Citrus Sinensis ID: 037178

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MPLYNCSSACLWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Secondary Structure (PSIPRED)
cccccHHHHcccccccHHHHHHccccccccEEEcccHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHccccccHHHHHHHHHHHccccccccEEHHHHHHHHHHHccHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mplyncssaclwsplfpslrqkksqpqfpatVIQRNKHSLRSIFKeksslslsaktnnastqGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQAcghekdieIGKRVHELVSASTQFSNDFIINTRLITMYslcgfpldsrrvfdslktRNLFQWNALVSGFTKNELYTDVLSIFVElssdtelkpdnftfpcvikacggiadvgfgsgvHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVmpernlvsWNSIICgfsengfsceSFDLLIKMMgceegfipdVITVVTVLP
Flexible Loop (DISEMBL)
MPLYNCSSACLWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Low Complexity Region (SEG)
MPLYNCSSACLWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Disordered region (IsUnstruct)
***YNCSSACLWSPLF**********************************************GLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTV**
Disordered Region (DISOPRED)
**LYN**SACLWS************PQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Disordered Region (DISEMBL)
MPLYNCSSACLWSPLFPSLR*********ATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Disordered Region (DISPRO)
MPLYNCSSACLWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLYNCSSACLWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q0WN60	970	Pentatricopeptide repeat-	yes	no	0.790	0.253	0.529	5e-76
Q9SB36	527	Pentatricopeptide repeat-	no	no	0.655	0.387	0.352	5e-36
Q9FM64	830	Pentatricopeptide repeat-	no	no	0.774	0.290	0.342	1e-34
Q9FXH1	894	Pentatricopeptide repeat-	no	no	0.864	0.300	0.294	8e-33
Q9M9E2	866	Pentatricopeptide repeat-	no	no	0.765	0.274	0.327	6e-32
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.659	0.294	0.314	6e-30
Q9SS60	882	Pentatricopeptide repeat-	no	no	0.614	0.216	0.357	9e-30
A8MQA3	595	Pentatricopeptide repeat-	no	no	0.659	0.344	0.336	1e-29
Q0WNP3	617	Pentatricopeptide repeat-	no	no	0.655	0.330	0.336	4e-29
Q9CAA8	743	Putative pentatricopeptid	no	no	0.662	0.277	0.319	2e-28

>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2

 Score =  284 bits (727), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 191/257 (74%), Gaps = 11/257 (4%)

Query: 65  HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 116
           HFL+ I+  CE +  L+K+   +QE + + +        ++EA G+LLQA G  KDIE+G
Sbjct: 45  HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 103

Query: 117 KRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 176
           +++H+LVS ST+  ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 104 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 163

Query: 177 NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVF 236
           NELY +VL  F+E+ S T+L PD+FT+PCVIKAC G++DVG G  VHG+  K GL+ DVF
Sbjct: 164 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 223

Query: 237 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM--G 294
           V NAL++ YG   FV + ++LF++MPERNLVSWNS+I  FS+NGFS ESF LL +MM   
Sbjct: 224 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283

Query: 295 CEEGFIPDVITVVTVLP 311
            +  F+PDV T+VTVLP
Sbjct: 284 GDGAFMPDVATLVTVLP 300

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 124/210 (59%), Gaps = 6/210 (2%)

Query: 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
           LL+ C   + I+ G RVH L+       N+  I+++L+ +Y+ CG+   +  VFD +  R
Sbjct: 98  LLETCYSLRAIDHGVRVHHLIPPYL-LRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKR 156

Query: 163 NL--FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220
           +   F WN+L+SG+ +   Y D ++++ +++ D  +KPD FTFP V+KACGGI  V  G 
Sbjct: 157 DSSPFAWNSLISGYAELGQYEDAMALYFQMAEDG-VKPDRFTFPRVLKACGGIGSVQIGE 215

Query: 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENG 280
            +H    K G   DV+V NAL+ MY KC  + +   +F+++P ++ VSWNS++ G+  +G
Sbjct: 216 AIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHG 275

Query: 281 FSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
              E+ D+   M+  + G  PD + + +VL
Sbjct: 276 LLHEALDIFRLMV--QNGIEPDKVAISSVL 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 141/248 (56%), Gaps = 7/248 (2%)

Query: 66  FLQEITTLCEESKSLNKALSLLQE-NLHNADL-KEATGVLLQACGHEKDIEIGKRVHELV 123
           +   +++LC+  + + +ALSL+ E +  N  +  E  G +LQ C +E+D+  GK++H  +
Sbjct: 38  YFHRVSSLCKNGE-IKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARI 96

Query: 124 SASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTD 182
             +  F + +  I T+L+  Y+ C     +  +F  L+ RN+F W A++    +  L   
Sbjct: 97  LKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEG 156

Query: 183 VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242
            L  FVE+  + E+ PDNF  P V KACG +    FG GVHG   K GL   VFV+++L 
Sbjct: 157 ALMGFVEML-ENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLA 215

Query: 243 AMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302
            MYGKC  +++  K+F+ +P+RN V+WN+++ G+ +NG + E+  L   M   ++G  P 
Sbjct: 216 DMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMR--KQGVEPT 273

Query: 303 VITVVTVL 310
            +TV T L
Sbjct: 274 RVTVSTCL 281

Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 156/289 (53%), Gaps = 20/289 (6%)

Query: 26  PQFPATVIQ-------RNKHSLRSIFKEKS-SLSLSAKTNNASTQGLHFLQEITTLCEES 77
           P FP T +         N   L    ++K+ S +   + N    +   +L    +L E  
Sbjct: 7   PSFPKTFLNYQTPAKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAE 66

Query: 78  KSLNKALSLLQENLHNADLKEATGV-LLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN 136
           K+L+   SL Q+    + +K +T + LL++C     I +G+ +H      T+   D  + 
Sbjct: 67  KALD---SLFQQG---SKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTE--PDVFVE 118

Query: 137 TRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL 196
           T+L++MY+ CG   D+R+VFDS++ RNLF W+A++  +++   + +V  +F  +  D  L
Sbjct: 119 TKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVL 178

Query: 197 KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK 256
            PD+F FP +++ C    DV  G  +H +  K+G+   + VSN+++A+Y KC  ++   K
Sbjct: 179 -PDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATK 237

Query: 257 LFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305
            F  M ER++++WNS++  + +NG   E+ +L+ +M   +EG  P ++T
Sbjct: 238 FFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEME--KEGISPGLVT 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 69  EITTLCEESKSLNKALSLLQ--ENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAS 126
           ++  LC   K L +A+ LL   + L  A  ++    L++ C  ++  E G +V+  ++ S
Sbjct: 65  QLHGLCANGK-LEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYS-IALS 122

Query: 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI 186
           +  S    +    + M+   G  +D+  VF  +  RNLF WN LV G+ K   + + + +
Sbjct: 123 SMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCL 182

Query: 187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246
           +  +     +KPD +TFPCV++ CGGI D+  G  VH    + G   D+ V NALI MY 
Sbjct: 183 YHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYV 242

Query: 247 KCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITV 306
           KC  V+    LF+ MP R+++SWN++I G+ ENG   E  +L   M G      PD++T+
Sbjct: 243 KCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVD--PDLMTL 300

Query: 307 VTVL 310
            +V+
Sbjct: 301 TSVI 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 40/245 (16%)

Query: 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
           ++ AC     I++G+ VH  V  + +  ND I++   + MY+ C    ++R +FDS+  R
Sbjct: 259 VISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318

Query: 163 NLF-------------------------------QWNALVSGFTKNELYTDVLSIFVELS 191
           N+                                 WNAL++G+T+N    + LS+F  L 
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLK 378

Query: 192 SDTELKPDNFTFPCVIKACGGIADVGFGSGVH------GMAAKMGLIGDVFVSNALIAMY 245
            ++ + P +++F  ++KAC  +A++  G   H      G   + G   D+FV N+LI MY
Sbjct: 379 RES-VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437

Query: 246 GKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305
            KC  VEE   +F  M ER+ VSWN++I GF++NG+  E+ +L  +M+  E G  PD IT
Sbjct: 438 VKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML--ESGEKPDHIT 495

Query: 306 VVTVL 310
           ++ VL
Sbjct: 496 MIGVL 500

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 5/196 (2%)

Query: 117 KRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFT 175
           +R+H LV +    S+DF  + +LI  YS    P  S  VF  +   +N++ WN+++  F+
Sbjct: 24  RRIHALVISLGLDSSDFF-SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFS 82

Query: 176 KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV 235
           KN L+ + L  + +L  ++++ PD +TFP VIKAC G+ D   G  V+     MG   D+
Sbjct: 83  KNGLFPEALEFYGKLR-ESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141

Query: 236 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGC 295
           FV NAL+ MY +   +    ++F+ MP R+LVSWNS+I G+S +G+  E+ ++  ++   
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN- 200

Query: 296 EEGFIPDVITVVTVLP 311
               +PD  TV +VLP
Sbjct: 201 -SWIVPDSFTVSSVLP 215

Arabidopsis thaliana (taxid: 3702)

>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 117/208 (56%), Gaps = 3/208 (1%)

Query: 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
           L++A     D+ +G+ +H +V  S  F +   +   L+ +Y+ CG    + +VFD +  +
Sbjct: 127 LIKAVTTMADVRLGETIHSVVIRSG-FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK 185

Query: 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222
           +L  WN++++GF +N    + L+++ E++S   +KPD FT   ++ AC  I  +  G  V
Sbjct: 186 DLVAWNSVINGFAENGKPEEALALYTEMNSKG-IKPDGFTIVSLLSACAKIGALTLGKRV 244

Query: 223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282
           H    K+GL  ++  SN L+ +Y +C  VEE   LF+ M ++N VSW S+I G + NGF 
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query: 283 CESFDLLIKMMGCEEGFIPDVITVVTVL 310
            E+ +L  K M   EG +P  IT V +L
Sbjct: 305 KEAIELF-KYMESTEGLLPCEITFVGIL 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
           +L+ACG    + +GK +H  +  ++   N +I +T L+ +Y  CG   D+  V   L +R
Sbjct: 391 ILRACGSVGALLLGKELHAQIIKNSIEKNVYIGST-LVWLYCKCGESRDAFNVLQQLPSR 449

Query: 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222
           ++  W A++SG +     ++ L    E+  +  ++P+ FT+   +KAC     +  G  +
Sbjct: 450 DVVSWTAMISGCSSLGHESEALDFLKEMIQEG-VEPNPFTYSSALKACANSESLLIGRSI 508

Query: 223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282
           H +A K   + +VFV +ALI MY KC FV E  ++F+ MPE+NLVSW ++I G++ NGF 
Sbjct: 509 HSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFC 568

Query: 283 CESFDLLIKMMGCEEGFIPDVITVVTVL 310
            E+  L+ +M    EGF  D     T+L
Sbjct: 569 REALKLMYRMEA--EGFEVDDYIFATIL 594

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160
           G +L ACG    I  GK++H  +   T F +   + + LI MY  C     ++ VFD +K
Sbjct: 274 GSVLPACGGLGAINEGKQIHACI-IRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 161 TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220
            +N+  W A+V G+ +     + + IF+++   + + PD++T    I AC  ++ +  GS
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR-SGIDPDHYTLGQAISACANVSSLEEGS 391

Query: 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENG 280
             HG A   GLI  V VSN+L+ +YGKC  +++  +LF  M  R+ VSW +++  +++ G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451

Query: 281 FSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
            + E+  L  KM+  + G  PD +T+  V+
Sbjct: 452 RAVETIQLFDKMV--QHGLKPDGVTLTGVI 479

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
224135349	924	predicted protein [Populus trichocarpa]	0.784	0.264	0.621	1e-88
225455746	881	PREDICTED: pentatricopeptide repeat-cont	0.672	0.237	0.701	1e-84
297734119	783	unnamed protein product [Vitis vinifera]	0.945	0.375	0.509	4e-81
449477503	990	PREDICTED: pentatricopeptide repeat-cont	0.881	0.276	0.534	2e-80
449441113	990	PREDICTED: pentatricopeptide repeat-cont	0.881	0.276	0.534	2e-80
18394615	970	pentatricopeptide repeat-containing prot	0.790	0.253	0.529	3e-74
6714305	1702	F15H18.4 [Arabidopsis thaliana]	0.790	0.144	0.529	4e-74
356519174	975	PREDICTED: pentatricopeptide repeat-cont	0.829	0.264	0.514	3e-70
297844796	953	pentatricopeptide repeat-containing prot	0.810	0.264	0.480	6e-70
58743498	968	Putative Putative Pentatricopeptide (PPR	0.890	0.286	0.439	1e-66

>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa] gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/251 (62%), Positives = 199/251 (79%), Gaps = 7/251 (2%)

Query: 66  FLQEITTLCEESKSLNKALSLLQENLHNA-----DLKEATGVLLQACGHEKDIEIGKRVH 120
           FLQEI  LCE + +L  AL L+Q +  NA       KEA G+LLQACG++KDIE G+R+H
Sbjct: 8   FLQEIAALCE-TDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLH 66

Query: 121 ELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY 180
           + VS ST + ND+++NTRLI MY++CG PLDSR VFD+++T+NL QWNALVSG+T+N LY
Sbjct: 67  KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLY 126

Query: 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNA 240
            DV+ +F++L SDT+ +PDNFTFP VIKACGGI DV  G  +HGM  KMGL+ DVFV NA
Sbjct: 127 GDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNA 186

Query: 241 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFI 300
           L+ MYGKC  V+E +K+F+ MPE NLVSWNS+IC FSENGFS +SFDLL++M+G EEG +
Sbjct: 187 LVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLG-EEGLL 245

Query: 301 PDVITVVTVLP 311
           PDV+TVVT+LP
Sbjct: 246 PDVVTVVTILP 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Vitis vinifera]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/211 (70%), Positives = 173/211 (81%)

Query: 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160
           GVLLQACG  KDIE+G+R+HE+VSASTQF NDF++NTR+ITMYS+CG P DSR VFD L+
Sbjct: 2   GVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61

Query: 161 TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220
            +NLFQWNA+VS +T+NEL+ D +SIF EL S TE KPDNFT PCVIKAC G+ D+G G 
Sbjct: 62  RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 121

Query: 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENG 280
            +HGMA KM L+ DVFV NALIAMYGKC  VEE VK+FE MPERNLVSWNSIICGFSENG
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 281 FSCESFDLLIKMMGCEEGFIPDVITVVTVLP 311
           F  ESF+   +M+  EE F+PDV T+VTVLP
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 211/312 (67%), Gaps = 18/312 (5%)

Query: 14  PLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKT---------NNASTQGL 64
           PL       ++   +  T   +NK+SL SIF   +SLSLSA+T         N+++ +  
Sbjct: 9   PLSWRSHHSRTTVFYRITRKSKNKYSLHSIFTPIASLSLSAQTRQTKSLSFANSSTNRQF 68

Query: 65  HFLQEITTLCEESKSLNKALSLLQEN-----LHNADLKEATGVLLQACGHEKDIEIGKRV 119
             L EI  LCE S +L +AL  LQ       L +A   EA GVLLQACG  KDIE+G+R+
Sbjct: 69  SSLHEIKKLCE-SGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRL 127

Query: 120 HELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNEL 179
           HE+VSASTQF NDF++NTR+ITMYS+CG P DSR VFD L+ +NLFQWNA+VS +T+NEL
Sbjct: 128 HEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNEL 187

Query: 180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSN 239
           + D +SIF EL S TE KPDNFT PCVIKAC G+ D+G G  +HGMA KM L+ DVFV N
Sbjct: 188 FEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGN 247

Query: 240 ALIAMYGKCAFVEEMVK-LFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEG 298
           ALIAMYGKC  VEE VK +F++M  + + SWN+++CG+++N    ++ DL ++M   + G
Sbjct: 248 ALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMT--DSG 305

Query: 299 FIPDVITVVTVL 310
             PD  T+ ++L
Sbjct: 306 LDPDWFTIGSLL 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 203/288 (70%), Gaps = 14/288 (4%)

Query: 37  KHSLRSIFKEKSS-LSLSAKTNNASTQG------LHFLQEITTLCEESKSLNKALSLLQE 89
           K+SL S    KSS   +SA+T +  ++       L  L+EI+ LCE +  LN AL  LQ 
Sbjct: 35  KNSLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCE-AGDLNGALDFLQR 93

Query: 90  NLHN------ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143
              N      A  KEA G+LLQ CG  K++EIG+++ E++  S+QFS DF++NTRLITMY
Sbjct: 94  AWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMY 153

Query: 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203
           S+CG+PL+SR VFD L  +NLFQWNALVSG+ +NELY + +  F+EL S TE +PDNFTF
Sbjct: 154 SICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTF 213

Query: 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263
           PC+IKAC G  D+  G  VHGMA KMGLI D+FV NA+IA+YGKC F++E V+LF+ MPE
Sbjct: 214 PCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPE 273

Query: 264 RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP 311
           +NL+SWNS+I GFSENGF  E++     ++   +G IPDV T+VT+LP
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 203/288 (70%), Gaps = 14/288 (4%)

Query: 37  KHSLRSIFKEKSS-LSLSAKTNNASTQG------LHFLQEITTLCEESKSLNKALSLLQE 89
           K+SL S    KSS   +SA+T +  ++       L  L+EI+ LCE +  LN AL  LQ 
Sbjct: 35  KNSLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCE-AGDLNGALDFLQR 93

Query: 90  NLHN------ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143
              N      A  KEA G+LLQ CG  K++EIG+++ E++  S+QFS DF++NTRLITMY
Sbjct: 94  AWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMY 153

Query: 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203
           S+CG+PL+SR VFD L  +NLFQWNALVSG+ +NELY + +  F+EL S TE +PDNFTF
Sbjct: 154 SICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTF 213

Query: 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263
           PC+IKAC G  D+  G  VHGMA KMGLI D+FV NA+IA+YGKC F++E V+LF+ MPE
Sbjct: 214 PCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPE 273

Query: 264 RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP 311
           +NL+SWNS+I GFSENGF  E++     ++   +G IPDV T+VT+LP
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 191/257 (74%), Gaps = 11/257 (4%)

Query: 65  HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 116
           HFL+ I+  CE +  L+K+   +QE + + +        ++EA G+LLQA G  KDIE+G
Sbjct: 45  HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 103

Query: 117 KRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 176
           +++H+LVS ST+  ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 104 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 163

Query: 177 NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVF 236
           NELY +VL  F+E+ S T+L PD+FT+PCVIKAC G++DVG G  VHG+  K GL+ DVF
Sbjct: 164 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 223

Query: 237 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM--G 294
           V NAL++ YG   FV + ++LF++MPERNLVSWNS+I  FS+NGFS ESF LL +MM   
Sbjct: 224 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283

Query: 295 CEEGFIPDVITVVTVLP 311
            +  F+PDV T+VTVLP
Sbjct: 284 GDGAFMPDVATLVTVLP 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 191/257 (74%), Gaps = 11/257 (4%)

Query: 65  HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 116
           HFL+ I+  CE +  L+K+   +QE + + +        ++EA G+LLQA G  KDIE+G
Sbjct: 400 HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 458

Query: 117 KRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 176
           +++H+LVS ST+  ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 459 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 518

Query: 177 NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVF 236
           NELY +VL  F+E+ S T+L PD+FT+PCVIKAC G++DVG G  VHG+  K GL+ DVF
Sbjct: 519 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 578

Query: 237 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM--G 294
           V NAL++ YG   FV + ++LF++MPERNLVSWNS+I  FS+NGFS ESF LL +MM   
Sbjct: 579 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 638

Query: 295 CEEGFIPDVITVVTVLP 311
            +  F+PDV T+VTVLP
Sbjct: 639 GDGAFMPDVATLVTVLP 655

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Glycine max]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/272 (51%), Positives = 184/272 (67%), Gaps = 14/272 (5%)

Query: 47  KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADL------KEAT 100
           KSSL+   KT++   Q LH       LC+ S +LN AL+LL  +  N  +      KEA 
Sbjct: 43  KSSLTSHTKTHSPILQRLH------NLCD-SGNLNDALNLLHSHAQNGTVSSSDISKEAI 95

Query: 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160
           G+LL+ACGH K+I +G++VH LVSAS +  ND +++TR+I MYS CG P DSR VFD+ K
Sbjct: 96  GILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAK 155

Query: 161 TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220
            ++LF +NAL+SG+++N L+ D +S+F+EL S T+L PDNFT PCV KAC G+ADV  G 
Sbjct: 156 EKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGE 215

Query: 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENG 280
            VH +A K G   D FV NALIAMYGKC FVE  VK+FE M  RNLVSWNS++   SENG
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENG 275

Query: 281 FSCESFDLLIKMM-GCEEGFIPDVITVVTVLP 311
              E   +  +++   EEG +PDV T+VTV+P
Sbjct: 276 GFGECCGVFKRLLISEEEGLVPDVATMVTVIP 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 190/279 (68%), Gaps = 27/279 (9%)

Query: 45  KEKSSLSLSAKTNNA----STQGLHFLQEITTLCEESKSLNKALSLLQENLHNAD----- 95
           +++SS   +   +NA    ST   HFL+ I+  CE +  L+K+  ++QE   + +     
Sbjct: 21  RKESSFPRADYNSNAISSNSTNANHFLRRISNFCE-TGDLDKSFRVVQEFAGDDESSSDV 79

Query: 96  ---LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS 152
              ++EA G+LLQA G  KDIE+G+++H LVS ST+  +D ++ TR+ITMY++CG P DS
Sbjct: 80  FLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDS 139

Query: 153 RRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212
           R  FD+L+++NLFQWNA++S +++NELY +VL +F+++ S T L PDNFTFPCVIKAC G
Sbjct: 140 RSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAG 199

Query: 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSI 272
           I+DVG G  VHG+  K GL+ D+FV NAL++ YG   FV + +KLF++MPERNLVSWNS+
Sbjct: 200 ISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSM 259

Query: 273 ICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVLP 311
           I  FS+N              G +  F+PDV TVVTVLP
Sbjct: 260 IRVFSDN--------------GDDGAFMPDVATVVTVLP 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein [Brassica oleracea]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/298 (43%), Positives = 193/298 (64%), Gaps = 21/298 (7%)

Query: 26  PQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALS 85
           PQ       R  H       +KS++  +   ++ ST G H L+ ++ LCE        L 
Sbjct: 9   PQLSTLFDSRRSH-------KKSTIPRAVAVSSTSTNGEHLLRRVSGLCETGNPPQGVLQ 61

Query: 86  LLQENLHNADLKEATGVLL----------QACGHEKDIEIGKRVHELVSASTQFSNDFII 135
           +++E   + + K ++   L          QA G  KDI++G+++H+LVS S + SND ++
Sbjct: 62  VIEE--FDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQLVSESARLSNDDVL 119

Query: 136 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE 195
            TR+ITMYS+CG P DSR VFD+L+ +NLFQWNA++S +++NELY +VL +FV++ +++ 
Sbjct: 120 CTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESG 179

Query: 196 LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255
           L PDNFTFPCV+KAC G+++V  G  VHG+  K  L+ DVFVSNAL++ YG    V + +
Sbjct: 180 LLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDAL 239

Query: 256 KLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEE--GFIPDVITVVTVLP 311
           ++F++MPERNLVSWNS+I  FS+NG S E F LL +MM  ++   F PDV T+ TVLP
Sbjct: 240 RVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLP 297

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:505006130	970	AT1G18485 [Arabidopsis thalian	0.829	0.265	0.523	2.1e-70
TAIR|locus:2122634	527	OTP70 "AT4G25270" [Arabidopsis	0.845	0.499	0.314	1.3e-34
TAIR|locus:2162207	830	CRR21 "chlororespiratory reduc	0.790	0.296	0.341	1.4e-34
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.848	0.304	0.324	6.4e-33
TAIR|locus:2013079	894	AT1G19720 "AT1G19720" [Arabido	0.893	0.310	0.302	8.8e-33
TAIR|locus:4010713895	595	AT4G21065 "AT4G21065" [Arabido	0.659	0.344	0.336	1.6e-29
TAIR|locus:2124603	617	AT4G18520 [Arabidopsis thalian	0.655	0.330	0.336	5.2e-29
TAIR|locus:2064828	860	AT2G40720 [Arabidopsis thalian	0.614	0.222	0.365	9.8e-29
TAIR|locus:2155740	738	AT5G65570 [Arabidopsis thalian	0.736	0.310	0.320	1.1e-28
TAIR|locus:2083961	768	AT3G53360 "AT3G53360" [Arabido	0.768	0.311	0.286	1.2e-28

TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 144/275 (52%), Positives = 202/275 (73%)

Query:    48 SSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENL----HNAD----LKEA 99
             +S S+S+ + NA+    HFL+ I+  CE    L+K+   +QE +     ++D    ++EA
Sbjct:    32 NSNSISSNSTNAN----HFLRRISNFCETG-DLDKSFRTVQEFVGDDESSSDAFLLVREA 86

Query:   100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL 159
              G+LLQA G  KDIE+G+++H+LVS ST+  ND ++ TR+ITMY++CG P DSR VFD+L
Sbjct:    87 LGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDAL 146

Query:   160 KTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219
             +++NLFQWNA++S +++NELY +VL  F+E+ S T+L PD+FT+PCVIKAC G++DVG G
Sbjct:   147 RSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206

Query:   220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSEN 279
               VHG+  K GL+ DVFV NAL++ YG   FV + ++LF++MPERNLVSWNS+I  FS+N
Sbjct:   207 LAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 266

Query:   280 GFSCESFDLLIKMMGCEEG---FIPDVITVVTVLP 311
             GFS ESF LL +MM  E G   F+PDV T+VTVLP
Sbjct:   267 GFSEESFLLLGEMME-ENGDGAFMPDVATLVTVLP 300

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2122634 OTP70 "AT4G25270" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 88/280 (31%), Positives = 148/280 (52%)

Query:    34 QRNKHSLRSI-FKEKSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH 92
             Q N +   S+ F + S   L  +  +     L  L  + T  E S    K +SL +  + 
Sbjct:    38 QYNNNGFTSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQ--KGISLTEPEIF 95

Query:    93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS 152
              +        LL+ C   + I+ G RVH L+       N+  I+++L+ +Y+ CG+   +
Sbjct:    96 AS--------LLETCYSLRAIDHGVRVHHLIPPYL-LRNNLGISSKLVRLYASCGYAEVA 146

Query:   153 RRVFDSLKTRNL--FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210
               VFD +  R+   F WN+L+SG+ +   Y D ++++ +++ D  +KPD FTFP V+KAC
Sbjct:   147 HEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDG-VKPDRFTFPRVLKAC 205

Query:   211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWN 270
             GGI  V  G  +H    K G   DV+V NAL+ MY KC  + +   +F+++P ++ VSWN
Sbjct:   206 GGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265

Query:   271 SIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
             S++ G+  +G   E+ D+   M+  + G  PD + + +VL
Sbjct:   266 SMLTGYLHHGLLHEALDIFRLMV--QNGIEPDKVAISSVL 303

GO:0008380 "RNA splicing" evidence=IMP

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2162207 CRR21 "chlororespiratory reduction 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.4e-34, P = 1.4e-34
 Identities = 87/255 (34%), Positives = 143/255 (56%)

Query:    60 STQGLHFLQEITTLCEESKSLNKALSLLQE-NLHNADL-KEATGVLLQACGHEKDIEIGK 117
             S     +   +++LC+  + + +ALSL+ E +  N  +  E  G +LQ C +E+D+  GK
Sbjct:    32 SPSSTSYFHRVSSLCKNGE-IKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGK 90

Query:   118 RVHELVSASTQF--SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFT 175
             ++H  +  +  F   N++I  T+L+  Y+ C     +  +F  L+ RN+F W A++    
Sbjct:    91 QIHARILKNGDFYARNEYI-ETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149

Query:   176 KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV 235
             +  L    L  FVE+  + E+ PDNF  P V KACG +    FG GVHG   K GL   V
Sbjct:   150 RIGLCEGALMGFVEML-ENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCV 208

Query:   236 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGC 295
             FV+++L  MYGKC  +++  K+F+ +P+RN V+WN+++ G+ +NG + E+  L   M   
Sbjct:   209 FVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMR-- 266

Query:   296 EEGFIPDVITVVTVL 310
             ++G  P  +TV T L
Sbjct:   267 KQGVEPTRVTVSTCL 281

GO:0009507 "chloroplast" evidence=ISM

GO:0016556 "mRNA modification" evidence=RCA;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 6.4e-33, P = 6.4e-33
 Identities = 89/274 (32%), Positives = 146/274 (53%)

Query:    40 LRSIFKEKSSLSLSAKTNNASTQGLHFLQ-EITTLCEESKSLNKALSLLQ--ENLHNADL 96
             +R +F  KS   LS  ++++S+   HF   ++  LC   K L +A+ LL   + L  A  
Sbjct:    38 IRRLFLRKSQ-GLSVLSSSSSST--HFSNSQLHGLCANGK-LEEAMKLLNSMQELRVAVD 93

Query:    97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVF 156
             ++    L++ C  ++  E G +V+  ++ S+  S    +    + M+   G  +D+  VF
Sbjct:    94 EDVFVALVRLCEWKRAQEEGSKVYS-IALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVF 152

Query:   157 DSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216
               +  RNLF WN LV G+ K   + + + ++  +     +KPD +TFPCV++ CGGI D+
Sbjct:   153 GKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDL 212

Query:   217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGF 276
               G  VH    + G   D+ V NALI MY KC  V+    LF+ MP R+++SWN++I G+
Sbjct:   213 ARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGY 272

Query:   277 SENGFSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
              ENG   E  +L   M G      PD++T+ +V+
Sbjct:   273 FENGMCHEGLELFFAMRGLSVD--PDLMTLTSVI 304

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2013079 AT1G19720 "AT1G19720" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 8.8e-33, P = 8.8e-33
 Identities = 89/294 (30%), Positives = 160/294 (54%)

Query:    15 LF-PSLRQKKSQPQFPATVIQRNKHSLRSIFKEKS-SLSLSAKTNNASTQGLHFLQEITT 72
             LF PS  +     Q PA V   N   L    ++K+ S +   + N    +   +L    +
Sbjct:     4 LFVPSFPKTFLNYQTPAKV--ENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGS 61

Query:    73 LCEESKSLNKALSLLQENLHNADLKEATGV-LLQACGHEKDIEIGKRVHELVSASTQFSN 131
             L E  K+L+   SL Q+    + +K +T + LL++C     I +G+ +H      T+   
Sbjct:    62 LLEAEKALD---SLFQQG---SKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTE--P 113

Query:   132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELS 191
             D  + T+L++MY+ CG   D+R+VFDS++ RNLF W+A++  +++   + +V  +F  + 
Sbjct:   114 DVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMM 173

Query:   192 SDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251
              D  L PD+F FP +++ C    DV  G  +H +  K+G+   + VSN+++A+Y KC  +
Sbjct:   174 KDGVL-PDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGEL 232

Query:   252 EEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305
             +   K F  M ER++++WNS++  + +NG   E+ +L+ +M   +EG  P ++T
Sbjct:   233 DFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEME--KEGISPGLVT 284

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 70/208 (33%), Positives = 117/208 (56%)

Query:   103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
             L++A     D+ +G+ +H +V  S  F +   +   L+ +Y+ CG    + +VFD +  +
Sbjct:   127 LIKAVTTMADVRLGETIHSVVIRSG-FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK 185

Query:   163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222
             +L  WN++++GF +N    + L+++ E++S   +KPD FT   ++ AC  I  +  G  V
Sbjct:   186 DLVAWNSVINGFAENGKPEEALALYTEMNSKG-IKPDGFTIVSLLSACAKIGALTLGKRV 244

Query:   223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282
             H    K+GL  ++  SN L+ +Y +C  VEE   LF+ M ++N VSW S+I G + NGF 
Sbjct:   245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query:   283 CESFDLLIKMMGCEEGFIPDVITVVTVL 310
              E+ +L  K M   EG +P  IT V +L
Sbjct:   305 KEAIELF-KYMESTEGLLPCEITFVGIL 331

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124603 AT4G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 5.2e-29, P = 5.2e-29
 Identities = 70/208 (33%), Positives = 116/208 (55%)

Query:   103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
             +L+ACG    + +GK +H  +  ++   N +I +T L+ +Y  CG   D+  V   L +R
Sbjct:   391 ILRACGSVGALLLGKELHAQIIKNSIEKNVYIGST-LVWLYCKCGESRDAFNVLQQLPSR 449

Query:   163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222
             ++  W A++SG +     ++ L    E+  +  ++P+ FT+   +KAC     +  G  +
Sbjct:   450 DVVSWTAMISGCSSLGHESEALDFLKEMIQEG-VEPNPFTYSSALKACANSESLLIGRSI 508

Query:   223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282
             H +A K   + +VFV +ALI MY KC FV E  ++F+ MPE+NLVSW ++I G++ NGF 
Sbjct:   509 HSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFC 568

Query:   283 CESFDLLIKMMGCEEGFIPDVITVVTVL 310
              E+  L+ +M    EGF  D     T+L
Sbjct:   569 REALKLMYRMEA--EGFEVDDYIFATIL 594

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 9.8e-29, P = 9.8e-29
 Identities = 72/197 (36%), Positives = 111/197 (56%)

Query:   116 GKRVH-ELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGF 174
             GK VH EL     Q ++   I + L+T+YS CG   D+  VF S++ +++  W +L+SG 
Sbjct:   392 GKSVHAELFKRPIQSTST--IESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGL 449

Query:   175 TKNELYTDVLSIFVELSSDTE-LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG 233
              KN  + + L +F ++  D + LKPD+     V  AC G+  + FG  VHG   K GL+ 
Sbjct:   450 CKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVL 509

Query:   234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM 293
             +VFV ++LI +Y KC   E  +K+F  M   N+V+WNS+I  +S N     S DL   M+
Sbjct:   510 NVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLML 569

Query:   294 GCEEGFIPDVITVVTVL 310
                +G  PD +++ +VL
Sbjct:   570 S--QGIFPDSVSITSVL 584

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2155740 AT5G65570 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 76/237 (32%), Positives = 130/237 (54%)

Query:    75 EESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI 134
             E+++++    S+L E +   +   A+ VL+ +CG+ KDI  GK +H L+  S  F +   
Sbjct:   247 EDTEAVKAFQSMLVEKVQPNEYTYAS-VLI-SCGNLKDIGNGKLIHGLMVKSG-FESALA 303

Query:   135 INTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDT 194
               T L+TMY  C    DS RVF  ++  N   W +L+SG  +N      L  F ++  D+
Sbjct:   304 SQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDS 363

Query:   195 ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM 254
              +KP++FT    ++ C  +A    G  +HG+  K G   D +  + LI +YGKC    +M
Sbjct:   364 -IKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCG-CSDM 421

Query:   255 VKL-FEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
              +L F+ + E +++S N++I  +++NGF  E+ DL  +M+    G  P+ +TV++VL
Sbjct:   422 ARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINL--GLQPNDVTVLSVL 476

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 71/248 (28%), Positives = 141/248 (56%)

Query:    50 LSLSAKTNNASTQGLHFLQEITTLCEES--KSLNKALSLLQENLHNADLKEATGV-LLQA 106
             L+ S+  +   T+ L     I +LC+ +  +   +A    Q+N  +  ++  T + L+ A
Sbjct:    19 LATSSVVSTIKTEEL-MNDHINSLCKSNFYREALEAFDFAQKN-SSFKIRLRTYISLICA 76

Query:   107 CGHEKDIEIGKRVHE-LVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLF 165
             C   + +  G+++H+ +++++ ++  D I+N  +++MY  CG   D+R VFD +  RNL 
Sbjct:    77 CSSSRSLAQGRKIHDHILNSNCKY--DTILNNHILSMYGKCGSLRDAREVFDFMPERNLV 134

Query:   166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGM 225
              + ++++G+++N    + + +++++  + +L PD F F  +IKAC   +DVG G  +H  
Sbjct:   135 SYTSVITGYSQNGQGAEAIRLYLKMLQE-DLVPDQFAFGSIIKACASSSDVGLGKQLHAQ 193

Query:   226 AAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCES 285
               K+     +   NALIAMY +   + +  ++F  +P ++L+SW+SII GFS+ GF  E+
Sbjct:   194 VIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEA 253

Query:   286 FDLLIKMM 293
                L +M+
Sbjct:   254 LSHLKEML 261

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017560001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (988 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-36
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-34
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-33
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-25
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-20
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  138 bits (348), Expect = 2e-36
 Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 23/300 (7%)

Query: 15  LFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITTLC 74
           LF     K            R +   R +    S  + S+ + + S   L        LC
Sbjct: 15  LFQLASHKAPNVLPYWNFHGRKR--SRGL----SVAASSSSSTHDSNSQLR------ALC 62

Query: 75  EESKSLNKALSLL---QENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAS-TQFS 130
              + L +AL LL   QE     D ++A   L + C  ++ +E G RV     +S     
Sbjct: 63  SHGQ-LEQALKLLESMQELRVPVD-EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120

Query: 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL 190
               +   +++M+   G  + +  VF  +  R+LF WN LV G+ K   + + L ++  +
Sbjct: 121 VR--LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178

Query: 191 SSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250
                ++PD +TFPCV++ CGGI D+  G  VH    + G   DV V NALI MY KC  
Sbjct: 179 LW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237

Query: 251 VEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
           V     +F+ MP R+ +SWN++I G+ ENG   E  +L   M        PD++T+ +V+
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVI 295

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  132 bits (333), Expect = 2e-34
 Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162
           L++AC   K I   K V+  V  S+ F  D  +  R++ M+  CG  +D+RR+FD +  R
Sbjct: 129 LVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187

Query: 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222
           NL  W  ++ G      Y +  ++F E+  D     +  TF  +++A  G+     G  +
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQL 246

Query: 223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282
           H    K G++GD FVS ALI MY KC  +E+   +F+ MPE+  V+WNS++ G++ +G+S
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

Query: 283 CESFDLLIKMMGCEEGFIPDVITVVTVL 310
            E+  L  +M   + G   D  T   ++
Sbjct: 307 EEALCLYYEM--RDSGVSIDQFTFSIMI 332

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  128 bits (322), Expect = 7e-33
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 87  LQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146
           ++E   + DL   T V+  AC    D  +G+ +H  V   T F+ D  +   LI MY   
Sbjct: 279 MRELSVDPDLMTITSVI-SACELLGDERLGREMHGYV-VKTGFAVDVSVCNSLIQMYLSL 336

Query: 147 GFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV 206
           G   ++ +VF  ++T++   W A++SG+ KN L    L  +  +  D  + PD  T   V
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASV 395

Query: 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL 266
           + AC  + D+  G  +H +A + GLI  V V+NALI MY KC  +++ +++F  +PE+++
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455

Query: 267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTVL 310
           +SW SII G   N    E+     +M+   +   P+ +T++  L
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK---PNSVTLIAAL 496

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  104 bits (262), Expect = 4e-25
 Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 4/209 (1%)

Query: 102 VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT 161
           V+L+A         G+++H      T    D  ++  LI MYS CG   D+R VFD +  
Sbjct: 229 VMLRASAGLGSARAGQQLH-CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287

Query: 162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSG 221
           +    WN++++G+  +    + L ++ E+  D+ +  D FTF  +I+    +A +     
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGF 281
            H    + G   D+  + AL+ +Y K   +E+   +F+ MP +NL+SWN++I G+  +G 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406

Query: 282 SCESFDLLIKMMGCEEGFIPDVITVVTVL 310
             ++ ++  +M+   EG  P+ +T + VL
Sbjct: 407 GTKAVEMFERMIA--EGVAPNHVTFLAVL 433

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRN 163
           L AC    D+++G ++HEL +      +  ++   LI MYS C     +  VF ++  ++
Sbjct: 396 LSACACLGDLDVGVKLHEL-AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454

Query: 164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH 223
           +  W ++++G   N    + L  F ++     LKP++ T    + AC  I  +  G  +H
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIH 512

Query: 224 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSC 283
               + G+  D F+ NAL+ +Y +C  +      F    E+++VSWN ++ G+  +G   
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571

Query: 284 ESFDLLIKMMGCEEGFIPDVITVVTVL 310
            + +L  +M+  E G  PD +T +++L
Sbjct: 572 MAVELFNRMV--ESGVNPDEVTFISLL 596

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSN 239
           + + L +F  L +         T+  +++AC  +  +     V+      G   D ++ N
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162

Query: 240 ALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF 299
            ++ M+ KC  + +  +LF+ MPERNL SW +II G  + G   E+F L  +M   E+G 
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW--EDGS 220

