consen  323 RARVSAKVALQT--SVAIGASLGTTLLACREVL--GQIFTNSKEVLD  365 (473)
T ss_pred             hhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHH
Confidence            444444333332  3445666777888888999  999998888765

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=89.64  E-value=1.7  Score=33.51  Aligned_cols=47  Identities=15%  Similarity=0.313  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH
Q 037145           48 NQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV   94 (155)
Q Consensus        48 ~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i   94 (155)
                      ++++.+.|..+++++....+-.|.++++. +|.++++.-+.+..+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~  231 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASL  231 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999 898889888888877663

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=85.54  E-value=17  Score=31.49  Aligned_cols=51  Identities=14%  Similarity=0.038  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh---hhHHHHHHHHHHHHHH
Q 037145           45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD---LELAGATLANSWACVT   95 (155)
Q Consensus        45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~---~aLAAv~la~~i~~i~   95 (155)
                      .++.+.+.-+|+.++.+...+---+=+.-+.|-.+   +.+|+.|++.++.-++
T Consensus         9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~   62 (345)
T PF07260_consen    9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF   62 (345)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            67889999999999988766555444555555332   2399999999988653

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSW 91
          +EA N +  + P+++A+V+   +  V  + AG +  +++A  ++A S 
Sbjct: 9  KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 29/151 (19%)

Query: 8   DNHTKPLLGTGD--NINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFS---------LPM 56
           +   K LL T      +  +               L  +E K+  L           LP 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPR 320

Query: 57  IVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTKT-NRTWEGLS----- 110
            V   +    P    + A  + D    G    ++W  V     T     +   L      
Sbjct: 321 EVLTTN----PRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 111 --FESFSVFLTNLKVALSSAAMVWVKILQID 139
             F+  SVF  +  +     +++W  +++ D
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.08
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	98.44

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.08  E-value=8.1e-10  Score=92.21  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhh--hc----------CChhHH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDF--TK----------TNRTWE  107 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si--~~----------g~~~~~  107 (155)
                      +++.|+++++++|++++++++.+++++|++++||+|++++++.++++++..+.   ..++  ..          +++++.
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            67999999999999999999999999999999999999999999999986541   1121  11          566777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN  152 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~  152 (155)
                      .+...+...+...+  +++ ..+++++.+++  +.+++.++++.+
T Consensus        88 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~i--~~~~~~~~~~~~  127 (460)
T 3mkt_A           88 PFEVHQGLILALLV--SVP-IIAVLFQTQFI--IRFMDVEEAMAT  127 (460)
T ss_dssp             HHHHHHHHHHHHHH--HHH-HHHHHHHHHTT--CSSCSSTTHHHH
T ss_pred             HHHHHHHHHHHHHH--HHH-HHHHHHhHHHH--HHHhCCCHHHHH
Confidence            77777765554332  343 33457889999  999998887543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=98.44  E-value=5e-07  Score=75.19  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHH
Q 037145           43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWE  107 (155)
Q Consensus        43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~  107 (155)
                      +++.|+++++++|..++++.......+|+++++++|+.++|+-++++++..+.   ..++..            |++++.
T Consensus       234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~  313 (460)
T 3mkt_A          234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA  313 (460)
T ss_dssp             TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            45788899999999999999999999999999999999999999999987642   112111            566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145          108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEF  151 (155)
Q Consensus       108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~  151 (155)
                      .+...+...+...  +++..+++.+++++++  ..++..|+++.
T Consensus       314 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i--~~l~~~~~~~~  353 (460)
T 3mkt_A          314 AIAANVGLMTGLA--TACITALLTVLFREQI--ALLYTENQVVV  353 (460)
T ss_dssp             TTHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HTCSSCCSTTH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHcCCCHHHH
Confidence            6666665444322  3445567888899999  99988777653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00