Query: 300 IPDVITVVTVL 310
             +  T V +L
Sbjct: 221 DAEPRTFVVML 231

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 265 NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305
           ++V++N++I G+ + G   E+  L  +M   + G  P+V T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 34.3 bits (80), Expect = 0.004
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPER----NLVSWNSIICGF 276
           DV   N LI  Y K   VEE +KLF  M +R    N+ +++ +I G 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.68
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.67
PF13041	50	PPR_2: PPR repeat family	99.56
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.52
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.5
PF13041	50	PPR_2: PPR repeat family	99.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.44
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.37
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.34
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.32
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.3
PRK12370	553	invasion protein regulator; Provisional	99.27
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.27
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.26
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.23
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.21
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.14
PRK12370	553	invasion protein regulator; Provisional	99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.13
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.11
PF12854	34	PPR_1: PPR repeat	99.08
PF12854	34	PPR_1: PPR repeat	99.03
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.0
KOG1129	478	consensus TPR repeat-containing protein [General f	98.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.98
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.98
PRK14574	822	hmsH outer membrane protein; Provisional	98.97
PRK11189	296	lipoprotein NlpI; Provisional	98.97
KOG1126	638	consensus DNA-binding cell division cycle control	98.96
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.84
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.83
PRK14574	822	hmsH outer membrane protein; Provisional	98.81
PRK11189	296	lipoprotein NlpI; Provisional	98.81
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.79
KOG2003	840	consensus TPR repeat-containing protein [General f	98.78
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.77
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.76
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.69
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.67
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.65
KOG1129	478	consensus TPR repeat-containing protein [General f	98.63
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.57
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.54
KOG2076	895	consensus RNA polymerase III transcription factor	98.54
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.51
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.5
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.45
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.44
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.42
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.35
KOG1125	579	consensus TPR repeat-containing protein [General f	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.33
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.33
KOG2076	895	consensus RNA polymerase III transcription factor	98.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.31
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.3
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.3
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
PLN02789	320	farnesyltranstransferase	98.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.25
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.21
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.18
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.18
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.18
KOG2003	840	consensus TPR repeat-containing protein [General f	98.17
PRK15359	144	type III secretion system chaperone protein SscB;	98.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.11
PRK15359	144	type III secretion system chaperone protein SscB;	98.09
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.05
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.03
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.03
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.02
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.02
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.99
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.95
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.91
PRK04841	903	transcriptional regulator MalT; Provisional	97.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.87
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.84
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.81
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.81
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.8
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.76
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.72
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.71
KOG1125	579	consensus TPR repeat-containing protein [General f	97.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.7
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.7
PRK04841	903	transcriptional regulator MalT; Provisional	97.68
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.66
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.61
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.6
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.58
PLN02789	320	farnesyltranstransferase	97.58
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.49
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.48
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.34
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.28
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.27
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.26
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.23
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.16
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.15
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.15
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.1
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.09
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.07
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.03
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.91
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.88
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.79
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.77
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.66
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.63
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.57
KOG3941	406	consensus Intermediate in Toll signal transduction	96.47
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.47
PRK10803	263	tol-pal system protein YbgF; Provisional	96.45
KOG0553	304	consensus TPR repeat-containing protein [General f	96.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.41
KOG3941	406	consensus Intermediate in Toll signal transduction	96.39
KOG0553	304	consensus TPR repeat-containing protein [General f	96.38
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.32
PF12688	120	TPR_5: Tetratrico peptide repeat	96.31
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	96.24
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.08
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.04
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.81
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.77
PF13371	73	TPR_9: Tetratricopeptide repeat	95.69
PF13371	73	TPR_9: Tetratricopeptide repeat	95.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.65
PRK10803	263	tol-pal system protein YbgF; Provisional	95.57
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.55
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.45
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.01
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.9
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.39
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.34
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.28
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.19
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.06
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.93
KOG4555	175	consensus TPR repeat-containing protein [Function	93.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.92
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.77
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.75
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.66
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.51
PRK15331	165	chaperone protein SicA; Provisional	93.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.38
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.28
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.05
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.01
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.91
PF13512	142	TPR_18: Tetratricopeptide repeat	92.73
PRK15331	165	chaperone protein SicA; Provisional	92.66
PF13428	44	TPR_14: Tetratricopeptide repeat	92.45
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.14
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.14
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.07
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.01
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.36
KOG1585	308	consensus Protein required for fusion of vesicles	91.24
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.2
PRK11906	458	transcriptional regulator; Provisional	91.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.14
PF13428	44	TPR_14: Tetratricopeptide repeat	91.06
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	91.04
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.99
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.91
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.86
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.81
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.73
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	90.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.43
KOG1585	308	consensus Protein required for fusion of vesicles	90.18
KOG4555	175	consensus TPR repeat-containing protein [Function	89.89
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.77
PF13929	292	mRNA_stabil: mRNA stabilisation	89.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	89.11
PF13431	34	TPR_17: Tetratricopeptide repeat	89.03
PRK11906	458	transcriptional regulator; Provisional	88.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.46
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	88.25
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	88.22
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.2
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.76
PF13929	292	mRNA_stabil: mRNA stabilisation	87.76
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.26
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	86.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.62
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.6
PF13762	145	MNE1: Mitochondrial splicing apparatus component	86.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	86.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	86.06
PF13431	34	TPR_17: Tetratricopeptide repeat	86.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	85.24
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.09
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.98
PF13512	142	TPR_18: Tetratricopeptide repeat	84.95
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	84.73
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	84.65
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	84.43
PF13762	145	MNE1: Mitochondrial splicing apparatus component	83.93
PF09477	116	Type_III_YscG: Bacterial type II secretion system	83.77
PF09477	116	Type_III_YscG: Bacterial type II secretion system	83.31
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	81.54
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	80.83
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	80.56

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-49  Score=371.91  Aligned_cols=254  Identities=24%  Similarity=0.448  Sum_probs=245.2

Q ss_pred             hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178           53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS  130 (311)
Q Consensus        53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~  130 (311)
                      ..|++|+.||.++||++|.+|++.| ++++|+++|++|.+  ..||..||+.++++|++.|+.+.+.+++..+. +.|+.
T Consensus       179 ~lf~~m~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~-~~g~~  256 (697)
T PLN03081        179 RLFDEMPERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL-KTGVV  256 (697)
T ss_pred             HHHhcCCCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH-HhCCC
Confidence            5578899999999999999999999 99999999999987  88999999999999999999999999999999 89999


Q ss_pred             chhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          131 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      +|..+||+||++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|.++|++|.+ .|+.||..||++++.+|
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~  335 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIF  335 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      ++.|++++|.+++.+|.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|.++|+
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCCceeEeeccC
Q 037178          291 KMMGCEEGFIPDVITVVTVLP  311 (311)
Q Consensus       291 ~m~~~~~g~~P~~~t~~~li~  311 (311)
                      +|  .+.|+.||..||+++|+
T Consensus       416 ~M--~~~g~~Pd~~T~~~ll~  434 (697)
T PLN03081        416 RM--IAEGVAPNHVTFLAVLS  434 (697)
T ss_pred             HH--HHhCCCCCHHHHHHHHH
Confidence            99  89999999999998863

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.3e-47  Score=364.37  Aligned_cols=254  Identities=29%  Similarity=0.457  Sum_probs=249.3

Q ss_pred             hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178           52 LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF  129 (311)
Q Consensus        52 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~  129 (311)
                      +..|++|+.||+++||++|.+|++.| ++++|+++|++|..  +.||..||+.++++|+..+++..+.+++..|. +.|+
T Consensus       141 ~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~~g~  218 (857)
T PLN03077        141 WYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-RFGF  218 (857)
T ss_pred             HHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH-HcCC
Confidence            36688999999999999999999999 99999999999987  99999999999999999999999999999999 9999


Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      .||..+||+||.+|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.+|.+
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a  297 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISA  297 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL  289 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~  289 (311)
                      |++.|+++.|.+++..|.+.|+.||..+||+||++|++.|++++|.++|++|.+||+++||+||.+|++.|++++|.++|
T Consensus       298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf  377 (857)
T PLN03077        298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY  377 (857)
T ss_pred             HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCCCCCceeEeecc
Q 037178          290 IKMMGCEEGFIPDVITVVTVL  310 (311)
Q Consensus       290 ~~m~~~~~g~~P~~~t~~~li  310 (311)
                      ++|  .+.|+.||..||+++|
T Consensus       378 ~~M--~~~g~~Pd~~t~~~ll  396 (857)
T PLN03077        378 ALM--EQDNVSPDEITIASVL  396 (857)
T ss_pred             HHH--HHhCCCCCceeHHHHH
Confidence            999  8999999999999876

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-46  Score=360.07  Aligned_cols=247  Identities=16%  Similarity=0.218  Sum_probs=225.6

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhh--cCCCchhhH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSAS--TQFSNDFII  135 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~g~~~~~~~  135 (311)
                      .||.++||++|.+|++.| ++++|+++|++|..  +.||..||+.+|.+|++.|++++|.++|++|. .  .|+.||..+
T Consensus       504 ~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~-~~~~gi~PD~vT  581 (1060)
T PLN03218        504 EANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHIT  581 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhcCCCCCcHHH
Confidence            688889999999999999 99999999999877  88899999999999999999999999999987 4  578899999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCC----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKT----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG  211 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~  211 (311)
                      |++||.+|++.|++++|.++|+.|.+    |+..+||++|.+|++.|++++|.++|++|.+ .|+.||..||+++|++|+
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~  660 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999998874    5678999999999999999999999999998 999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCCcchHHH
Q 037178          212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                      +.|++++|.+++++|.+.|+.||..+|++||.+|++.|++++|.++|++|.    .||.++||+||.+|++.|++++|.+
T Consensus       661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle  740 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE  740 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999995    5899999999999999999999999


Q ss_pred             HHHhhhhccCCCCCCceeEeeccC
Q 037178          288 LLIKMMGCEEGFIPDVITVVTVLP  311 (311)
Q Consensus       288 l~~~m~~~~~g~~P~~~t~~~li~  311 (311)
                      +|++|  .+.|+.||..||++||+
T Consensus       741 lf~eM--~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        741 VLSEM--KRLGLCPNTITYSILLV  762 (1060)
T ss_pred             HHHHH--HHcCCCCCHHHHHHHHH
Confidence            99999  88999999999998863

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.9e-46  Score=359.32  Aligned_cols=253  Identities=26%  Similarity=0.469  Sum_probs=247.5

Q ss_pred             hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178           52 LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF  129 (311)
Q Consensus        52 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~  129 (311)
                      ...|++|+.||.++||++|.+|++.| ++++|+++|++|.+  +.||..||+.++.+|++.|+++.+.+++..|. +.|+
T Consensus       242 ~~lf~~m~~~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~  319 (857)
T PLN03077        242 RLVFDRMPRRDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF  319 (857)
T ss_pred             HHHHhcCCCCCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence            47789999999999999999999999 99999999999998  99999999999999999999999999999999 9999


Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      .||..+||+||.+|++.|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+ .|+.||..||++++.+
T Consensus       320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a  398 (857)
T PLN03077        320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSA  398 (857)
T ss_pred             ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL  289 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~  289 (311)
                      |++.|++++|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|.++|
T Consensus       399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf  478 (857)
T PLN03077        399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF  478 (857)
T ss_pred             HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCCCCCceeEeecc
Q 037178          290 IKMMGCEEGFIPDVITVVTVL  310 (311)
Q Consensus       290 ~~m~~~~~g~~P~~~t~~~li  310 (311)
                      ++|  .. +++||..||+++|
T Consensus       479 ~~m--~~-~~~pd~~t~~~lL  496 (857)
T PLN03077        479 RQM--LL-TLKPNSVTLIAAL  496 (857)
T ss_pred             HHH--Hh-CCCCCHhHHHHHH
Confidence            999  54 6999999998876

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.1e-45  Score=351.69  Aligned_cols=253  Identities=13%  Similarity=0.166  Sum_probs=128.1

Q ss_pred             hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178           53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS  130 (311)
Q Consensus        53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~  130 (311)
                      ..+..|+.||..+||.+|.+|++.| ++++|.++|++|.+  ..||..+|+++|.+|++.|++++|.++|++|. +.|+.
T Consensus       427 ~lf~~M~~pd~~Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~  504 (1060)
T PLN03218        427 RFAKLIRNPTLSTFNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVE  504 (1060)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCC
Confidence            3445555555555555555555555 55555555555554  45555555555555555555555555555555 45555


Q ss_pred             chhhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCCcchHHH
Q 037178          131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPDNFTFPC  205 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~t~~~  205 (311)
                      ||..+|++||.+|++.|++++|.++|++|.    .||.++||++|.+|++.|++++|.++|++|... .|+.||.+||++
T Consensus       505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna  584 (1060)
T PLN03218        505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA  584 (1060)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence            555555555555555555555555555553    245555555555555555555555555555321 244455555555


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCC
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSENGF  281 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~  281 (311)
                      +|.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            5555555555555555555555555444444555555555555554444444444442    344444444444444444


Q ss_pred             cchHHHHHHhhhhccCCCCCCceeEeec
Q 037178          282 SCESFDLLIKMMGCEEGFIPDVITVVTV  309 (311)
Q Consensus       282 ~~~a~~l~~~m~~~~~g~~P~~~t~~~l  309 (311)
                      +++|.+++++|  .+.|+.||..||++|
T Consensus       665 ~eeA~~l~~eM--~k~G~~pd~~tynsL  690 (1060)
T PLN03218        665 LDKAFEILQDA--RKQGIKLGTVSYSSL  690 (1060)
T ss_pred             HHHHHHHHHHH--HHcCCCCCHHHHHHH
Confidence            44444444444  344444444444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=341.09  Aligned_cols=250  Identities=18%  Similarity=0.258  Sum_probs=228.2

Q ss_pred             HHHHHhhcCccc--hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhH
Q 037178           40 LRSIFKEKSSLS--LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEI  115 (311)
Q Consensus        40 ~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~  115 (311)
                      +.+.+.+...+.  ...|+.|+.+|+++||++|.+|++.| ++++|+++|++|.+  +.||..||++++++|++.|++++
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g-~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG-YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence            344444444333  47789999999999999999999999 99999999999987  89999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178          116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE  195 (311)
Q Consensus       116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~  195 (311)
                      |.++++.|. +.|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|.++|++|.+ .|
T Consensus       344 a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g  421 (697)
T PLN03081        344 AKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA-EG  421 (697)
T ss_pred             HHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hC
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CCCCcchHHHHHHHHhccCChhhHHHHHHHHHH-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhhHHHHH
Q 037178          196 LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK-MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP-ERNLVSWNSII  273 (311)
Q Consensus       196 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~y~~li  273 (311)
                      +.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +||..+|++|+
T Consensus       422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll  501 (697)
T PLN03081        422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL  501 (697)
T ss_pred             CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence            999999999999999999999999999999986 5999999999999999999999999999999997 47777777777


Q ss_pred             HHHHhCCCcchHHHHHHhh
Q 037178          274 CGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       274 ~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+|+..|+++.|.++++++
T Consensus       502 ~a~~~~g~~~~a~~~~~~l  520 (697)
T PLN03081        502 TACRIHKNLELGRLAAEKL  520 (697)
T ss_pred             HHHHHcCCcHHHHHHHHHH
Confidence            7666666666666655555

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=1.3e-18  Score=154.22  Aligned_cols=234  Identities=14%  Similarity=0.013  Sum_probs=192.0

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch----hhHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND----FIINTR  138 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~  138 (311)
                      ..|..+...|.+.| ++++|..+|+++.+ .+.+..++..++..+...|++++|.+.++.+. +.+..+.    ...+..
T Consensus       108 ~~~~~La~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        108 LALQELGQDYLKAG-LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHH
Confidence            45788888999999 99999999999988 56677889999999999999999999999988 5442221    224566


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      +...+.+.|++++|.+.|+++.+  | +...+..+...+.+.|++++|.++|+++.. .+......++..+..++++.|+
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCC
Confidence            77788899999999999998763  3 566788889999999999999999999976 3322224568889999999999


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHh---CCCcchHHHHHH
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSE---NGFSCESFDLLI  290 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~---~g~~~~a~~l~~  290 (311)
                      +++|...++.+.+..  |+...+..+...|.+.|++++|.++++++.+  |+...++.++..++.   .|+.+++..+++
T Consensus       265 ~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~  342 (389)
T PRK11788        265 EAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR  342 (389)
T ss_pred             HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence            999999999988764  5666778899999999999999999998774  888889988888775   568999999999


Q ss_pred             hhhhccCCCCCCce
Q 037178          291 KMMGCEEGFIPDVI  304 (311)
Q Consensus       291 ~m~~~~~g~~P~~~  304 (311)
                      +|  .+.+++|+..
T Consensus       343 ~~--~~~~~~~~p~  354 (389)
T PRK11788        343 DL--VGEQLKRKPR  354 (389)
T ss_pred             HH--HHHHHhCCCC
Confidence            99  7878887764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.80  E-value=9.9e-18  Score=148.62  Aligned_cols=239  Identities=10%  Similarity=-0.067  Sum_probs=197.9

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccC-C-CC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHN-A-DL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII  135 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~-~-~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  135 (311)
                      .+..+|..+...+.+.| ++++|..+++.+... . ++   ...+..+...+...|+++.|..+|+.+. +.. +.+..+
T Consensus        67 ~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~-~~~~~~  143 (389)
T PRK11788         67 ETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV-DEG-DFAEGA  143 (389)
T ss_pred             ccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCC-cchHHH
Confidence            34567899999999999 999999999998872 1 11   2467888899999999999999999998 543 457788


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCCC--C------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHH
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKTR--N------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCV  206 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--~------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~l  206 (311)
                      ++.++..|.+.|++++|.+.|+.+.+.  +      ...|..+...+.+.|++++|...|+++.+ .  .|+ ...+..+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~l  220 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA-A--DPQCVRASILL  220 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-H--CcCCHHHHHHH
Confidence            999999999999999999999998642  1      12466788888999999999999999976 3  344 4577788


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCcch
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~  284 (311)
                      ...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+  |+...++.++..+.+.|++++
T Consensus       221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~  300 (389)
T PRK11788        221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEA  300 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHH
Confidence            899999999999999999998775333357789999999999999999999999874  777778899999999999999


Q ss_pred             HHHHHHhhhhccCCCCCCceeEeec
Q 037178          285 SFDLLIKMMGCEEGFIPDVITVVTV  309 (311)
Q Consensus       285 a~~l~~~m~~~~~g~~P~~~t~~~l  309 (311)
                      |.++++++  .+.  .|+..+++.+
T Consensus       301 A~~~l~~~--l~~--~P~~~~~~~l  321 (389)
T PRK11788        301 AQALLREQ--LRR--HPSLRGFHRL  321 (389)
T ss_pred             HHHHHHHH--HHh--CcCHHHHHHH
Confidence            99999998  443  6887766543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.68  E-value=1.3e-14  Score=141.23  Aligned_cols=191  Identities=13%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..+...+.+.| ++++|...|+++.+ .+.+...+..+...+...|++++|..+++.+. +.. +.+..++..+...+
T Consensus       603 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~  679 (899)
T TIGR02917       603 AWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL-ELK-PDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHH
Confidence            3444444444444 44444444444443 22233334444444444444444444444443 221 22233444444444


Q ss_pred             HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178          144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~  220 (311)
                      .+.|++++|.++++.+.+   .+...+..+...+.+.|++++|.+.|+++..   ..|+..++..+..++.+.|++++|.
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHH
Confidence            444444444444444432   1333444444444455555555555554433   2233344444444444555555555


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +.++.+.+.. +.+..+++.+...|.+.|+.++|.++|+++.
T Consensus       757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  797 (899)
T TIGR02917       757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV  797 (899)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            5444444432 3344445555555555555555555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.67  E-value=2.3e-14  Score=139.57  Aligned_cols=225  Identities=11%  Similarity=0.004  Sum_probs=118.7

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...|+.+...+...| ++++|...|+++.+ .+.+...+..+...+...|++++|.+.++.+. +.+ +.+..++..+.
T Consensus       464 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~  540 (899)
T TIGR02917       464 NASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL-TID-PKNLRAILALA  540 (899)
T ss_pred             CcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cCcHHHHHHHH
Confidence            4445666666666666 66666666666665 33444455555566666666666666666665 332 33445555555


Q ss_pred             HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  217 (311)
                      ..+.+.|+.++|...|+++.+   .+...+..++..|.+.|++++|..+++++.. . ...+..+|..+..++...|+++
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~  618 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD-A-APDSPEAWLMLGRAQLAAGDLN  618 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHH
Confidence            566566666666666555431   2334445555555555555555555555543 1 1223344555555555555555


Q ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+   .+..+|..++..+...|++++|.++++.+
T Consensus       619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  695 (899)
T TIGR02917       619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL  695 (899)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555554443 23344455555555555555555555555442   12334444444444444444444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.56  E-value=7.7e-15  Score=89.64  Aligned_cols=50  Identities=26%  Similarity=0.602  Sum_probs=38.3

Q ss_pred             CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      ||+++||++|++|++.|++++|+++|++|.+ .|+.||..||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence            5777777777777777777777777777777 7777777777777777764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.52  E-value=5.5e-12  Score=118.51  Aligned_cols=219  Identities=7%  Similarity=-0.094  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |..+...+.+.| ++++|...+++... .+.+...+..+...+...|+.++|...++.+. ..... +...+..+ ..+.
T Consensus       113 ~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~-~~~P~-~~~a~~~~-~~l~  188 (656)
T PRK15174        113 VLLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA-QEVPP-RGDMIATC-LSFL  188 (656)
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCC-CHHHHHHH-HHHH
Confidence            444444444444 44444444444444 22233344444444444444444444444443 22111 11111111 1234


Q ss_pred             hcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh-
Q 037178          145 LCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF-  218 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~-  218 (311)
                      +.|++++|...++.+.+.    +...+..+..++.+.|++++|...|++..+ .  .|+ ...+..+...+...|++++ 
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~--~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA-R--GLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHcCCchhh
Confidence            445555555444443321    122223334445555555555555555543 2  232 3344455555555666554 


Q ss_pred             ---HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          219 ---GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       219 ---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                         |...++...+.. +.+..++..+...+.+.|++++|...+++..+  | +...+..+...|.+.|++++|...++++
T Consensus       266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               555555555543 33455666666666666666666666666553  2 2345555666666677777777777666

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.50  E-value=7.6e-12  Score=117.55  Aligned_cols=226  Identities=7%  Similarity=-0.062  Sum_probs=183.9

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      ..+...|..+...+...| ++++|...++.+.. .+.+...+..+ ..+...|++++|...++.+. +....++...+..
T Consensus       141 P~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l-~~~~~~~~~~~~~  217 (656)
T PRK15174        141 SGNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL-PFFALERQESAGL  217 (656)
T ss_pred             CCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH-hcCCCcchhHHHH
Confidence            345667888999999999 99999999998877 33334444333 34778999999999999988 5543344455566


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhh----HHHHHHHhhhcCCCCCC-cchHHHHHHHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTD----VLSIFVELSSDTELKPD-NFTFPCVIKAC  210 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~p~-~~t~~~li~~~  210 (311)
                      +...+.+.|++++|...|++..+   .+...+..+...+...|++++    |...|++..+   ..|+ ...+..+...+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHH
Confidence            67889999999999999998763   367788999999999999986    8999999876   4565 46788999999


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHHHhCCCcchHHH
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVS-WNSIICGFSENGFSCESFD  287 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~-y~~li~~~~~~g~~~~a~~  287 (311)
                      .+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+++.+  |+... +..+..++...|+.++|.+
T Consensus       295 ~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999998875 44677888899999999999999999999884  55433 4445678999999999999


Q ss_pred             HHHhh
Q 037178          288 LLIKM  292 (311)
Q Consensus       288 l~~~m  292 (311)
                      .|++.
T Consensus       374 ~l~~a  378 (656)
T PRK15174        374 VFEHY  378 (656)
T ss_pred             HHHHH
Confidence            99998

>PF13041 PPR_2: PPR repeat family

Probab=99.50  E-value=5.1e-14  Score=85.99  Aligned_cols=50  Identities=22%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178          198 PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK  247 (311)
Q Consensus       198 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  247 (311)
                      ||.++|+++|++|++.|++++|.++|++|.+.|++||..||+++|++|+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999985

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=1.4e-11  Score=115.49  Aligned_cols=225  Identities=11%  Similarity=-0.039  Sum_probs=183.7

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      ....|+.+-..+...| ++++|+..|++.....|+ ...|..+...+...|++++|...++.+. +.. +.+..+|..+.
T Consensus       330 ~a~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~-p~~~~~~~~lg  406 (615)
T TIGR00990       330 EAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL-KLN-SEDPDIYYHRA  406 (615)
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence            4456888888888999 999999999999884444 6688888888999999999999999998 543 44577888899


Q ss_pred             HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~  216 (311)
                      ..|...|++++|...|++..+  | +...|..+...+.+.|++++|+..|++...   ..|+ ...|+.+...+...|++
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence            999999999999999998753  3 677888999999999999999999999876   3454 56788899999999999


Q ss_pred             hhHHHHHHHHHHhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHH
Q 037178          217 GFGSGVHGMAAKMGLIGDV------FVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                      ++|.+.++...+..-..+.      ..++.....|...|++++|.+++++..+  | +...+..+...+.+.|++++|.+
T Consensus       484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~  563 (615)
T TIGR00990       484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK  563 (615)
T ss_pred             HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            9999999998775422111      1223333344557999999999998764  3 44578999999999999999999


Q ss_pred             HHHhh
Q 037178          288 LLIKM  292 (311)
Q Consensus       288 l~~~m  292 (311)
                      .|++.
T Consensus       564 ~~e~A  568 (615)
T TIGR00990       564 LFERA  568 (615)
T ss_pred             HHHHH
Confidence            99988

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=2e-11  Score=103.35  Aligned_cols=231  Identities=17%  Similarity=0.236  Sum_probs=186.1

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      ..+-.+|.++|.+.|+.. ..+.|.+++++..+  .+.+..+||.+|.+-.-.    ...++..+|. ...+.||..|+|
T Consensus       204 PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi-sqkm~Pnl~TfN  277 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI-SQKMTPNLFTFN  277 (625)
T ss_pred             CCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH-HhhcCCchHhHH
Confidence            456678999999999999 99999999999888  889999999999875533    2378899999 888999999999


Q ss_pred             HHHHHHHhcCChhHHHH----HHHhcC----CCChHHHHHHHHHHHhCCChhh-HHHHHHHhhhc---CCCCC----Ccc
Q 037178          138 RLITMYSLCGFPLDSRR----VFDSLK----TRNLFQWNALVSGFTKNELYTD-VLSIFVELSSD---TELKP----DNF  201 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~----l~~~m~----~~~~~~y~~li~~~~~~g~~~~-a~~~~~~m~~~---~~~~p----~~~  201 (311)
                      +++++..+.|+++.|.+    ++.+|+    +|...+|..+|..+++.++..+ |..++.+++.+   ..++|    |..
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            99999999999887655    455565    5888999999999999988754 44444444321   23444    456


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHH
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMG----LIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWN  270 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~  270 (311)
                      .|...+..|.+..+.+.|.++..-+....    +.|+   ..-|..+..+.|.....+.-...|+.|.-    |+..+..
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~  437 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI  437 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence            68889999999999999999988765331    2333   35567788888999999999999999984    7888888


Q ss_pred             HHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178          271 SIICGFSENGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       271 ~li~~~~~~g~~~~a~~l~~~m~~~~~g  298 (311)
                      .++.+.-..|+++-.-++|.+|  ...|
T Consensus       438 ~~lrA~~v~~~~e~ipRiw~D~--~~~g  463 (625)
T KOG4422|consen  438 HLLRALDVANRLEVIPRIWKDS--KEYG  463 (625)
T ss_pred             HHHHHHhhcCcchhHHHHHHHH--HHhh
Confidence            8899999999999999999988  6666

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.38  E-value=1.3e-12  Score=110.51  Aligned_cols=222  Identities=14%  Similarity=0.052  Sum_probs=106.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      |..-|..+...+-..+ +++.|...++++.. .+-+...+..++.. ...+++++|.++++... +.  .++...+..++
T Consensus        43 ~~~~~~~~a~La~~~~-~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~-~~--~~~~~~l~~~l  117 (280)
T PF13429_consen   43 DPEYWRLLADLAWSLG-DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY-ER--DGDPRYLLSAL  117 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccc-ccccccccccccccccc-cc--ccccchhhHHH
Confidence            3333444444444556 89999999999888 44456667777777 68889999998888766 33  24566677788


Q ss_pred             HHHHhcCChhHHHHHHHhcC-----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178          141 TMYSLCGFPLDSRRVFDSLK-----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA  214 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g  214 (311)
                      ..+.+.|+++++.++++...     +.+...|..+...+.+.|+.++|.+.+++..+   ..|+ ......++..+...|
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~  194 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMG  194 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTC
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCC
Confidence            88899999999999988854     24677888888999999999999999999876   5675 567778888999999


Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIK  291 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~  291 (311)
                      +.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+   .|......+..++...|+.++|.++.++
T Consensus       195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred             ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988887775 55667888899999999999999999998774   4777888889999999999999998877


Q ss_pred             h
Q 037178          292 M  292 (311)
Q Consensus       292 m  292 (311)
                      .
T Consensus       274 ~  274 (280)
T PF13429_consen  274 A  274 (280)
T ss_dssp             -
T ss_pred             c
Confidence            6

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=1.1e-10  Score=113.02  Aligned_cols=222  Identities=7%  Similarity=-0.112  Sum_probs=176.0

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +...|..+-.++.. + ++++|+..|.+.....|+......+...+...|++++|...++.+. ..  +|+...+..+..
T Consensus       476 ~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~la~  550 (987)
T PRK09782        476 DAAAWNRLAKCYRD-T-LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAAAN  550 (987)
T ss_pred             CHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHHHH
Confidence            55567777777766 7 8888999888887755665554455556678999999999999876 43  344445566778


Q ss_pred             HHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178          142 MYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~  218 (311)
                      .+.+.|++++|...|++..+.   +...+..+.....+.|++++|...|++..+   ..|+...|..+..++.+.|+.++
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence            889999999999999887643   223333344445566999999999999876   56777788899999999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |...+++..+.. +.+...++.+...+...|++++|...+++..+  | +...+..+..++...|++++|...+++.
T Consensus       628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999988875 55778888888899999999999999998875  4 5578899999999999999999999998

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.37  E-value=1.7e-12  Score=109.89  Aligned_cols=220  Identities=13%  Similarity=0.068  Sum_probs=99.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-C-CCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-N-ADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      .+-..+.+.| ++++|+++++.... . +|+. ..|..+...+...++.+.|...++.+. ..+ +-+...+..++.. .
T Consensus        13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-~~~-~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-ASD-KANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccc-c
Confidence            4466777889 99999999966544 4 4544 445556666677899999999999998 655 2356677777777 7


Q ss_pred             hcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178          145 LCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV  222 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~  222 (311)
                      ..+++++|.++++..-+  ++...+..++..+.+.|+++++.+++++.........+...|..+...+.+.|+.++|.++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            89999999999887643  4667788899999999999999999999876344556777888899999999999999999


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       223 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++..+.. +-|..+.+.++..+...|+.+++.++++...+   .|...|..+..+|...|+.++|..++++.
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence            99999885 44688899999999999999998888877663   57788999999999999999999999998

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.36  E-value=3.9e-10  Score=105.90  Aligned_cols=228  Identities=9%  Similarity=-0.098  Sum_probs=127.2

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC--------
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS--------  130 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~--------  130 (311)
                      .|+...|..+-.+|...| ++++|++.+++..+ .+.+...|..+..++...|++++|...+.......++.        
T Consensus       157 ~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~  235 (615)
T TIGR00990       157 KPDPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV  235 (615)
T ss_pred             CCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            345566777777888888 88888888888777 44455677777888888888888877664332000000        


Q ss_pred             --------------------------------------------------------------------------------
Q 037178          131 --------------------------------------------------------------------------------  130 (311)
Q Consensus       131 --------------------------------------------------------------------------------  130 (311)
                                                                                                      
T Consensus       236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~  315 (615)
T TIGR00990       236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR  315 (615)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence                                                                                            


Q ss_pred             ------------c-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC
Q 037178          131 ------------N-DFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT  194 (311)
Q Consensus       131 ------------~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~  194 (311)
                                  | ....++.+...+...|++++|...|++..+  | +...|..+...+...|++++|...|++..+  
T Consensus       316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--  393 (615)
T TIGR00990       316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK--  393 (615)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence                        0 011222233333344445555555444331  2 233445555555555555555555555543  


Q ss_pred             CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHH
Q 037178          195 ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWN  270 (311)
Q Consensus       195 ~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~  270 (311)
                       ..| +...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++..+  | +...|+
T Consensus       394 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~  471 (615)
T TIGR00990       394 -LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN  471 (615)
T ss_pred             -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence             122 23445555555555555555555555555443 23445555555555666666666666665543  2 345566


Q ss_pred             HHHHHHHhCCCcchHHHHHHhh
Q 037178          271 SIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       271 ~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+...+...|++++|.+.|++.
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~A  493 (615)
T TIGR00990       472 YYGELLLDQNKFDEAIEKFDTA  493 (615)
T ss_pred             HHHHHHHHccCHHHHHHHHHHH
Confidence            6666666666666666666665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.36  E-value=2.4e-10  Score=93.25  Aligned_cols=191  Identities=9%  Similarity=-0.105  Sum_probs=122.6

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+...+...| ++++|...+++... .+.+...+..+...+...|++++|.+.+++.. +.. +.+...+..+...
T Consensus        32 ~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        32 KIRVQLALGYLEQG-DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHH
Confidence            45667777777888 88888888887776 44456667777777777888888888887777 443 3344556666777


Q ss_pred             HHhcCChhHHHHHHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCCh
Q 037178          143 YSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADV  216 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~  216 (311)
                      +...|++++|.+.|++..+     .....+..+...+...|++++|...|++... .  .| +...+..+...+...|++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-I--DPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CcCChHHHHHHHHHHHHcCCH
Confidence            7777777777777776542     1234455566666667777777777766654 2  23 234555666666666666


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  261 (311)
                      ++|...+++..+. .+.+...+..+...+.+.|+.++|..+.+.+
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6666666666555 2334455555566666666666666655543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=4.2e-10  Score=112.65  Aligned_cols=228  Identities=9%  Similarity=0.026  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH-----
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL-----  139 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----  139 (311)
                      +..+...+...| ++++|++.|++..+ .+-+...+..+...+.+.|++++|...++++. +.. +.+...+-.+     
T Consensus       464 ~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al-~~~-P~~~~~~~a~al~l~  540 (1157)
T PRK11447        464 LAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA-QQK-PNDPEQVYAYGLYLS  540 (1157)
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHH
Confidence            445566677888 99999999999888 44456677788888889999999999999887 432 1222222222     


Q ss_pred             ---------------------------------------HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178          140 ---------------------------------------ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY  180 (311)
Q Consensus       140 ---------------------------------------l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~  180 (311)
                                                             ...+...|+.++|.++++.- ..+...+..+...+.+.|++
T Consensus       541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~  619 (1157)
T PRK11447        541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDY  619 (1157)
T ss_pred             hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence                                                   23344445555555555521 12444566777888888888


Q ss_pred             hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178          181 TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFE  259 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  259 (311)
                      ++|.+.|++..+   ..| +...+..+...+...|+.++|.+.++.+.+.. +.+..++..+...+.+.|++++|.++++
T Consensus       620 ~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        620 AAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            888888888876   345 35677888888888899999988888776543 3345666777788888899999999888


Q ss_pred             hCCC--C-------ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178          260 VMPE--R-------NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       260 ~m~~--~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                      ++.+  +       +...+..+...+...|+.++|.+.|++.. ...|+.|+
T Consensus       696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al-~~~~~~~~  746 (1157)
T PRK11447        696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM-VASGITPT  746 (1157)
T ss_pred             HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhcCCCCC
Confidence            8764  1       12355566777888899999999988884 44556554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=3.8e-10  Score=92.07  Aligned_cols=193  Identities=12%  Similarity=0.002  Sum_probs=161.5

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS  172 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~  172 (311)
                      ....+..+...+...|++++|...+++.. +.. +.+...+..+...|...|++++|.+.|++..+   .+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKAL-EHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            35667778888899999999999999988 543 44567888899999999999999999987653   46678888999


Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV  251 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  251 (311)
                      .+...|++++|.+.|++... ....+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence            99999999999999999876 43223 34567778888999999999999999988765 44577888999999999999


Q ss_pred             HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          252 EEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       252 ~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ++|.+.+++..+   .+...+..+...+...|+.++|..+.+.+
T Consensus       186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999998764   35567778888999999999999998887

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.34  E-value=9.6e-11  Score=103.52  Aligned_cols=226  Identities=9%  Similarity=0.027  Sum_probs=174.2

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNAD-LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITM  142 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~  142 (311)
                      .|-.|-..|.+.+ .+++|+..|.+.....| ....+.-+...|-..|.++.|...|++.. +.  .|+ ...||.|..+
T Consensus       254 AYiNLGnV~ke~~-~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-~~--~P~F~~Ay~NlanA  329 (966)
T KOG4626|consen  254 AYINLGNVYKEAR-IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-EL--QPNFPDAYNNLANA  329 (966)
T ss_pred             HHhhHHHHHHHHh-cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH-hc--CCCchHHHhHHHHH
Confidence            4566666666666 67777777666666333 34556666666777788888888888877 33  343 4578888888


Q ss_pred             HHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh
Q 037178          143 YSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~  218 (311)
                      +-..|++.+|+..|.+...  | -..+.+.|...|...|++++|..+|....+   +.|. ...++.|...|-..|++++
T Consensus       330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~  406 (966)
T KOG4626|consen  330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDD  406 (966)
T ss_pred             HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHH
Confidence            8888999998888887652  3 445678888888899999999999888765   6665 4578888888999999999


Q ss_pred             HHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhhhh
Q 037178          219 GSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKMMG  294 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m~~  294 (311)
                      |...+++..+-  +|+ ...|+.+...|-..|+.++|.+.+.+...-|.   ..++.|...|-..|++.+|+.-+++.  
T Consensus       407 Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a--  482 (966)
T KOG4626|consen  407 AIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA--  482 (966)
T ss_pred             HHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH--
Confidence            99999887764  554 57888899999999999999999988886444   47889999999999999999999998  


Q ss_pred             ccCCCCCCc
Q 037178          295 CEEGFIPDV  303 (311)
Q Consensus       295 ~~~g~~P~~  303 (311)
                      .  .++||.
T Consensus       483 L--klkPDf  489 (966)
T KOG4626|consen  483 L--KLKPDF  489 (966)
T ss_pred             H--ccCCCC
Confidence            4  467874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.32  E-value=4.1e-11  Score=105.84  Aligned_cols=230  Identities=12%  Similarity=0.055  Sum_probs=171.4

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhh-----------------------------------HHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEA-----------------------------------TGVLLQ  105 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~-----------------------------------~~~ll~  105 (311)
                      ..+..|-.+-.++...| +.+.|...|.+..++.|+...                                   |.-+.-
T Consensus       148 ~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~  226 (966)
T KOG4626|consen  148 KFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC  226 (966)
T ss_pred             hhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence            34556666666666666 666666666666654443322                                   222222


Q ss_pred             hcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChh
Q 037178          106 ACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~  181 (311)
                      .+-..|++..|.+-|++.. +.  .|+ ...|-.|-+.|...+.+++|...|.+..  .| ..+.+..+...|...|..+
T Consensus       227 ~f~~~Gei~~aiq~y~eAv-kl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld  303 (966)
T KOG4626|consen  227 VFNAQGEIWLAIQHYEEAV-KL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD  303 (966)
T ss_pred             HHhhcchHHHHHHHHHHhh-cC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence            3334466666666666665 33  232 3455567788888888888888887644  23 5677888888888999999


Q ss_pred             hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      -|++.|++..+   +.|+ ...|+.+..++-..|++.+|+..+....... +......+.|...|...|++++|.++|..
T Consensus       304 lAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  304 LAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             HHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999876   6777 4689999999999999999999999988775 44678889999999999999999999999


Q ss_pred             CCC--CCh-hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178          261 MPE--RNL-VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       261 m~~--~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                      ..+  |.. ..+|.|...|-+.|+.++|...+++.  .  .++|+
T Consensus       380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea--l--rI~P~  420 (966)
T KOG4626|consen  380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA--L--RIKPT  420 (966)
T ss_pred             HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH--H--hcCch
Confidence            887  433 47899999999999999999999988  4  46775

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.30  E-value=2.7e-09  Score=94.77  Aligned_cols=214  Identities=8%  Similarity=-0.074  Sum_probs=154.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhccCCCChhhHH--HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           70 ITTLCEESKSLNKALSLLQENLHNADLKEATG--VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      ..+..+.| +++.|...+.++.+..|+.....  .....+...|+.+.|...++.+. +.. +-+..+...+...|.+.|
T Consensus       125 A~aA~~~g-~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-~~~-P~~~~al~ll~~~~~~~g  201 (398)
T PRK10747        125 AEAAQQRG-DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL-EVA-PRHPEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHH
Confidence            33445666 78888888877777555544332  23456667777888888777776 444 445666777777777778


Q ss_pred             ChhHHHHHHHhcCCC---------------------------------------------ChHHHHHHHHHHHhCCChhh
Q 037178          148 FPLDSRRVFDSLKTR---------------------------------------------NLFQWNALVSGFTKNELYTD  182 (311)
Q Consensus       148 ~~~~A~~l~~~m~~~---------------------------------------------~~~~y~~li~~~~~~g~~~~  182 (311)
                      ++++|.+++..+.+.                                             +......+..++...|+.++
T Consensus       202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~  281 (398)
T PRK10747        202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT  281 (398)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence            877777666665521                                             22334556777788888899


Q ss_pred             HHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          183 VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       183 a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |.+++++..+ .  .||.  -..++.+....++.+++.+..+...+.. +-|...+.++...+.+.|++++|.+.|+...
T Consensus       282 A~~~L~~~l~-~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al  355 (398)
T PRK10747        282 AQQIILDGLK-R--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL  355 (398)
T ss_pred             HHHHHHHHHh-c--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9888888765 2  3333  2234455556688888888888887664 5577788888999999999999999999887


Q ss_pred             C--CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          263 E--RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       263 ~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +  |+...|-.+...+.+.|+.++|.+++++-
T Consensus       356 ~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        356 KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4  88888888999999999999999998876

>PRK12370 invasion protein regulator; Provisional

Probab=99.27  E-value=1.5e-09  Score=100.44  Aligned_cols=224  Identities=10%  Similarity=-0.026  Sum_probs=166.5

Q ss_pred             CCcccHHHHHHHHHh-----cCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcc---------cCCChhHHHHHHHHHHh
Q 037178           61 TQGLHFLQEITTLCE-----ESKSLNKALSLLQENLHNADL-KEATGVLLQACG---------HEKDIEIGKRVHELVSA  125 (311)
Q Consensus        61 ~~~~~~~~li~~~~~-----~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~  125 (311)
                      .+...|...+++-..     .+ .+++|..+|++..+..|+ ...|..+..++.         ..++.++|...++++. 
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~-~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al-  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPY-SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT-  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH-
Confidence            344456666666422     23 467999999999984454 445544443332         3355889999999998 


Q ss_pred             hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178          126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-  201 (311)
Q Consensus       126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-  201 (311)
                      +.+ +-+...+..+...+...|++++|...|++..  .| +...|..+...+...|++++|...+++..+   ..|+.. 
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~  407 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAA  407 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChh
Confidence            654 4467788888888999999999999999865  34 567888999999999999999999999977   456532 


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSE  278 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~  278 (311)
                      .+..+...+...|++++|...+++..+..-+-+...+..+...|...|+.++|...++++..  | +....+.+...|+.
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence            33344555777899999999999987765233556678888899999999999999998774  3 33456666677788


Q ss_pred             CCCcchHHHHHHhh
Q 037178          279 NGFSCESFDLLIKM  292 (311)
Q Consensus       279 ~g~~~~a~~l~~~m  292 (311)
                      .|  ++|...++.+
T Consensus       488 ~g--~~a~~~l~~l  499 (553)
T PRK12370        488 NS--ERALPTIREF  499 (553)
T ss_pred             cH--HHHHHHHHHH
Confidence            88  4788877777

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.27  E-value=2.1e-09  Score=107.66  Aligned_cols=227  Identities=11%  Similarity=0.020  Sum_probs=157.7

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHH----------------------------------
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQ----------------------------------  105 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~----------------------------------  105 (311)
                      .+...+..+-..+...| ++++|++.|++..+ .+.+...+..+..                                  
T Consensus       383 ~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARK-DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            34556777888888889 99999999999887 3333333332222                                  


Q ss_pred             --------hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHH
Q 037178          106 --------ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGF  174 (311)
Q Consensus       106 --------~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~  174 (311)
                              .+...|++++|.+.+++.. +.. +-+...+..+...|.+.|++++|...|++..+  | +...+..+...+
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l  539 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRL-ALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL  539 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                    2335678888888888877 443 33455666788888888888888888887642  3 333333333333


Q ss_pred             HhCCChhhHHHHHHHhhhcC---------------------------------------CCCCCcchHHHHHHHHhccCC
Q 037178          175 TKNELYTDVLSIFVELSSDT---------------------------------------ELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       175 ~~~g~~~~a~~~~~~m~~~~---------------------------------------~~~p~~~t~~~li~~~~~~g~  215 (311)
                      .+.|+.++|...++.+.. .                                       ....+...+..+...+.+.|+
T Consensus       540 ~~~~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~  618 (1157)
T PRK11447        540 SGSDRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD  618 (1157)
T ss_pred             HhCCCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            344444444444433211 0                                       012234456677778888899


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++|...++...+.. +.+...+..+...|...|++++|.+.++...+  | +..++..+..++...|+.++|.++++++
T Consensus       619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  697 (1157)
T PRK11447        619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL  697 (1157)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999988875 55788899999999999999999999998775  3 4456777888888999999999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.26  E-value=1.7e-09  Score=104.81  Aligned_cols=216  Identities=10%  Similarity=-0.088  Sum_probs=173.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCCh
Q 037178           70 ITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFP  149 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~  149 (311)
                      ..++.+.| ++++|...|+++...+|+...+..+...+.+.|+.++|...+++.. +.+ +.+...+..+.....+.|++
T Consensus       516 A~al~~~G-r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL-~l~-P~~~~l~~~La~~l~~~Gr~  592 (987)
T PRK09782        516 AYQAYQVE-DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE-QRG-LGDNALYWWLHAQRYIPGQP  592 (987)
T ss_pred             HHHHHHCC-CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHhCCCH
Confidence            44445889 9999999999987755666667777788889999999999999998 654 33333343444455566999


Q ss_pred             hHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHH
Q 037178          150 LDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       150 ~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m  226 (311)
                      ++|...|++..  .|+...|..+..++.+.|++++|...|++...   ..|+. ..+..+-.++...|+.++|...++..
T Consensus       593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A  669 (987)
T PRK09782        593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERA  669 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999876  47788999999999999999999999999976   56764 56777778999999999999999999


Q ss_pred             HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNL-VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+.. +-+...+..+..+|.+.|++++|+..|++..+  |+. .+.-.......+..+++.|.+-+++-
T Consensus       670 L~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        670 HKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8875 55788999999999999999999999999875  433 44555556666677777777766655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.2e-10  Score=101.94  Aligned_cols=221  Identities=10%  Similarity=-0.055  Sum_probs=174.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccC-----------------------------------CCChhhHHHHHHhccc
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHN-----------------------------------ADLKEATGVLLQACGH  109 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~-----------------------------------~~~~~~~~~ll~~~~~  109 (311)
                      ....+-++|.+-+ ++++|.++|+..++.                                   +-.+.+|.++.++|.-
T Consensus       355 vl~q~GrayFEl~-~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  355 VLSQLGRAYFELI-EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            3456778899999 999999999988751                                   1245677777777888


Q ss_pred             CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH---HHHHHHhCCChhhHHHH
Q 037178          110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA---LVSGFTKNELYTDVLSI  186 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~---li~~~~~~g~~~~a~~~  186 (311)
                      .++.+.|.+.|++.. +.+ +...++|+.+-+-+.....+|.|...|+.....|...||+   +.-.|.+.++++.|.-.
T Consensus       434 Qkdh~~Aik~f~RAi-Qld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAI-QLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             hhHHHHHHHHHHHhh-ccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence            888899999998887 443 2377888888888888889999999999888777766655   56788899999999999


Q ss_pred             HHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178          187 FVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--  263 (311)
Q Consensus       187 ~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--  263 (311)
                      |++..+   +.| +.+....+...+-+.|+.|+|..++++.....-+ |...---....+...++.++|++.++++++  
T Consensus       512 fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  512 FQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             HHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence            988865   666 4566677777888999999999999988776633 443434445566778999999999999986  


Q ss_pred             C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          264 R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      | +...|-.+...|-+.|+.+.|+.-|.-|
T Consensus       588 P~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  588 PQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             cchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            4 5678888889999999999999988877

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.3e-09  Score=87.97  Aligned_cols=224  Identities=15%  Similarity=0.131  Sum_probs=173.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND--FIINTRLITM  142 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~~  142 (311)
                      |-.=++.+.. . +.++|.++|-+|.+ .+-+..+-.++.+.+-+.|.+++|..++..+.+..++.-+  ....-.|-.-
T Consensus        39 Yv~GlNfLLs-~-Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          39 YVKGLNFLLS-N-QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHhHHHHHhh-c-CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            4444444433 4 68999999999998 4445556677888999999999999999998844343332  2234457788


Q ss_pred             HHhcCChhHHHHHHHhcCCCC---hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCC
Q 037178          143 YSLCGFPLDSRRVFDSLKTRN---LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIAD  215 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~  215 (311)
                      |...|-++.|+.+|..+.+.+   ..+...|+..|-...+|++|+++-++... .+-.+..    ..|.-+...+....+
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhh
Confidence            899999999999999988643   34667889999999999999999998877 4444432    245556666667788


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCCcchHHHHHHh
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL----VSWNSIICGFSENGFSCESFDLLIK  291 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~y~~li~~~~~~g~~~~a~~l~~~  291 (311)
                      ++.|..++.+..+.+ +-++..--.+.+.+...|+++.|.+.++...+.|.    .+-..|..+|...|+.++....+.+
T Consensus       196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999888775 34555555677889999999999999999998665    3678899999999999999999998


Q ss_pred             hh
Q 037178          292 MM  293 (311)
Q Consensus       292 m~  293 (311)
                      +.
T Consensus       275 ~~  276 (389)
T COG2956         275 AM  276 (389)
T ss_pred             HH
Confidence            83

>TIGR00540 hemY_coli hemY protein

Probab=99.23  E-value=1e-08  Score=91.46  Aligned_cols=218  Identities=12%  Similarity=-0.031  Sum_probs=150.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH-------HHHHH
Q 037178           69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII-------NTRLI  140 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~-------~~~ll  140 (311)
                      ....+...| +++.|...++.+.+ .+-+...+..+...+...|+++++.+++..+. +.+...+...       +..++
T Consensus       159 ~a~l~l~~~-~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       159 RTRILLAQN-ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence            355666677 77777777777777 44455667777777777777777777777777 6553322221       11111


Q ss_pred             HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH---HHHHHHHhccC
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF---PCVIKACGGIA  214 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~---~~li~~~~~~g  214 (311)
                      ..-......+...+.++..++   .+...+..+...+...|+.++|.+++++..+   ..||....   ....-.....+
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~  313 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPE  313 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCC
Confidence            111112223344444555443   3777788889999999999999999999876   34555421   22222234457


Q ss_pred             ChhhHHHHHHHHHHhCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHh--hCC--CCChhhHHHHHHHHHhCCCcchHHHH
Q 037178          215 DVGFGSGVHGMAAKMGLIGDV--FVSNALIAMYGKCAFVEEMVKLFE--VMP--ERNLVSWNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~--~m~--~~~~~~y~~li~~~~~~g~~~~a~~l  288 (311)
                      +.+.+.+.++...+.. +-|.  ....++...+.+.|++++|.+.|+  ...  .||...+..+...+.+.|+.++|.++
T Consensus       314 ~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       314 DNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7788888888777653 3344  667788999999999999999999  453  58888899999999999999999999


Q ss_pred             HHhh
Q 037178          289 LIKM  292 (311)
Q Consensus       289 ~~~m  292 (311)
                      +++-
T Consensus       393 ~~~~  396 (409)
T TIGR00540       393 RQDS  396 (409)
T ss_pred             HHHH
Confidence            9885

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=6.3e-10  Score=94.46  Aligned_cols=206  Identities=13%  Similarity=0.099  Sum_probs=155.9

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHH
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWN  168 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~  168 (311)
                      .+.+..||.++|.+.|+-...++|.+++++.. ....+.+..++|.+|.+-.-...    .++..+|.    .||..|+|
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence            34577899999999999999999999999998 66668899999999877554322    56666664    58999999


Q ss_pred             HHHHHHHhCCChhh----HHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh-HHHHHHHHHH----hCCCC----cH
Q 037178          169 ALVSGFTKNELYTD----VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF-GSGVHGMAAK----MGLIG----DV  235 (311)
Q Consensus       169 ~li~~~~~~g~~~~----a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~~----~~  235 (311)
                      +++++..+.|+++.    |.+++.+|++ -|+.|...+|-.+|.-+++.++..+ +..++.++..    +-++|    |.
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~  356 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN  356 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence            99999999997764    5677888998 9999999999999999988887754 3344444332    22333    56


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCce
Q 037178          236 FVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN---LVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVI  304 (311)
Q Consensus       236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~---~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~  304 (311)
                      ..+..-|+.|.+..+.+-|.++..-.+.        ++   -.-|..+....|+....+..+.+|+.|  .-.-+-|+..
T Consensus       357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--VP~~y~p~~~  434 (625)
T KOG4422|consen  357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--VPSAYFPHSQ  434 (625)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccceecCCch
Confidence            6777778888888888888888766553        22   134667788889999999999999999  5655666655


Q ss_pred             eE
Q 037178          305 TV  306 (311)
Q Consensus       305 t~  306 (311)
                      |-
T Consensus       435 ~m  436 (625)
T KOG4422|consen  435 TM  436 (625)
T ss_pred             hH
Confidence            43

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=1.6e-08  Score=97.08  Aligned_cols=227  Identities=11%  Similarity=0.005  Sum_probs=155.8

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...+..+..++...| ++++|..+|++..+ .+.+...+..+...+...|+.++|...++++. +.. +.+.. +..+
T Consensus        47 ~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l-~~~-P~~~~-~~~l  122 (765)
T PRK10049         47 LPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV-SGA-PDKAN-LLAL  122 (765)
T ss_pred             CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHH-HHHH
Confidence            34445778888888888 88888888888777 45556667777777788888888888888887 442 33444 7777


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHH--------------------------------
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVL--------------------------------  184 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~--------------------------------  184 (311)
                      ..++...|+.++|...+++..+  | +...+..+...+...|..++|+                                
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~  202 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT  202 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence            7788888888888888887653  3 4445555555555555555444                                


Q ss_pred             --------------HHHHHhhhcCCCCCCcch-HH----HHHHHHhccCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHH
Q 037178          185 --------------SIFVELSSDTELKPDNFT-FP----CVIKACGGIADVGFGSGVHGMAAKMGLI-GDVFVSNALIAM  244 (311)
Q Consensus       185 --------------~~~~~m~~~~~~~p~~~t-~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~  244 (311)
                                    +.++.+.+.....|+... +.    ..+.++...|+.++|...|+.+.+.+-+ |+. .-..+...
T Consensus       203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~  281 (765)
T PRK10049        203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA  281 (765)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence                          444444431122333221 11    1133456779999999999999887632 322 22225778


Q ss_pred             HHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          245 YGKCAFVEEMVKLFEVMPERN-------LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~~~~-------~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |...|++++|..+|+++.+.+       ...+..+..++...|++++|.++++++
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~  336 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT  336 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            999999999999999886422       234666777899999999999999999

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.14  E-value=2.9e-09  Score=95.15  Aligned_cols=228  Identities=12%  Similarity=0.049  Sum_probs=174.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc--------CCCChhh-HHHHHHhcccCCChhHHHHHHHHHHhh----cC--C
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH--------NADLKEA-TGVLLQACGHEKDIEIGKRVHELVSAS----TQ--F  129 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--------~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~----~g--~  129 (311)
                      +...+...|...| +++.|..++++..+        ..|...+ .+.+...|...+++.+|..+|+.+..-    .|  .
T Consensus       201 ~~~~La~~y~~~g-~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  201 TLRNLAEMYAVQG-RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3444889999999 99999999999877        1444433 344667788899999999999987721    22  1


Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------CCh-HHHHHHHHHHHhCCChhhHHHHHHHhhhcC--CC
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------RNL-FQWNALVSGFTKNELYTDVLSIFVELSSDT--EL  196 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~--~~  196 (311)
                      +--..+++.|-.+|++.|++++|...+++..+          +.+ ..++.++..++..+++++|..++++..+-.  -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            22345677788899999999999888776431          222 347788889999999999999988754311  12


Q ss_pred             CCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178          197 KPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMG-------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--  263 (311)
Q Consensus       197 ~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--  263 (311)
                      .++.    .+++.+-..+.+.|++++|++++....+..       ..-....++-|-..|.+.++.++|.++|.+...  
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3333    579999999999999999999999876541       222356778888899999999999999987653  


Q ss_pred             -------CCh-hhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178          264 -------RNL-VSWNSIICGFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       264 -------~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~  293 (311)
                             |++ .+|..|...|-+.|++++|.++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                   444 589999999999999999999988773

>PRK12370 invasion protein regulator; Provisional

Probab=99.14  E-value=7.3e-09  Score=95.88  Aligned_cols=208  Identities=12%  Similarity=-0.011  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD  157 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~  157 (311)
                      ++++|...+++..+ .+.+...+..+...+...|++++|...++++. +.+ +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN-LLS-PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58999999999999 55567788888888889999999999999998 655 4456677888999999999999999999


Q ss_pred             hcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 037178          158 SLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG  233 (311)
Q Consensus       158 ~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  233 (311)
                      +..+  |+ ...+..+...+...|++++|...+++... .. .|+. ..+..+..++...|+.++|...+.++.... +.
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~  473 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT  473 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence            9763  43 33344455567778999999999999865 32 3543 346677788889999999999998876552 33


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178          234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g  298 (311)
                      +....+.+...|+..|  ++|...++++.+     ++-.-+  +-..|.-.|+-+.+..+ +++  .+.|
T Consensus       474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~--~~~~  536 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF--KNED  536 (553)
T ss_pred             hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh--hccc
Confidence            4556666777778888  477777777654     222222  44455566776666666 888  5543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.13  E-value=3.3e-08  Score=94.98  Aligned_cols=226  Identities=9%  Similarity=-0.078  Sum_probs=162.4

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...+..+...+.+.| ++++|+..+++... .+.+.. +..+..++...|+.++|...++++. +.. +.+...+..+
T Consensus        81 ~~~~a~~~la~~l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al-~~~-P~~~~~~~~l  156 (765)
T PRK10049         81 QNDDYQRGLILTLADAG-QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL-PRA-PQTQQYPTEY  156 (765)
T ss_pred             CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHH
Confidence            34556778888889999 99999999999988 555566 8888888889999999999999998 543 3344555556


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC---------------------------------------------------CChH-HH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT---------------------------------------------------RNLF-QW  167 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~---------------------------------------------------~~~~-~y  167 (311)
                      ..++.+.|..++|.+.++....                                                   |+.. .+
T Consensus       157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~  236 (765)
T PRK10049        157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY  236 (765)
T ss_pred             HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence            7777766776666555543221                                                   1110 01


Q ss_pred             ----HHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC---cHHHHH
Q 037178          168 ----NALVSGFTKNELYTDVLSIFVELSSDTELK-PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG---DVFVSN  239 (311)
Q Consensus       168 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~  239 (311)
                          ...+.++...|++++|...|+++.+ .+.. |+. .-..+..++...|++++|...++.+.+..-..   ......
T Consensus       237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~  314 (765)
T PRK10049        237 QRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA  314 (765)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence                1113345677999999999999987 5422 332 22235678999999999999999987653111   135667


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC--C-------------C---hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMPE--R-------------N---LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~~--~-------------~---~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+..++.+.|++++|.++++++.+  |             +   ...+..+...+...|+.++|+++++++
T Consensus       315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a  385 (765)
T PRK10049        315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL  385 (765)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777788999999999999998875  2             1   124556777888899999999999988

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.11  E-value=1.2e-08  Score=90.61  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=163.9

Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH--HHHH
Q 037178           66 FLQEITTLCE--ESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN--TRLI  140 (311)
Q Consensus        66 ~~~li~~~~~--~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~--~~ll  140 (311)
                      +..+..+...  .| +++.|.+.+....+..+++ ..|.....+..+.|+.+.+.+.+.++. +.  .|+...+  -...
T Consensus        85 ~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-~~--~~~~~~~~~l~~a  160 (398)
T PRK10747         85 RKQTEQALLKLAEG-DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA-EL--ADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCcchHHHHHHHH
Confidence            4444444433  57 9999998888765522223 334444556689999999999999998 43  4554333  2446


Q ss_pred             HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-------------------
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-------------------  198 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-------------------  198 (311)
                      ..+...|++++|.+.++++.+  | +...+..+...|.+.|++++|.+++..+.+ .+..+                   
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999874  3 677899999999999999999999999886 43322                   


Q ss_pred             ----------------------CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178          199 ----------------------DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK  256 (311)
Q Consensus       199 ----------------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  256 (311)
                                            +......+..++...|+.++|.+++.+..+.  .+|...  .++.+....|+.+++.+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence                                  1123334456667888888888888887764  444422  23344445688888888


Q ss_pred             HHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeE
Q 037178          257 LFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITV  306 (311)
Q Consensus       257 ~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~  306 (311)
                      ..++..+  | |...+.++-..+.+.|++++|.+.|+..  .+  ..|+..+|
T Consensus       316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a--l~--~~P~~~~~  364 (398)
T PRK10747        316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA--LK--QRPDAYDY  364 (398)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--Hh--cCCCHHHH
Confidence            8887775  3 4556788899999999999999999999  53  46776553

>PF12854 PPR_1: PPR repeat

Probab=99.08  E-value=1.9e-10  Score=63.39  Aligned_cols=33  Identities=39%  Similarity=0.489  Sum_probs=23.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          230 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       230 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |+.||..+||+||++||+.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566777777777777777777777777777663

>PF12854 PPR_1: PPR repeat

Probab=99.03  E-value=4e-10  Score=62.12  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178          127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK  160 (311)
Q Consensus       127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~  160 (311)
                      .|+.||..+||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3778888888888888888888888888888874

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.03  E-value=4.5e-09  Score=96.49  Aligned_cols=226  Identities=13%  Similarity=0.061  Sum_probs=161.0

Q ss_pred             CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178           58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII  135 (311)
Q Consensus        58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  135 (311)
                      ...|+.+||..+|.-||..| +.+.|- +|.-|+-  .+.+...|+.++.+....++.+.+.            .|...+
T Consensus        20 gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt   85 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT   85 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence            45788899999999999999 999998 8888887  7777888999999999988876543            688899


Q ss_pred             HHHHHHHHHhcCChhH---HHHHHHhcCCC----------------------ChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          136 NTRLITMYSLCGFPLD---SRRVFDSLKTR----------------------NLFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~---A~~l~~~m~~~----------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                      |+.|+.+|...|++..   .++.++.+...                      ....-...+.-..-.|-++.+++++..|
T Consensus        86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~  165 (1088)
T KOG4318|consen   86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV  165 (1088)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999998655   33322222210                      0001123444445556667777776665


Q ss_pred             hhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----h
Q 037178          191 SSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN----L  266 (311)
Q Consensus       191 ~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~  266 (311)
                      .......|..+    +++-+..  +....+++.+.-+...-.|+..+|.++++.-..+|+.+.|..++.+|.+..    .
T Consensus       166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            43222222222    2443333  233445555443332225999999999999999999999999999999843    3


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEee
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVT  308 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~  308 (311)
                      .-|..|+.+   .|....+..+++.|  .+.|+.||..|+..
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgm--qe~gv~p~seT~ad  276 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGM--QEKGVQPGSETQAD  276 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHH--HHhcCCCCcchhHH
Confidence            445666666   88889999999999  89999999999853

>TIGR00540 hemY_coli hemY protein

Probab=99.00  E-value=4.1e-08  Score=87.64  Aligned_cols=230  Identities=9%  Similarity=-0.069  Sum_probs=124.8

Q ss_pred             HHHHhcCCCHHHHHHHHHhhccCCCChh--hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           71 TTLCEESKSLNKALSLLQENLHNADLKE--ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      .+..+.| +.+.|.+.+.+..+..|+..  ........+...|+.+.|...++.+. +.. +-+..+...+...|.+.|+
T Consensus       126 ~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~-~~~-P~~~~~l~ll~~~~~~~~d  202 (409)
T TIGR00540       126 EAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL-EMA-PRHKEVLKLAEEAYIRSGA  202 (409)
T ss_pred             HHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHhh
Confidence            3444555 66666666666555223332  22223455555666666666666665 333 3344555566666666666


Q ss_pred             hhHHHHHHHhcCCC---ChHHHH----HHHHHHHhCCChhhHHHHHHHhhhcCCC---CCCcchHHHHHHHHhccCChhh
Q 037178          149 PLDSRRVFDSLKTR---NLFQWN----ALVSGFTKNELYTDVLSIFVELSSDTEL---KPDNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       149 ~~~A~~l~~~m~~~---~~~~y~----~li~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~t~~~li~~~~~~g~~~~  218 (311)
                      +++|.+++..+.+.   +...+.    ....+....+..+++.+.+..+.. ...   +.+...+..+...+...|+.++
T Consensus       203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~  281 (409)
T TIGR00540       203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDS  281 (409)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence            66666666665532   222221    111111222233333334444433 111   1255566667777778888888


Q ss_pred             HHHHHHHHHHhCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch--hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          219 GSGVHGMAAKMGLIGDVFV-SNALIAMYGKCAFVEEMVKLFEVMPE--R-NL--VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~--~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |.+++++..+......... ...........++.+.+.+.+++..+  | |.  ....++-..+.+.|++++|.+.|+..
T Consensus       282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a  361 (409)
T TIGR00540       282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV  361 (409)
T ss_pred             HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence            8888888777642221111 11111222334667777777766653  3 33  45567888899999999999999954


Q ss_pred             hhccCCCCCCceeE
Q 037178          293 MGCEEGFIPDVITV  306 (311)
Q Consensus       293 ~~~~~g~~P~~~t~  306 (311)
                        ......||...+
T Consensus       362 --~a~~~~p~~~~~  373 (409)
T TIGR00540       362 --AACKEQLDANDL  373 (409)
T ss_pred             --HHhhcCCCHHHH
Confidence              333456776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2e-08  Score=82.73  Aligned_cols=227  Identities=11%  Similarity=-0.034  Sum_probs=188.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC  146 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~  146 (311)
                      +.+-++|.+-| .+.+|..-|+......|-+.||..+-++|.+..+++.|..++.+-. + .++-|+....-..+.+-..
T Consensus       227 ~Q~gkCylrLg-m~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gl-d-~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLG-MPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGL-D-SFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhc-ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhh-h-cCCchhhhhhhhHHHHHHH
Confidence            67788999999 9999999999988877888999999999999999999999999877 2 2344554445566777788


Q ss_pred             CChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178          147 GFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       147 g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~  223 (311)
                      ++.++|.++|+...+   -++.+..++..+|.-.|+++-|++.|.++.+ .|+. +..-|+.+--+|.-.+++|.+..-|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            999999999998764   3677777888899999999999999999998 8874 4566777777888889999999999


Q ss_pred             HHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178          224 GMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       224 ~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g  298 (311)
                      ++....--.|+  ..+|-.+-....-.|++.-|.+.|+-....   +...+|.|..--.+.|+++.|..++...  .  .
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A--~--s  457 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA--K--S  457 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh--h--h
Confidence            98877654454  467878888888899999999999988753   4468999999999999999999999988  3  3


Q ss_pred             CCCC
Q 037178          299 FIPD  302 (311)
Q Consensus       299 ~~P~  302 (311)
                      +-|+
T Consensus       458 ~~P~  461 (478)
T KOG1129|consen  458 VMPD  461 (478)
T ss_pred             hCcc
Confidence            4555

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.98  E-value=5.2e-07  Score=76.38  Aligned_cols=232  Identities=11%  Similarity=0.020  Sum_probs=156.3

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccC--CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHN--ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      ..+..|-.-..+.-+.| +.+.+-..+.+.-+.  .++...+.+..+.....|+.+.|..-.+++. +.+ +....+...
T Consensus       116 ~p~l~~l~aA~AA~qrg-d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-~~~-pr~~~vlrL  192 (400)
T COG3071         116 QPVLAYLLAAEAAQQRG-DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-EMT-PRHPEVLRL  192 (400)
T ss_pred             chHHHHHHHHHHHHhcc-cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhC-cCChHHHHH
Confidence            34445555666666777 888888888887773  4444556666667777888888877777776 444 456666777


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCCCCh-----------HHHH----------------------------------HHHHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKTRNL-----------FQWN----------------------------------ALVSG  173 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~~~~-----------~~y~----------------------------------~li~~  173 (311)
                      ...+|.+.|++.....++..|.+...           .+|+                                  +++.-
T Consensus       193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~  272 (400)
T COG3071         193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER  272 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence            78888888888888888777764211           2333                                  34444


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  253 (311)
                      +.+.|+.++|.++.++-.+ .+-.|+    -...-.+.+.++.+.-.+..+...+. .+-+...+.+|...|.+.+.+.+
T Consensus       273 li~l~~~~~A~~~i~~~Lk-~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~k  346 (400)
T COG3071         273 LIRLGDHDEAQEIIEDALK-RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGK  346 (400)
T ss_pred             HHHcCChHHHHHHHHHHHH-hccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHH
Confidence            5555666666666555554 444444    11222334444444444444433322 24455888899999999999999


Q ss_pred             HHHHHhhCCC--CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178          254 MVKLFEVMPE--RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       254 A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~  303 (311)
                      |...|+...+  ++..+|+-+..+|.+.|+.++|.++.++-  ...-..|+.
T Consensus       347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~--L~~~~~~~~  396 (400)
T COG3071         347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREA--LLLTRQPNL  396 (400)
T ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH--HHHhcCCCC
Confidence            9999998764  89999999999999999999999999988  554455543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.6e-08  Score=83.59  Aligned_cols=217  Identities=13%  Similarity=0.063  Sum_probs=160.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc----CCCChhhHHHHHHhcccCCChhH-HHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH----NADLKEATGVLLQACGHEKDIEI-GKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~----~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +-+.+.++.-+.+++++|+++|+...+    .-.|..+|.-++-.--....+.- |+.++. +   .  +--..|+.++.
T Consensus       264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i---d--KyR~ETCCiIa  337 (559)
T KOG1155|consen  264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I---D--KYRPETCCIIA  337 (559)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h---c--cCCccceeeeh
Confidence            334444444444488999999998887    33456677766655332222211 111111 1   1  33456777788


Q ss_pred             HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~  216 (311)
                      +.|+-.++-++|...|++..+   .....|+-+.+-|....+...|++-+++..+   +.| |-..|-.|-++|.-.+..
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcch
Confidence            888888999999999988653   3567899999999999999999999988865   444 667888888999998888


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .-|.-.|++..+-. +.|..+|.+|.++|.+.++.++|.+.|.....   .+...|..|.+.|-+.++..+|...|++-
T Consensus       415 ~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  415 FYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            88888888877764 66889999999999999999999999988774   34478889999999999999988887765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.97  E-value=3.4e-07  Score=87.47  Aligned_cols=217  Identities=8%  Similarity=0.008  Sum_probs=139.9

Q ss_pred             HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChh
Q 037178           72 TLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPL  150 (311)
Q Consensus        72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~  150 (311)
                      .+...| ++++|+++|+++.+ .+.+...+..++..+...++.++|.+.++.+. +.  .|+...+-.++..+...++..
T Consensus       111 ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-~~--dp~~~~~l~layL~~~~~~~~  186 (822)
T PRK14574        111 AYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-ER--DPTVQNYMTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc-cc--CcchHHHHHHHHHHHhcchHH
Confidence            455556 77777777777766 44445555566666666777777777777665 32  344444433333333344454


Q ss_pred             HHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhh------------------------------------
Q 037178          151 DSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELS------------------------------------  191 (311)
Q Consensus       151 ~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~------------------------------------  191 (311)
                      +|.+.++++.+  | +...+..++.+..+.|-...|.++.++-.                                    
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            56677766652  3 44555666666666665555554443211                                    


Q ss_pred             ------------hcCCCCCCcch-H----HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178          192 ------------SDTELKPDNFT-F----PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       192 ------------~~~~~~p~~~t-~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  254 (311)
                                  ...+-.|.... |    .=.+-++...|+..++.+.++.+...|.+....+-.++.++|...+..++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence                        00111122111 1    122335567788888999999998888776777888999999999999999


Q ss_pred             HHHHhhCCCC---------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          255 VKLFEVMPER---------NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       255 ~~~~~~m~~~---------~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+++++...         +......|..+|...+++++|..+++++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~  393 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY  393 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9999987541         2333578999999999999999999999

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.97  E-value=4.9e-07  Score=77.07  Aligned_cols=91  Identities=7%  Similarity=-0.127  Sum_probs=48.3

Q ss_pred             HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHh
Q 037178          100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTK  176 (311)
Q Consensus       100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~  176 (311)
                      |......+.+.|+.++|...|++.. +.. +.+...|+.+...|...|++++|...|++..+  | +..+|..+..++..
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  144 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQAL-ALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4444444555555555555555555 332 23345555555555555666666555555432  2 34455555555555


Q ss_pred             CCChhhHHHHHHHhhh
Q 037178          177 NELYTDVLSIFVELSS  192 (311)
Q Consensus       177 ~g~~~~a~~~~~~m~~  192 (311)
                      .|++++|.+.|++..+
T Consensus       145 ~g~~~eA~~~~~~al~  160 (296)
T PRK11189        145 GGRYELAQDDLLAFYQ  160 (296)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            5666666655555543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=1.8e-08  Score=90.02  Aligned_cols=217  Identities=12%  Similarity=0.061  Sum_probs=155.2

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC---------------------------
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS---------------------------  130 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~---------------------------  130 (311)
                      +.++|+..|.+... +.-......-+.++|-..+++++++++|+.+.......                           
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            56789999999555 44445667788899999999999999999988322211                           


Q ss_pred             -----chhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch
Q 037178          131 -----NDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT  202 (311)
Q Consensus       131 -----~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t  202 (311)
                           -...+|.++.++|.-.++.+.|.+.|++..+   ....+|+-+-+-+.....+|+|...|+....     .|...
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rh  488 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRH  488 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchh
Confidence                 2345667777777777778888888877653   2556777777777777778888877766533     44444


Q ss_pred             HH---HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 037178          203 FP---CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGF  276 (311)
Q Consensus       203 ~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~  276 (311)
                      |+   -+--.|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++...   .|+..---.+..+
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence            44   44556778888888888888776655 44666677777778888888888888887663   4655555566777


Q ss_pred             HhCCCcchHHHHHHhhhhccCCCCCCcee
Q 037178          277 SENGFSCESFDLLIKMMGCEEGFIPDVIT  305 (311)
Q Consensus       277 ~~~g~~~~a~~l~~~m~~~~~g~~P~~~t  305 (311)
                      ...++.++|+..++++  +  .+.|+..+
T Consensus       568 ~~~~~~~eal~~LEeL--k--~~vP~es~  592 (638)
T KOG1126|consen  568 FSLGRYVEALQELEEL--K--ELVPQESS  592 (638)
T ss_pred             HhhcchHHHHHHHHHH--H--HhCcchHH
Confidence            7788888888888888  3  35666543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.1e-07  Score=76.72  Aligned_cols=217  Identities=9%  Similarity=-0.061  Sum_probs=158.4

Q ss_pred             HHHHHhhcCccchhhhhcCCCCCcccH---HHHHHHHHhcCCCHHHHHHHHHhhccCCCC------hhhHHHHHHhcccC
Q 037178           40 LRSIFKEKSSLSLSAKTNNASTQGLHF---LQEITTLCEESKSLNKALSLLQENLHNADL------KEATGVLLQACGHE  110 (311)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~~a~~~~~~m~~~~~~------~~~~~~ll~~~~~~  110 (311)
                      ++-+++..+.-....|.++.+-|..+|   -+|-+-|-+.| ..+.|+++-+.+.. .||      ....-.+.+-|-..
T Consensus        43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG-EVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc-hHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHh
Confidence            333344444444556666655555554   34556677778 99999999988776 232      12234456667788


Q ss_pred             CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh--------HHHHHHHHHHHhCCChhh
Q 037178          111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL--------FQWNALVSGFTKNELYTD  182 (311)
Q Consensus       111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~--------~~y~~li~~~~~~g~~~~  182 (311)
                      |-++.|+.+|..+. +.| +.-.....-|+..|-+..+|++|.++-+++.+-+.        .-|.-+...+....+++.
T Consensus       121 Gl~DRAE~~f~~L~-de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~  198 (389)
T COG2956         121 GLLDRAEDIFNQLV-DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR  198 (389)
T ss_pred             hhhhHHHHHHHHHh-cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence            99999999999998 544 33445667799999999999999999887654322        246666667777889999


Q ss_pred             HHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178          183 VLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       183 a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  261 (311)
                      |..++++..+   ..|+.+ .--.+-+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++
T Consensus       199 A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         199 ARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999998865   345443 333455677889999999999999999887777888999999999999999988888766


Q ss_pred             CC
Q 037178          262 PE  263 (311)
Q Consensus       262 ~~  263 (311)
                      .+
T Consensus       276 ~~  277 (389)
T COG2956         276 ME  277 (389)
T ss_pred             HH
Confidence            54

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.84  E-value=4.9e-07  Score=76.35  Aligned_cols=216  Identities=12%  Similarity=-0.013  Sum_probs=144.2

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-chhhHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS-NDFIINTRLITM  142 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~ll~~  142 (311)
                      ...-+.+++...| +.+.++   .+... ..|.......+...+...++-+.+..-+++.. ..+.. .+..+.-..-..
T Consensus        37 ~~~~~~Rs~iAlg-~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~-~~~~~~~~~~~~~~~A~i  111 (290)
T PF04733_consen   37 RDFYQYRSYIALG-QYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELL-ADQAGESNEIVQLLAATI  111 (290)
T ss_dssp             HHHHHHHHHHHTT--HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCC-CTS---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-ChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHH-HhccccccHHHHHHHHHH
Confidence            4456677888888 777544   34433 45666666666666655455555555554443 22322 343333333455


Q ss_pred             HHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh----ccCChhh
Q 037178          143 YSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG----GIADVGF  218 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~----~~g~~~~  218 (311)
                      +...|++++|++++..-  .+.......+..|.+.++++.|.+.++.|++   ...| .+...+..++.    ....+.+
T Consensus       112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~  185 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQD  185 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred             HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHH
Confidence            66779999999998876  5666777888999999999999999999986   3334 34444555443    2346899


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCc-chHHHHHHhh
Q 037178          219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFS-CESFDLLIKM  292 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~-~~a~~l~~~m  292 (311)
                      |..+|+++.+. +.++..+.|.+..++...|++++|.+++.+..+.   |..+.-.+|....-.|+. +.+.+.+.++
T Consensus       186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            99999997654 5778899999999999999999999999987753   445555567776677766 6677888888

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.83  E-value=1.2e-06  Score=74.19  Aligned_cols=226  Identities=12%  Similarity=0.015  Sum_probs=180.4

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHH
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSR  153 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~  153 (311)
                      -.| +|.+|.++..+-.+ ..--...|.....+.-..|+.+.+-.++.++. +.--.++..++-+........|+.+.|.
T Consensus        96 ~eG-~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEG-DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcC-cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            358 99999999998776 43445567888888889999999999999998 5533778888888999999999999999


Q ss_pred             HHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-------chHHHHHHHHhccCChhhHHHHH
Q 037178          154 RVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-------FTFPCVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       154 ~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~t~~~li~~~~~~g~~~~a~~~~  223 (311)
                      .-.++..   .++.........+|.+.|++.++..+...|.+ .|+--|+       .+|..+++-....+..+.-...+
T Consensus       174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            8887754   56888999999999999999999999999998 7765544       46788888777777776666666


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------------------------------CChhhH
Q 037178          224 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------------------------------RNLVSW  269 (311)
Q Consensus       224 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------------------------~~~~~y  269 (311)
                      +..-+. .+.+...-.+++.-+.++|+.++|.++.++..+                                  -+.-.+
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~  331 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL  331 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence            655333 355667777888888888888888888775542                                  145678


Q ss_pred             HHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEee
Q 037178          270 NSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVT  308 (311)
Q Consensus       270 ~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~  308 (311)
                      .+|-.-|.+++.|.+|.+.|+..  .  ...|+..+|+-
T Consensus       332 ~tLG~L~~k~~~w~kA~~~leaA--l--~~~~s~~~~~~  366 (400)
T COG3071         332 STLGRLALKNKLWGKASEALEAA--L--KLRPSASDYAE  366 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH--H--hcCCChhhHHH
Confidence            89999999999999999999977  5  35777777653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.81  E-value=1.6e-06  Score=83.02  Aligned_cols=188  Identities=10%  Similarity=-0.005  Sum_probs=153.4

Q ss_pred             HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---------ChHHHHHHHH
Q 037178          102 VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---------NLFQWNALVS  172 (311)
Q Consensus       102 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---------~~~~y~~li~  172 (311)
                      -.+-++...|+..++.+.|+.+. ..|.+....+--++.++|...++.++|+.+|+++.+.         +......|.-
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y  375 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY  375 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence            34667778899999999999999 7786655667788999999999999999999987432         3344578899


Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCC-----------CCCc---chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTEL-----------KPDN---FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS  238 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~-----------~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  238 (311)
                      +|...+++++|..+++++.+ ...           .||.   ..+..++..+...|++.+|++.++.+.... +-|..+.
T Consensus       376 A~ld~e~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~  453 (822)
T PRK14574        376 SLNESEQLDKAYQFAVNYSE-QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLR  453 (822)
T ss_pred             HHHhcccHHHHHHHHHHHHh-cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            99999999999999999976 211           1221   134456777889999999999999997775 7799999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+.+.+...|+..+|++.++....  | +..+......++...|+++.|..+.+..
T Consensus       454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999999999999987663  4 5567778888999999999999988777

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.81  E-value=1.4e-06  Score=74.20  Aligned_cols=191  Identities=7%  Similarity=-0.122  Sum_probs=139.2

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+-..+...| +.++|...|++..+ .+.+...|+.+...+...|+++.|...|+... +.. +-+..++..+..+
T Consensus        65 ~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~  141 (296)
T PRK11189         65 QLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL-ELD-PTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHH
Confidence            45777778889999 99999999999999 55567899999999999999999999999998 544 3346677778899


Q ss_pred             HHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178          143 YSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~  220 (311)
                      +...|++++|.+.|++..+  |+-.....+.......+++++|...|.+... . ..|+...+ .+  .....|+.+++ 
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-~-~~~~~~~~-~~--~~~~lg~~~~~-  215 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-K-LDKEQWGW-NI--VEFYLGKISEE-  215 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-h-CCccccHH-HH--HHHHccCCCHH-
Confidence            9999999999999998653  3322222222234456789999999977543 2 23333222 22  22345666554 


Q ss_pred             HHHHHHHHhC---C---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          221 GVHGMAAKMG---L---IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       221 ~~~~~m~~~g---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +.+..+.+..   .   +.....|..+...|.+.|++++|...|++..+
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~  264 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA  264 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445444321   1   11346899999999999999999999998875

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.80  E-value=1.1e-07  Score=87.62  Aligned_cols=211  Identities=12%  Similarity=0.054  Sum_probs=137.5

Q ss_pred             HHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh
Q 037178           87 LQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL  164 (311)
Q Consensus        87 ~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~  164 (311)
                      +-.+..  +.|+..||..+|.-||..|+++.|- +|.-|+ ....+.+..+++.++.+....++.+.+.       +|..
T Consensus        13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a   83 (1088)
T KOG4318|consen   13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLA   83 (1088)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCch
Confidence            344444  8899999999999999999999999 999998 7788889999999999999999988776       7888


Q ss_pred             HHHHHHHHHHHhCCChhh---HHHHHHHhhh---cCCCCCCcchHHHHHHHHhccCChhhHH---------HHHHHHHHh
Q 037178          165 FQWNALVSGFTKNELYTD---VLSIFVELSS---DTELKPDNFTFPCVIKACGGIADVGFGS---------GVHGMAAKM  229 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~---a~~~~~~m~~---~~~~~p~~~t~~~li~~~~~~g~~~~a~---------~~~~~m~~~  229 (311)
                      .+|++|..+|...|+...   +.+.++....   +.|+.--+.-+-..++++-  +-...+.         .++....+.
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998665   2222222211   1222222222222222221  1111111         112222222


Q ss_pred             CC-CCcHHHHHH---HHHHHHh-cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178          230 GL-IGDVFVSNA---LIAMYGK-CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       230 g~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~  303 (311)
                      +. .|...-++.   +++-... ...+++-..+.....+ ++..+|.+++.+-.-+|+++.|..++.+|  ++.|+.-+.
T Consensus       162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gfpir~  239 (1088)
T KOG4318|consen  162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGFPIRA  239 (1088)
T ss_pred             HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCCCccc
Confidence            21 111111111   1222222 1234444444444444 89999999999999999999999999999  899999988


Q ss_pred             eeEeecc
Q 037178          304 ITVVTVL  310 (311)
Q Consensus       304 ~t~~~li  310 (311)
                      +-|..||
T Consensus       240 HyFwpLl  246 (1088)
T KOG4318|consen  240 HYFWPLL  246 (1088)
T ss_pred             ccchhhh
Confidence            8776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.79  E-value=2.3e-06  Score=67.53  Aligned_cols=190  Identities=10%  Similarity=-0.051  Sum_probs=159.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      .-.|--.|.+.| +...|..-+++..+ .+-+..+|..+...|-+.|..+.|.+.|+... +.. +-+..+.|..-..+|
T Consensus        38 rlqLal~YL~~g-d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQG-DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcC-CCccchhhhhhHHHH
Confidence            456777899999 99999999999999 55556789999999999999999999999988 554 456778888999999


Q ss_pred             hcCChhHHHHHHHhcC-CC----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh
Q 037178          145 LCGFPLDSRRVFDSLK-TR----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~-~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~  218 (311)
                      ..|++++|...|++.. .|    -..+|..+.-+..+.|+++.|...|++-.+   ..|+ ..+...+..-..+.|++-.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchH
Confidence            9999999999999855 44    336888999999999999999999999876   4454 4678888899999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |..+++.....+- ++....-..|..--+.|+.+.+.+.=..+.
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999888874 888888888888888898888777555444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=7e-07  Score=76.90  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=138.0

Q ss_pred             CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHH
Q 037178          110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      .|++++|.+.|++.. ...-.-....|| +--.+-+.|++++|+..|-++.   ..++...-.+...|--..+...|+++
T Consensus       503 ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            478888888888887 444334444555 2334566789999999887764   35667777788888888888999998


Q ss_pred             HHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 037178          187 FVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP--E  263 (311)
Q Consensus       187 ~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~  263 (311)
                      +-+..   .+.| |......|...|-+.|+-.+|.+.+-+--+ -++-+..+..-|..-|....-.++|...|++.-  +
T Consensus       581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq  656 (840)
T KOG2003|consen  581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ  656 (840)
T ss_pred             HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            86654   3445 567888888999999999999988765433 357788888888888999999999999999764  8


Q ss_pred             CChhhHHHHHHHHH-hCCCcchHHHHHHhh
Q 037178          264 RNLVSWNSIICGFS-ENGFSCESFDLLIKM  292 (311)
Q Consensus       264 ~~~~~y~~li~~~~-~~g~~~~a~~l~~~m  292 (311)
                      |+.+-|..||..|. +.|++++|.++++..
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999987665 589999999999998

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.77  E-value=2.5e-06  Score=77.32  Aligned_cols=222  Identities=12%  Similarity=0.003  Sum_probs=159.1

Q ss_pred             HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC---
Q 037178           72 TLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG---  147 (311)
Q Consensus        72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g---  147 (311)
                      .+.+.| ++++|++.++.-.. +......+......+.+.|+.++|..+|..+. +.+ +.+..-|..|..+..-..   
T Consensus        13 il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rN-Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   13 ILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRN-PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCcHHHHHHHHHHHhhhcccc
Confidence            346778 99999999988766 55555666777888889999999999999998 665 344555555665553322   


Q ss_pred             --ChhHHHHHHHhcCC----------------------------------CCh-HHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          148 --FPLDSRRVFDSLKT----------------------------------RNL-FQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       148 --~~~~A~~l~~~m~~----------------------------------~~~-~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                        ..+...++|+++..                                  +++ .+++.|-.-|....+..-..+++...
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~  169 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY  169 (517)
T ss_pred             cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence              45666677776531                                  111 23555555555555555555666655


Q ss_pred             hhc---CC----------CCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178          191 SSD---TE----------LKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       191 ~~~---~~----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      ...   .+          -.|..  .++.-+...|...|++++|.+++++..+.- +-.+..|..-...|-..|++++|.
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa  248 (517)
T PF12569_consen  170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA  248 (517)
T ss_pred             HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            431   11          12333  355666778889999999999999988874 334788999999999999999999


Q ss_pred             HHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178          256 KLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       256 ~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      +..++.++   .|-..-+..+..+.++|++++|.+++...  .+.+.
T Consensus       249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F--tr~~~  293 (517)
T PF12569_consen  249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLF--TREDV  293 (517)
T ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh--cCCCC
Confidence            99999886   45567788899999999999999999988  66555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=6e-07  Score=77.92  Aligned_cols=212  Identities=10%  Similarity=0.016  Sum_probs=169.5

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHH
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSR  153 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~  153 (311)
                      -.| +.-.|..-|+.... .+.+...|.-+...|....+.++....|+... +.+ +-+..+|-.-...+.-.+++++|.
T Consensus       338 L~g-~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~-~ld-p~n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  338 LKG-DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE-DLD-PENPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hcC-CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH-hcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence            446 88889999999888 33344448778888999999999999999998 555 445666666777777788999999


Q ss_pred             HHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          154 RVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       154 ~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      .=|++...   .++..|-.+--+..+.++++++...|++.+.  .++--...|+.....+...+++++|.+.|+...+..
T Consensus       415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            99998763   3777888888888899999999999999875  344456789999999999999999999999877542


Q ss_pred             C-------CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          231 L-------IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       231 ~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      -       .+...+.-+++..-.+ +++..|..++++..+-|.   ..|.+|...-.+.|+.++|+++|++-
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            1       2233444455544455 999999999999998554   68999999999999999999999875

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.72  E-value=1.4e-06  Score=84.08  Aligned_cols=201  Identities=12%  Similarity=0.003  Sum_probs=103.0

Q ss_pred             hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc---hhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-C-hHHHHHHH
Q 037178           97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN---DFIINTRLITMYSLCGFPLDSRRVFDSLKTR-N-LFQWNALV  171 (311)
Q Consensus        97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~-~~~y~~li  171 (311)
                      ...|-..|......+++++|+++.+++....++.-   ..-+|.++++.-..-|.-+...++|++..+- | -..|..|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34455555555555566666666555552222211   1234445555555555555555555555432 2 23455555


Q ss_pred             HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCC
Q 037178          172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~  250 (311)
                      ..|.+.+++++|.++|+.|.+..+  -....|...+..+.+..+-+.|..++.+.++.=- .-........+..-.+.|+
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            666666666666666666553122  3344555555555555555555555555544310 1123344444444455566


Q ss_pred             HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178          251 VEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP  301 (311)
Q Consensus       251 ~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P  301 (311)
                      .+.+..+|+....   +....|+..|+.-.++|+.+.+..+|++.  ...++.|
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv--i~l~l~~ 1667 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV--IELKLSI 1667 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH--HhcCCCh
Confidence            6666666655553   23445666666666666666666666655  4444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.1e-06  Score=75.89  Aligned_cols=221  Identities=12%  Similarity=0.027  Sum_probs=164.1

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhc-c-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENL-H-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      -|..+|..++-.--...     .+..+-+-. . .+-.+.|..++.+-|+-.++.++|...|+... +.+ +.....|+.
T Consensus       297 ~dmdlySN~LYv~~~~s-----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL-kLN-p~~~~aWTL  369 (559)
T KOG1155|consen  297 DDMDLYSNVLYVKNDKS-----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL-KLN-PKYLSAWTL  369 (559)
T ss_pred             hhHHHHhHHHHHHhhhH-----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH-hcC-cchhHHHHH
Confidence            35567777665443322     222222221 1 44556788888888888899999999999988 666 455678888


Q ss_pred             HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA  214 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g  214 (311)
                      +.+-|....+...|..-+++..   ..|-..|-.|..+|.-.+.+.-|+-.|++...   ++| |...|.+|-++|.+.+
T Consensus       370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~  446 (559)
T KOG1155|consen  370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLN  446 (559)
T ss_pred             hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhc
Confidence            8899999999999999998755   45778899999999999999999999999876   677 5788999999999999


Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhh---HHHHHHHHHhCCCcch
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------RNLVS---WNSIICGFSENGFSCE  284 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~---y~~li~~~~~~g~~~~  284 (311)
                      +.++|.+.|.+....| ..+...+..|.+.|-+.++.++|-..|++-.+       .+..+   ---|..-+.+.+++++
T Consensus       447 ~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~  525 (559)
T KOG1155|consen  447 RLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE  525 (559)
T ss_pred             cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence            9999999999988877 44668899999999999999999888876553       22211   1114455666666666


Q ss_pred             HHHHHHhh
Q 037178          285 SFDLLIKM  292 (311)
Q Consensus       285 a~~l~~~m  292 (311)
                      |.......
T Consensus       526 As~Ya~~~  533 (559)
T KOG1155|consen  526 ASYYATLV  533 (559)
T ss_pred             HHHHHHHH
Confidence            66544333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1e-06  Score=77.70  Aligned_cols=239  Identities=13%  Similarity=0.035  Sum_probs=162.7

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+......-..-+-..+ ++.+..++++...+ .++....+..-|.++...|+..+-..+=..++ + ..+....+|-++
T Consensus       242 ~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-~-~yP~~a~sW~aV  318 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGC-RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV-D-LYPSKALSWFAV  318 (611)
T ss_pred             hcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH-H-hCCCCCcchhhH
Confidence            34444445555555667 77777777777777 66666666666666677777666655555565 2 224456667667


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHH----------------------------------HHhCCChhh
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSG----------------------------------FTKNELYTD  182 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~----------------------------------~~~~g~~~~  182 (311)
                      .-.|.-.|+.++|++.|.+-..   .-...|-...+.                                  |.+.++.+-
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence            7777777777777777766432   122333333333                                  344555566


Q ss_pred             HHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----C--CCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178          183 VLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----G--LIGDVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       183 a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      |.+.|.+..   ++-| |...++-+--.....+.+.+|..+|+..+..    +  ..-...+++.|...|.+.+++++|.
T Consensus       399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            666665553   3555 4556666666666778899999988876622    1  1124567899999999999999999


Q ss_pred             HHHhhCC---CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEeec
Q 037178          256 KLFEVMP---ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTV  309 (311)
Q Consensus       256 ~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~l  309 (311)
                      ..|++..   ..|..+|.++.-.|...|+++.|.+.|.+.  .  .+.||..+...+
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa--L--~l~p~n~~~~~l  528 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA--L--ALKPDNIFISEL  528 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH--H--hcCCccHHHHHH
Confidence            9999876   478899999999999999999999999988  4  688887654443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.67  E-value=1.7e-06  Score=77.75  Aligned_cols=195  Identities=10%  Similarity=0.006  Sum_probs=145.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCC-Cch
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLH-----NADL----KEATGVLLQACGHEKDIEIGKRVHELVSA----STQF-SND  132 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~-~~~  132 (311)
                      +.+-..|...+ ++++|..+|+++..     .-++    ..+++.|-.+|.+.|++++|...++...+    ..|. .++
T Consensus       245 ~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~  323 (508)
T KOG1840|consen  245 NILALVYRSLG-KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE  323 (508)
T ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence            44666778889 99999999999986     1122    34567777789999999999888876652    1121 222


Q ss_pred             h-hHHHHHHHHHHhcCChhHHHHHHHhcC--------CCC---hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-----C
Q 037178          133 F-IINTRLITMYSLCGFPLDSRRVFDSLK--------TRN---LFQWNALVSGFTKNELYTDVLSIFVELSSDT-----E  195 (311)
Q Consensus       133 ~-~~~~~ll~~~~~~g~~~~A~~l~~~m~--------~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~  195 (311)
                      + ..++.+...|+..+++++|..++....        +.+   ..+|+.|...|.+.|++++|.++|++.....     +
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence            2 245667778888899999998887643        123   2579999999999999999999999874411     1


Q ss_pred             CCCC-cchHHHHHHHHhccCChhhHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          196 LKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA----KMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       196 ~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..+. ...++.+-..|.+.+..++|.++|.+-.    ..|  .+-...+|..|...|.+.|++++|.++.+...
T Consensus       404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            1222 4578888999999999999998887643    233  23346899999999999999999999988765

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.65  E-value=3.1e-08  Score=55.10  Aligned_cols=35  Identities=37%  Similarity=0.655  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~  303 (311)
                      .+||++|.+|++.|++++|.++|++|  .+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M--~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEM--LERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHH--HHcCCCCCC
Confidence            47999999999999999999999999  899999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=4.1e-07  Score=75.21  Aligned_cols=200  Identities=12%  Similarity=-0.025  Sum_probs=167.9

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      .|-+.||--|-++|.+-. ++..|+.+|.+-.. .+-|+....-+.+.+-..++.+.+.++|+... +.. +.++....+
T Consensus       253 ~~~~dTfllLskvY~rid-QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl-k~~-~~nvEaiAc  329 (478)
T KOG1129|consen  253 FPHPDTFLLLSKVYQRID-QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL-KLH-PINVEAIAC  329 (478)
T ss_pred             CCchhHHHHHHHHHHHhc-cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH-hcC-Cccceeeee
Confidence            355668888999999999 99999999999998 55565556778888889999999999999988 543 456666777


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhcc
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGI  213 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~  213 (311)
                      +...|.-.|+.|-|+..|+++.+   .+...|+.+.-+|.-.++++-++.-|++... .--.|+.  ..|-.+-......
T Consensus       330 ia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~i  408 (478)
T KOG1129|consen  330 IAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTI  408 (478)
T ss_pred             eeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEec
Confidence            77888888999999999998765   4778899999999999999999999999876 5445554  4577777888899


Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER  264 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  264 (311)
                      ||+..|.+.|+.....+ .-+...+|.|.-.-.+.|++++|..++......
T Consensus       409 GD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  409 GDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             cchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            99999999999887775 457789999999999999999999999987753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.60  E-value=2.1e-05  Score=62.26  Aligned_cols=190  Identities=9%  Similarity=-0.111  Sum_probs=152.4

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT  175 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~  175 (311)
                      +..-+.-.|...|+...|..-+++.. +.. +-+..++..+-..|-+.|+.+.|.+-|++..   ..+....|.--.=+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL-~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKAL-EHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            35556677889999999999999998 655 4567788999999999999999999999854   346677888888889


Q ss_pred             hCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178          176 KNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  254 (311)
                      ..|++++|...|++... ...-| -..||..+.-+..+.|+.+.|.+.+.+..+.. +-...+.-.+.+...+.|++..|
T Consensus       115 ~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            99999999999999877 33333 35688899888999999999999999988875 33456777888888999999999


Q ss_pred             HHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          255 VKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       255 ~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...++....   .+....-..|..--+.|+.+.+.+.=..+
T Consensus       193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999988775   34444555566677788888877766666

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.57  E-value=1e-05  Score=78.41  Aligned_cols=219  Identities=11%  Similarity=0.006  Sum_probs=175.3

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII  135 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  135 (311)
                      +...|-.-|..+.+.+ +.++|.+++++... +.+.     ...|.++++.-...|.-+...++|+++. +..  -...+
T Consensus      1457 SSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qyc--d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QYC--DAYTV 1532 (1710)
T ss_pred             cchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hhc--chHHH
Confidence            4456889999999999 99999999999988 5443     2357777777777788889999999998 543  34567


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cchHHHHHHH
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NFTFPCVIKA  209 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~  209 (311)
                      |..|...|.+.++.++|-++|+.|.++   ....|...+..+.+.++-++|..++++..+   .-|.   .....-.+.-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHH
Confidence            889999999999999999999999864   667899999999999999999999999876   3454   2334455555


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCcc
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL------VSWNSIICGFSENGFSC  283 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~y~~li~~~~~~g~~~  283 (311)
                      -.+.|+.++++.+|+...... +--...|+.+|++-.+.|+.+.++++|++..+...      ..|..-+.---+.|+-+
T Consensus      1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            679999999999999998875 44678999999999999999999999999886332      35666665555666655


Q ss_pred             hHHHH
Q 037178          284 ESFDL  288 (311)
Q Consensus       284 ~a~~l  288 (311)
                      .++.+
T Consensus      1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred             hHHHH
Confidence            54443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.54  E-value=1.1e-07  Score=52.82  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD  199 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~  199 (311)
                      +||++|.+|++.|++++|.++|++|.+ .|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCC
Confidence            577777777777777777777777777 777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.54  E-value=2.8e-05  Score=72.40  Aligned_cols=228  Identities=14%  Similarity=0.122  Sum_probs=132.4

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...|-.|-..|-+.| +.++++..+-..-. .+.|...|..+-....+.|.++.|.-.|.++. +.. +++...+=--
T Consensus       171 ~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-~~~-p~n~~~~~er  247 (895)
T KOG2076|consen  171 RNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI-QAN-PSNWELIYER  247 (895)
T ss_pred             cchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-hcC-CcchHHHHHH
Confidence            34455666666666666 66666666555444 45555666666666666666666666666666 443 2333332234


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCC--------------------------------------------ChHHHHHHHHHHH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTR--------------------------------------------NLFQWNALVSGFT  175 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~--------------------------------------------~~~~y~~li~~~~  175 (311)
                      ...|-+.|+...|...|.++.+.                                            +...+|.++..|.
T Consensus       248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l  327 (895)
T KOG2076|consen  248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL  327 (895)
T ss_pred             HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence            55555666666665555554321                                            2233667777777


Q ss_pred             hCCChhhHHHHHHHhhhcCCCC----------------------CCcchHH----HHHHHHhccCChhhHHHHHHHHHHh
Q 037178          176 KNELYTDVLSIFVELSSDTELK----------------------PDNFTFP----CVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~~~~~~----------------------p~~~t~~----~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +...++.|.....++.. ....                      |+...|.    -++-++.+....+....+...+.+.
T Consensus       328 ~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~  406 (895)
T KOG2076|consen  328 KNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED  406 (895)
T ss_pred             HhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence            77777777777666654 1111                      1112221    1222334444444555555555555


Q ss_pred             CC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          230 GL--IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       230 g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+  .-++..|.-+.++|...|++.+|.++|..+..    .+...|-.+..+|...|..+.|.+.|+..
T Consensus       407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            53  23566777777777777777777777777764    35566777777777777777777777776

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.52  E-value=3.3e-05  Score=67.63  Aligned_cols=218  Identities=10%  Similarity=-0.026  Sum_probs=140.5

Q ss_pred             HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHH---HHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           72 TLCEESKSLNKALSLLQENLH-NADLKEATGV---LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      .+...| ++++|.+++++..+ .+.|...+..   ........+..+.+.+.++..  ....+........+...+...|
T Consensus        52 ~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          52 SAWIAG-DLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC
Confidence            455778 99999999999888 5555545442   222222345555555555542  2222333445556777889999


Q ss_pred             ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHH
Q 037178          148 FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGV  222 (311)
Q Consensus       148 ~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~  222 (311)
                      ++++|...+++..+   .+...+..+...+...|++++|...+++........|+.  ..|..+...+...|++++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999998763   366788999999999999999999999886512112332  2455788889999999999999


Q ss_pred             HHHHHHhCC-CCcHHHH-H--HHHHHHHhcCCHHHHHHH---HhhCCC--C-ChhhHH--HHHHHHHhCCCcchHHHHHH
Q 037178          223 HGMAAKMGL-IGDVFVS-N--ALIAMYGKCAFVEEMVKL---FEVMPE--R-NLVSWN--SIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       223 ~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~--~-~~~~y~--~li~~~~~~g~~~~a~~l~~  290 (311)
                      +++...... .+..... +  .++.-+...|..+.+.+.   ...-..  + ....++  ....++...|+.+.|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            999864432 1222111 1  333344444533333332   111111  1 122233  56777888999999999999


Q ss_pred             hh
Q 037178          291 KM  292 (311)
Q Consensus       291 ~m  292 (311)
                      .+
T Consensus       289 ~l  290 (355)
T cd05804         289 AL  290 (355)
T ss_pred             HH
Confidence            98

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=3.5e-06  Score=71.18  Aligned_cols=194  Identities=15%  Similarity=0.031  Sum_probs=133.4

Q ss_pred             CCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CC-CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178           59 ASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NA-DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII  135 (311)
Q Consensus        59 ~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  135 (311)
                      ..|.......+...+...+ +-+.++.-++....  .. .+..........+...|++++|.+++...       .+...
T Consensus        62 ~~~~l~av~~la~y~~~~~-~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~  133 (290)
T PF04733_consen   62 SSPELQAVRLLAEYLSSPS-DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLEL  133 (290)
T ss_dssp             SSCCCHHHHHHHHHHCTST-THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHH
T ss_pred             CChhHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccH
Confidence            3555555544444443334 56666666655544  22 23333333445667889999888876532       34556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCCC--ChH---HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKTR--NLF---QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      ....+..|.+.++++.|.+.++.|.+-  |..   ...+++..+...+++.+|..+|+++.+  ...++..+.+.+..++
T Consensus       134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~  211 (290)
T PF04733_consen  134 LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCH  211 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHH
Confidence            667899999999999999999999853  332   234445554455689999999999875  3567888899999999


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhCCC
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV-EEMVKLFEVMPE  263 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  263 (311)
                      ...|++++|.+++.+....+ +-+..+...++.+..-.|+. +.+.+.+.++.+
T Consensus       212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            99999999999999987655 44677777788888888887 778889998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.51  E-value=1.3e-07  Score=52.22  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178          266 LVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP  301 (311)
Q Consensus       266 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P  301 (311)
                      +.+||++|.+|++.|+++.|.++|++|  ++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M--~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEM--KEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHH--HHhCCCC
Confidence            368999999999999999999999999  7899998

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.1e-05  Score=69.68  Aligned_cols=211  Identities=9%  Similarity=-0.031  Sum_probs=165.1

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--C-CCchhhH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--Q-FSNDFII  135 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g-~~~~~~~  135 (311)
                      ....++|-++---|.--| +..+|.+.|.+... .+.-...|....+.++-.|.-+.|...+..+- +.  | ..|.  .
T Consensus       309 P~~a~sW~aVg~YYl~i~-k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa-rl~~G~hlP~--L  384 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIG-KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA-RLMPGCHLPS--L  384 (611)
T ss_pred             CCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH-HhccCCcchH--H
Confidence            346678988888888889 99999999998887 44446678889999999999999988888765 32  1 2232  2


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCC----CcchHHHHH
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKP----DNFTFPCVI  207 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~t~~~li  207 (311)
                      |  +---|.+.+.++.|.+.|.+..   ..|....+-+.-.....+.+.+|...|+...... .+.+    -.-+++.|-
T Consensus       385 Y--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG  462 (611)
T KOG1173|consen  385 Y--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG  462 (611)
T ss_pred             H--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence            2  4556788899999999998865   3477888888877788899999999998875311 1111    234688999


Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP--ERNLVSWNSIICGFS  277 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~y~~li~~~~  277 (311)
                      .++.+.+.+++|...++...... +-+..+|.++.-.|...|+++.|.+.|.+..  +||-.+-..+++-+.
T Consensus       463 H~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  463 HAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            99999999999999999988875 6689999999999999999999999999887  576655555555443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.45  E-value=2.9e-07  Score=50.81  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP  198 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p  198 (311)
                      .+||++|.+|++.|+++.|.++|++|++ .|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence            4566666666666666666666666666 66665

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.44  E-value=8.1e-06  Score=76.44  Aligned_cols=227  Identities=11%  Similarity=0.047  Sum_probs=125.2

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChh------hHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-----NADLKE------ATGVLLQACGHEKDIEIGKRVHELVSASTQF  129 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~  129 (311)
                      ......|.+-.-+...| ++++|...|.....     ..+|..      +---+.+..-..++.+.|.+.|..+. +.. 
T Consensus       450 ip~E~LNNvaslhf~~g-~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il-keh-  526 (1018)
T KOG2002|consen  450 IPPEVLNNVASLHFRLG-NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL-KEH-  526 (1018)
T ss_pred             CCHHHHHhHHHHHHHhc-ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHC-
Confidence            56667888888888999 99999999988776     223332      22224445556678888888888887 432 


Q ss_pred             Cchh-hHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178          130 SNDF-IINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC  205 (311)
Q Consensus       130 ~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~  205 (311)
                       |+- ..|--|...--..+...+|...++...+   .+...|+-+-..+.+...+..|.+-|+...+..-..+|.++...
T Consensus       527 -p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  527 -PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             -chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence             221 1222222112223566677777766542   34445555555555555666666555554331222244444444


Q ss_pred             HHHHHh------------ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHH
Q 037178          206 VIKACG------------GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWN  270 (311)
Q Consensus       206 li~~~~------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~  270 (311)
                      |-+.|.            ..+..++|.++|...++.. +-|...-|-+.-.++..|++.+|..||.+..+   .+..+|-
T Consensus       606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l  684 (1018)
T KOG2002|consen  606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL  684 (1018)
T ss_pred             hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence            444332            1223445555555555443 33555555555555556666666666655554   2334555


Q ss_pred             HHHHHHHhCCCcchHHHHHHhh
Q 037178          271 SIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       271 ~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+..+|+..|++..|+++|+.-
T Consensus       685 Nlah~~~e~~qy~~AIqmYe~~  706 (1018)
T KOG2002|consen  685 NLAHCYVEQGQYRLAIQMYENC  706 (1018)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1.1e-05  Score=70.28  Aligned_cols=189  Identities=11%  Similarity=0.055  Sum_probs=150.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |--+-.+|+... +.++....|..... .+-|+.+|..-.....-.+++++|..-|+..+ ... +-+...|--+--+..
T Consensus       363 yI~~a~~y~d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai-~L~-pe~~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  363 YIKRAAAYADEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI-SLD-PENAYAYIQLCCALY  439 (606)
T ss_pred             HHHHHHHHhhhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-hcC-hhhhHHHHHHHHHHH
Confidence            777777899999 99999999999999 66677888888777778889999999999988 544 345667766777777


Q ss_pred             hcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-------cchH--HHHHHHHhc
Q 037178          145 LCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-------NFTF--PCVIKACGG  212 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~t~--~~li~~~~~  212 (311)
                      |.+++++++..|++.+++   -...||-....+...++++.|.+.|+...+   +.|+       ..++  -.++- +.-
T Consensus       440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~-~qw  515 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLV-LQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhh-hch
Confidence            889999999999998753   557899999999999999999999998765   3343       1111  11111 123


Q ss_pred             cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .+++..|..++....+.. +-....|-.|...-...|++++|.++|++-.
T Consensus       516 k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  516 KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            489999999999887765 4467899999999999999999999999754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.40  E-value=2e-05  Score=64.77  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMPE--RN----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+...|.+.|++++|...+++..+  |+    ...+..+..++...|+.++|..+++.+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455678899999999999998864  32    358889999999999999999999988

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.39  E-value=0.00025  Score=64.57  Aligned_cols=226  Identities=11%  Similarity=0.083  Sum_probs=156.7

Q ss_pred             Cccc-HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhH-HHHHHhccc-----CCChhHHHHHHHHHHhhcC------
Q 037178           62 QGLH-FLQEITTLCEESKSLNKALSLLQENLHNADLKEAT-GVLLQACGH-----EKDIEIGKRVHELVSASTQ------  128 (311)
Q Consensus        62 ~~~~-~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~-~~ll~~~~~-----~~~~~~a~~~~~~m~~~~g------  128 (311)
                      |..+ .......+.+.| +.++|..+|..+....|+...| ..+..+..-     ..+.+...++++++.....      
T Consensus        36 Dk~~~~E~rA~ll~kLg-~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~  114 (517)
T PF12569_consen   36 DKLAVLEKRAELLLKLG-RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR  114 (517)
T ss_pred             CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence            4333 455666778889 9999999999999955555555 444444421     2246667777777652211      


Q ss_pred             -----CCch-------------------hhHHHHHHHHHHhcCChhHHHHHHHhcC------------------CCCh--
Q 037178          129 -----FSND-------------------FIINTRLITMYSLCGFPLDSRRVFDSLK------------------TRNL--  164 (311)
Q Consensus       129 -----~~~~-------------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~------------------~~~~--  164 (311)
                           +..+                   +.+++.|-..|....+.+-..+++..+.                  .|..  
T Consensus       115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l  194 (517)
T PF12569_consen  115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL  194 (517)
T ss_pred             HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence                 0000                   1233334444443333344444444431                  1223  


Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .+|.-+...|-..|++++|++.+++..+   ..|+ ...|.+-.+.+-+.|++++|.+.++...+.. .-|..+-+....
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aK  270 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHH
Confidence            2446678888899999999999999876   4576 4578888899999999999999999998887 458999999999


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCCh----------hhH--HHHHHHHHhCCCcchHHHHHHhh
Q 037178          244 MYGKCAFVEEMVKLFEVMPERNL----------VSW--NSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~~~~----------~~y--~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+.++|++++|.+++......+.          ..|  .....+|.+.|++..|++-|...
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999988876442          133  44567899999999988877666

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.35  E-value=0.0003  Score=63.77  Aligned_cols=223  Identities=11%  Similarity=-0.037  Sum_probs=156.6

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      .+|+.--..|.+.+ .++-|..+|....+ .+-+...|......--..|..+....++..+. .. ++-....|-...+-
T Consensus       517 ~tw~~da~~~~k~~-~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav-~~-~pkae~lwlM~ake  593 (913)
T KOG0495|consen  517 STWLDDAQSCEKRP-AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV-EQ-CPKAEILWLMYAKE  593 (913)
T ss_pred             hHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hh-CCcchhHHHHHHHH
Confidence            35666667777777 78888888888777 55666777777776667788888888888876 33 34555666667777


Q ss_pred             HHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          143 YSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      +...|++..|..++.+.-+   .+...|-+-+..-..+..++.|..+|.+...   ..|+...|.--+..---.+.+++|
T Consensus       594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHH
Confidence            7788888888888877643   2556777788888888888888888887754   567777776666666666777777


Q ss_pred             HHHHHHHHHh---------------------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 037178          220 SGVHGMAAKM---------------------------------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---  263 (311)
Q Consensus       220 ~~~~~~m~~~---------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---  263 (311)
                      .+++++..+.                                 .++.....|-.|.+.--+.|.+-.|..++++..-   
T Consensus       671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            7777665543                                 1222344455555555555666666666665542   


Q ss_pred             CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          264 RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       264 ~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .|...|-..|..-.+.|..+.|..++.+.
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKA  779 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678888888889999988888887777

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=7.8e-06  Score=72.50  Aligned_cols=214  Identities=13%  Similarity=0.061  Sum_probs=164.9

Q ss_pred             HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178           73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      +.+.| ++.+|.=.|+.... .+-+...|--|.......++-..|+..+.+.. +.. +-+..+.-+|--.|...|.-.+
T Consensus       295 lm~nG-~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl-~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNG-DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL-ELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcC-CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH-hcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            45778 89999999998888 66678889988888888888888999888887 554 4466777778888899999999


Q ss_pred             HHHHHHhcCC--C----------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          152 SRRVFDSLKT--R----------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       152 A~~l~~~m~~--~----------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      |.+.|+....  |          +...-+.  +.+.....+....++|-++-...+.++|...+..|---|--.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            9999887631  1          1110000  233334455677778877765466556666677777777888999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLV-SWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~-~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...|+..+... +-|..+||-|...++...+-++|...|++..+  |+.+ ++-.|.-+|...|.+++|.+.|-+.
T Consensus       450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999998876 66889999999999999999999999999985  7654 6666777889999999998877654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=0.00014  Score=63.65  Aligned_cols=132  Identities=11%  Similarity=0.001  Sum_probs=109.0

Q ss_pred             HHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhh
Q 037178          143 YSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGF  218 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~  218 (311)
                      +...|+.++|++.++.+.  .| |..-+......+.+.|+.++|.+.++++..   ..|+. ...-.+-.++.+.|+..+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence            445688999999998875  34 666777888899999999999999999976   66774 456677788999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |..++++..... +-|...|..|-.+|.+.|+..+|..-.              -.+|...|+++.|...+...
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHH
Confidence            999999887765 778899999999999999998888744              46788889999998888887

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=1.1e-05  Score=73.42  Aligned_cols=208  Identities=8%  Similarity=-0.024  Sum_probs=149.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      .+...+...| -..+|+.+|++.       ..|.-+|.+|+..|+..+|..+..+-. +  -+||...|..|.+......
T Consensus       403 ~laell~slG-itksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  403 LLAELLLSLG-ITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             HHHHHHHHcc-hHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhhccChH
Confidence            4455666778 889999999874       456777888888898888988888877 4  3788899998888888888


Q ss_pred             ChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178          148 FPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       148 ~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m  226 (311)
                      -+++|.++++..-.+   +-..+.....++++++++.+.|+.-.+   +.| -..||-.+-.+..+.++++.|.+.|..-
T Consensus       472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            888888888775433   111111122336788888888877654   223 3456666666677778888888777766


Q ss_pred             HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178          227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~  293 (311)
                      .... +-+...||.+-.+|.+.|+-.+|...+.+..+   .+...|...+....+-|.+++|++.+.+|.
T Consensus       546 vtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  546 VTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             hhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            5543 44567888888888888888888888888775   444567777777888888888888887773

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=7.7e-05  Score=65.05  Aligned_cols=232  Identities=9%  Similarity=-0.047  Sum_probs=113.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      ++..|---+.+=.+.. .+..|..+|++... .+.-...|--.+..--..|++..|.++|+.-.   ...|+...|++.|
T Consensus       106 ~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI  181 (677)
T KOG1915|consen  106 NITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFI  181 (677)
T ss_pred             cchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHH
Confidence            3334444444444444 55555555555544 22222233333333334455555555555443   2245555555555


Q ss_pred             HHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCcchHHHHHHHHhccCChh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~  217 (311)
                      +.=.+-..++.|..++++..  .|++.+|--...-=-+.|+...|..+|+...+..|-. -+...|.+...-=.+...++
T Consensus       182 ~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E  261 (677)
T KOG1915|consen  182 KFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE  261 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555432  4555555554444445555555555555543311110 01122222222223444455


Q ss_pred             hHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHh--------hCCC---CChhhHHHHHHHHHhCCCcch
Q 037178          218 FGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFE--------VMPE---RNLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~---~~~~~y~~li~~~~~~g~~~~  284 (311)
                      .|.-++....+. ++-+  ...|..+...--+-|+.....+..-        ++..   -|..+|--.+.---..|+.+.
T Consensus       262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~  340 (677)
T KOG1915|consen  262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDR  340 (677)
T ss_pred             HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHH
Confidence            555555554443 2222  3444444444334444433333221        1111   255677778888888899999


Q ss_pred             HHHHHHhhhhccCCCCC
Q 037178          285 SFDLLIKMMGCEEGFIP  301 (311)
Q Consensus       285 a~~l~~~m~~~~~g~~P  301 (311)
                      ..++|++.  . .++.|
T Consensus       341 Ire~yErA--I-anvpp  354 (677)
T KOG1915|consen  341 IRETYERA--I-ANVPP  354 (677)
T ss_pred             HHHHHHHH--H-ccCCc
Confidence            99999998  3 45666

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.33  E-value=1.7e-05  Score=74.35  Aligned_cols=182  Identities=12%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh------------
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL------------  145 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~------------  145 (311)
                      ...+|...++.... ...++..+..+...+.....+..|..-|+.+..+....+|.++.-+|.+.|.+            
T Consensus       545 ~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~  624 (1018)
T KOG2002|consen  545 NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE  624 (1018)
T ss_pred             CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence            45555555555555 44444444444445555555555555444444222233565655556665542            


Q ss_pred             cCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178          146 CGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV  222 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~  222 (311)
                      .+..++|.++|.+..+   .|..+-|-+..+++..|++.+|..+|.+.++ ... -+..+|..+.++|...|++..|.++
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIqm  702 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQM  702 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence            2446677777776553   3667777788888888888888888888876 433 3445677888888888888888888


Q ss_pred             HHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          223 HGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       223 ~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |+...+. +-..+..+.+.|..++-++|++.+|.+......
T Consensus       703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            8776544 434567888888888888888888888776655

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.32  E-value=6.3e-05  Score=70.13  Aligned_cols=188  Identities=10%  Similarity=0.004  Sum_probs=131.2

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----CCh---------------
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----RNL---------------  164 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~---------------  164 (311)
                      ++.+...++.+.|.+.++....+.+-.-+...++.+...|.+..+++.|......+..    +|.               
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            3334444444555555555552233344556677788888888888888777766543    111               


Q ss_pred             -------HHHH----HHHHHHHhCCChhhHHHHHHHhhhcCCCCC--CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178          165 -------FQWN----ALVSGFTKNELYTDVLSIFVELSSDTELKP--DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       165 -------~~y~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  231 (311)
                             .+|+    -++-++......+....+...... .++.|  +..-|.-+.+++...|++.+|..++..+.....
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence                   1121    123334444444444444444444 55434  456799999999999999999999999988766


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          232 IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .-+..+|-.+..+|...|..++|.+.|+...+  | +...--+|-..+-+.|+.++|.+.++.|
T Consensus       446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            66788999999999999999999999999986  3 3345556777889999999999999998

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.31  E-value=6.9e-05  Score=61.60  Aligned_cols=183  Identities=9%  Similarity=-0.116  Sum_probs=110.9

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-Ch---hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh-h
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNAD-LK---EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF-I  134 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~  134 (311)
                      ......+-.+...+...| ++++|...|++.....| +.   .++..+..++...|++++|...++.+.+...-.+.. .
T Consensus        30 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSG-DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            445556777788888889 99999999988877333 32   356667778888899999999999887222211211 1


Q ss_pred             HHHHHHHHHHhc--------CChhHHHHHHHhcCC--CCh-HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          135 INTRLITMYSLC--------GFPLDSRRVFDSLKT--RNL-FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       135 ~~~~ll~~~~~~--------g~~~~A~~l~~~m~~--~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      ++..+..++.+.        |+.++|.+.|+.+.+  |+. ..+..+..              ...+.. .   .. ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--------------~~~~~~-~---~~-~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--------------MDYLRN-R---LA-GKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--------------HHHHHH-H---HH-HHH
Confidence            333344444443        566777777766542  221 12211111              000000 0   00 001


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKMGL--IGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..+...+.+.|++++|...+....+..-  +.....+..+...|.+.|++++|...++.+.
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2345567777888888888888776531  2235677788888888888888888777654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.30  E-value=0.00032  Score=56.65  Aligned_cols=164  Identities=12%  Similarity=-0.048  Sum_probs=128.8

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS  172 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~  172 (311)
                      |... .-.-..+...|+-+....+.....  ...+-|....+.+.....+.|++.+|...|.+...   +|..+|+.+--
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence            4444 455556666777777777766654  23355666777788888999999999999998763   58899999999


Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV  251 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  251 (311)
                      +|-+.|++++|..-|.+..+   +.|+ ...++.+.-.+.-.|+.+.|+.++......+ .-|..+-..+.......|++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence            99999999999999988876   5665 4567888888888999999999998887765 44777888888889999999


Q ss_pred             HHHHHHHhhCCCCCh
Q 037178          252 EEMVKLFEVMPERNL  266 (311)
Q Consensus       252 ~~A~~~~~~m~~~~~  266 (311)
                      ++|.++...-..+..
T Consensus       219 ~~A~~i~~~e~~~~~  233 (257)
T COG5010         219 REAEDIAVQELLSEQ  233 (257)
T ss_pred             HHHHhhccccccchh
Confidence            999999887765433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.30  E-value=0.00039  Score=63.09  Aligned_cols=226  Identities=13%  Similarity=0.013  Sum_probs=137.9

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +...|-+-+..-.+.. .+++|..+|.+.+...|+...|.--++.---.+..++|.+++++.. +. ++.=...|-.+..
T Consensus       617 seeiwlaavKle~en~-e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-k~-fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  617 SEEIWLAAVKLEFEND-ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL-KS-FPDFHKLWLMLGQ  693 (913)
T ss_pred             cHHHHHHHHHHhhccc-cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-Hh-CCchHHHHHHHhH
Confidence            4445555555555555 6666666666655544444444444444444555566666665554 21 1122234445555


Q ss_pred             HHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178          142 MYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~  218 (311)
                      .+-+.++++.|.+.|..-.+  | .+..|-.+...=-+.|..-+|..++++-+- .+ .-|...|...|+.=.+.|..+.
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl-kN-Pk~~~lwle~Ir~ElR~gn~~~  771 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL-KN-PKNALLWLESIRMELRAGNKEQ  771 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-cC-CCcchhHHHHHHHHHHcCCHHH
Confidence            55555666666666555432  2 444566666666677777888888877654 22 2356677788888888888888


Q ss_pred             HHHHHHHHHHh-----------------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---h
Q 037178          219 GSGVHGMAAKM-----------------------------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---L  266 (311)
Q Consensus       219 a~~~~~~m~~~-----------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~  266 (311)
                      |..+..+..+.                             .+..|..+.-++...|....++++|.+.|.+..+.|   -
T Consensus       772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G  851 (913)
T KOG0495|consen  772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG  851 (913)
T ss_pred             HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence            87776665553                             224455555566666666667788888888777532   2


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+|--+...+.++|.-++-.+++..-
T Consensus       852 D~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  852 DAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            57777788888888777777777665

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.29  E-value=6.3e-07  Score=48.21  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      ++||+||++|++.|++++|.++|++|  .+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M--~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEM--RERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHH--hHCcC
Confidence            47888888888888888888888888  66664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=0.00021  Score=62.63  Aligned_cols=195  Identities=11%  Similarity=0.003  Sum_probs=134.0

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhh---HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH-
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEA---TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR-  138 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~-  138 (311)
                      ..|..+...+...| +.+.+...+.+... .+.+...   .......+...|++++|.+++++.. +.. +.|...+.. 
T Consensus         7 ~a~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~-P~~~~a~~~~   83 (355)
T cd05804           7 LGHAAAALLLLLGG-ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL-DDY-PRDLLALKLH   83 (355)
T ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCcHHHHHHh
Confidence            34666666777778 88888777777666 3333222   2222334567899999999999988 443 334444442 


Q ss_pred             --HHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc
Q 037178          139 --LITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG  212 (311)
Q Consensus       139 --ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~  212 (311)
                        +.......|..+.+.+.++....  + .......+...+...|++++|...+++..+   ..|+ ...+..+...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence              22222234666677777765332  2 334455667788899999999999999976   3454 5567788889999


Q ss_pred             cCChhhHHHHHHHHHHhCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178          213 IADVGFGSGVHGMAAKMGL-IGDV--FVSNALIAMYGKCAFVEEMVKLFEVMPER  264 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~  264 (311)
                      .|++++|..+++...+..- .++.  ..|..+...+...|++++|.+++++...+
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            9999999999998876532 2232  34567888999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=98.26  E-value=0.0005  Score=59.02  Aligned_cols=221  Identities=9%  Similarity=-0.038  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      ++.+-..+...+ ..++|+.+..++....|+ ..+|+.--..+...| +++++...++.+. +.. +-+..+|+..--.+
T Consensus        40 ~~~~ra~l~~~e-~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~n-pknyqaW~~R~~~l  116 (320)
T PLN02789         40 MDYFRAVYASDE-RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA-EDN-PKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHcCC-CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHC-CcchHHhHHHHHHH
Confidence            344444455566 999999999999984444 445665555555666 5799999999988 554 44555676555555


Q ss_pred             HhcCCh--hHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc---CC
Q 037178          144 SLCGFP--LDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI---AD  215 (311)
Q Consensus       144 ~~~g~~--~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~---g~  215 (311)
                      .+.|+.  +++..+++.+.+   .|..+|+....++...|+++++++.++++.+ .+.. |...|+.....+.+.   |.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE-EDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCC-chhHHHHHHHHHHhcccccc
Confidence            666653  677888877653   5788999999999999999999999999987 4332 334455444444443   33


Q ss_pred             h----hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC----
Q 037178          216 V----GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC----AFVEEMVKLFEVMPE---RNLVSWNSIICGFSENG----  280 (311)
Q Consensus       216 ~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g----  280 (311)
                      .    ++...+...+.+.. +-|...|+-+...|...    ++..+|.+.+.+..+   .+......|+..|+...    
T Consensus       195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~  273 (320)
T PLN02789        195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA  273 (320)
T ss_pred             ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence            3    35666666666654 55788999888888773    445668888877654   34567788888888643    


Q ss_pred             --------------CcchHHHHHHhh
Q 037178          281 --------------FSCESFDLLIKM  292 (311)
Q Consensus       281 --------------~~~~a~~l~~~m  292 (311)
                                    ..++|.++++.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        274 EFRDTVDTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             hhhhhhhccccccccHHHHHHHHHHH
Confidence                          235688888777

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.25  E-value=0.00049  Score=62.28  Aligned_cols=57  Identities=9%  Similarity=0.058  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-------hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          236 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLV-------SWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..|..+.+.|-..|+++.|..+|++..+.+..       +|-.-...-.++.+++.|+++++..
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            56667778888888888888888888874433       3444444445667777788777666

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.22  E-value=1.4e-06  Score=46.85  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +||++|++|++.|++++|.++|++|.+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            455555555555555555555555554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.21  E-value=0.00026  Score=66.88  Aligned_cols=144  Identities=6%  Similarity=-0.117  Sum_probs=82.5

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHH
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNA  169 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~  169 (311)
                      ...+...+..+.....+.|..++|..+++... +.. +-+......+...+.+.+++++|+..+++..+  | +....+.
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-QRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            33446666666666666666666666666665 332 22333444566666666666666666666553  2 4445556


Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      +..++.+.|++++|..+|++...   ..|+ ..++..+-.++-+.|+.++|...|+...+.- .+...-|+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            66666666666666666666654   2233 4556666666666666666666666665542 33334444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.21  E-value=5.4e-05  Score=60.41  Aligned_cols=116  Identities=8%  Similarity=-0.070  Sum_probs=54.1

Q ss_pred             CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHH-HhCCC--hhhH
Q 037178          110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGF-TKNEL--YTDV  183 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~-~~~g~--~~~a  183 (311)
                      .++.+++...++... +.. +.|...|..|...|...|++++|...|++..+   .+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L-~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKI-RAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            333444444444443 222 33444555555555555555555555554331   2444444444432 34444  2555


Q ss_pred             HHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          184 LSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       184 ~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      .+++++..+   ..| +...+..+...+.+.|++++|...++.+.+..
T Consensus       130 ~~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            555555543   223 23344444455555555555555555555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=6.1e-05  Score=68.80  Aligned_cols=202  Identities=12%  Similarity=0.010  Sum_probs=159.2

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      ..|..+|.+|+..| +..+|..+..+-.+-+||+..|..+........-+++|.++.++.-.+        .--.+-...
T Consensus       425 emw~~vi~CY~~lg-~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~  495 (777)
T KOG1128|consen  425 EMWDPVILCYLLLG-QHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLI  495 (777)
T ss_pred             HHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhcccc
Confidence            35889999999999 999999998887777899999999998888888888888888876522        111122222


Q ss_pred             HhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhH
Q 037178          144 SLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a  219 (311)
                      ...++++++.+.|+.-.+  | -..+|-.+-.+..+.+++..|.+.|..-..   ..||. ..||.+-.+|.+.|+-.+|
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra  572 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRA  572 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHH
Confidence            347899999999986432  2 556788888888899999999999998865   67765 5799999999999999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHh
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIICGFSE  278 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~~~~~  278 (311)
                      ...+.+..+.+ .-+..+|-..+-.-.+.|.+++|.+.+.++.+     .|...-..++.+..+
T Consensus       573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence            99999999888 56778888999999999999999999998874     344444444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.18  E-value=5.5e-05  Score=66.28  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA  214 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g  214 (311)
                      .-.+|++.+...++++.|..+|+++.+.+....-.++..+...++-.+|.+++++... . .+-+......-.+.+.+.+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~-~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK-E-NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhcC
Confidence            3445666677779999999999999877666777788888888999999999988875 2 2224445555556688999


Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +.+.|.++.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999988774 4466799999999999999999999998776

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.18  E-value=3.3e-05  Score=62.26  Aligned_cols=154  Identities=12%  Similarity=0.001  Sum_probs=105.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      ..+-.++-..| +-+.+..+..+... .+.|....+..++...+.|++..|...+.+.. ... ++|..+|+.+--+|.+
T Consensus        70 ~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccC-CCChhhhhHHHHHHHH
Confidence            44555566666 66666666666555 55566666667777777788888877777776 333 6777778877777788


Q ss_pred             cCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178          146 CGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV  222 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~  222 (311)
                      .|++++|..-|.+..   ..+...+|.+.-.+.-.|+.+.|..++..... .+ .-|...-..+.-+....|++++|+.+
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-SP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-CC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            888888777777654   23556677777777777788888877777664 22 22555566677777777777777776


Q ss_pred             HHH
Q 037178          223 HGM  225 (311)
Q Consensus       223 ~~~  225 (311)
                      ...
T Consensus       225 ~~~  227 (257)
T COG5010         225 AVQ  227 (257)
T ss_pred             ccc
Confidence            544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=0.00036  Score=61.02  Aligned_cols=68  Identities=9%  Similarity=-0.038  Sum_probs=59.9

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ  128 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g  128 (311)
                      +|+..+|++.|+.=.+-. .++.|.+++++..-+.|++.+|.-..+.--+.|.+..+.++|+.+.+..|
T Consensus       171 ~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  171 EPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             CCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            689999999999999999 99999999999888779999999988888889999999999988874444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.00016  Score=62.71  Aligned_cols=197  Identities=10%  Similarity=0.051  Sum_probs=95.4

Q ss_pred             hcCCCHHHHHHHHHhhccCCCChhhHHHHH---HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178           75 EESKSLNKALSLLQENLHNADLKEATGVLL---QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      ..| ++++|.+.|++...  -|...-.++.   -.+-..|++++|.+.|-.+. .. +.-+..+.--+.+.|-...+...
T Consensus       502 ~ng-d~dka~~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh-~i-l~nn~evl~qianiye~led~aq  576 (840)
T KOG2003|consen  502 ANG-DLDKAAEFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLH-AI-LLNNAEVLVQIANIYELLEDPAQ  576 (840)
T ss_pred             ecC-cHHHHHHHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-HH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence            345 66666666666655  2222222221   12334566666666555443 11 12233333335555555555566


Q ss_pred             HHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          152 SRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       152 A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      |.+++-+..   ..|.....-|...|-+.|+-..|++.+-+--+  -+.-|..|...|...|....=++++..+|++.. 
T Consensus       577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa-  653 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-  653 (840)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence            666555433   23555555555556666665555555443321  122244455555555555555555555555432 


Q ss_pred             hCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 037178          229 MGLIGDVFVSNALIAMY-GKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENG  280 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g  280 (311)
                       -+.|+..-|..+|..| .+.|++.+|++++++...   .|+....-|++.+...|
T Consensus       654 -liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  654 -LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             -hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence             2455555555555433 334566666666655553   24444444444444333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.14  E-value=5.7e-05  Score=57.04  Aligned_cols=88  Identities=14%  Similarity=-0.046  Sum_probs=44.1

Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA  214 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g  214 (311)
                      +...+...|++++|...|+....   .+...|..+..++.+.|++++|...|++...   ..| +...+..+..++...|
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHcC
Confidence            44445555555555555554331   2444555555555555555555555555543   223 3344444555555555


Q ss_pred             ChhhHHHHHHHHHHh
Q 037178          215 DVGFGSGVHGMAAKM  229 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~  229 (311)
                      +.++|...++...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.11  E-value=0.00012  Score=58.47  Aligned_cols=144  Identities=9%  Similarity=0.014  Sum_probs=103.0

Q ss_pred             HHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCC
Q 037178          103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNEL  179 (311)
Q Consensus       103 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~  179 (311)
                      .+..|...|+++.+..-.+.+.     .|. .       .|...++.+++...+++..   ..|...|..+...|...|+
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-----DPL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-----Ccc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence            3445677788777644432222     111 1       2234566677776676644   2477889999999999999


Q ss_pred             hhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH-hccCC--hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178          180 YTDVLSIFVELSSDTELKPD-NFTFPCVIKAC-GGIAD--VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       180 ~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      +++|...|++..+   ..|+ ...+..+..++ ...|+  .++|.+++++..+.+ +-+..++..+...+.+.|++++|.
T Consensus        89 ~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370         89 YDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHH
Confidence            9999999998866   4564 45666666664 56676  489999999988876 457788888888899999999999


Q ss_pred             HHHhhCCC
Q 037178          256 KLFEVMPE  263 (311)
Q Consensus       256 ~~~~~m~~  263 (311)
                      ..|+++.+
T Consensus       165 ~~~~~aL~  172 (198)
T PRK10370        165 ELWQKVLD  172 (198)
T ss_pred             HHHHHHHh
Confidence            99998875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.09  E-value=6.9e-05  Score=56.60  Aligned_cols=111  Identities=7%  Similarity=-0.126  Sum_probs=69.5

Q ss_pred             HHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---
Q 037178           85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---  161 (311)
Q Consensus        85 ~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---  161 (311)
                      .+|++..+..|+.  +......+...|++++|...|+... ... +.+...|..+..++.+.|++++|...|++..+   
T Consensus        14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLV-MAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3444444433332  3345555666777777777777766 443 34566666677777777777777777776543   


Q ss_pred             CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch
Q 037178          162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT  202 (311)
Q Consensus       162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t  202 (311)
                      .+...|..+..++.+.|++++|...|++...   ..|+...
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~---~~p~~~~  127 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK---MSYADAS  127 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChH
Confidence            2556677777777777777777777777655   4455433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.09  E-value=0.00042  Score=65.47  Aligned_cols=178  Identities=12%  Similarity=0.056  Sum_probs=130.5

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .++..+-.|..+..+.| ..++|..+++...+..|| ......+...+.+.+++++|....++.. ... +-+....+.+
T Consensus        84 ~~~~~~~~La~i~~~~g-~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~~-p~~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAH-RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SGG-SSSAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hcC-CCCHHHHHHH
Confidence            45667888888888999 999999999999994444 5677888888999999999999999988 544 4456667778


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV  216 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  216 (311)
                      -.++.+.|+.++|..+|++...+   +..++..+..++-+.|+.++|...|++..+  ...|....|+..+.      ++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~~------~~  232 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRRLV------DL  232 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHHHH------HH
Confidence            88888999999999999998743   367888899999999999999999999865  23455566665544      33


Q ss_pred             hhHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhcC
Q 037178          217 GFGSGVHGMAAKMG----LIGDVFVSNALIAMYGKCA  249 (311)
Q Consensus       217 ~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g  249 (311)
                      ..-..+++++.-.+    ......+...+|.-|.+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (694)
T PRK15179        233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR  269 (694)
T ss_pred             HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence            33344555554333    2333455555666665544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.05  E-value=0.00011  Score=64.51  Aligned_cols=121  Identities=11%  Similarity=0.055  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                      .-.+|+..+...++++.|..+|+++.+ ..  |+  ....+++.+...++-.+|.+++.+..+.. +-+......-.+.|
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRE-RD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHh-cC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345667777788999999999999987 33  55  44557888888888899999999988664 55788888888889


Q ss_pred             HhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          246 GKCAFVEEMVKLFEVMPE--RN-LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+.++.+.|.++.+++.+  |+ ..+|..|..+|.+.|+++.|+-.++.+
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999986  54 469999999999999999999999877

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.0012  Score=56.84  Aligned_cols=145  Identities=7%  Similarity=-0.055  Sum_probs=89.4

Q ss_pred             HhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH-HHHh-ccCChhh
Q 037178          144 SLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI-KACG-GIADVGF  218 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li-~~~~-~~g~~~~  218 (311)
                      ...|+.++|.-.|+...  .| +...|..|+++|...|++.+|..+-.+...  -+.-+..+.+.+- ..|. ...--++
T Consensus       345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEK  422 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREK  422 (564)
T ss_pred             HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHH
Confidence            34455555555554422  22 555666677777766766666655544322  1112333332221 1221 1122355


Q ss_pred             HHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          219 GSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |.++++.-.+.  .|+ ....+.+...+...|+.+++..+++.-..  +|.+..+.|-..+.-.+..++|++.|...
T Consensus       423 AKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  423 AKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             HHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            66666554433  343 56677788888889999999999988763  89999999999999999999988888766

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.04  E-value=9.4e-05  Score=51.88  Aligned_cols=81  Identities=14%  Similarity=0.016  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCCcchHHHHHHHHhccC--------ChhhHHHHHHHHHHhCCCCcHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPDNFTFPCVIKACGGIA--------DVGFGSGVHGMAAKMGLIGDVF  236 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~  236 (311)
                      +-...|..+...|++.....+|+.+++ .|+ .|+..+|+.++.+.++..        ++-+...+++.|...+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence            334566677777999999999999999 999 899999999999887653        2345678999999999999999


Q ss_pred             HHHHHHHHHHh
Q 037178          237 VSNALIAMYGK  247 (311)
Q Consensus       237 ~~~~li~~~~~  247 (311)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.03  E-value=6.9e-05  Score=66.07  Aligned_cols=118  Identities=11%  Similarity=-0.006  Sum_probs=77.0

Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-CC-----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RN-----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      +.+......+++.+....+++++..++-+... ++     ..|..++|..|.+.|..+++++++..=.. .|+-||.+||
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~  141 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSF  141 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhH
Confidence            34444555566666666666666666665542 11     12334777777777777777777777666 7777777777


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC  248 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  248 (311)
                      +.+|+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777777776666555666666655555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.03  E-value=0.00014  Score=54.05  Aligned_cols=91  Identities=4%  Similarity=-0.110  Sum_probs=43.9

Q ss_pred             HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 037178          100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTK  176 (311)
Q Consensus       100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~  176 (311)
                      ...+...+...|+.++|.+.++.+. ..+ +.+...+..+...|.+.|++++|...|++..   ..+...|..+...+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLA-AYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            3344444445555555555555554 322 2344444445555555555555555554432   1233444444555555


Q ss_pred             CCChhhHHHHHHHhhh
Q 037178          177 NELYTDVLSIFVELSS  192 (311)
Q Consensus       177 ~g~~~~a~~~~~~m~~  192 (311)
                      .|++++|...|++..+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.02  E-value=0.0002  Score=65.70  Aligned_cols=166  Identities=11%  Similarity=0.068  Sum_probs=100.2

Q ss_pred             HHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH
Q 037178           73 LCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS  152 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A  152 (311)
                      ...+. .|.+|+.+++.+...+....-|..+..-|+..|+++.|.++|-+.-          .++--|.+|.+.|+|++|
T Consensus       742 ai~ak-ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  742 AIGAK-EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             Hhhhh-hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence            33445 6777777777666533444557778888888888888888876542          234467788888888888


Q ss_pred             HHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          153 RRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       153 ~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      .++-++...|  .+..|-+-..-+-+.|++.+|.++|-.+..     |+.     .|..|-+.|..++..++.++---. 
T Consensus       811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d-  879 (1636)
T KOG3616|consen  811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD-  879 (1636)
T ss_pred             HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence            8888776655  455666666666777777777777654433     432     345555666665555554332111 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                        .-..|..-+..-|-..|++.+|+.-|-+..
T Consensus       880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             --hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence              112233344444455555555555554443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00082  Score=55.50  Aligned_cols=224  Identities=12%  Similarity=-0.016  Sum_probs=130.0

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHH-HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVL-LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +......|-.+|-+.. ++..|-..++++....|...-|... ...+.+.+.+..|.++...|. ..   ++...-..-+
T Consensus        43 ~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~-D~---~~L~~~~lqL  117 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL-DN---PALHSRVLQL  117 (459)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc-CC---HHHHHHHHHH
Confidence            3334444444444555 5555555555554433333333221 223334444555555555444 11   1111111111


Q ss_pred             HH--HHhcCChhHHHHHHHhcC-CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178          141 TM--YSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       141 ~~--~~~~g~~~~A~~l~~~m~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  217 (311)
                      .+  ....|++..+..+.++.. +.+..+-+.......+.|++++|.+-|+...+..|..| ...|+..+.. .+.|+.+
T Consensus       118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qya  195 (459)
T KOG4340|consen  118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYA  195 (459)
T ss_pred             HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHH
Confidence            11  123355566666666665 34444555555556789999999999999888567665 4567766654 4568999


Q ss_pred             hHHHHHHHHHHhCCC-------------Cc--------HHHHHHHHHH-------HHhcCCHHHHHHHHhhCCC-----C
Q 037178          218 FGSGVHGMAAKMGLI-------------GD--------VFVSNALIAM-------YGKCAFVEEMVKLFEVMPE-----R  264 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~-------------~~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~~-----~  264 (311)
                      .|.+...++.++|+.             ||        ...-+.++.+       +-+.|+++.|.+.+.+|+-     -
T Consensus       196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el  275 (459)
T KOG4340|consen  196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL  275 (459)
T ss_pred             HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence            999999999888652             12        1122334443       4578999999999999972     1


Q ss_pred             C---------------------------------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          265 N---------------------------------LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       265 ~---------------------------------~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |                                 ..||-.++-.||++.-++-|-.++.+=
T Consensus       276 DPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  276 DPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             CchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            1                                 246667777888888888777776553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.01  E-value=0.00031  Score=64.53  Aligned_cols=103  Identities=16%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE  252 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  252 (311)
                      +-.....|.+|+.+++.++. .+  .-..-|..+.+.|...|+++.|+++|-+.         ..++--|++|.+.|+++
T Consensus       741 aai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence            33455666666666666654 21  22334566666666666666666666432         12345566666666666


Q ss_pred             HHHHHHhhCCCCC--hhhHHHHHHHHHhCCCcchHHH
Q 037178          253 EMVKLFEVMPERN--LVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       253 ~A~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~  287 (311)
                      +|.++-++...|.  .+.|-+-..-+-++|++.+|.+
T Consensus       809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeq  845 (1636)
T KOG3616|consen  809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQ  845 (1636)
T ss_pred             HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence            6666666555432  2233333333333444444333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.99  E-value=0.00034  Score=52.85  Aligned_cols=121  Identities=10%  Similarity=0.007  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc--HHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD--VFVSNA  240 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~  240 (311)
                      |..++..+ ..++...+...++.+.. .  .|+.    ...-.+...+...|++++|...|+........++  ....-.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~-~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAK-D--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHH-H--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            44444444 25566666666666654 1  1222    2222344555666666666666666666542221  123334


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178          241 LIAMYGKCAFVEEMVKLFEVMPER--NLVSWNSIICGFSENGFSCESFDLLIK  291 (311)
Q Consensus       241 li~~~~~~g~~~~A~~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~l~~~  291 (311)
                      |...+...|++++|+..++....+  ....+...-..|.+.|+.++|...|+.
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455566666666666666554432  223445555666666666666666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0013  Score=53.42  Aligned_cols=116  Identities=11%  Similarity=-0.020  Sum_probs=52.4

Q ss_pred             HHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh----ccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG----GIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~----~~g~~  216 (311)
                      ..|+..|++++|++.......-+....|  +..+.+..+++-|.+.+++|.+ -   -+..|.+-|..++.    ..+.+
T Consensus       116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~-i---ded~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ-I---DEDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc-c---chHHHHHHHHHHHHHHhccchhh
Confidence            3445555555555555542222222222  2223344455555555555544 1   12334443333332    22345


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .+|.-+|++|-++ .+|+..+.|-...++...|++++|..++++..+
T Consensus       190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            5555555555432 345555555555555555555555555555543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.95  E-value=0.00065  Score=51.33  Aligned_cols=122  Identities=12%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh--hHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF--IINTR  138 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~  138 (311)
                      .|..++..+ ..+ +...+...++.+.. .+.+   ....-.+...+...|++++|...|+... .....++.  ...-.
T Consensus        14 ~y~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   14 LYEQALQAL-QAG-DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHH-HCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHHHHHHHHHH
Confidence            455666666 366 77777777777777 3333   2223334566677788888888888877 54422221  23334


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVE  189 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~  189 (311)
                      |...+...|++++|+..++....+  ....+......|.+.|++++|...|+.
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            667777778888888888765533  334566677777778888888777765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00061  Score=55.28  Aligned_cols=168  Identities=11%  Similarity=-0.015  Sum_probs=117.5

Q ss_pred             HHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 037178           85 SLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR  162 (311)
Q Consensus        85 ~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~  162 (311)
                      ++.+.+..  ...+......-...|+..|++++|.+......     ..+....  =+..+.|..+++-|.+.+++|.+-
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444444  33333334444556889999999988876522     3333333  356678889999999999999975


Q ss_pred             -ChHHHHHHHHHHH----hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHH
Q 037178          163 -NLFQWNALVSGFT----KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFV  237 (311)
Q Consensus       163 -~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  237 (311)
                       +-.+.+-|..+|.    ..++..+|+-+|++|.+  ...|+..+.+-...++...|++++|..++++...+.. .+..+
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpet  243 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPET  243 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHH
Confidence             4456665555554    45789999999999963  4789999999999999999999999999999988863 35555


Q ss_pred             HHHHHHHHHhcCCH-HHHHHHHhhCC
Q 037178          238 SNALIAMYGKCAFV-EEMVKLFEVMP  262 (311)
Q Consensus       238 ~~~li~~~~~~g~~-~~A~~~~~~m~  262 (311)
                      ...+|-.-.-.|+- +-..+...+.+
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            55555555555554 33445555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.88  E-value=0.001  Score=65.87  Aligned_cols=227  Identities=8%  Similarity=-0.110  Sum_probs=149.2

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCC--hhhHHHHHHhcccCCChhHHHHHHHHHHh---hcCCC--c-
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-----NADL--KEATGVLLQACGHEKDIEIGKRVHELVSA---STQFS--N-  131 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~--~-  131 (311)
                      .++.+-..+...| ++++|...+++...     ..+.  ..++..+...+...|+++.|...+++...   ..+..  + 
T Consensus       493 a~~~lg~~~~~~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        493 ATSVLGEVHHCKG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            3455666677889 99999999998876     1111  22344556667789999999999887662   12211  1 


Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCC------C--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT------R--NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      ....+..+...+...|++++|...+++...      +  ....+..+...+...|++++|.+.+++...-.........+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            233455566677778999999988887532      1  23345556778888999999999988874310111111111


Q ss_pred             -----HHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----h
Q 037178          204 -----PCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RN----L  266 (311)
Q Consensus       204 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~  266 (311)
                           ...+..+...|+.+.|.+++...........   ...+..+..++...|+.++|...+++..+     ..    .
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence                 1122444567889999888766543221111   11245677788899999999999988764     11    2


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+...+..++.+.|+.++|...+.+.
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35666777888999999999999888

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.87  E-value=0.00078  Score=59.12  Aligned_cols=149  Identities=12%  Similarity=0.011  Sum_probs=93.4

Q ss_pred             HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHHHHhcCChh
Q 037178           73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITMYSLCGFPL  150 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~~~~~g~~~  150 (311)
                      +.+.| .+++|+..++.+.. .+.|+..+......+.+.++.++|.+.++.+. ..  .|+ ....-.+-.+|.+.|+..
T Consensus       316 ~~~~~-~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAG-QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-AL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhc-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hc--CCCccHHHHHHHHHHHhcCChH
Confidence            33556 67777777777666 44455555566666777777777777777776 33  233 344444667777777777


Q ss_pred             HHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178          151 DSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAA  227 (311)
Q Consensus       151 ~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  227 (311)
                      +|...++....   .|...|..|..+|...|+..++..-..++.                   ...|++++|...+....
T Consensus       392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~-------------------~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY-------------------ALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH-------------------HhCCCHHHHHHHHHHHH
Confidence            77777776552   266677777777777777777766655543                   35567777777766665


Q ss_pred             HhC--CCCcHHHHHHHHHH
Q 037178          228 KMG--LIGDVFVSNALIAM  244 (311)
Q Consensus       228 ~~g--~~~~~~~~~~li~~  244 (311)
                      +..  -.|+..-+...|+.
T Consensus       453 ~~~~~~~~~~aR~dari~~  471 (484)
T COG4783         453 QQVKLGFPDWARADARIDQ  471 (484)
T ss_pred             HhccCCcHHHHHHHHHHHH
Confidence            543  23344444555543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.85  E-value=0.00015  Score=57.20  Aligned_cols=115  Identities=10%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             ChhhHHHHHHhcc-----cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHH
Q 037178           96 LKEATGVLLQACG-----HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNAL  170 (311)
Q Consensus        96 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~l  170 (311)
                      |..+|..++..+.     +.|.++-....+..|. +.|+..|..+|+.|++.+=+ |.+- -..+|..+-          
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------  112 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------  112 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence            4444444444443     5688999999999999 99999999999999998876 4332 112222211          


Q ss_pred             HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHHH
Q 037178          171 VSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV-GFGSGVHGMAA  227 (311)
Q Consensus       171 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~  227 (311)
                       -  -.-.+-+-|++++++|.. .|+.||..|+..+++.+++.+.. .+..++.-.|-
T Consensus       113 -~--hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  113 -M--HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             -c--cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence             0  112356788999999999 99999999999999999887753 33444444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.0032  Score=54.36  Aligned_cols=192  Identities=8%  Similarity=-0.016  Sum_probs=140.9

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|-.-....-... +++.|+.+-++..+ ...+...|..=.+.+...+++++|.-.|+..+ ..- +.+...|.-|+++
T Consensus       301 ~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-~La-p~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-MLA-PYRLEIYRGLFHS  377 (564)
T ss_pred             hhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH-hcc-hhhHHHHHHHHHH
Confidence            33444444444556 78888888888777 44455666666667778899999999999987 433 4688999999999


Q ss_pred             HHhcCChhHHHHHHHh----cCCCChHHHHHHH-HHHH-hCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCC
Q 037178          143 YSLCGFPLDSRRVFDS----LKTRNLFQWNALV-SGFT-KNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIAD  215 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~----m~~~~~~~y~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~  215 (311)
                      |...|.+.+|.-+-+.    |. .+..+.+.+- ..+. ....-++|..+++.-..   +.|+- ...+.+..-|...|.
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCc
Confidence            9999999998766543    33 2333333331 2222 22234788888887654   66763 456777788899999


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER  264 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  264 (311)
                      .+++..+++.-...  .||....+.|.+.+...+.+.+|++.|......
T Consensus       454 ~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  454 TKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             cchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99999999987765  789999999999999999999999999876643

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.81  E-value=0.00018  Score=56.74  Aligned_cols=89  Identities=8%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             CCChHHHHHHHHHHHh-----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc----------------cCChhhH
Q 037178          161 TRNLFQWNALVSGFTK-----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG----------------IADVGFG  219 (311)
Q Consensus       161 ~~~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~----------------~g~~~~a  219 (311)
                      .+|-.+|..+|+.|.+     .|.++=....+..|.+ .|+.-|..+|+.|++.+=+                -.+.+-|
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~  122 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA  122 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence            3455555555555543     2455555555666666 6666666666666666543                1245678


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      .+++++|...|+-||..++..+++.+++.+.
T Consensus       123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            9999999999999999999999999987664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.81  E-value=0.00029  Score=62.24  Aligned_cols=117  Identities=11%  Similarity=0.059  Sum_probs=97.6

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL  241 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  241 (311)
                      +.+....+++.+....+.+.+..++.+.+... ....-..|..++|+.|.+.|..+++..++..=...|+-||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            56677888888888889999999998887621 22233456679999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhC
Q 037178          242 IAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSEN  279 (311)
Q Consensus       242 i~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~  279 (311)
                      |+.+.+.|++..|.+++.+|..    .+..|+.-.+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999874    4556776666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.80  E-value=0.0016  Score=62.60  Aligned_cols=210  Identities=10%  Similarity=0.021  Sum_probs=143.0

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHH------------------H
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRV------------------H  120 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~------------------~  120 (311)
                      ..+...|..|+..+...+ ++++|.++.+...+..|+. ..|-.+...+.+.++...+..+                  .
T Consensus        28 p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         28 LSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             cchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence            445667999999999999 9999999999777744443 3333333355555555544444                  2


Q ss_pred             HHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC
Q 037178          121 ELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK  197 (311)
Q Consensus       121 ~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  197 (311)
                      ..|. ..  .-+...+-.|..+|-+.|+.++|..+++++.+   .|..+.|.+...|... +.++|.+++.+... .-  
T Consensus       107 ~~i~-~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-~~--  179 (906)
T PRK14720        107 DKIL-LY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-RF--  179 (906)
T ss_pred             HHHH-hh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-HH--
Confidence            2222 11  12224556688888888999999999999874   4788899999999999 99999999888765 21  


Q ss_pred             CCcchHHHHHHHH-----hccCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhh
Q 037178          198 PDNFTFPCVIKAC-----GGIADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVS  268 (311)
Q Consensus       198 p~~~t~~~li~~~-----~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~  268 (311)
                      -+..-|+.+....     +...+++.-.++.+.+... |..--..++-.+-..|-+.++++++..+++...+   .|..+
T Consensus       180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a  259 (906)
T PRK14720        180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA  259 (906)
T ss_pred             HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence            1222333333321     2233455555555555544 4445567777778889999999999999999885   56667


Q ss_pred             HHHHHHHHH
Q 037178          269 WNSIICGFS  277 (311)
Q Consensus       269 y~~li~~~~  277 (311)
                      ..-++.+|.
T Consensus       260 ~~~l~~~y~  268 (906)
T PRK14720        260 REELIRFYK  268 (906)
T ss_pred             HHHHHHHHH
Confidence            777888776

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.76  E-value=0.00036  Score=49.03  Aligned_cols=88  Identities=13%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             HHHHHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 037178          101 GVLLQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNEL  179 (311)
Q Consensus       101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~  179 (311)
                      ...|..|...+++...-.+|..++ +.|+ .|+..+|+.++.+.++..--.+                       .-.++
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~k   84 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIENK   84 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHHH
Confidence            445666667789999999999998 8888 8899999998888877533221                       11235


Q ss_pred             hhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178          180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI  213 (311)
Q Consensus       180 ~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~  213 (311)
                      +-..+.+|++|.. .+++|+..||+.++..+.+.
T Consensus        85 l~~LLtvYqDiL~-~~lKP~~etYnivl~~Llkg  117 (120)
T PF08579_consen   85 LTNLLTVYQDILS-NKLKPNDETYNIVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHh
Confidence            6678889999998 99999999999999987653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0075  Score=54.36  Aligned_cols=207  Identities=9%  Similarity=0.020  Sum_probs=133.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH--HHHHHH
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR--LITMYS  144 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~--ll~~~~  144 (311)
                      +=++.+...| ++++|.....++.. .+.|...+..=+-+....+.+++|..+.+.    .+   -..+++.  +=.+||
T Consensus        17 t~ln~~~~~~-e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~---~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   17 TDLNRHGKNG-EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK----NG---ALLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHhccch-HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cc---hhhhcchhhHHHHHH
Confidence            3356677888 99999999999999 655667788888888888999988854432    22   1112222  244554


Q ss_pred             --hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc-cCChhhHHH
Q 037178          145 --LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG-IADVGFGSG  221 (311)
Q Consensus       145 --~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~  221 (311)
                        +.+..++|...++...+-+..+...=...+.+.|++++|+++|+.+.+ .+.    ..+..-+.+-+. .+-.-.+  
T Consensus        89 ~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~----dd~d~~~r~nl~a~~a~l~~--  161 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNS----DDQDEERRANLLAVAAALQV--  161 (652)
T ss_pred             HHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC----chHHHHHHHHHHHHHHhhhH--
Confidence              679999999999966665665666667788899999999999999965 332    222222222111 1100011  


Q ss_pred             HHHHHHHhCCCCcHHHHHH---HHHHHHhcCCHHHHHHHHhhCC--------CCCh----------hhHHHHHHHHHhCC
Q 037178          222 VHGMAAKMGLIGDVFVSNA---LIAMYGKCAFVEEMVKLFEVMP--------ERNL----------VSWNSIICGFSENG  280 (311)
Q Consensus       222 ~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~--------~~~~----------~~y~~li~~~~~~g  280 (311)
                        +.+......| ..+|..   ....+...|++.+|+++++...        +-|.          .+---|...+-..|
T Consensus       162 --~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G  238 (652)
T KOG2376|consen  162 --QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG  238 (652)
T ss_pred             --HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence              1122223333 223333   3345678899999999998872        1111          12334566777899


Q ss_pred             CcchHHHHHHhh
Q 037178          281 FSCESFDLLIKM  292 (311)
Q Consensus       281 ~~~~a~~l~~~m  292 (311)
                      +-++|..++...
T Consensus       239 qt~ea~~iy~~~  250 (652)
T KOG2376|consen  239 QTAEASSIYVDI  250 (652)
T ss_pred             chHHHHHHHHHH
Confidence            999999999988

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.72  E-value=0.0031  Score=60.73  Aligned_cols=178  Identities=11%  Similarity=0.006  Sum_probs=122.0

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CC-------
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TR-------  162 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~-------  162 (311)
                      .+.+...+..++..+...+++++|.++.+...+...-.+....+...  .+...++.+++..+  .+.   ..       
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            44456778999999999999999999999776222222333333333  67777777776655  222   11       


Q ss_pred             ------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          163 ------------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       163 ------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                                  +..++-.+..+|-+.|+.++|..+|+++.+ .. .-|....|.+...+... ++++|.+++....+. 
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence                        113456677788888899999999988877 33 22466788888888888 888888888776655 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------------CChhhHHHHHHHHHhCCCcchHHH
Q 037178          231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----------------------RNLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------~~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                                    |...+++.++.++|.++.+                       +-+.++--+-..|-..++++++.+
T Consensus       179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence                          4444555556665555553                       223445556677788889999999


Q ss_pred             HHHhh
Q 037178          288 LLIKM  292 (311)
Q Consensus       288 l~~~m  292 (311)
                      +++..
T Consensus       245 iLK~i  249 (906)
T PRK14720        245 ILKKI  249 (906)
T ss_pred             HHHHH
Confidence            99988

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.71  E-value=0.00034  Score=52.01  Aligned_cols=97  Identities=15%  Similarity=0.038  Sum_probs=81.6

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +......+...+...| ++++|.+.|+.... .+.+...+..+...+...|+++.|..+++... +.+ +.+...+..+.
T Consensus        16 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la   92 (135)
T TIGR02552        16 QLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD-PDDPRPYFHAA   92 (135)
T ss_pred             hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCChHHHHHHH
Confidence            3444667778888999 99999999999988 66677888889999999999999999999987 554 55667777788


Q ss_pred             HHHHhcCChhHHHHHHHhcCC
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT  161 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~  161 (311)
                      .+|...|++++|.+.|+...+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999999988763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0016  Score=58.30  Aligned_cols=107  Identities=12%  Similarity=0.074  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      ..++|-++....+..+|..+++.|--.|--.|++++|...|+...  +| |...||-|-..++...+.++|+..|.+..+
T Consensus       413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            334444443233434555555555555555556666666555543  22 455566665555555555666666655544


Q ss_pred             cCCCCCCc-chHHHHHHHHhccCChhhHHHHHHH
Q 037178          193 DTELKPDN-FTFPCVIKACGGIADVGFGSGVHGM  225 (311)
Q Consensus       193 ~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~  225 (311)
                         ++|+- ...-.|--+|...|.+++|.+.|-.
T Consensus       493 ---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  493 ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             ---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence               44542 2222333345555555555554433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.70  E-value=0.00048  Score=46.70  Aligned_cols=88  Identities=17%  Similarity=0.086  Sum_probs=39.6

Q ss_pred             HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178          169 ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK  247 (311)
Q Consensus       169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  247 (311)
                      .+...+...|++++|...+++..+   ..|+ ...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            344444445555555555555433   1121 1334444444444455555555555444432 2222344444444455


Q ss_pred             cCCHHHHHHHHhh
Q 037178          248 CAFVEEMVKLFEV  260 (311)
Q Consensus       248 ~g~~~~A~~~~~~  260 (311)
                      .|+.++|...+++
T Consensus        81 ~~~~~~a~~~~~~   93 (100)
T cd00189          81 LGKYEEALEAYEK   93 (100)
T ss_pred             HHhHHHHHHHHHH
Confidence            5555555444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.70  E-value=0.0012  Score=51.50  Aligned_cols=114  Identities=9%  Similarity=0.016  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .|..+...+...|++++|...|++... ....+.  ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            344444444444444444444444433 111111  1234444444444455555555444444432 122333344444


Q ss_pred             HHHhcCC--------------HHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 037178          244 MYGKCAF--------------VEEMVKLFEVMPERNLVSWNSIICGFSENGF  281 (311)
Q Consensus       244 ~~~~~g~--------------~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~  281 (311)
                      .|...|+              +++|.+++++..+.+...|..++..+...|+
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence            4444433              4555666665555454445555555544443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.70  E-value=0.00054  Score=57.87  Aligned_cols=125  Identities=12%  Similarity=0.034  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCCC---hHHHHHHHHH-HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTRN---LFQWNALVSG-FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      +|..+|+..-+.+..+.|..+|.+..+..   ...|-..... |...++.+.|..+|+...+ . +.-+...+..-++-+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk-~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK-K-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-H-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHH
Confidence            44445555555555555555555544321   1122221111 1112344445555555443 1 222333444444444


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .+.|+.+.|+.+|++.... +..+   ...|...++.-.+.|+++.+.++.+++.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555555544433 1111   1345555554445555555555444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.68  E-value=0.0066  Score=60.20  Aligned_cols=220  Identities=10%  Similarity=-0.034  Sum_probs=145.5

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCC-Ch----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----CC-CchhhHHHHH
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NAD-LK----EATGVLLQACGHEKDIEIGKRVHELVSAST----QF-SNDFIINTRL  139 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~-~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~-~~~~~~~~~l  139 (311)
                      ..+...| ++++|...+++... ... +.    ...+.+...+...|++++|...+++.. ..    |- .....++..+
T Consensus       460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al-~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE-QMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhhhcchHHHHHHHHHH
Confidence            3455778 99999999998766 222 21    234555556678999999999988876 32    21 1123355566


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC-------C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCC--cchHHH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT-------R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPD--NFTFPC  205 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~-------~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~t~~~  205 (311)
                      ...+...|++++|...+++..+       +    ....+..+...+...|++++|...+++.... ....+.  ...+..
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            7778889999999998876432       1    1233555666777889999999998886431 111122  234445


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hhHHHH
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVS-----NALIAMYGKCAFVEEMVKLFEVMPERNL-------VSWNSI  272 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~y~~l  272 (311)
                      +.......|+.++|.+.+.......-.. ....+     ...+..+...|+.+.|.+.+.....+..       ..+..+
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  697 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI  697 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence            6667788999999999988875431111 11111     1123455668999999999887765321       113466


Q ss_pred             HHHHHhCCCcchHHHHHHhh
Q 037178          273 ICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       273 i~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..++...|+.++|..++++.
T Consensus       698 a~~~~~~g~~~~A~~~l~~a  717 (903)
T PRK04841        698 ARAQILLGQFDEAEIILEEL  717 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            77888999999999999887

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.66  E-value=0.017  Score=52.71  Aligned_cols=113  Identities=14%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             CChhhHHHHHHHhhhcCCCCCCc------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhc
Q 037178          178 ELYTDVLSIFVELSSDTELKPDN------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKC  248 (311)
Q Consensus       178 g~~~~a~~~~~~m~~~~~~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~  248 (311)
                      |+..+...+|.+...  .+.|..      ..|..+.+-|-..|+++.|+.+|+...+-..+--   ..+|..-.++-.+.
T Consensus       361 ~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             CChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            455566666666543  344432      2466777778899999999999998877665433   46777777778888


Q ss_pred             CCHHHHHHHHhhCCC---------------------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          249 AFVEEMVKLFEVMPE---------------------RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       249 g~~~~A~~~~~~m~~---------------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+++.|+++.+...-                     ++...|...++---..|-++....+++++
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri  503 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI  503 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999887652                     23456777777767778888888888888

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0079  Score=57.59  Aligned_cols=187  Identities=13%  Similarity=0.063  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178           80 LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS  158 (311)
Q Consensus        80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~  158 (311)
                      ..++.+..+++.. ..|+.      ...+...+-+++|..+|+...      .+....+.||.   ..+.++.|.+.-++
T Consensus      1036 ~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1036 RTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAER 1100 (1666)
T ss_pred             hHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHh
Confidence            3445555555544 33332      222333444555555555432      22233333332   22445555555555


Q ss_pred             cCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178          159 LKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS  238 (311)
Q Consensus       159 m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  238 (311)
                      ..+|.  .|..+..+-.+.|...+|++-|-+..       |...|.-+|+.+.+.|.+++..+++...++..-.|..  =
T Consensus      1101 ~n~p~--vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1101 CNEPA--VWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred             hCChH--HHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence            44443  35555555555555555555443321       3334555555555555555555555554444433322  2


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-----------------C------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMP-----------------E------RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~-----------------~------~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +.||-+|++.+++.+.++....-.                 +      .++.-|..|...+...|+++.|...-++.
T Consensus      1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            345555555555554444332110                 0      24455666777777777777776655544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.61  E-value=0.001  Score=56.26  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=100.5

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHh-cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQA-CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      .+|-.+|+..-+.+ ..+.|..+|.+.+. ...+...|...... +...++.+.|..+|+... +. +..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~-g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-k~-f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTE-GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-KK-FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-HH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHH
Confidence            35788888888888 89999999999887 33334444443333 333567777999999988 43 3567777888899


Q ss_pred             HHHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          142 MYSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      .+.+.|+.+.|..+|++....      -...|...+.-=.+.|+.+.+..+.+++.+   ..|+......+++-|
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~---~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE---LFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH---HTTTS-HHHHHHCCT
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhhhhHHHHHHHHh
Confidence            999999999999999987642      335788888888888999999999988876   455655555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.60  E-value=0.0014  Score=47.22  Aligned_cols=88  Identities=11%  Similarity=0.041  Sum_probs=41.0

Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC--CC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT--RN----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIK  208 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~--~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~  208 (311)
                      +...+.+.|++++|.+.|+.+.+  |+    ...+..+..++.+.|++++|...|++... .  .|+    ...+..+..
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-K--YPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-H--CCCCCcccHHHHHHHH
Confidence            44444445555555555544432  11    12344455555555555555555555443 1  121    223444444


Q ss_pred             HHhccCChhhHHHHHHHHHHh
Q 037178          209 ACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      ++.+.|+.++|...++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            455555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.60  E-value=0.00058  Score=46.29  Aligned_cols=89  Identities=15%  Similarity=0.032  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      ..+...+...| ++++|...+++..+ .+.+...+..+...+...++++.|.+.++... +.. +.+..++..+...+..
T Consensus         4 ~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC-CcchhHHHHHHHHHHH
Confidence            34444455555 55555555555554 22233344444444445555555555555544 322 2222344444444444


Q ss_pred             cCChhHHHHHHHh
Q 037178          146 CGFPLDSRRVFDS  158 (311)
Q Consensus       146 ~g~~~~A~~l~~~  158 (311)
                      .|+.++|...++.
T Consensus        81 ~~~~~~a~~~~~~   93 (100)
T cd00189          81 LGKYEEALEAYEK   93 (100)
T ss_pred             HHhHHHHHHHHHH
Confidence            4554444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.02  Score=49.13  Aligned_cols=83  Identities=8%  Similarity=0.014  Sum_probs=34.6

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGF  281 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~  281 (311)
                      +.+..|.-+...|+...|.++-.+.   + .|+..-|-.-+.+|++.|++++-.++...  ++.++-|.-.+.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence            3333344444444444444432222   1 23444444444444444444444443332  2333444444444444444


Q ss_pred             cchHHHHHH
Q 037178          282 SCESFDLLI  290 (311)
Q Consensus       282 ~~~a~~l~~  290 (311)
                      ..+|..++.
T Consensus       253 ~~eA~~yI~  261 (319)
T PF04840_consen  253 KKEASKYIP  261 (319)
T ss_pred             HHHHHHHHH
Confidence            444444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN02789 farnesyltranstransferase

Probab=97.58  E-value=0.018  Score=49.52  Aligned_cols=192  Identities=8%  Similarity=-0.024  Sum_probs=136.1

Q ss_pred             CHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC-ChhHHHHHHH
Q 037178           79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG-FPLDSRRVFD  157 (311)
Q Consensus        79 ~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~  157 (311)
                      ++.+|...|+....                ..+..++|..+.+++. +.. +-+..+|+..-.++.+.| ++++++..++
T Consensus        35 ~~~~a~~~~ra~l~----------------~~e~serAL~lt~~aI-~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~   96 (320)
T PLN02789         35 EFREAMDYFRAVYA----------------SDERSPRALDLTADVI-RLN-PGNYTVWHFRRLCLEALDADLEEELDFAE   96 (320)
T ss_pred             HHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            67777777766544                5677889999999988 543 334456666666677777 6799999998


Q ss_pred             hcCC---CChHHHHHHHHHHHhCCCh--hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178          158 SLKT---RNLFQWNALVSGFTKNELY--TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       158 ~m~~---~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  231 (311)
                      ++.+   .+..+|+.--..+.+.|+.  ++++.+++++.+   ..| |..+|+...-++...|+++++.+.++++.+.+ 
T Consensus        97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-  172 (320)
T PLN02789         97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-  172 (320)
T ss_pred             HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-
Confidence            8763   3556787666566666653  678888888876   445 45688888888889999999999999999987 


Q ss_pred             CCcHHHHHHHHHHHHhc---CCH----HHHHHHHhhCCC---CChhhHHHHHHHHHhCC----CcchHHHHHHhh
Q 037178          232 IGDVFVSNALIAMYGKC---AFV----EEMVKLFEVMPE---RNLVSWNSIICGFSENG----FSCESFDLLIKM  292 (311)
Q Consensus       232 ~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~m~~---~~~~~y~~li~~~~~~g----~~~~a~~l~~~m  292 (311)
                      +-+..+|+-....+.+.   |+.    +++.....++.+   .|..+|+-+...+...+    +..+|.+.+.+.
T Consensus       173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~  247 (320)
T PLN02789        173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV  247 (320)
T ss_pred             CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence            44667777776666554   223    456666655553   46788888888877733    345677777776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.50  E-value=0.0034  Score=48.68  Aligned_cols=79  Identities=9%  Similarity=-0.064  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .|..+...+...|++++|...|++... ....+.  ..++..+-..+...|++++|.+.+....+.. +.....+..+..
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~  114 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence            344445555555555555555555543 211111  1244455555555555555555555554432 222333444444


Q ss_pred             HHH
Q 037178          244 MYG  246 (311)
Q Consensus       244 ~~~  246 (311)
                      .|.
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.029  Score=45.52  Aligned_cols=180  Identities=8%  Similarity=-0.034  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHhhcc------CCCChh-hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178           79 SLNKALSLLQENLH------NADLKE-ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        79 ~~~~a~~~~~~m~~------~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      +.++.++++.++..      ..++.. .|.-++-+....|+.+.|...++++..+.  +-+..+--.-.-.+-..|++++
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence            55666666666654      223332 24445555556666666666666665222  2222221111111233466666


Q ss_pred             HHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          152 SRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       152 A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      |.+.++.+.+.   |.++|--=+...-..|+--+|++-+.+..+  .+.-|...|.-+-..|...|++++|.-.++++.-
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            66666666532   444554444444445555566655555542  2445666666666666666666666666666654


Q ss_pred             hCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHhhCCC
Q 037178          229 MGLIGDVFVSNALIAMYGKC---AFVEEMVKLFEVMPE  263 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~  263 (311)
                      .. +.+...+..+.+.+--.   .+++-|.+.|.+..+
T Consensus       183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            43 22333333344333222   244555666655554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.49  E-value=0.00015  Score=49.10  Aligned_cols=20  Identities=0%  Similarity=-0.247  Sum_probs=9.3

Q ss_pred             HHHHHhccCChhhHHHHHHH
Q 037178          206 VIKACGGIADVGFGSGVHGM  225 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~  225 (311)
                      +..++.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            44444444444444444444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.49  E-value=0.00044  Score=46.81  Aligned_cols=78  Identities=13%  Similarity=-0.037  Sum_probs=61.1

Q ss_pred             cCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHH
Q 037178          213 IADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l  288 (311)
                      .|+++.|..+++.+.+..-. ++...+-.+..+|.+.|++++|..++++ .+   .+....-.+..+|.+.|++++|.++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57899999999999887532 2555666689999999999999999988 43   3444555668899999999999999


Q ss_pred             HHh
Q 037178          289 LIK  291 (311)
Q Consensus       289 ~~~  291 (311)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            976

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.024  Score=45.99  Aligned_cols=172  Identities=10%  Similarity=0.056  Sum_probs=124.0

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..++.+....| +.+.|...++++.. .+.+...-..-.--+-..|..++|.++++.+. +.+ +-|.++|--=+...
T Consensus        54 l~EqV~IAAld~~-~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAil  130 (289)
T KOG3060|consen   54 LYEQVFIAALDTG-RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHH
Confidence            4777888888999 99999999999888 52222221111112335789999999999999 555 66778887777777


Q ss_pred             HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhc---cCCh
Q 037178          144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGG---IADV  216 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~---~g~~  216 (311)
                      -..|+--+|.+-+....+   .|...|--+...|...|++++|.-.++++.-   +.|... -+..+.+.+.-   ..++
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll---~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL---IQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            777888888888777664   4899999999999999999999999999976   556544 44455555433   3367


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      +.+.+.+.+..+..-......|.+.+
T Consensus       208 ~~arkyy~~alkl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHHHHHHhChHhHHHHHHHHH
Confidence            77888998887765323333333333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.48  E-value=0.041  Score=52.12  Aligned_cols=71  Identities=10%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChh
Q 037178          109 HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       109 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~  181 (311)
                      +.|+.++|..+++... ..+. -|..|...+-.+|-..|+.++|..+|++..+  |+......+..+|++.+.+.
T Consensus        55 r~gk~~ea~~~Le~~~-~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk  127 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALY-GLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYK  127 (932)
T ss_pred             HhcCchhHHHHHhhhc-cCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433 2221 1444444444445555555555555544432  33333333444444444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.012  Score=56.41  Aligned_cols=209  Identities=11%  Similarity=0.075  Sum_probs=131.6

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      ..|..+..+-.+.| .+.+|++-|-+..    |+..|..++..+.+.|.+++-...+...+ +..-+|.+.  +.||-+|
T Consensus      1105 ~vWsqlakAQL~~~-~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGG-LVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcC-chHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHH
Confidence            35888888888888 8888888775543    67889999999999999999999888877 666566555  4689999


Q ss_pred             HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-------------------CCCCCCcchHH
Q 037178          144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-------------------TELKPDNFTFP  204 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~p~~~t~~  204 (311)
                      ++.+++.+-++++.   .||+.....+-+-|...|.++.|.-+|.....-                   ..-.-+..||.
T Consensus      1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            99999888776643   344444444555555555555554444333220                   00012334555


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGF  281 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~  281 (311)
                      -+-.+|...+.+..|.     |...++.....-..-+++-|-..|-+++-..+++...-   -..-.|+-|.--|++-. 
T Consensus      1254 ~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk- 1327 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK- 1327 (1666)
T ss_pred             HHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-
Confidence            5555555544443332     22233344455566777777778888877777776542   23345666666666543 


Q ss_pred             cchHHHHH
Q 037178          282 SCESFDLL  289 (311)
Q Consensus       282 ~~~a~~l~  289 (311)
                      .++.++.+
T Consensus      1328 p~km~EHl 1335 (1666)
T KOG0985|consen 1328 PEKMMEHL 1335 (1666)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.44  E-value=0.026  Score=53.37  Aligned_cols=206  Identities=9%  Similarity=0.005  Sum_probs=136.8

Q ss_pred             cHHHHHHHHH--hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           65 HFLQEITTLC--EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        65 ~~~~li~~~~--~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      .|...+.++.  +.| +.++|..+++.... -..|..|...+-..|.+.++.+++..+|+...   +..|+......+..
T Consensus        43 ~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~eell~~lFm  118 (932)
T KOG2053|consen   43 LYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPSEELLYHLFM  118 (932)
T ss_pred             HHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCcHHHHHHHHH
Confidence            4666666654  778 99999999888877 44578899999999999999999999999988   33566777777888


Q ss_pred             HHHhcCChhH----HHHHHHhcCCCChHHHHHHHHHHHhCCChh---------hHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178          142 MYSLCGFPLD----SRRVFDSLKTRNLFQWNALVSGFTKNELYT---------DVLSIFVELSSDTELKPDNFTFPCVIK  208 (311)
Q Consensus       142 ~~~~~g~~~~----A~~l~~~m~~~~~~~y~~li~~~~~~g~~~---------~a~~~~~~m~~~~~~~p~~~t~~~li~  208 (311)
                      +|.+.+.+.+    |.++++..+++--.-|+.+--.+......+         -|.+.++.+.++.|-.-+..-.-.-..
T Consensus       119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~  198 (932)
T KOG2053|consen  119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL  198 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence            9999887754    677777666554444543322222222222         344556666552331112222223334


Q ss_pred             HHhccCChhhHHHHHHH-HHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 037178          209 ACGGIADVGFGSGVHGM-AAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIIC  274 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~  274 (311)
                      .+-..|.+++|.+++.. ..+.-...+...-+--++.+.+.+++.+..++-.++.+++..-|-+.+.
T Consensus       199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~  265 (932)
T KOG2053|consen  199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD  265 (932)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH
Confidence            45677889999999944 4444344466677788899999999998888877776532222444444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0069  Score=51.41  Aligned_cols=183  Identities=8%  Similarity=-0.029  Sum_probs=100.1

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-----HHhcCChhHHHHHHHhcCCC-----ChHHHHHHHHH
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM-----YSLCGFPLDSRRVFDSLKTR-----NLFQWNALVSG  173 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~-----~~~~g~~~~A~~l~~~m~~~-----~~~~y~~li~~  173 (311)
                      +--|.+.+++++|..+.+++.   ...|-....-.++.+     .....++.-|...|.-..+.     ++.--.++.++
T Consensus       292 ~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~  368 (557)
T KOG3785|consen  292 IIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY  368 (557)
T ss_pred             eeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence            334556677777666655543   122222222222211     11112234455555444321     22234455666


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH-HHHHHHHHhcCCHH
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS-NALIAMYGKCAFVE  252 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~  252 (311)
                      +.-..++++++-.+..++. .=..-|..-| .+..+.+..|.+.+|+++|-.+....++ |..+| ..|..+|.++++.+
T Consensus       369 fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  369 FFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence            6666677777777766654 3222223222 4667777777777777777666555444 33444 34456777777777


Q ss_pred             HHHHHHhhCCCCCh--hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          253 EMVKLFEVMPERNL--VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       253 ~A~~~~~~m~~~~~--~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .|.+++-++..|..  .....+..-|-+.+++--|.+.|+++
T Consensus       446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l  487 (557)
T KOG3785|consen  446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL  487 (557)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            77777777765432  23344455666777777777777777

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.34  E-value=0.0046  Score=44.45  Aligned_cols=95  Identities=9%  Similarity=-0.098  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSN  239 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~  239 (311)
                      ++-.+...+.+.|++++|.+.|+++.. .  .|+    ...+..+..++.+.|++++|...++.+....-.  .....+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLK-K--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            344555566666777777777776654 2  122    234445666666777777777777666654211  1234455


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .+...+.+.|+.++|.+.+++..+
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHH
Confidence            566666666666666666666553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.33  E-value=0.079  Score=45.05  Aligned_cols=188  Identities=10%  Similarity=-0.018  Sum_probs=112.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH-HHHHHHHHh
Q 037178           68 QEITTLCEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN-TRLITMYSL  145 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~-~~ll~~~~~  145 (311)
                      -+-..+..+| ++..|+.-|....+..|+. .++-.-...|...|+-..|..-+....   .++||-..- ----..+.+
T Consensus        43 ElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   43 ELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhhhh
Confidence            4555666777 8888888888777732322 223333345556666666666666655   235553221 112345667


Q ss_pred             cCChhHHHHHHHhcCCCCh------HH------------HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHH
Q 037178          146 CGFPLDSRRVFDSLKTRNL------FQ------------WNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCV  206 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~~~~~------~~------------y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~l  206 (311)
                      .|.+++|..=|+...+.+.      ..            ....+..+..+|+...|+.....+.+   +.| |...|..-
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~R  195 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQAR  195 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHH
Confidence            7888888887777663211      11            12344555667788888887777765   444 55566666


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..+|...|++..|..=+....+.. .-++.++--+-..+-..|+.+.++...++..+
T Consensus       196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            777777777777766555544443 23445555556666677777777777776664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.28  E-value=0.0078  Score=55.25  Aligned_cols=62  Identities=8%  Similarity=-0.022  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      ..|.++.-.....|++++|...+++...   ..|+...|..+...+...|+.++|.+.+.+..+.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4455554444455666666666666554   3355555666666666666666666666555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.28  E-value=0.0014  Score=42.23  Aligned_cols=61  Identities=13%  Similarity=0.010  Sum_probs=40.9

Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHH
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSI  272 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~l  272 (311)
                      .+.|++++|.++++.+.+.. +-+..++..+..+|.+.|++++|.++++++.+  |+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            35677777777777777664 44667777777778888888888888877764  443344433

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.023  Score=51.36  Aligned_cols=177  Identities=15%  Similarity=0.057  Sum_probs=116.7

Q ss_pred             HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH--HHHHH--Hh
Q 037178          101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA--LVSGF--TK  176 (311)
Q Consensus       101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~--li~~~--~~  176 (311)
                      -+=++-+...|++++|.+....+. ..+ +-|...+..=+-++.+.+++++|+++.+.-....  +++.  +=.+|  .+
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence            334556678899999999999998 554 5566677777788899999999998777644221  2222  23444  47


Q ss_pred             CCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHH
Q 037178          177 NELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       177 ~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A  254 (311)
                      .++.++|+..++-      ..++. .+.-.=...|.+.|++++|..+|+.+.+.+.+- +...-..++.+    +..-.+
T Consensus        92 lnk~Dealk~~~~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~  161 (652)
T KOG2376|consen   92 LNKLDEALKTLKG------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQV  161 (652)
T ss_pred             cccHHHHHHHHhc------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhH
Confidence            7899999999873      33333 355555677899999999999999998876432 23333333322    112222


Q ss_pred             HHHHhhCCCCChhhHHHH---HHHHHhCCCcchHHHHHHhh
Q 037178          255 VKLFEVMPERNLVSWNSI---ICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       255 ~~~~~~m~~~~~~~y~~l---i~~~~~~g~~~~a~~l~~~m  292 (311)
                      . +.+...+....+|..+   ...+...|++.+|+++++..
T Consensus       162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            2 3444444333344433   45677899999999999887

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0074  Score=51.23  Aligned_cols=194  Identities=13%  Similarity=0.144  Sum_probs=121.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHh-----cccCCChhHHHHHHHHHHhhcCCCchh-hHHHHHHH
Q 037178           68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQA-----CGHEKDIEIGKRVHELVSASTQFSNDF-IINTRLIT  141 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~ll~  141 (311)
                      .|+.-|.+.+ ++.+|..+.+......|-......+..+     ......+..|.+.|...- ..+.+-|. .--.++.+
T Consensus       290 NL~iYyL~q~-dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs  367 (557)
T KOG3785|consen  290 NLIIYYLNQN-DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMAS  367 (557)
T ss_pred             hheeeecccc-cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHH
Confidence            4566688899 9999999998877655554444443333     233334566777776665 55554443 23344555


Q ss_pred             HHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH-HHHHHhccCCh
Q 037178          142 MYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC-VIKACGGIADV  216 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~-li~~~~~~g~~  216 (311)
                      ++.-..++++.+-.++.++    ..|..-|| +..+++..|.+.+|.++|-++.. ..+ -|..+|.. +.++|.+.|..
T Consensus       368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP  444 (557)
T KOG3785|consen  368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKP  444 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCc
Confidence            6666677777777776665    23444444 67788888899999998877754 222 35556654 45667888888


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSN-ALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW  269 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y  269 (311)
                      +.|+.++   .+.+-+.+....- .+.+-|-+++.+--|-+.|++++.  |++.-|
T Consensus       445 ~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW  497 (557)
T KOG3785|consen  445 QLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW  497 (557)
T ss_pred             hHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence            8887765   3444333443333 334567788888888888887763  444434

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=0.0071  Score=43.83  Aligned_cols=108  Identities=6%  Similarity=-0.061  Sum_probs=73.5

Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHHHHHHHH
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSNALIAMY  245 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~  245 (311)
                      +..++-..|+.++|+.+|++... .|....  ...+-.+-+.+...|++++|..+++......-.  .+......+.-++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            34556677888888888888887 776654  235666777888888888888888887765211  1222333334466


Q ss_pred             HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037178          246 GKCAFVEEMVKLFEVMPERNLVSWNSIICGFSE  278 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~  278 (311)
                      ...|+.++|.+.+-....++...|..-|..|..
T Consensus        86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~  118 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYAD  118 (120)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888888877666666667666666653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.26  E-value=0.076  Score=45.15  Aligned_cols=227  Identities=12%  Similarity=0.047  Sum_probs=160.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      .+..+.-.| +...|++...++.+ .+-|...|..-..+|...|.+..|..-++... +..-..+...| -+-..+...|
T Consensus       161 ql~s~~~~G-D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~y-kis~L~Y~vg  237 (504)
T KOG0624|consen  161 QLKSASGSG-DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHY-KISQLLYTVG  237 (504)
T ss_pred             HHHHHhcCC-chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHH-HHHHHHHhhh
Confidence            344555678 99999999999999 77889999999999999999999998888877 55533333444 4777888999


Q ss_pred             ChhHHHHHHHhcCC--CChH----HHHHH---------HHHHHhCCChhhHHHHHHHhhhcCCCCCCcc---hHHHHHHH
Q 037178          148 FPLDSRRVFDSLKT--RNLF----QWNAL---------VSGFTKNELYTDVLSIFVELSSDTELKPDNF---TFPCVIKA  209 (311)
Q Consensus       148 ~~~~A~~l~~~m~~--~~~~----~y~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---t~~~li~~  209 (311)
                      +.+.++...++..+  ||-.    .|-.+         +....+.++|.++++-.+...+ ..-.-..+   .+..+-.+
T Consensus       238 d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C  316 (504)
T KOG0624|consen  238 DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTC  316 (504)
T ss_pred             hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeec
Confidence            99999999888764  3331    12111         3344567889999998888766 32221223   34556677


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---h------------------h
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---V------------------S  268 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~------------------~  268 (311)
                      +...|.+.+|.+.-.+..+.. +.|+.++.--.++|.-..++++|..-|+...+.|.   .                  -
T Consensus       317 ~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRD  395 (504)
T KOG0624|consen  317 YREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRD  395 (504)
T ss_pred             ccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccch
Confidence            788899999999998887764 44588888888999999999999999988775221   1                  1


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCce
Q 037178          269 WNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVI  304 (311)
Q Consensus       269 y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~  304 (311)
                      |-. |-+--++..-.+..+.|++|   ...+.||..
T Consensus       396 YYK-ILGVkRnAsKqEI~KAYRKl---AqkWHPDNF  427 (504)
T KOG0624|consen  396 YYK-ILGVKRNASKQEITKAYRKL---AQKWHPDNF  427 (504)
T ss_pred             HHH-HhhhcccccHHHHHHHHHHH---HHhcCCccc
Confidence            211 22333444556677788888   456777753

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.25  E-value=0.042  Score=47.19  Aligned_cols=110  Identities=12%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      .+..|.-+...|+...|.++-.+.+=||-.-|-..+.+++..|+|++-.++... +      -+..-|-.++.+|.+.|.
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHHHHCCC
Confidence            334455556667777777777777767777777777777777777666554321 1      133666777777777777


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..+|..+...          ..+..-+..|.++|++.+|.+.--+..
T Consensus       253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            7777766654          122456667777777777766554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.24  E-value=0.081  Score=43.68  Aligned_cols=55  Identities=9%  Similarity=0.061  Sum_probs=32.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhH---HHHHHhcccCCChhHHHHHHHHHH
Q 037178           69 EITTLCEESKSLNKALSLLQENLHNADL-KEAT---GVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~---~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ....+.+.| ++++|.+.|+++....|+ ....   -.+..++.+.++.+.|...+++..
T Consensus        38 ~A~~~~~~g-~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi   96 (243)
T PRK10866         38 TAQQKLQDG-NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   96 (243)
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            344445666 777777777777662222 2222   234455566777777777777666

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.23  E-value=0.0044  Score=54.29  Aligned_cols=88  Identities=8%  Similarity=-0.100  Sum_probs=74.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      ...+...| ++++|++.|++..+ .+.+...|..+..++...|++++|...++.+. +.. +.+...|..+..+|...|+
T Consensus         9 a~~a~~~~-~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDD-DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCCHHHHHHHHHHHHHhCC
Confidence            44566778 99999999999999 66667788888889999999999999999998 554 3456778888999999999


Q ss_pred             hhHHHHHHHhcC
Q 037178          149 PLDSRRVFDSLK  160 (311)
Q Consensus       149 ~~~A~~l~~~m~  160 (311)
                      +++|...|++..
T Consensus        86 ~~eA~~~~~~al   97 (356)
T PLN03088         86 YQTAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.22  E-value=0.081  Score=49.45  Aligned_cols=226  Identities=14%  Similarity=0.034  Sum_probs=156.1

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc------
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN------  131 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~------  131 (311)
                      .|++.-|-++  -|+..+ +++.|.+..++..+  ..-+...|..+...+...+++.+|..+.+...++.|...      
T Consensus       477 dp~~if~lal--q~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  477 DPLVIFYLAL--QYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             CchHHHHHHH--HHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            4544444333  455667 89999999998888  455678899999999999999999999988775555311      


Q ss_pred             ------------hhhHHHHHHHHHHhc------CChhHHHHHHHhcC---------------------------------
Q 037178          132 ------------DFIINTRLITMYSLC------GFPLDSRRVFDSLK---------------------------------  160 (311)
Q Consensus       132 ------------~~~~~~~ll~~~~~~------g~~~~A~~l~~~m~---------------------------------  160 (311)
                                  -..|+..++..+-..      |+-...+++...+.                                 
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence                        122333333333210      11111111111111                                 


Q ss_pred             -------CCC------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178          161 -------TRN------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       161 -------~~~------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m  226 (311)
                             .|+      ...|......+.+.+..++|...+.+...   +.| ....|...-..+...|..++|.+.|...
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A  710 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA  710 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence                   011      12366777888888999999888877754   444 3445655556677788899999988877


Q ss_pred             HHhCCCCcHHHHHHHHHHHHhcCCHHHHHH--HHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVK--LFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..-. +.++...+++..++.+.|+..-|..  ++.++.+   .|...|-.+-..+-+.|+.+.|.+.|.-.
T Consensus       711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            7664 4468889999999999998877777  8888886   35679999999999999999999999876

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.22  E-value=0.0059  Score=47.52  Aligned_cols=129  Identities=9%  Similarity=0.039  Sum_probs=79.0

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      ....|..+...+...| ++++|...|++.....|+    ...+..+...+.+.|++++|...+++.. +.. +-+...+.
T Consensus        34 ~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~  110 (172)
T PRK02603         34 EAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELN-PKQPSALN  110 (172)
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHH
Confidence            3445677777777888 888888888887762222    3567777777888888888888888877 432 23455566


Q ss_pred             HHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          138 RLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      .+...|...|+...+..-++...                 ..+++|.+.+++...   ..|+.  |..++..+...|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~---~~p~~--~~~~~~~~~~~~~  166 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIR---LAPNN--YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHh---hCchh--HHHHHHHHHhcCc
Confidence            66667777666544443222210                 124566666666544   23333  5555555555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.16  E-value=0.0076  Score=52.80  Aligned_cols=100  Identities=12%  Similarity=0.023  Sum_probs=75.9

Q ss_pred             HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChh
Q 037178          105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~  181 (311)
                      ..+...|+++.|.+.|+++. +.. +-+...|..+..+|.+.|++++|...+++..+   .+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al-~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAI-DLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            34456788999999999888 544 44566777788888899999999998888753   36677888888889999999


Q ss_pred             hHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          182 DVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      +|...|++...   +.|+.......+..
T Consensus        88 eA~~~~~~al~---l~P~~~~~~~~l~~  112 (356)
T PLN03088         88 TAKAALEKGAS---LAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence            99999988866   55665555544433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.15  E-value=0.034  Score=50.87  Aligned_cols=211  Identities=11%  Similarity=0.037  Sum_probs=114.2

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD  157 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~  157 (311)
                      +-++|.+..+...+ ...+.+.|+.+.-.+-...++++|...|..+. +.+ +-|...+--|--.-.+.|+++.....-.
T Consensus        56 ~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~  133 (700)
T KOG1156|consen   56 KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIE-KDNLQILRDLSLLQIQMRDYEGYLETRN  133 (700)
T ss_pred             chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            55555555555554 33444555555555555555666666665555 433 3334444333333344455544444433


Q ss_pred             hcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH------HHhccCChhhHHHHHHHHHH
Q 037178          158 SLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK------ACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       158 ~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~------~~~~~g~~~~a~~~~~~m~~  228 (311)
                      +..+   .....|....-++.-.|+...|..+.++..+...-.|+...|.....      ...+.|.+++|.+.+..-..
T Consensus       134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence            3332   23455777777777888888888888887762333466555543332      33566666676666654332


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhCCCcchHH-HHHHhh
Q 037178          229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNS-IICGFSENGFSCESF-DLLIKM  292 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~-li~~~~~~g~~~~a~-~l~~~m  292 (311)
                      . +.-....-..-.+.+.+.|++++|..++..+.+  ||-.-|+. +..++.+-.+.-++. .+|...
T Consensus       214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l  280 (700)
T KOG1156|consen  214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL  280 (700)
T ss_pred             H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            2 222233334555677788888888888888876  44444444 444444233333333 455544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.15  E-value=0.026  Score=50.55  Aligned_cols=178  Identities=10%  Similarity=0.018  Sum_probs=123.7

Q ss_pred             HHHHHHHHHhhcc--CCCChhhHHHHHHhcccCC---ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHH
Q 037178           80 LNKALSLLQENLH--NADLKEATGVLLQACGHEK---DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRR  154 (311)
Q Consensus        80 ~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~  154 (311)
                      -+++.++++....  ..-+..+|..+...--..-   ..+....+++.+.......|+. +|..+|+.--+..-++.|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence            4456666666555  3334444444333211111   2556666777766334445554 55568888888888999999


Q ss_pred             HHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          155 VFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       155 l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      +|.+..+     .++..++++|.-||. ++..-|.++|+--....   +|.- --...++-+...++-..++.+|++...
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~  463 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLT  463 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence            9998874     277888999998876 57789999998744313   3333 334667778888999999999999998


Q ss_pred             hCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          229 MGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       229 ~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .++.+|  ..+|..+|+--..-|++..+.++-+++.
T Consensus       464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            877765  5899999999999999998888877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.13  E-value=0.011  Score=44.70  Aligned_cols=83  Identities=8%  Similarity=0.020  Sum_probs=40.5

Q ss_pred             HHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChh
Q 037178          142 MYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~  217 (311)
                      .+...|++++|.++|+...  .| +..-|-.|..++-..|++++|++.|.....   +.| |...+-.+-.++...|+.+
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLACDNVC  120 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHcCCHH
Confidence            3344555555555555443  22 334444555555555555555555555443   223 2344445555555555555


Q ss_pred             hHHHHHHHHH
Q 037178          218 FGSGVHGMAA  227 (311)
Q Consensus       218 ~a~~~~~~m~  227 (311)
                      .|.+.|+..+
T Consensus       121 ~A~~aF~~Ai  130 (157)
T PRK15363        121 YAIKALKAVV  130 (157)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.12  E-value=0.022  Score=48.23  Aligned_cols=124  Identities=9%  Similarity=0.002  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHh---hcCCCch--
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH--NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSA---STQFSND--  132 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~~--  132 (311)
                      .|+..-..|-..+ ++++|.+.|.+.-.  .+.+     ...|......+ +.+++++|...+++..+   +.| .++  
T Consensus        37 ~y~~Aa~~fk~~~-~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~a  113 (282)
T PF14938_consen   37 LYEKAANCFKLAK-DWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred             HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            4777777777778 88888888887755  1111     12233333333 23366666666555441   112 111  


Q ss_pred             hhHHHHHHHHHHhc-CChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          133 FIINTRLITMYSLC-GFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       133 ~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      ...+..+-..|-+. |++++|.+.|++..+     .    -...+..+...+.+.|++++|.++|++..
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            22344444445444 555555555544321     1    11234445555555555555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.10  E-value=0.0099  Score=46.06  Aligned_cols=78  Identities=5%  Similarity=-0.148  Sum_probs=48.4

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      ..|..+...+...| ++++|+..|++.....++    ..++..+...+...|+.++|...++... ... +.....++.+
T Consensus        36 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~-~~~~~~~~~l  112 (168)
T CHL00033         36 FTYYRDGMSAQSEG-EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCcHHHHHHH
Confidence            45666666777777 888888888877652222    2356666677777777777777777776 332 2223344445


Q ss_pred             HHHHH
Q 037178          140 ITMYS  144 (311)
Q Consensus       140 l~~~~  144 (311)
                      ...|.
T Consensus       113 a~i~~  117 (168)
T CHL00033        113 AVICH  117 (168)
T ss_pred             HHHHH
Confidence            55554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.10  E-value=0.037  Score=51.57  Aligned_cols=199  Identities=7%  Similarity=-0.076  Sum_probs=129.9

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .|...|..+--+..+.| +++.+.+.|++... .-.....|..+-..+...|.-..|..+++.-.....-++|...+-..
T Consensus       321 nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            46777888888888888 88888888888777 55667778888888888888888888887755122222344444333


Q ss_pred             HHHHHhc-CChhHHHHHHHhcC--------CCChHHHHHHHHHHHhC-----------CChhhHHHHHHHhhhcCCCCCC
Q 037178          140 ITMYSLC-GFPLDSRRVFDSLK--------TRNLFQWNALVSGFTKN-----------ELYTDVLSIFVELSSDTELKPD  199 (311)
Q Consensus       140 l~~~~~~-g~~~~A~~l~~~m~--------~~~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~  199 (311)
                      -..|.+. |.++++...-.+..        .-....|-.+.-+|...           ....++++.+++..+..+-.|+
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            3334333 55555443332221        11334444444444322           2345677777777653555566


Q ss_pred             cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +..|.++-.  +..++++.|.....+..+.+-.-+...|.-|.-.+...+++.+|+.+.+...
T Consensus       480 ~if~lalq~--A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  480 VIFYLALQY--AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            665655544  4455788888888888887656788888888888888888988888887655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.10  E-value=0.033  Score=52.51  Aligned_cols=81  Identities=14%  Similarity=0.080  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                      .|.=+....-..|+.+.|+.+|...+.          |-++++..|-.|+.++|.++-++      .-|....--|.+.|
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~Y  977 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMY  977 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHh
Confidence            333344444445666666666665554          55666667777777777766544      23666777788888


Q ss_pred             HhcCCHHHHHHHHhhCC
Q 037178          246 GKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~  262 (311)
                      -..|++.+|...|.+..
T Consensus       978 En~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  978 ENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            88899998888887665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.013  Score=55.02  Aligned_cols=51  Identities=4%  Similarity=0.107  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++...|-.|+.++|-++-++-  .|..+.-.|.+-|-+.|++.+|..+|.+.
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4444444455555555555432  34455556777888888888888887765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.07  E-value=0.016  Score=52.99  Aligned_cols=222  Identities=11%  Similarity=0.087  Sum_probs=128.0

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHh---------hccCCCChhhHHHHHHhcccCCChhH--HHHHHHHHHhhcC
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQE---------NLHNADLKEATGVLLQACGHEKDIEI--GKRVHELVSASTQ  128 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~---------m~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~~~~g  128 (311)
                      .+..+.+.+-+..|.++| .+++|..+---         +-....+.-.+++.=++|.+..+..-  ...-+++++ +.|
T Consensus       553 ~~~evp~~~~m~q~Ieag-~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k-~rg  630 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERG-LFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERK-KRG  630 (1081)
T ss_pred             ecccccccccchhhhhcc-chhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH-hcC
Confidence            344455666667777788 77777654211         10012233445555566666555443  233345666 667


Q ss_pred             CCchhhHHHHH----------HHHHHhcCChhHHHHHHHhcCC----------CCh----------HHH-------HHHH
Q 037178          129 FSNDFIINTRL----------ITMYSLCGFPLDSRRVFDSLKT----------RNL----------FQW-------NALV  171 (311)
Q Consensus       129 ~~~~~~~~~~l----------l~~~~~~g~~~~A~~l~~~m~~----------~~~----------~~y-------~~li  171 (311)
                      -.|+.......          .+.+.++|.-..|+++|.+|+-          .+.          ..|       .+..
T Consensus       631 e~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA  710 (1081)
T KOG1538|consen  631 ETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA  710 (1081)
T ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence            66765542211          1223344444444444444320          000          011       2334


Q ss_pred             HHHHhCCChhhHHHHHH-----HhhhcCCCC---CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          172 SGFTKNELYTDVLSIFV-----ELSSDTELK---PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~-----~m~~~~~~~---p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      ..+..+|+.++|..+..     +|.-+-+-+   .+..+...+..-+.+...+..|-++|..|-+.         ..+++
T Consensus       711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVq  781 (1081)
T KOG1538|consen  711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQ  781 (1081)
T ss_pred             HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhh
Confidence            45555666666665531     111001112   23445555666666777788888888877554         37888


Q ss_pred             HHHhcCCHHHHHHHHhhCCC--CCh-----------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          244 MYGKCAFVEEMVKLFEVMPE--RNL-----------VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~--~~~-----------~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .....|++++|+.+-+...+  +|+           .-|.-.=.+|.++|+-.+|..+++++
T Consensus       782 lHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             heeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence            89999999999999999886  443           23455667899999999999999988

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.04  E-value=0.086  Score=48.35  Aligned_cols=238  Identities=9%  Similarity=-0.015  Sum_probs=142.8

Q ss_pred             CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178           58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      ....+.++|..+--.+-... ++++|+..|..... .+.|...|.-+--.-++.|+++.......+.. +.. +.....|
T Consensus        70 ~d~~S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL-ql~-~~~ra~w  146 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL-QLR-PSQRASW  146 (700)
T ss_pred             cCcccchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH-Hhh-hhhHHHH
Confidence            44567788888777776666 88999999988888 55556667666555567788887777777766 332 3344567


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC-----CChHHHHHHHH------HHHhCCChhhHHHHHHHhhhcCCCCCCcchHH-
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVS------GFTKNELYTDVLSIFVELSSDTELKPDNFTFP-  204 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~------~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~-  204 (311)
                      ..+.-++--.|+...|..+.+...+     ++...|.-...      ...++|..++|.+.+..-+.   ...|...|. 
T Consensus       147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e  223 (700)
T KOG1156|consen  147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhh
Confidence            7777777778888888888877652     45555554433      33456777777777665543   223444443 


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHH-HHHHHHHHHhcCCHHHHH-HHHhhCCC--CChhhHHHHHHHHHh-C
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFV-SNALIAMYGKCAFVEEMV-KLFEVMPE--RNLVSWNSIICGFSE-N  279 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~-~~~~~m~~--~~~~~y~~li~~~~~-~  279 (311)
                      +-..-+.+.|++++|..++..+...+  ||..- |-.+..++++--+.-++. .+|....+  |-...-..+-..... .
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e  301 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE  301 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence            44556678888999999988888774  44444 444445554333333333 55555544  111111111111112 2


Q ss_pred             CCcchHHHHHHhhhhccCCCCCCcee
Q 037178          280 GFSCESFDLLIKMMGCEEGFIPDVIT  305 (311)
Q Consensus       280 g~~~~a~~l~~~m~~~~~g~~P~~~t  305 (311)
                      .-.+..-+++..+  .+.|+.+-...
T Consensus       302 el~~~vdkyL~~~--l~Kg~p~vf~d  325 (700)
T KOG1156|consen  302 ELKEIVDKYLRPL--LSKGVPSVFKD  325 (700)
T ss_pred             hhHHHHHHHHHHH--hhcCCCchhhh
Confidence            2233445556666  67777654333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.04  E-value=0.0071  Score=45.65  Aligned_cols=83  Identities=13%  Similarity=-0.026  Sum_probs=37.7

Q ss_pred             HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178           73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      +.+.| ++++|..+|+.... .+-+..-|-.+.-+|-..|++++|...|.... ... +-|...+-.+-.++.+.|+.+.
T Consensus        45 ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         45 LMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHHHHHHHcCCHHH
Confidence            33444 55555555555444 22223333344444444455555555555544 333 2333333334455555555555


Q ss_pred             HHHHHHh
Q 037178          152 SRRVFDS  158 (311)
Q Consensus       152 A~~l~~~  158 (311)
                      |++.|+.
T Consensus       122 A~~aF~~  128 (157)
T PRK15363        122 AIKALKA  128 (157)
T ss_pred             HHHHHHH
Confidence            5554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.03  E-value=0.014  Score=55.83  Aligned_cols=160  Identities=12%  Similarity=0.040  Sum_probs=107.9

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..|-..|.... +...|...|++..+ ...|..........+++..+++.|..+.-..-++.....-..-|--+--.|
T Consensus       494 af~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy  572 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY  572 (1238)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence            4666666666666 77778888888777 666677788888888888888888877333321111001111122233446


Q ss_pred             HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH--HHHhccCChhh
Q 037178          144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI--KACGGIADVGF  218 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li--~~~~~~g~~~~  218 (311)
                      .+.++..+|..-|....+   .|...|..+..+|.++|++..|.++|.+...   +.|+.. |...-  -.-|..|.+.+
T Consensus       573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~-y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSK-YGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhH-HHHHHHHHHHHHhhhHHH
Confidence            677888888888876543   3777889999999999999999999988855   667543 22222  22477889999


Q ss_pred             HHHHHHHHHHh
Q 037178          219 GSGVHGMAAKM  229 (311)
Q Consensus       219 a~~~~~~m~~~  229 (311)
                      +...++.....
T Consensus       649 ald~l~~ii~~  659 (1238)
T KOG1127|consen  649 ALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHHHHH
Confidence            98888877654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.089  Score=43.87  Aligned_cols=153  Identities=8%  Similarity=-0.016  Sum_probs=97.7

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-----------------Ch-----
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR-----------------NL-----  164 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----------------~~-----  164 (311)
                      ..+.|+.+.|.+-|....+-.|+.| ...||.-+.- .+.|+.+.|++...++.++                 |+     
T Consensus       154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN  231 (459)
T KOG4340|consen  154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN  231 (459)
T ss_pred             eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence            3467888888888888875556554 4567744443 4557888888877765421                 21     


Q ss_pred             ----------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178          165 ----------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD  234 (311)
Q Consensus       165 ----------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  234 (311)
                                ..+|.-...+.+.|+++.|.+-+.+|.-+..-..|.+|...+.-.- -.+++.+..+-+.-+...+ +-.
T Consensus       232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP  309 (459)
T KOG4340|consen  232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP  309 (459)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence                      1233334445677888888888888864344556777665443221 2344555555555555554 345


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          235 VFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..|+..++-.|||+.-++-|-+++.+-..
T Consensus       310 ~ETFANlLllyCKNeyf~lAADvLAEn~~  338 (459)
T KOG4340|consen  310 PETFANLLLLYCKNEYFDLAADVLAENAH  338 (459)
T ss_pred             hHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence            67888888889999888888888876554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.029  Score=45.85  Aligned_cols=28  Identities=11%  Similarity=-0.025  Sum_probs=19.1

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH   92 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~   92 (311)
                      ..|+.-+.++++-. .+++|..-++....
T Consensus        70 q~wT~r~~~l~kLR-~~~~a~~EL~~f~~   97 (366)
T KOG2796|consen   70 QLWTVRLALLVKLR-LFQNAEMELEPFGN   97 (366)
T ss_pred             HHHHHHHHHHHHHh-hhHHHHhhhhhhcc
Confidence            34677777778777 77877766655554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.043  Score=49.06  Aligned_cols=213  Identities=10%  Similarity=-0.113  Sum_probs=136.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH-------HH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN-------TR  138 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~-------~~  138 (311)
                      +..+.++.-+.. +++.|+.-+....++.-+..-++..-.++...|...+....-+... +.|.+ ...-|       ..
T Consensus       227 ek~lgnaaykkk-~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKK-DFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAV-EVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhh-hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhHH-HHHHHHHHHHHHHH
Confidence            456677777777 8999999998888844555556666677888888877777766666 44421 11122       22


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIAD  215 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~  215 (311)
                      +-++|.+.++++.|...|.+...  ++..       ...+....+++....+...-   +.|... -...--..+.+.|+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence            34466777888888888877432  1211       11233344555554444432   444431 12233556778889


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +..|.+.|.++++.. +-|...|....-+|.+.|.+..|++-.+...+.|.   ..|..=..++.-..++++|++.|.+-
T Consensus       374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887 66888999999999999999888887777665433   23333333334445777777777766

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.88  E-value=0.14  Score=39.79  Aligned_cols=132  Identities=7%  Similarity=-0.054  Sum_probs=87.4

Q ss_pred             CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCCcch
Q 037178          128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPDNFT  202 (311)
Q Consensus       128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~t  202 (311)
                      ...|++..--.|-.+..+.|+..+|...|++-..    .|....-.+..+....+++..|...++++.+ .+- .-+..+
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-~~pa~r~pd~  162 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME-YNPAFRSPDG  162 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh-cCCccCCCCc
Confidence            3456655555677777788888888888777542    4666677777777777888888888888766 331 112345


Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ...+.+.+...|+..+|+.-|+...+.  .|+...---.-..+.+.|+.++|..-+.++.
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            566677778888888888888777665  4555444445556677777776655444443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.86  E-value=0.017  Score=42.26  Aligned_cols=97  Identities=10%  Similarity=-0.006  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      ..++.++|-++++.|+++....+++..=.-|+       .+-...+.          ........|+..+..+++.+|+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~   64 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD----------YPPSSPLYPTSRLLIAIVHSFGY   64 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc----------cCCCCCCCCCHHHHHHHHHHHHh
Confidence            45566666677777776666666655321110       00000000          11124566777777777777777


Q ss_pred             cCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHH
Q 037178          213 IADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYG  246 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~  246 (311)
                      .|++..|.++++...+. +++.+..+|..|++-..
T Consensus        65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            77777777777776543 56666777777776443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.82  E-value=0.036  Score=51.01  Aligned_cols=140  Identities=4%  Similarity=-0.142  Sum_probs=91.6

Q ss_pred             CCCchhhHHHHHHHHHHhc-----CChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCC--------ChhhHHHHHHHhh
Q 037178          128 QFSNDFIINTRLITMYSLC-----GFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNE--------LYTDVLSIFVELS  191 (311)
Q Consensus       128 g~~~~~~~~~~ll~~~~~~-----g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g--------~~~~a~~~~~~m~  191 (311)
                      +.+.+...|...+.+....     +..+.|..+|++..+  | +...|..+..++....        +...+.+..++..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3366777777777775443     236678888887653  4 3344544433332221        2233344444432


Q ss_pred             hcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178          192 SDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW  269 (311)
Q Consensus       192 ~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y  269 (311)
                      .......+...|.++.-.....|++++|...+++..+.+  |+...|..+...|...|+.++|.+.+++...  |...+|
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            201122344667777666667899999999999998886  5788999999999999999999999998774  444444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.79  E-value=0.081  Score=44.80  Aligned_cols=126  Identities=9%  Similarity=-0.049  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhC-CChhhHHHHHHHhhhc---CCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-----Cc
Q 037178          166 QWNALVSGFTKN-ELYTDVLSIFVELSSD---TELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI-----GD  234 (311)
Q Consensus       166 ~y~~li~~~~~~-g~~~~a~~~~~~m~~~---~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~  234 (311)
                      .+..+...|-.. |++++|.+.|++..+-   .+ .+.  ..++..+...+.+.|++++|.++|++.......     .+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            455667777777 8999999988876431   22 121  245677778889999999999999998765432     22


Q ss_pred             HH-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhC--CCcchHHHHHHhh
Q 037178          235 VF-VSNALIAMYGKCAFVEEMVKLFEVMPERNL--------VSWNSIICGFSEN--GFSCESFDLLIKM  292 (311)
Q Consensus       235 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~y~~li~~~~~~--g~~~~a~~l~~~m  292 (311)
                      .. .|-..+-++...|+...|.+.|++..+.++        ..-..||.+|-..  ..+++|..-|+.+
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            22 233344466778999999999998775321        2344556665432  2344455555444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.77  E-value=0.047  Score=50.53  Aligned_cols=165  Identities=9%  Similarity=0.019  Sum_probs=86.1

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH--------HHHHHHHhcCChhHHHHHHHhcCCCCh
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT--------RLITMYSLCGFPLDSRRVFDSLKTRNL  164 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~--------~ll~~~~~~g~~~~A~~l~~~m~~~~~  164 (311)
                      ..|.+..|..+.......-+++.|+..|-+...-.|++.-...-+        +=+.+|  -|++++|+++|-+|.++|.
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL  765 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL  765 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh
Confidence            457777888777776666667777776665542233322211111        112222  3888999999888887765


Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH-------------HHHH----
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH-------------GMAA----  227 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~-------------~~m~----  227 (311)
                      .     |..+.+.|+|-.+.++++.-..+..-.--...|+.+-..+.....+++|.+.+             -++.    
T Consensus       766 A-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~  840 (1189)
T KOG2041|consen  766 A-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE  840 (1189)
T ss_pred             h-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence            3     34445555555555554331110000001123333333333333333333222             1111    


Q ss_pred             ----HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178          228 ----KMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER  264 (311)
Q Consensus       228 ----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  264 (311)
                          ...++-+....-.+.+++.+.|.-++|.+.|-+-..|
T Consensus       841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p  881 (1189)
T KOG2041|consen  841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP  881 (1189)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence                1123556667777778888888888887777666544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.77  E-value=0.02  Score=41.96  Aligned_cols=101  Identities=12%  Similarity=-0.026  Sum_probs=77.0

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh--cCCCChHHHHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS--LKTRNLFQWNALVSG  173 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~--m~~~~~~~y~~li~~  173 (311)
                      |..++..+|.++++.|+++....+.+..-   |+..+...-.         +.       +..  -..|+..+..+++.+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHH
Confidence            56789999999999999999999887644   5544432100         00       111  124788999999999


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      |+.+|++..|+++.+...+..++.-+..+|..|++-+...-+
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999987768888888999999987755444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.77  E-value=0.0034  Score=40.35  Aligned_cols=49  Identities=12%  Similarity=0.077  Sum_probs=24.9

Q ss_pred             CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178          110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK  160 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~  160 (311)
                      .|++++|.++++.+. ... +-+..++-.+..+|.+.|++++|..+++++.
T Consensus         4 ~~~~~~A~~~~~~~l-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKAL-QRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHH-HHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455555555555555 322 2234444445555555555555555555554

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.77  E-value=0.045  Score=52.61  Aligned_cols=123  Identities=11%  Similarity=0.013  Sum_probs=50.3

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh-----HHHHHHHHH
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL-----FQWNALVSG  173 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-----~~y~~li~~  173 (311)
                      .|..+...|+..-+..+|...|+... +.+ .-|........+.|++..+++.|..+.-.-.+.+.     ..|--.--.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAF-eLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAF-ELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            34444444444444444444444444 222 22333444444445555555554444222211110     111112222


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m  226 (311)
                      |.+.++..+|+.-|+...+   +.| |...|..+.++|...|++..|.++|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             ccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            3344444444444444432   233 2334445555555555555555555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.69  E-value=0.15  Score=40.88  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-CCC---ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-NAD---LKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ...+.+.| ++.+|...|+.+.. .+.   -....-.+..++-+.|+.+.|...++...
T Consensus        12 a~~~~~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi   69 (203)
T PF13525_consen   12 ALEALQQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI   69 (203)
T ss_dssp             HHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33445666 67777777777665 111   12334455556666677777776666665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.68  E-value=0.2  Score=38.90  Aligned_cols=127  Identities=12%  Similarity=-0.051  Sum_probs=71.6

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CChHHH
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQW  167 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y  167 (311)
                      ..|++..-..+..+..+.|+..+|...|.+.. ..-+..|....-.+-++....++...|...++++-+     +...+-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            45555555566666666777777777777665 444555666666666666666777776666666542     122233


Q ss_pred             HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178          168 NALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~  223 (311)
                      -.+...+...|++..|..-|+....   .-|+...-...-..+.+.|+.+++..-+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            4455566666666666666666655   3344332222233344555555544433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.66  E-value=0.097  Score=47.15  Aligned_cols=159  Identities=13%  Similarity=0.023  Sum_probs=111.4

Q ss_pred             HHHHhcCCCHHHHHHHHH--hhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           71 TTLCEESKSLNKALSLLQ--ENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~--~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      ....-++ +++++.++.+  ++.. .....-...+++-+-+.|..+.|.++-.+-.             .-.+...+.|+
T Consensus       269 k~av~~~-d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRG-DFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT--HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred             HHHHHcC-Chhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence            3445667 8998887776  2232 1124557888888889998888887755432             23556688999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          149 PLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       149 ~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      ++.|.++.++..  +...|..|.+...+.|+++-|.+.|++...          |..|+--|.-.|+.+...++.+....
T Consensus       334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999887776  666899999999999999999999999877          77888888889999888888888777


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .|      -+|....++.-.|+++++.+++.+-.
T Consensus       402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  402 RG------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             TT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             cc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            77      24666666677788888888877644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.63  E-value=0.18  Score=37.58  Aligned_cols=125  Identities=11%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178          101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY  180 (311)
Q Consensus       101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~  180 (311)
                      ..++..+...+.......+++.+. ..+ ..+...+|.++..|++.+. ++..+.++.  ..+......++..|.+.+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~   85 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY   85 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence            445555555666777777777776 555 3566677777777776532 333333331  22333334456666666666


Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGI-ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG  246 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  246 (311)
                      +++..++.++..          |...++.+... ++++.|.++...      ..+...|..++..+.
T Consensus        86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            666666655543          22233333222 555555555543      124445555555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.57  E-value=0.01  Score=38.20  Aligned_cols=58  Identities=16%  Similarity=-0.025  Sum_probs=28.0

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhh
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA-FVEEMVKLFEV  260 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~  260 (311)
                      +|..+-..+...|++++|...|.+..+.. +.+..+|..+..+|.+.| ++++|.+.+++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            34444444445555555555555554443 334445555555555555 45555554443

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.47  E-value=0.026  Score=46.60  Aligned_cols=114  Identities=10%  Similarity=0.038  Sum_probs=77.1

Q ss_pred             CChhhHHHHHHhcc-----cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH
Q 037178           95 DLKEATGVLLQACG-----HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA  169 (311)
Q Consensus        95 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~  169 (311)
                      .|-..|...+..+.     +.+.++-....++.|. +.|+..|..+|+.|++.+-|....-.                |.
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~----------------nv  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQ----------------NV  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccH----------------HH
Confidence            34445555444443     4567788888899999 99999999999999988876433211                11


Q ss_pred             HHHHHHhC-CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHH
Q 037178          170 LVSGFTKN-ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV-GFGSGVHGMA  226 (311)
Q Consensus       170 li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m  226 (311)
                      +=..|..- .+-+-+++++++|.. .|+.||..+=..+++++++.+-. .+..++.-.|
T Consensus       128 fQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  128 FQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence            11111111 234668899999999 99999999999999999887743 2333333333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.47  E-value=0.012  Score=37.38  Aligned_cols=10  Identities=10%  Similarity=-0.041  Sum_probs=3.2

Q ss_pred             HhcCCHHHHH
Q 037178          246 GKCAFVEEMV  255 (311)
Q Consensus       246 ~~~g~~~~A~  255 (311)
                      ...|++++|.
T Consensus        42 ~~~g~~~~A~   51 (65)
T PF13432_consen   42 YQQGRYDEAL   51 (65)
T ss_dssp             HHTT-HHHHH
T ss_pred             HHcCCHHHHH
Confidence            3333333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.45  E-value=0.062  Score=44.86  Aligned_cols=96  Identities=7%  Similarity=-0.073  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhCC--CCcHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMGL--IGDVFVS  238 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~  238 (311)
                      ..|+..+..+.+.|++++|...|+.+..   ..|+.    ..+-.+...+...|++++|...|..+.+.--  +.....+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            3455555555666777777777777765   33443    2555666677777777777777777765421  1123344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      -.+...|.+.|+.++|.++|++..+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4445566667777777777766543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.43  E-value=0.028  Score=46.75  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhH
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDV  183 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a  183 (311)
                      ..+.+++++|...|.+.+ +.. +-|.+-|..--.+|++.|.++.|.+=.+.-..   .-..+|..|-.+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI-~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAI-ELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHH-hcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            345677777777777776 443 44566666677777777777777766665443   2345677777777777777777


Q ss_pred             HHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          184 LSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       184 ~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      .+.|++..+   +.|+-.+|-.=++..
T Consensus       169 ~~aykKaLe---ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  169 IEAYKKALE---LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHhhhc---cCCCcHHHHHHHHHH
Confidence            777777655   677777776666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.41  E-value=0.011  Score=37.48  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=32.3

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ..+.+.| ++++|.+.|++..+ .+-+...+..+..++...|++++|...|+.+.
T Consensus         5 ~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    5 RALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455666 66666666666666 43345556666666666666666666666665

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.39  E-value=0.03  Score=46.19  Aligned_cols=110  Identities=13%  Similarity=0.196  Sum_probs=78.3

Q ss_pred             HHHHHHhcC--CCChHHHHHHHHHHHhC-----CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC----------
Q 037178          152 SRRVFDSLK--TRNLFQWNALVSGFTKN-----ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA----------  214 (311)
Q Consensus       152 A~~l~~~m~--~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g----------  214 (311)
                      .++.|....  ++|-.+|-+.+..|...     +.++-....++.|++ .|+.-|..+|+.|++.+=+..          
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            345555555  56667777777766543     455555666778888 888888888888888775443          


Q ss_pred             ------ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 037178          215 ------DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV-EEMVKLFEVMP  262 (311)
Q Consensus       215 ------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~  262 (311)
                            +-+-+.+++++|...|+.||..+-..|++++++.|-. .+..++.--|.
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  2345789999999999999999999999999987753 23333333343

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.38  E-value=0.036  Score=46.11  Aligned_cols=92  Identities=12%  Similarity=-0.003  Sum_probs=69.5

Q ss_pred             HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178           73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      +.+.+ ++++|+..|.+... .+-|...|.--..+|++.|..+.|.+-.+... ..+ +.-..+|..|-.+|...|++++
T Consensus        91 ~m~~~-~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNK-DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhh-hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            44567 88888888888888 55666777777888888888888888877776 443 3346688888888888888888


Q ss_pred             HHHHHHhcC--CCChHHH
Q 037178          152 SRRVFDSLK--TRNLFQW  167 (311)
Q Consensus       152 A~~l~~~m~--~~~~~~y  167 (311)
                      |.+.|++..  +|+-.+|
T Consensus       168 A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESY  185 (304)
T ss_pred             HHHHHHhhhccCCCcHHH
Confidence            888888765  4544444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.37  E-value=0.56  Score=42.48  Aligned_cols=125  Identities=10%  Similarity=0.039  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .+|...|..--+..-.+.|..+|.+.++ .+..+ +++.++++|.-+|. ++.+-|.++|+.=.+. +.-+..-....++
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence            4688888888888889999999999998 77777 77888999998886 5788899998763332 2344556678888


Q ss_pred             HHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          244 MYGKCAFVEEMVKLFEVMPER------NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      -+...|+-..|..+|++....      ...+|..+|.--..-|+...+.++-+++
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR  498 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            888999999999999998753      3468999999999999999999988887

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.32  E-value=0.0048  Score=40.89  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVMPE---------RN-LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~-~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +|+.+...|.+.|++++|+..|++..+         ++ ..+++.+...|...|++++|++.+++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444444444444444444443331         11 234444555555555555555555443

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.31  E-value=0.11  Score=37.62  Aligned_cols=50  Identities=8%  Similarity=-0.092  Sum_probs=23.8

Q ss_pred             cCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178          109 HEKDIEIGKRVHELVSASTQFSND--FIINTRLITMYSLCGFPLDSRRVFDSL  159 (311)
Q Consensus       109 ~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m  159 (311)
                      ..|+.++|..+|++.. ..|+...  ...+-.+-+.|-..|++++|..+|++.
T Consensus        13 ~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~   64 (120)
T PF12688_consen   13 SLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA   64 (120)
T ss_pred             hcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555555555555 4444332  122333444444445555555555443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.24  E-value=0.00079  Score=50.68  Aligned_cols=129  Identities=11%  Similarity=0.076  Sum_probs=85.1

Q ss_pred             HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChh
Q 037178          102 VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       102 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~  181 (311)
                      .+++.+.+.+.++....+++.+. ..+...+....+.|+..|++.+..++..++++....   .....++..|.+.|.++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~   87 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE   87 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence            35677778888888888999988 666567788899999999999888888888774332   44456777778888888


Q ss_pred             hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      +|..++.++.. ..-         .+..+...++++.|.++..+      ..+..+|..+++.+...++
T Consensus        88 ~a~~Ly~~~~~-~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   88 EAVYLYSKLGN-HDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHCCTT-HTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHccc-HHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence            88888877754 111         11113444556666543322      2345667777766655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.11  Score=42.63  Aligned_cols=143  Identities=7%  Similarity=-0.057  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178           79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS  158 (311)
Q Consensus        79 ~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~  158 (311)
                      ..+..+++|++-..     ..-+.+++.+...|.+.-...++...+ +..-+.+......|++.-.+.|+.+.|...|++
T Consensus       164 ~~ESsv~lW~KRl~-----~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~  237 (366)
T KOG2796|consen  164 AEESSIRLWRKRLG-----RVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD  237 (366)
T ss_pred             chhhHHHHHHHHHH-----HHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            45666777766443     444556666666666666677777776 555455666667777777777777777777775


Q ss_pred             cCCC----ChHHHH-----HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          159 LKTR----NLFQWN-----ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       159 m~~~----~~~~y~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      ..+.    |..+.+     .....|.-++++.+|...|.+......  -|....|.-.-+..-.|+..+|.+..+.|+..
T Consensus       238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5421    222222     223344555677777777766654111  12233333333334456777777777777665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.08  E-value=0.025  Score=42.59  Aligned_cols=71  Identities=21%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCCCchhhHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSA----STQFSNDFIIN  136 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~  136 (311)
                      ....++..+...| ++++|..+.+.+.. .+-|...|..+|.++...|+...|.++|+.+..    +.|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            3455666666778 88888888888888 666777888888888888888888888876542    35777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.27  Score=41.08  Aligned_cols=95  Identities=14%  Similarity=0.036  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhC---CChhhHHHHHHHhhhcCCCCCCc-chHH
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKN---ELYTDVLSIFVELSSDTELKPDN-FTFP  204 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~p~~-~t~~  204 (311)
                      |...|-.|-..|...|+++.|..-|.+-.   .+|...+..+..++..+   ....++..+|+++..   ..|+. .+..
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral~  231 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRALS  231 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHHH
Confidence            44455555555555555555555554432   12333333333333222   123345555555543   33332 2333


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHh
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      .|-..+...|++.+|...|+.|.+.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc
Confidence            3444455555555555555555544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.01  E-value=0.015  Score=37.44  Aligned_cols=59  Identities=14%  Similarity=0.041  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVS  124 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~  124 (311)
                      .|..+-..+.+.| ++++|+..|++..+ .+-+...|..+..++...| ++++|.+.++...
T Consensus         5 ~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3444445555555 55555555555555 3333444444555555555 4555555554443

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.12  Score=43.09  Aligned_cols=110  Identities=10%  Similarity=-0.005  Sum_probs=82.3

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH---hccCChhhHHHHHHHHHHhCCCCcHHHHH
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC---GGIADVGFGSGVHGMAAKMGLIGDVFVSN  239 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  239 (311)
                      |+..|-.|-.+|...|+++.|..-|.+..+-.|-.  ...+..+..++   ....+-.++..+++++.+.. +-|..+..
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            78889999999999999999999999986623333  33344444443   33445678899999998876 55777777


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICG  275 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~  275 (311)
                      -|-..+...|++.+|...|+.|.+  |.-..+..+|..
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            788889999999999999999986  444555555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.81  E-value=0.019  Score=37.91  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC---------CC-hHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT---------RN-LFQWNALVSGFTKNELYTDVLSIFVE  189 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~-~~~y~~li~~~~~~g~~~~a~~~~~~  189 (311)
                      +|+.+-..|...|++++|+..|++..+         ++ ..+++.+...|...|++++|.+.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444455555444444443220         11 23444444555555555555555444

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.77  E-value=0.047  Score=41.09  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHH-----hCCCCcHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAK-----MGLIGDVFV  237 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~  237 (311)
                      +...++..+...|++++|.++.+....   ..| |...|..+|.++...|+..+|.++|+.+.+     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            344455555556666666666655544   223 445566666666666666666665555432     255555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.69  E-value=0.039  Score=35.80  Aligned_cols=54  Identities=13%  Similarity=0.072  Sum_probs=26.6

Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      .|.+.+++++|.++++++..   ..|+ ...+...-..+.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44555555555555555544   2232 233444444555555555555555555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.68  E-value=0.045  Score=35.53  Aligned_cols=53  Identities=15%  Similarity=0.008  Sum_probs=40.3

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ..|.+.+ ++++|+++++.+.. .+.+...+......+...|++++|.+.++...
T Consensus         3 ~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    3 QIYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4566777 88888888888887 55566667777777778888888888888777

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.65  E-value=0.16  Score=45.04  Aligned_cols=63  Identities=10%  Similarity=-0.119  Sum_probs=51.5

Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CCCh----HHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TRNL----FQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +.+...++.+..+|.+.|++++|...|++..  +|+-    .+|..+..+|...|+.++|++.+++..+
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456788889999999999999999998854  3442    4589999999999999999999998876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.57  E-value=0.15  Score=42.55  Aligned_cols=92  Identities=5%  Similarity=-0.113  Sum_probs=73.1

Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHH
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN----LVSWNSI  272 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~y~~l  272 (311)
                      ..|...+.-..+.|++++|...|+.+.+..-...  ..++--+...|...|++++|...|+.+.+  |+    ...+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3466666655677999999999999998742211  35777888999999999999999999984  33    3455566


Q ss_pred             HHHHHhCCCcchHHHHHHhh
Q 037178          273 ICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       273 i~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...+...|+.++|.++|++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            77888999999999999998

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.55  E-value=0.49  Score=43.22  Aligned_cols=188  Identities=12%  Similarity=-0.013  Sum_probs=117.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh-----hHHHHHHHH
Q 037178           69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF-----IINTRLITM  142 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-----~~~~~ll~~  142 (311)
                      -+....+.|  +.-...+|.-+.. ++|.   +..++...+-.||-+.+.+.+.+..+..++.-..     -.|...+..
T Consensus       164 ~~d~~~~sg--v~~G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~  238 (468)
T PF10300_consen  164 PIDEFFESG--VYFGFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPS  238 (468)
T ss_pred             hhHHHHHHh--HHHHHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            455555555  4555666666666 5443   4456666777889999988888877333333221     234444444


Q ss_pred             HHh----cCChhHHHHHHHhcCC--CChHHHHHH-HHHHHhCCChhhHHHHHHHhhhcCC--CCCCcchHHHHHHHHhcc
Q 037178          143 YSL----CGFPLDSRRVFDSLKT--RNLFQWNAL-VSGFTKNELYTDVLSIFVELSSDTE--LKPDNFTFPCVIKACGGI  213 (311)
Q Consensus       143 ~~~----~g~~~~A~~l~~~m~~--~~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~t~~~li~~~~~~  213 (311)
                      ++.    ....+.|.++++.+.+  |+...|... ...+...|+.++|++.|++......  .......+--+.-.+.-.
T Consensus       239 ~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~  318 (468)
T PF10300_consen  239 FLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ  318 (468)
T ss_pred             HcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH
Confidence            443    3567788899988876  676666443 3444567899999999986543011  111233444555567778


Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHH-HHHhcCCH-------HHHHHHHhhCC
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIA-MYGKCAFV-------EEMVKLFEVMP  262 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~  262 (311)
                      +++++|.+.+..+.+.. ..+..+|.-+.. +|...|+.       ++|.++|.+..
T Consensus       319 ~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  319 HDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             chHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            89999999999888764 444555554443 34456777       88888887765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.45  E-value=0.99  Score=39.53  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=11.8

Q ss_pred             HHHHhcccCCChhHHHHHHHHHH
Q 037178          102 VLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus       102 ~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      .++-+|....+++...++.+.+.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~  168 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLE  168 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhh
Confidence            33334445555555555555555

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.17  E-value=1.5  Score=36.17  Aligned_cols=165  Identities=8%  Similarity=-0.036  Sum_probs=90.2

Q ss_pred             hcccCCChhHHHHHHHHHHhhcCCCchhhHH---HHHHHHHHhcCChhHHHHHHHhcCC--C--ChHHHHHHHHHHHh--
Q 037178          106 ACGHEKDIEIGKRVHELVSASTQFSNDFIIN---TRLITMYSLCGFPLDSRRVFDSLKT--R--NLFQWNALVSGFTK--  176 (311)
Q Consensus       106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~--~--~~~~y~~li~~~~~--  176 (311)
                      .+...|+++.|...|+.+. ..- +-+....   -.+..+|.+.|++++|...|++..+  |  .-+.|-..+.|.+.  
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~-~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALD-NRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence            3345677777777777776 322 1111221   2355666777777777777776542  2  22333333333321  


Q ss_pred             CC---------------Ch---hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178          177 NE---------------LY---TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS  238 (311)
Q Consensus       177 ~g---------------~~---~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  238 (311)
                      .+               +.   .+|+..|++                +|+-|=...-..+|...+..+...=    ...-
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~l----a~~e  178 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRL----AKYE  178 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHH----HHHH
Confidence            00               11   122222333                3333333333444444333332210    0011


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE--RNL----VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      -.+...|.+.|++..|..=|+.+.+  |+.    .....++.+|...|..++|.++...+
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1455678889999888888888875  433    35667889999999999998887766

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=3  Score=39.43  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc------CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH------NADLKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      -+.++|..+.+..-..| +++-|..+++.=..      .-.+..-+...+.-+...|+.+....++-++.
T Consensus       505 ~~~iSy~~iA~~Ay~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk  573 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK  573 (829)
T ss_pred             CCceeHHHHHHHHHhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            56678999999888999 99999998875443      22234456777888888899888888777766

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.01  E-value=0.21  Score=44.44  Aligned_cols=64  Identities=11%  Similarity=-0.060  Sum_probs=54.8

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc----hHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF----TFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +...|+.+..+|.+.|++++|+..|++..+   +.|+..    +|..+..+|...|++++|.+.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            667899999999999999999999999866   567743    5888999999999999999999988775

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.90  E-value=1.1  Score=33.25  Aligned_cols=123  Identities=11%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI  213 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~  213 (311)
                      ..++..+.+.+........++.+...   +....|.++..|++.+ ..+..+.++.       ..+.+....+++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence            35677777778888888888776533   4556788888888753 3344444432       13456666778888888


Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPERNLVSWNSIICGFSE  278 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~y~~li~~~~~  278 (311)
                      +.++++..++..+..         |...++.+... ++++.|.+.+.+-.  +...|..++..+..
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l~  137 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALLD  137 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence            877777777765422         12233333334 77888888777633  45567777766654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.73  E-value=0.54  Score=34.41  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178          238 SNALIAMYGKCAFVEEMVKLFEVMP---ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       238 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      ....++.+.+.|+-+.-.+++.++.   ++++...-.+..+|.+-|+..++.+++++.  .+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A--CekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA--CEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH--HHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH--HHhch
Confidence            3444455555555555555555543   345555555555566666666666666655  55554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=0.7  Score=43.42  Aligned_cols=120  Identities=12%  Similarity=0.038  Sum_probs=88.4

Q ss_pred             cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHH
Q 037178          127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV  206 (311)
Q Consensus       127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~l  206 (311)
                      .|..-..-+.+--+.-+...|+..+|.++-.+.+-||-..|--=+.+++..++|++-+++-+.++.       ..-|.-.
T Consensus       678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PF  750 (829)
T KOG2280|consen  678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPF  750 (829)
T ss_pred             hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhH
Confidence            343333344455566677789999999999999988888888888889999998888777655542       3446668


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +.+|.+.|+.++|.+++.+..     +.    .-.+.+|.+.|++.+|.++--+-+
T Consensus       751 Ve~c~~~~n~~EA~KYiprv~-----~l----~ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  751 VEACLKQGNKDEAKKYIPRVG-----GL----QEKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             HHHHHhcccHHHHhhhhhccC-----Ch----HHHHHHHHHhccHHHHHHHHHHhc
Confidence            889999999999998876532     11    157788899999988887665433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=1.3  Score=37.88  Aligned_cols=150  Identities=9%  Similarity=-0.104  Sum_probs=106.9

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhcCChhH
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSNDFIINTRLITMYSLCGFPLD  151 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~ll~~~~~~g~~~~  151 (311)
                      -+| ++.+|-..++++.. .+.|...+...=.+|.-.|+.+.....++.+.-+.+  ++...++-..+--++..+|.+++
T Consensus       115 ~~g-~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRG-KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccc-cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            456 88888889999988 888888899888999999999998888888872222  22223344445555668899999


Q ss_pred             HHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC--CCCcchHHHHHHHHhccCChhhHHHHHHH
Q 037178          152 SRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL--KPDNFTFPCVIKACGGIADVGFGSGVHGM  225 (311)
Q Consensus       152 A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~  225 (311)
                      |++.-++-.+   .|.-+-.+..+.+-..|++.++.+.+.+-..+-..  ..-..-|-...-.+...+.++.|.++|+.
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            9999988764   36666678888888999999999987765431110  01112233333345566899999999875

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=2.6  Score=35.40  Aligned_cols=143  Identities=7%  Similarity=-0.005  Sum_probs=92.3

Q ss_pred             HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCh
Q 037178          105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKNELY  180 (311)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~g~~  180 (311)
                      ......|+..++..+|+... ... +-+...--.|..+|...|+++.|..+++.++..    ......+-|..+.+....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al-~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQAL-QAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHH-HhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            34557788888888888877 433 223444455888888888888888888888742    122233445566666666


Q ss_pred             hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHH
Q 037178          181 TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~  253 (311)
                      .+..++-.+.-.    .| |...-..+...+...|+.+.|.+.+-.+.++.. --|...-..|++.+.-.|.-+.
T Consensus       220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            666666555544    35 445555677778888888888776665554421 3355677777777777764443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.28  E-value=0.63  Score=39.60  Aligned_cols=128  Identities=11%  Similarity=0.088  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh--c----CChhHHHHHHHhcCC-------CChHHHHHHHHHHHhCCC
Q 037178          113 IEIGKRVHELVSASTQFSNDFIINTRLITMYSL--C----GFPLDSRRVFDSLKT-------RNLFQWNALVSGFTKNEL  179 (311)
Q Consensus       113 ~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~--~----g~~~~A~~l~~~m~~-------~~~~~y~~li~~~~~~g~  179 (311)
                      ++....+++.|. +.|+..+..+|-+.......  .    ....+|.++|+.|++       ++-.++..++..  ..++
T Consensus        78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            466788889999 88998888777654333333  2    235678899999985       244566666665  3333


Q ss_pred             ----hhhHHHHHHHhhhcCCCCCCcc--hHHHHHHHHhccCC--hhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178          180 ----YTDVLSIFVELSSDTELKPDNF--TFPCVIKACGGIAD--VGFGSGVHGMAAKMGLIGDVFVSNALIAM  244 (311)
Q Consensus       180 ----~~~a~~~~~~m~~~~~~~p~~~--t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~  244 (311)
                          .+.+...|+.+.. .|+..+..  ..+.++.-+.....  +.++.++++.+.+.|+++....|..+.-.
T Consensus       155 ~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  155 VEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence                3566777888887 78876543  33333333322222  44788899999999998887777655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.28  E-value=1.6  Score=41.04  Aligned_cols=86  Identities=14%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH---------
Q 037178          199 DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW---------  269 (311)
Q Consensus       199 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y---------  269 (311)
                      |....-.+.+.+.+.|.-++|.+.+-+   .+.+      .+.+..|...+++.+|.++-+...-|-+.+.         
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll  921 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL  921 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            445555666677777777766665532   2211      2445566666677777777665553333221         


Q ss_pred             -----HHHHHHHHhCCCcchHHHHHHhhh
Q 037178          270 -----NSIICGFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       270 -----~~li~~~~~~g~~~~a~~l~~~m~  293 (311)
                           ---|.-+-+.|++-+|.+++.+|.
T Consensus       922 ~~~~~~eaIe~~Rka~~~~daarll~qma  950 (1189)
T KOG2041|consen  922 ADANHMEAIEKDRKAGRHLDAARLLSQMA  950 (1189)
T ss_pred             hhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence                 113556677888888888888883

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=2.6  Score=38.22  Aligned_cols=193  Identities=8%  Similarity=-0.022  Sum_probs=119.2

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHH-------HHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVL-------LQACGHEKDIEIGKRVHELVSASTQFSND  132 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~g~~~~  132 (311)
                      .++.-++..-.+|...| .+.+....-+...+ ..-...-|+.+       ..++.+.++.+.+...|.+.. .....||
T Consensus       255 ~~it~~~n~aA~~~e~~-~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt~~  332 (539)
T KOG0548|consen  255 TDITYLNNIAAVYLERG-KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRTPD  332 (539)
T ss_pred             hhhHHHHHHHHHHHhcc-HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcCHH
Confidence            34444677777888888 77777766665544 22223333333       335556678888888888877 4443444


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcC--CCChH-HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLK--TRNLF-QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      ..         .+....+++.+..+...  .|... ---.-...+.+.|++..|+..|.++.. .. +-|...|..-.-+
T Consensus       333 ~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-r~-P~Da~lYsNRAac  401 (539)
T KOG0548|consen  333 LL---------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-RD-PEDARLYSNRAAC  401 (539)
T ss_pred             HH---------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC-CchhHHHHHHHHH
Confidence            33         23344455555554432  23221 111225667888999999999999876 33 3357789999999


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLV  267 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  267 (311)
                      |.+.|.+..|.+=-+.-.+.. ++....|.-=..++.-..++++|++.|++..+.|..
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            999999988887666555543 223333333333444455788888888888876643

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.06  E-value=3.6  Score=37.35  Aligned_cols=176  Identities=15%  Similarity=0.070  Sum_probs=123.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      |-...-++|..+.++. .+.-+..+..+|....-+-..|..++..|... .-+.-..+|+++. +..+. |.+.-.-|..
T Consensus        65 ~d~~l~~~~~~f~~n~-k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~v-e~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNH-KNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLV-EYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccch-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHH-Hhcch-hHHHHHHHHH
Confidence            4445678888898888 88888888888888556677788888888877 5677788899888 66543 3333333555


Q ss_pred             HHHhcCChhHHHHHHHhcCCC------Ch---HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          142 MYSLCGFPLDSRRVFDSLKTR------NL---FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~~------~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      .|-+ ++.+.+...|.....+      +.   ..|.-++..  -..+.+...++..+++.+.|..--.+.+--+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            5555 8888888888775422      11   357766663  2357788888888887756666666777777778888


Q ss_pred             cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                      ..++++|.+++..+.+.. .-|.-.-..++.-+
T Consensus       218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            889999999988777665 33444444555443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.93  E-value=1.7  Score=38.71  Aligned_cols=142  Identities=11%  Similarity=0.094  Sum_probs=105.6

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+.|...|++..+.. .++.|..+|-+.++   +.+++..++++|.-++ .|+...|..+|+.-. .. ++.+..--+..
T Consensus       397 t~v~C~~~N~v~r~~-Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl-~~-f~d~~~y~~ky  472 (660)
T COG5107         397 TFVFCVHLNYVLRKR-GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL-LK-FPDSTLYKEKY  472 (660)
T ss_pred             hhHHHHHHHHHHHHh-hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH-Hh-CCCchHHHHHH
Confidence            456788888888887 79999999999888   6788888888888765 467778888888654 22 22333334567


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCC---C--hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTR---N--LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG  211 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~---~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~  211 (311)
                      +..+...++-+.|..+|+.-.++   +  ...|..+|+-=..-|+...|..+=++|..   +.|-..+..+..+-|.
T Consensus       473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~  546 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence            88888889999999999965432   2  35688999988899999999888888866   5666666555555554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.92  E-value=0.59  Score=34.17  Aligned_cols=87  Identities=20%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH---HHHHHHHHHhc
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII---NTRLITMYSLC  146 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~---~~~ll~~~~~~  146 (311)
                      .+.++.| +.+.|++.|.+... .+-....||.-..++--.|+.++|.+-+++..+-.|-. ....   |.---..|-..
T Consensus        51 valaE~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            3567888 99999999999998 77788999999999999999999999999888444422 3222   33333455666


Q ss_pred             CChhHHHHHHHhc
Q 037178          147 GFPLDSRRVFDSL  159 (311)
Q Consensus       147 g~~~~A~~l~~~m  159 (311)
                      |+.+.|..=|+..
T Consensus       129 g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  129 GNDDAARADFEAA  141 (175)
T ss_pred             CchHHHHHhHHHH
Confidence            8888887777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.92  E-value=4.1  Score=35.73  Aligned_cols=118  Identities=13%  Similarity=0.017  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcc--cCCChhHHHHHHHHHHhhcCCCchhhHHH--HHHHHHHhcCChhHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACG--HEKDIEIGKRVHELVSASTQFSNDFIINT--RLITMYSLCGFPLDSR  153 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~  153 (311)
                      +-..|.++-.+... +.-|..-+..++.+-.  -.|+.+.|.+-|+.|. .   .|......  .|.-.--+.|..+.|.
T Consensus        99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~---dPEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-D---DPETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-c---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence            45555555555444 4445554444444322  3466666666666665 2   12221111  1111112335555554


Q ss_pred             HHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178          154 RVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN  200 (311)
Q Consensus       154 ~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  200 (311)
                      ..-++--+  | -.-.+.+.+...|..|+|+.|+++.+.-++..-+.+++
T Consensus       175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~  224 (531)
T COG3898         175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV  224 (531)
T ss_pred             HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence            44443321  1 22345556666666666666666665554433344443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.77  E-value=2.4  Score=32.61  Aligned_cols=125  Identities=7%  Similarity=-0.080  Sum_probs=73.5

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHH
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS  172 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~  172 (311)
                      ++|+...+..++..+.+.|+.....    ++. ..++-+|.......+-.+.  +....+.++=-+|.++=...+..+++
T Consensus        25 i~~~~~L~~lli~lLi~~~~~~~L~----qll-q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~iie   97 (167)
T PF07035_consen   25 IPVQHELYELLIDLLIRNGQFSQLH----QLL-QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEIIE   97 (167)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHH----HHH-hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHHHH
Confidence            6677778888888888887765533    333 4454555444443332222  22233333333333332335667777


Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      .+...|++-+|.+.......     -+......++++..+.+|...-..+++...++
T Consensus        98 vLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   98 VLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             HHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888776532     23334466777777777777666666666554

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.75  E-value=0.062  Score=40.24  Aligned_cols=55  Identities=15%  Similarity=0.044  Sum_probs=32.9

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +|+.+.+.+..+...++++.+.+.+...+....+.++..|++.++.++.+++++.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~   67 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT   67 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence            4555555666666666666666555455566666666666666666666666653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.72  E-value=2  Score=38.31  Aligned_cols=125  Identities=11%  Similarity=0.115  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTE-LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .+|...|..-.+..-.+.|..+|.+..+ .| +.++++.++++|..++. |+...|..+|+.=... ++-+..--+..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence            4577888888888889999999999988 77 77889999999998775 6777888888753322 2333444456777


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          244 MYGKCAFVEEMVKLFEVMPE---RN--LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~---~~--~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      -+.+-++-+.|..+|+...+   .+  ..+|-.+|.--..-|+...|..+=++|
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf  528 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF  528 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence            77888999999999996654   23  357888888888888887776665555

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.68  E-value=1.5  Score=39.61  Aligned_cols=158  Identities=16%  Similarity=0.054  Sum_probs=101.9

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      ..-.++++.+.++.+.-.--..++  ..-.+.++..+-+.|..+.|+++-.+-        ..-.+...+.|+.+.|.++
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~  340 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEI  340 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHH
Confidence            345677777666665211011222  445788999999999999999886542        2233344678999999887


Q ss_pred             HHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 037178          187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL  266 (311)
Q Consensus       187 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  266 (311)
                      -++.       .+...|..|-+...+.|+++-|++.+.+..+         +..|+-.|.-.|+.+.-.++.+...+.+.
T Consensus       341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            5433       3667999999999999999999999987543         45788888889998888777766554322


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                        +|....++.-.|+.++..+++.+-
T Consensus       405 --~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 --INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             --HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHc
Confidence              556666667778888887777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.66  E-value=0.6  Score=38.55  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC--C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT--R----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVI  207 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~--~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li  207 (311)
                      .|+.-+.. .+.|++.+|...|....+  |    ....+-=|..++...|++++|..+|..+.++.+-.|-. ..+.-|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            46544443 344556666666665543  1    11233335566666666666666666665534333332 4555555


Q ss_pred             HHHhccCChhhHHHHHHHHHHh
Q 037178          208 KACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6666666666666666666655

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=0.7  Score=39.01  Aligned_cols=105  Identities=9%  Similarity=-0.078  Sum_probs=80.6

Q ss_pred             hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc
Q 037178           53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-----NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST  127 (311)
Q Consensus        53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  127 (311)
                      .-|......++.+-..++..-.... +++.+...+-+++.     ..++ .+-.++++.|.+. +++++..++..=+ ..
T Consensus        54 kkF~~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllky-~pq~~i~~l~npI-qY  129 (418)
T KOG4570|consen   54 KKFERGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLKY-DPQKAIYTLVNPI-QY  129 (418)
T ss_pred             hhhhcCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHcc-ChHHHHHHHhCcc-hh
Confidence            4456666667777788888777788 89999999888876     2333 2334455555443 5678888888888 89


Q ss_pred             CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 037178          128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT  161 (311)
Q Consensus       128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~  161 (311)
                      |+-||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus       130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            9999999999999999999999999988777653

>PRK15331 chaperone protein SicA; Provisional

Probab=93.47  E-value=0.37  Score=36.73  Aligned_cols=83  Identities=13%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH
Q 037178           74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS  152 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A  152 (311)
                      -..| ++++|..+|+-+.. ..-+..-|..+..++-..+.+++|...|.... ..+. -|...+-..-.+|...|+.+.|
T Consensus        48 y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~~-~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         48 YNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLLK-NDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hccc-CCCCccchHHHHHHHhCCHHHH
Confidence            3445 55555555555444 22233333333334444455555555555444 3321 2222222244555555555555


Q ss_pred             HHHHHhc
Q 037178          153 RRVFDSL  159 (311)
Q Consensus       153 ~~l~~~m  159 (311)
                      +..|+..
T Consensus       125 ~~~f~~a  131 (165)
T PRK15331        125 RQCFELV  131 (165)
T ss_pred             HHHHHHH
Confidence            5555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.38  E-value=5.2  Score=35.18  Aligned_cols=187  Identities=10%  Similarity=-0.002  Sum_probs=102.5

Q ss_pred             hcCCCCCcccHH---HHHHHHHhcCCCHHHHHHHHHhhccC-CC----ChhhHHHHHHhccc---CCChhHHHHHHHHHH
Q 037178           56 TNNASTQGLHFL---QEITTLCEESKSLNKALSLLQENLHN-AD----LKEATGVLLQACGH---EKDIEIGKRVHELVS  124 (311)
Q Consensus        56 ~~~~~~~~~~~~---~li~~~~~~g~~~~~a~~~~~~m~~~-~~----~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~  124 (311)
                      .++..|...+=.   .++-.|-... +++..+++++.+... ..    ....--...-++-+   .|+.++|.+++..+.
T Consensus       131 ~rLd~~~~ls~div~~lllSyRdiq-dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l  209 (374)
T PF13281_consen  131 QRLDDPELLSPDIVINLLLSYRDIQ-DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL  209 (374)
T ss_pred             HhhCCHhhcChhHHHHHHHHhhhhh-hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence            344444444433   3444677788 999999999999882 11    11111223344456   899999999999966


Q ss_pred             hhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--
Q 037178          125 ASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--  202 (311)
Q Consensus       125 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--  202 (311)
                       ...-.++..+|..+...|-..         |.+-...|..             ..++|+..|.+--+   +.||.++  
T Consensus       210 -~~~~~~~~d~~gL~GRIyKD~---------~~~s~~~d~~-------------~ldkAi~~Y~kgFe---~~~~~Y~GI  263 (374)
T PF13281_consen  210 -ESDENPDPDTLGLLGRIYKDL---------FLESNFTDRE-------------SLDKAIEWYRKGFE---IEPDYYSGI  263 (374)
T ss_pred             -hccCCCChHHHHHHHHHHHHH---------HHHcCccchH-------------HHHHHHHHHHHHHc---CCccccchH
Confidence             445567777887777666432         1111111111             15666666665533   3455443  


Q ss_pred             -HHHHHHHHhccC-ChhhHHHHH----HHHHHhCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 037178          203 -FPCVIKACGGIA-DVGFGSGVH----GMAAKMGL---IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW  269 (311)
Q Consensus       203 -~~~li~~~~~~g-~~~~a~~~~----~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y  269 (311)
                       +.+|+....... .-.+..++.    ..+.+.|.   ..+--.+.++++++.-.|+.++|.+..++|...+...|
T Consensus       264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence             333333332211 111222222    22223332   22444556777777778888888888888776544444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.28  E-value=1.5  Score=34.26  Aligned_cols=94  Identities=14%  Similarity=-0.023  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCC---CCc----HH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGL---IGD----VF  236 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~----~~  236 (311)
                      .+..+..-|++.|+.++|.+.|.++.. ....+..  ..+..+|+.....|++..+.....+....--   .++    ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345555555555555555555555554 4333332  2344555555555565555555544432211   111    22


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +|..+..  ...|++.+|-+.|-+..
T Consensus       117 ~~~gL~~--l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLAN--LAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHH--HHhchHHHHHHHHHccC
Confidence            3333332  34678888888887765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.05  E-value=3.1  Score=38.05  Aligned_cols=153  Identities=12%  Similarity=0.013  Sum_probs=106.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC-CCh---------HHHHHHHHHHHhC----CChhhHHHHHHHhhhcCCCCCCcch
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT-RNL---------FQWNALVSGFTKN----ELYTDVLSIFVELSSDTELKPDNFT  202 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~-~~~---------~~y~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~t  202 (311)
                      ..+++..+=.|+-+.+++++.+-.+ .++         ..|..++..++..    ...+.|.++++++.+   .-|+..-
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~yP~s~l  268 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RYPNSAL  268 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hCCCcHH
Confidence            3466666777899999888877553 222         3577777766654    567889999999976   5688776


Q ss_pred             HHHHH-HHHhccCChhhHHHHHHHHHHhC--C-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHH-H
Q 037178          203 FPCVI-KACGGIADVGFGSGVHGMAAKMG--L-IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSII-C  274 (311)
Q Consensus       203 ~~~li-~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li-~  274 (311)
                      |...- +.+...|++++|.+.++......  . +.....+--+.-.++-.+++++|.+.|..+.+-+   ..+|.=+. .
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            65443 44678899999999999765321  1 2234555556667888999999999999999632   23333332 3


Q ss_pred             HHHhCCCc-------chHHHHHHhh
Q 037178          275 GFSENGFS-------CESFDLLIKM  292 (311)
Q Consensus       275 ~~~~~g~~-------~~a~~l~~~m  292 (311)
                      ++...|+.       ++|.++|.+.
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHH
Confidence            44557777       8888888876

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.01  E-value=0.7  Score=38.70  Aligned_cols=77  Identities=12%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhh----cCCCCCCcchHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSS----DTELKPDNFTFPC  205 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~t~~~  205 (311)
                      ..++..++..+..+|+.+.+.+.++++.+  | +...|..+|.+|.++|+...|++.|+++..    +.|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34566677777777878877777777653  2 667788888888888888888877777644    2466665555544


Q ss_pred             HHHH
Q 037178          206 VIKA  209 (311)
Q Consensus       206 li~~  209 (311)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.01  E-value=1.6  Score=37.21  Aligned_cols=163  Identities=11%  Similarity=0.066  Sum_probs=93.9

Q ss_pred             cccHHHHHHHHHh-cCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhccc--CC----ChhHHHHHHHHHHhhcCC--Cc
Q 037178           63 GLHFLQEITTLCE-ESKSLNKALSLLQENLH--NADLKEATGVLLQACGH--EK----DIEIGKRVHELVSASTQF--SN  131 (311)
Q Consensus        63 ~~~~~~li~~~~~-~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~g~--~~  131 (311)
                      ..++.+++..... -...+++.+.+++.|.+  .+-+..+|.+..-....  ..    ...++.++|+.|++.+.+  .+
T Consensus        60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~  139 (297)
T PF13170_consen   60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP  139 (297)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence            3444555544443 11135567777888887  66666777664333322  22    356799999999954443  45


Q ss_pred             hhhHHHHHHHHHHhcCCh----hHHHHHHHhcCC-----CChHHHHHHHHHHHhCCC---hhhHHHHHHHhhhcCCCCCC
Q 037178          132 DFIINTRLITMYSLCGFP----LDSRRVFDSLKT-----RNLFQWNALVSGFTKNEL---YTDVLSIFVELSSDTELKPD  199 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~----~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~p~  199 (311)
                      +-..+..|+..  ..++.    +.++.+|+.+.+     .|..-+.+-|-++.....   ...+.++++.+++ .|+++.
T Consensus       140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik  216 (297)
T PF13170_consen  140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIK  216 (297)
T ss_pred             cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccc
Confidence            66677777655  33333    445666666543     344444444444443322   4578899999999 999998


Q ss_pred             cchHHHHHHHH-hccCC---hhhHHHHHHHHHH
Q 037178          200 NFTFPCVIKAC-GGIAD---VGFGSGVHGMAAK  228 (311)
Q Consensus       200 ~~t~~~li~~~-~~~g~---~~~a~~~~~~m~~  228 (311)
                      ...|..+--.. ...+.   ++...++.+.+.+
T Consensus       217 ~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~  249 (297)
T PF13170_consen  217 YMHYPTLGLLALLEDPEEKIVEEIKEVIDELKE  249 (297)
T ss_pred             cccccHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            88776553322 22222   3444455555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.91  E-value=5.1  Score=33.75  Aligned_cols=149  Identities=10%  Similarity=-0.092  Sum_probs=105.8

Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      -.......|++.+|..+|+...+   .+...--.++.+|...|+++.|..++..+.. .--.........-|..+.+...
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHhc
Confidence            34456778999999999988653   3556677889999999999999999999865 2222222333344555666666


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-----NLVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      ..+...+..+.-..  +-|...--.+...|...|+.++|.+.+-.+..+     |-..-..|+..+---|..|.+...++
T Consensus       219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R  296 (304)
T COG3118         219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR  296 (304)
T ss_pred             CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            66666665555433  347788888999999999999999988877753     45667778887777776555444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.73  E-value=1.2  Score=33.13  Aligned_cols=70  Identities=13%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             HHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178          143 YSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI  213 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~  213 (311)
                      ..+.|++++|.+.|+.+..+      ...+--.++.+|.+.|++++|...+++..+-....| .+-|...+.|++.-
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHH
Confidence            34557777777777777642      334455677777778888888877777765122222 24555556655443

>PRK15331 chaperone protein SicA; Provisional

Probab=92.66  E-value=0.62  Score=35.55  Aligned_cols=91  Identities=11%  Similarity=-0.088  Sum_probs=66.3

Q ss_pred             HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178          169 ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK  247 (311)
Q Consensus       169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  247 (311)
                      ...--+...|++++|..+|.-+..   ..|. ..-+..|-.++-..+++++|...|......+ .-|...+--...+|..
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~  117 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence            344456778999999999998876   3333 3334566666777889999999998776554 2344455566788889


Q ss_pred             cCCHHHHHHHHhhCCC
Q 037178          248 CAFVEEMVKLFEVMPE  263 (311)
Q Consensus       248 ~g~~~~A~~~~~~m~~  263 (311)
                      .|+.+.|+..|+...+
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            9999999998887665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.45  E-value=0.36  Score=27.80  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=22.0

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATG  101 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~  101 (311)
                      .|..+-.+|.+.| ++++|.++|++..+ .+-|...+.
T Consensus         3 ~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~   39 (44)
T PF13428_consen    3 AWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHH
Confidence            3555666677777 77777777777766 433444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.34  E-value=0.8  Score=38.68  Aligned_cols=102  Identities=13%  Similarity=0.049  Sum_probs=70.5

Q ss_pred             cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-CCh-----HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178          127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RNL-----FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN  200 (311)
Q Consensus       127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~~-----~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  200 (311)
                      .|.+....+...++..-....+.+++...+-+++. ++.     .+-.+++.-+. .-++.+++.+...=.+ .|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence            34455555555555555556677777777666653 211     11122333333 3477799999888888 9999999


Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      +|++.+|+.+.+.+++.+|..+.-.|....
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999999998888877654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.29  E-value=4.4  Score=40.49  Aligned_cols=19  Identities=21%  Similarity=0.148  Sum_probs=8.7

Q ss_pred             HHHHhcCCHHHHHHHHhhC
Q 037178          243 AMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m  261 (311)
                      ..|++...+++|.++...-
T Consensus      1034 ~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHhhHhHHHHHHHHHHhc
Confidence            3344444455555544433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.27  E-value=8.7  Score=34.90  Aligned_cols=163  Identities=10%  Similarity=0.009  Sum_probs=88.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      .+|...=+.. +...-++.-++..++.||-.+.-+++ +--....+.++.+++++.. +.|-    ..+.   .......
T Consensus       173 ~IMq~AWRER-np~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAv-kAgE----~~lg---~s~~~~~  242 (539)
T PF04184_consen  173 EIMQKAWRER-NPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAV-KAGE----ASLG---KSQFLQH  242 (539)
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHH-HHHH----Hhhc---hhhhhhc
Confidence            3344444555 67777777777777556543322222 2223455788888888887 4431    1100   0000000


Q ss_pred             ChhHHHHHHHhcCCCC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178          148 FPLDSRRVFDSLKTRN----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       148 ~~~~A~~l~~~m~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~  223 (311)
                      .    -..++.+..++    ...-.-+..+.-+.|+.++|++.|.+|.++....-+....-.|+.++...+.+.++..++
T Consensus       243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            0    01111122222    222234556666788889999998888651221122346668888888888888888888


Q ss_pred             HHHHHhCCC-CcHHHHHHHHHH
Q 037178          224 GMAAKMGLI-GDVFVSNALIAM  244 (311)
Q Consensus       224 ~~m~~~g~~-~~~~~~~~li~~  244 (311)
                      .+-.+...+ .-...|+..+--
T Consensus       319 ~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  319 AKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHhccccCCchHHHHHHHHHHH
Confidence            876443322 235667765543

The molecular function of this protein is uncertain.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.14  E-value=1.6  Score=36.09  Aligned_cols=93  Identities=11%  Similarity=-0.039  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc----CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH----NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLI  140 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll  140 (311)
                      |+.-+..+ ..| ++..|...|.....    ..-....+-.|..++...|+.+.|..+|..+....+-.|. ....-.|.
T Consensus       145 Y~~A~~~~-ksg-dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         145 YNAALDLY-KSG-DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HcC-CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            55544433 555 56666666666555    1112233444555666666666666666666533222222 23444455


Q ss_pred             HHHHhcCChhHHHHHHHhcC
Q 037178          141 TMYSLCGFPLDSRRVFDSLK  160 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~  160 (311)
                      .+..+.|+.++|..+|++..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHH
Confidence            55555566666666555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.14  E-value=2.3  Score=32.84  Aligned_cols=119  Identities=12%  Similarity=-0.047  Sum_probs=74.5

Q ss_pred             HhcCChhHHHHHHHhcCCCChHHHHHH-----HHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHH--HHhccCC
Q 037178          144 SLCGFPLDSRRVFDSLKTRNLFQWNAL-----VSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIK--ACGGIAD  215 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~~~~~~y~~l-----i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~--~~~~~g~  215 (311)
                      ++.+..++|+.-|.++.+.+--.|-.|     .......|+..+|...|.+.-. ..-.|-.. -..-|=.  .+...|.
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHhcccc
Confidence            455677777777777776544444333     2344567888888888888866 33333222 1112222  2356777


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +++...-.+-+-..|-+.-...-.+|--+-.+.|++.+|.+.|..+.+
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            777777776666555455555666677777788888888888887764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.07  E-value=1.5  Score=39.09  Aligned_cols=134  Identities=6%  Similarity=0.000  Sum_probs=83.8

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhh------HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEA------TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      +.+ ++.+|..+|.+... ...+...      -+.+++++. ..+++..........+..|-.+-...+-.|+  +.+.+
T Consensus        18 kq~-~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k   93 (549)
T PF07079_consen   18 KQK-KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQK   93 (549)
T ss_pred             HHh-hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhh
Confidence            446 89999999998877 4344333      245566654 4556666666666663444333333333222  24668


Q ss_pred             ChhHHHHHHHhcCCC------------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC----CCCCcchHHH
Q 037178          148 FPLDSRRVFDSLKTR------------------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTE----LKPDNFTFPC  205 (311)
Q Consensus       148 ~~~~A~~l~~~m~~~------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~t~~~  205 (311)
                      ++++|.+.|....+.                  |...=+..++++.+.|++.++..++++|.. .=    ..-+..+|+.
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~-~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE-RLLKRECEWNSDMYDR  172 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhhhhhcccHHHHHH
Confidence            888888887665421                  122236677888888888888888888765 32    3367778877


Q ss_pred             HHHHHhcc
Q 037178          206 VIKACGGI  213 (311)
Q Consensus       206 li~~~~~~  213 (311)
                      ++-.+++.
T Consensus       173 ~vlmlsrS  180 (549)
T PF07079_consen  173 AVLMLSRS  180 (549)
T ss_pred             HHHHHhHH
Confidence            76666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.01  E-value=3.8  Score=30.18  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=27.7

Q ss_pred             HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178          168 NALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  231 (311)
                      +..++...+.|+-+.-.+++.++..  +-.++....-.+..||.+.|+..++.+++.+..+.|+
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3344445555555555555555432  2234444444555555555555555555555555553

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.89  E-value=4.5  Score=30.82  Aligned_cols=104  Identities=18%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             HhcCChhHHHHHHHhcC--CC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178          144 SLCGFPLDSRRVFDSLK--TR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~--~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~  218 (311)
                      .+.++.++++.+++.+.  .|   ...++..++  +...|++.+|.++|+++.. .  .|.. -|..-+-++|-...-+.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~-~--~~~~-p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE-R--APGF-PYAKALLALCLYALGDP   94 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc-c--CCCC-hHHHHHHHHHHHHcCCh
Confidence            45578888888888765  34   333444444  4578899999999998865 2  2333 33333334433333333


Q ss_pred             HHHHH-HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178          219 GSGVH-GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK  256 (311)
Q Consensus       219 a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  256 (311)
                      .++.+ +++.+.+-.|+.   ..++..+.+..+...|..
T Consensus        95 ~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   95 SWRRYADEVLESGADPDA---RALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence            34333 445555534333   455555555555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.80  E-value=0.33  Score=26.58  Aligned_cols=23  Identities=13%  Similarity=0.242  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVE  189 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~  189 (311)
                      |+.|...|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45556666666666666666655

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.77  E-value=1.7  Score=38.72  Aligned_cols=166  Identities=11%  Similarity=0.102  Sum_probs=98.0

Q ss_pred             cCCChhHHHHHHHHHHhhcCCCc---h-hhHHHHHHHHHHhcCChhHHHHHHHhcCCC-ChHHHHHHHHHH--HhCCChh
Q 037178          109 HEKDIEIGKRVHELVSASTQFSN---D-FIINTRLITMYSLCGFPLDSRRVFDSLKTR-NLFQWNALVSGF--TKNELYT  181 (311)
Q Consensus       109 ~~~~~~~a~~~~~~m~~~~g~~~---~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~~y~~li~~~--~~~g~~~  181 (311)
                      +.++++++..+|..+.++..-.|   . ....+.++++|.. ++++.....+....+. ....|-.+..+.  .+.|.++
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~   96 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR   96 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence            56788999999888873322122   1 3455677788775 3455555555444432 233455554443  4678889


Q ss_pred             hHHHHHHHhhhc-CCCCC------------CcchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCcHHHHHHHHHH
Q 037178          182 DVLSIFVELSSD-TELKP------------DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIGDVFVSNALIAM  244 (311)
Q Consensus       182 ~a~~~~~~m~~~-~~~~p------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~  244 (311)
                      +|.+.+..-... .+-.|            |-.-=++.++++.+.|++.+++.+++++...=    ...+..+|+-++-+
T Consensus        97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm  176 (549)
T PF07079_consen   97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM  176 (549)
T ss_pred             HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence            888887666541 12222            11122355667789999999999888877553    44889999998888


Q ss_pred             HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 037178          245 YGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSEN  279 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~  279 (311)
                      +++.=-+|    +-+.+...=..-|--||..|.+.
T Consensus       177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kk  207 (549)
T PF07079_consen  177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKK  207 (549)
T ss_pred             HhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence            87642221    11122221223466667777654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.54  E-value=8.1  Score=36.26  Aligned_cols=89  Identities=10%  Similarity=0.016  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcH------
Q 037178          162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV------  235 (311)
Q Consensus       162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------  235 (311)
                      .+..+...+...+.+...+.-|-++|..|-.          ...+++.....+++++|..+-+..-+.  .+|+      
T Consensus       745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaq  812 (1081)
T KOG1538|consen  745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQ  812 (1081)
T ss_pred             hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHH
Confidence            3445555555666666778888888888865          346778888889999998876654322  2222      


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          236 -----FVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       236 -----~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                           .-+.-.-.+|-|+|+-.||.++++++.
T Consensus       813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence                 122233356677777777777777765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.36  E-value=0.39  Score=26.26  Aligned_cols=23  Identities=9%  Similarity=0.073  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHh
Q 037178          269 WNSIICGFSENGFSCESFDLLIK  291 (311)
Q Consensus       269 y~~li~~~~~~g~~~~a~~l~~~  291 (311)
                      |+.|-..|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444555555555555555554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.24  E-value=7.3  Score=31.98  Aligned_cols=199  Identities=11%  Similarity=0.043  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |.---.+|-.+. ++++|..-+.+..+ ...+...|+.       ....+.|.-+.+++. +.  +--+..|+.-...|.
T Consensus        34 yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~-kl--sEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   34 YEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELS-KL--SEVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHH-Hh--HHHHHHHHHHHHHHH
Confidence            555555666666 77777776666554 3233333322       233455556666665 32  233456777778888


Q ss_pred             hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc----CCCCCCcchHHHHHHHHhccCChhhHH
Q 037178          145 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD----TELKPDNFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~~a~  220 (311)
                      .+|..+.|-..+++.-+            ..++-++++|+++|++-...    ...+.-..-|..+-..+.+...+++|-
T Consensus       103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence            88887777666655321            12334566666666554320    001111123455555667777777766


Q ss_pred             HHHHHHHHh----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhCCCcchHHHH
Q 037178          221 GVHGMAAKM----GLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE-------RNLVSWNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       221 ~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~y~~li~~~~~~g~~~~a~~l  288 (311)
                      ..+..-...    .-.++ -..|-+.|-.|.-..++..|.+.+++-.+       .+..+...|+.+|- .|+.+.+.++
T Consensus       171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv  249 (308)
T KOG1585|consen  171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV  249 (308)
T ss_pred             HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence            555332211    11122 23455666667777899999999998443       35567788888874 4555655554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=9.1  Score=32.99  Aligned_cols=144  Identities=8%  Similarity=-0.056  Sum_probs=73.3

Q ss_pred             hcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHH--HHHHHHhccCChh
Q 037178          145 LCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFP--CVIKACGGIADVG  217 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~--~li~~~~~~g~~~  217 (311)
                      ..|+..+|...++++.+   .|..+++--=.+|.-.|+...-...++++.- . -.||.  ++|.  ...-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-K-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-c-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            34555666555555543   2555666666666666666666666665543 1 12222  2222  2222334556666


Q ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C---hhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER----N---LVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~---~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      +|++.-++..+-+ +.|.-...+....+-..|++.++.+...+-.+.    +   ..-|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            6666655555444 345555555555556666666666655554431    0   1122223334445566666666665


Q ss_pred             h
Q 037178          291 K  291 (311)
Q Consensus       291 ~  291 (311)
                      .
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            4

>PRK11906 transcriptional regulator; Provisional

Probab=91.15  E-value=11  Score=33.93  Aligned_cols=125  Identities=15%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             ccH--HHHHHHHHhcC----CCHHHHHHHHHhhc---cCCCC-hhhHHHHHHhcc---------cCCChhHHHHHHHHHH
Q 037178           64 LHF--LQEITTLCEES----KSLNKALSLLQENL---HNADL-KEATGVLLQACG---------HEKDIEIGKRVHELVS  124 (311)
Q Consensus        64 ~~~--~~li~~~~~~g----~~~~~a~~~~~~m~---~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~  124 (311)
                      ..|  ...+++..+..    -..+.|+.+|.+..   +..|+ ...|..+.-++.         ...+..+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  66666655421    03456777777777   34443 223322221111         1223344555555555


Q ss_pred             hhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          125 ASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TRN-LFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       125 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                       +.+ +-|......+-.+..-.|+++.|..+|++-.  .|| ..+|........-+|+.++|.+.+++.
T Consensus       332 -eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        332 -DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             -hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             444 3445555555555555566666666666543  332 233444444444556666666666663

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.14  E-value=10  Score=33.42  Aligned_cols=148  Identities=13%  Similarity=0.021  Sum_probs=89.2

Q ss_pred             HHhcCCCHHHHHHHHHhhccCCCChhhHHHHHH----hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           73 LCEESKSLNKALSLLQENLHNADLKEATGVLLQ----ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      -.-.| +.+.|.+-|+.|..   |++|-..=++    ..-+.|+.+.|.++-+..- ..- +--...+.+++...|..|+
T Consensus       130 al~eG-~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa-~~A-p~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         130 ALLEG-DYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAA-EKA-PQLPWAARATLEARCAAGD  203 (531)
T ss_pred             HHhcC-chHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH-hhc-cCCchHHHHHHHHHHhcCC
Confidence            34568 99999999999997   6665433333    3457899999999888876 221 2345678889999999999


Q ss_pred             hhHHHHHHHhcC-----CCChHH--HHHHHHHHHh---CCChhhHHHHHHHhhhcCCCCCCcch-HHHHHHHHhccCChh
Q 037178          149 PLDSRRVFDSLK-----TRNLFQ--WNALVSGFTK---NELYTDVLSIFVELSSDTELKPDNFT-FPCVIKACGGIADVG  217 (311)
Q Consensus       149 ~~~A~~l~~~m~-----~~~~~~--y~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~t-~~~li~~~~~~g~~~  217 (311)
                      |+.|+++.+.-+     ++|+.-  -..|+.+-..   ..+...|.+.-.+-   ..+.||.+- -..-..++.+.|++.
T Consensus       204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~r  280 (531)
T COG3898         204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLR  280 (531)
T ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchh
Confidence            999999998754     333321  1122222111   11233333333222   234455432 223344556666666


Q ss_pred             hHHHHHHHHHHh
Q 037178          218 FGSGVHGMAAKM  229 (311)
Q Consensus       218 ~a~~~~~~m~~~  229 (311)
                      ++-.+++.+-+.
T Consensus       281 Kg~~ilE~aWK~  292 (531)
T COG3898         281 KGSKILETAWKA  292 (531)
T ss_pred             hhhhHHHHHHhc
Confidence            666666665554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.06  E-value=0.92  Score=26.02  Aligned_cols=18  Identities=11%  Similarity=-0.038  Sum_probs=6.6

Q ss_pred             HHhccCChhhHHHHHHHH
Q 037178          209 ACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m  226 (311)
                      ++...|++++|.+++++.
T Consensus        10 ~~~~~G~~~~A~~~~~~~   27 (44)
T PF13428_consen   10 AYRRLGQPDEAERLLRRA   27 (44)
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            333333333333333333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=2.9  Score=36.67  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=77.7

Q ss_pred             HHHHHhcCChhHHHHHHHhcCC------------------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCc
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT------------------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDN  200 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~------------------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~  200 (311)
                      -+.|.+.|++..|..-|++...                  .-+.+++.+..++.+.+++.+|++.-.+...   .. +|.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~  291 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNV  291 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCch
Confidence            3567788888888888776321                  0224577788888888888888888777654   33 345


Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHhhCC
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM-VKLFEVMP  262 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  262 (311)
                      ...----.++...|+++.|+..|+.+.+.. +-|-.+-+-|+.+--+..+..+. .++|..|-
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555556677788888888888888887764 33455555555554444444333 55666554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=5.8  Score=35.04  Aligned_cols=227  Identities=10%  Similarity=-0.080  Sum_probs=132.8

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHH---------------h
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVS---------------A  125 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~---------------~  125 (311)
                      ++.-|..-...+...| ++++|+--.++-.+++|. .......-+++...++..+|.+.++.-.               .
T Consensus        82 ~a~yy~nRAa~~m~~~-~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~  160 (486)
T KOG0550|consen   82 NASYYSNRAATLMMLG-RFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAP  160 (486)
T ss_pred             chhhhchhHHHHHHHH-hHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccc
Confidence            3444666666677777 788777777666663222 3344444555555555555554443211               0


Q ss_pred             hcCCCchhhHHHHHH-HHHHhcCChhHHHHHHHhcCCCC-hHHHHHHHHHH--HhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178          126 STQFSNDFIINTRLI-TMYSLCGFPLDSRRVFDSLKTRN-LFQWNALVSGF--TKNELYTDVLSIFVELSSDTELKPDNF  201 (311)
Q Consensus       126 ~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~l~~~m~~~~-~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~p~~~  201 (311)
                      ..--+|...++-.|- .++.-.|+.++|.+.--...+-| .-.+...+.+.  .-.++.+.|...|++-..   ..|+..
T Consensus       161 s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~  237 (486)
T KOG0550|consen  161 SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQ  237 (486)
T ss_pred             cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhh
Confidence            011123334443222 33445577787777655544322 22333333333  345677788888877654   556544


Q ss_pred             hHHHH---HH----------HHhccCChhhHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 037178          202 TFPCV---IK----------ACGGIADVGFGSGVHGMAAKM---GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN  265 (311)
Q Consensus       202 t~~~l---i~----------~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  265 (311)
                      .-...   .+          -..+.|.+.+|.+.+.+.+..   ..+++...|........+.|+.++|..--++..+-|
T Consensus       238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence            32222   22          235788899999998887654   356677788888888889999999998888888766


Q ss_pred             hh---hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          266 LV---SWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       266 ~~---~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..   .|-.-..++.-.++|++|.+-++..
T Consensus       318 ~syikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53   3333334555567777777777665

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.91  E-value=1.8  Score=36.26  Aligned_cols=59  Identities=19%  Similarity=0.062  Sum_probs=28.1

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL  159 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m  159 (311)
                      ++..++..+...|+.+.+...++++. ... +-+...|..+|.+|.+.|+...|...|+++
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li-~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLI-ELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            34444444444455555555555444 222 334444555555555555555555555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.86  E-value=9  Score=32.33  Aligned_cols=213  Identities=9%  Similarity=0.017  Sum_probs=122.9

Q ss_pred             HhcCCCHHHHHHHHHhhcc-C-CCChhh--------HHHHHHhcccCC-ChhHHHHHHHHHHhhc--------CCCch--
Q 037178           74 CEESKSLNKALSLLQENLH-N-ADLKEA--------TGVLLQACGHEK-DIEIGKRVHELVSAST--------QFSND--  132 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~~-~-~~~~~~--------~~~ll~~~~~~~-~~~~a~~~~~~m~~~~--------g~~~~--  132 (311)
                      .+.| +++.|..++.+... . ..++..        |+.-...+ ..+ +++.|...+++.. +.        ...++  
T Consensus         4 ~~~~-~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~-~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen    4 WKQG-DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAY-DILEKPGKMDKLSPDGS   80 (278)
T ss_pred             hhhC-CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHH-HHHHhhhhccccCCcHH
Confidence            3567 89999999998887 2 333332        33333333 344 7777766666544 22        12222  


Q ss_pred             ---hhHHHHHHHHHHhcCChhH---HHHHHHhcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          133 ---FIINTRLITMYSLCGFPLD---SRRVFDSLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       133 ---~~~~~~ll~~~~~~g~~~~---A~~l~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                         ..+...|+.+|...+..+.   |.++++.+..  ++ ...+---+..+.+.++.+++.+++.+|.. . +.-....+
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~-~-~~~~e~~~  158 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR-S-VDHSESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH-h-cccccchH
Confidence               3467788888888877654   5555555542  23 44555666777778999999999999986 2 33244556


Q ss_pred             HHHHHHHhcc--CChhhHHHHHHHHHHhCCCCcHH--HHHHHHHHH---Hhc------CCHHHHHHHHhhCCC-----CC
Q 037178          204 PCVIKACGGI--ADVGFGSGVHGMAAKMGLIGDVF--VSNALIAMY---GKC------AFVEEMVKLFEVMPE-----RN  265 (311)
Q Consensus       204 ~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~---~~~------g~~~~A~~~~~~m~~-----~~  265 (311)
                      ..+++.....  .....+...++.+....+.|...  .=..++...   .+.      ++++...++++...+     -+
T Consensus       159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls  238 (278)
T PF08631_consen  159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS  238 (278)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence            6666655222  23456667777776665665543  111111111   111      125555555653321     12


Q ss_pred             h--------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          266 L--------VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       266 ~--------~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .        ..|+. ...+.+.++++.|.++|+--
T Consensus       239 ~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  239 AEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHH
Confidence            1        23443 35567789999999999753

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.81  E-value=13  Score=33.92  Aligned_cols=78  Identities=5%  Similarity=-0.035  Sum_probs=59.8

Q ss_pred             CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---C--ChhhHHH
Q 037178          198 PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---R--NLVSWNS  271 (311)
Q Consensus       198 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~~~y~~  271 (311)
                      |-.++-.-+..++-+.|+.++|.+.+.+|.+..-. -+..+...|+.++...+.+.++..++.+-.+   |  -...|+.
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            33444456777888999999999999999876422 2456888999999999999999999998764   2  2357877


Q ss_pred             HHHH
Q 037178          272 IICG  275 (311)
Q Consensus       272 li~~  275 (311)
                      .+--
T Consensus       337 ALLk  340 (539)
T PF04184_consen  337 ALLK  340 (539)
T ss_pred             HHHH
Confidence            5543

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.78  E-value=9.2  Score=38.37  Aligned_cols=111  Identities=9%  Similarity=0.006  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG  246 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  246 (311)
                      |.+....+...+.+++|.-.|+...+          .--.+.+|-..|++.+|..+..++.... .--..+--.|+.-+.
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLV 1010 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Confidence            33344444455666666666655433          2235566666777777766665543211 001122245666666


Q ss_pred             hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          247 KCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       247 ~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..|+.-+|-++..+-...    +.-.+.-||+...+++|.++...-
T Consensus      1011 e~~kh~eAa~il~e~~sd----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HcccchhHHHHHHHHhcC----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            677777777666665431    233455666777777777766544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.73  E-value=5.7  Score=30.27  Aligned_cols=72  Identities=13%  Similarity=-0.092  Sum_probs=45.1

Q ss_pred             HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH-HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178          172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI-KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC  248 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  248 (311)
                      ..-.+.++.+++..++..++-   +.|.......+- .-+...|++.+|.++++++....  |......+|+..|...
T Consensus        18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence            334567788888888888865   666654433222 23467788888888888876553  4444445555544433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=90.50  E-value=7.7  Score=30.96  Aligned_cols=162  Identities=9%  Similarity=-0.013  Sum_probs=88.6

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C--ChHHHHHHHHHHHhC-
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R--NLFQWNALVSGFTKN-  177 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~--~~~~y~~li~~~~~~-  177 (311)
                      ...+...|++.+|...|+.+...... +.-....-.+..++.+.|++++|...|+++.+  |  ....+-..+.|.+.- 
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence            34455778889999999888833221 12233444577888888888888888887652  2  222233233322211 


Q ss_pred             ------------CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          178 ------------ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       178 ------------g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                                  +...+|...                |..+|.-|=...-..+|...+..+.+.=    ...--.+.+.|
T Consensus        92 ~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y  151 (203)
T PF13525_consen   92 QIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFY  151 (203)
T ss_dssp             HHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             hCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence                        111222333                3344444444455555555444443220    01112356778


Q ss_pred             HhcCCHHHHHHHHhhCCC--CChh----hHHHHHHHHHhCCCcchH
Q 037178          246 GKCAFVEEMVKLFEVMPE--RNLV----SWNSIICGFSENGFSCES  285 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~~--~~~~----~y~~li~~~~~~g~~~~a  285 (311)
                      .+.|++..|..-++.+.+  |+..    ..-.|+.+|-+.|..+.+
T Consensus       152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            888888888888888775  5543    456678888888877644

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.43  E-value=1.4  Score=34.38  Aligned_cols=59  Identities=10%  Similarity=0.030  Sum_probs=39.1

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCC--ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH--NAD--LKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      .+..+...|++.| +.+.|++.|.++..  ..+  -...+-.+|+.+...+++..+.....++.
T Consensus        38 ~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4667777777777 77777777777776  222  23445666677777777777766666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=5.8  Score=32.55  Aligned_cols=166  Identities=10%  Similarity=0.015  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhh-cCCCchh--hHHHHHHHHHHhcCChhHHHHHHH
Q 037178           81 NKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAS-TQFSNDF--IINTRLITMYSLCGFPLDSRRVFD  157 (311)
Q Consensus        81 ~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~  157 (311)
                      +.|.-+.+++....--+..|+-....|...|.++.|-..++..-.. .++.||.  ..|.--+...-..++...|.++  
T Consensus        75 EqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el--  152 (308)
T KOG1585|consen   75 EQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL--  152 (308)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--
Confidence            3333444444432223445666777777888887777666654411 2344543  2343333333333443333333  


Q ss_pred             hcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC----CCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhC--
Q 037178          158 SLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL----KPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMG--  230 (311)
Q Consensus       158 ~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--  230 (311)
                               |..+-.++++..++++|-..|.+-.. ...    -++. ..|...|-.+.-..++..|.++++.--+.+  
T Consensus       153 ---------~gk~sr~lVrl~kf~Eaa~a~lKe~~-~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f  222 (308)
T KOG1585|consen  153 ---------YGKCSRVLVRLEKFTEAATAFLKEGV-AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF  222 (308)
T ss_pred             ---------HHHhhhHhhhhHHhhHHHHHHHHhhh-HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence                     45566677777788777766654322 111    1221 235555556666778888888887743332  


Q ss_pred             -CCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178          231 -LIGDVFVSNALIAMYGKCAFVEEMVKLFE  259 (311)
Q Consensus       231 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~  259 (311)
                       -+-+..+...|+.+| ..|+.|++.++..
T Consensus       223 ~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  223 LKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             cChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence             233567788888887 4688888777664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=89.89  E-value=5  Score=29.50  Aligned_cols=84  Identities=13%  Similarity=0.023  Sum_probs=38.7

Q ss_pred             HhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH---HHHHhcCC
Q 037178          175 TKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI---AMYGKCAF  250 (311)
Q Consensus       175 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~  250 (311)
                      ...|+.+.|++.|.+...   +-| ....||.-..++.-.|+.++|..=+++..+..-.-+...+.+.+   ..|...|+
T Consensus        54 aE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            445555555555555433   222 23445555555555555555555554444321111222222222   23445555


Q ss_pred             HHHHHHHHhhC
Q 037178          251 VEEMVKLFEVM  261 (311)
Q Consensus       251 ~~~A~~~~~~m  261 (311)
                      .+.|..-|+..
T Consensus       131 dd~AR~DFe~A  141 (175)
T KOG4555|consen  131 DDAARADFEAA  141 (175)
T ss_pred             hHHHHHhHHHH
Confidence            56555555543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.77  E-value=0.84  Score=39.06  Aligned_cols=52  Identities=10%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAA  227 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~  227 (311)
                      -|.+.|++++|++.|..-..   +.| |.+++..-..+|.+...+..|+.=....+
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            46778888888888877654   566 77888888888888887776665444443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=89.55  E-value=7.4  Score=32.75  Aligned_cols=186  Identities=10%  Similarity=-0.019  Sum_probs=100.9

Q ss_pred             CCCCcccHHHHHHHHHhc----CCC--HHHHHHHHHhhcc-CCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178           59 ASTQGLHFLQEITTLCEE----SKS--LNKALSLLQENLH-NADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFS  130 (311)
Q Consensus        59 ~~~~~~~~~~li~~~~~~----g~~--~~~a~~~~~~m~~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~  130 (311)
                      ..|....++.++.-|...    |..  -++-...++-... ...+. .-|..++..   ...+.+|..+|+...-+..+-
T Consensus        85 ~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~---N~~Vv~aL~L~~~~~~~~~Ii  161 (292)
T PF13929_consen   85 ADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKR---NKIVVEALKLYDGLNPDESII  161 (292)
T ss_pred             cCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHh---hHHHHHHHHHhhccCccccee
Confidence            355666666666655422    211  1233344444333 22221 114444432   334566667776443112345


Q ss_pred             chhhHHHHHHHHHHhcCC--hhHHHHHHHhcC-----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          131 NDFIINTRLITMYSLCGF--PLDSRRVFDSLK-----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~--~~~A~~l~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      -|..+...|++......+  ...-.++.+-+.     ..+..+-..+|..+++.+++.+-+++++.-....+..-|...|
T Consensus       162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW  241 (292)
T PF13929_consen  162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW  241 (292)
T ss_pred             eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence            566666666666665221  222222222222     2455666778888888888888888877765423455577778


Q ss_pred             HHHHHHHhccCChhhHHHHHHH-----HHHhCCCCcHHHHHHHHHHHHh
Q 037178          204 PCVIKACGGIADVGFGSGVHGM-----AAKMGLIGDVFVSNALIAMYGK  247 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~~~~  247 (311)
                      ..+|+.....|+..-..++.++     +++.|+..+...-..+-..+-+
T Consensus       242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            8888888888887766666543     3444556666665555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=89.11  E-value=9.1  Score=29.79  Aligned_cols=210  Identities=17%  Similarity=0.044  Sum_probs=133.3

Q ss_pred             CHHHHHHHHHhhccCCC---ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-CCCchhhHHHHHHHHHHhcCChhHHHH
Q 037178           79 SLNKALSLLQENLHNAD---LKEATGVLLQACGHEKDIEIGKRVHELVSAST-QFSNDFIINTRLITMYSLCGFPLDSRR  154 (311)
Q Consensus        79 ~~~~a~~~~~~m~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~  154 (311)
                      ....+...+.......+   ....+......+...+....+...+.... .. ........+..+...+...+..+.+.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL-ELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            55555566555555222   24666666777777777777777777765 32 334455566666777777777888888


Q ss_pred             HHHhcCC--C-ChHHHHHHHH-HHHhCCChhhHHHHHHHhhhcCCCCC----CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178          155 VFDSLKT--R-NLFQWNALVS-GFTKNELYTDVLSIFVELSSDTELKP----DNFTFPCVIKACGGIADVGFGSGVHGMA  226 (311)
Q Consensus       155 l~~~m~~--~-~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m  226 (311)
                      .+.....  + +......... .+...|+++.|...|++...   ..|    ....+......+...++.+.+...+...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            8777654  2 2122333333 67788888888888888743   333    2233334444456777888888888877


Q ss_pred             HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+.........+..+...+...+++++|...+....+.+   ...+..+...+...+..+.+...+.+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence            766422146777778888888888888888888777532   234444444444666777777777666

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.03  E-value=0.7  Score=24.95  Aligned_cols=24  Identities=21%  Similarity=0.140  Sum_probs=16.2

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHH
Q 037178          232 IGDVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       232 ~~~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      +-+...|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            446677777777777777777664

>PRK11906 transcriptional regulator; Provisional

Probab=88.96  E-value=14  Score=33.29  Aligned_cols=162  Identities=8%  Similarity=-0.087  Sum_probs=99.5

Q ss_pred             hhH--HHHHHhcccC-----CChhHHHHHHHHHHhhcCCCchh-hHHHHHHHHHHh---------cCChhHHHHHHHhcC
Q 037178           98 EAT--GVLLQACGHE-----KDIEIGKRVHELVSASTQFSNDF-IINTRLITMYSL---------CGFPLDSRRVFDSLK  160 (311)
Q Consensus        98 ~~~--~~ll~~~~~~-----~~~~~a~~~~~~m~~~~g~~~~~-~~~~~ll~~~~~---------~g~~~~A~~l~~~m~  160 (311)
                      ..|  ...+++....     .+.+.|..+|.+......+.|+- ..|..+-.++..         .....+|.++-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  6666665542     23567888888887455566653 334333333222         123345555555543


Q ss_pred             ---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhC-CCCcH
Q 037178          161 ---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMG-LIGDV  235 (311)
Q Consensus       161 ---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~  235 (311)
                         ..|..+...+..+..-.|+++.|..+|++...   +.||.. +|...--.+.-.|+.++|.+.+++..+.. ...-.
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence               34777777777777777889999999999866   667653 44444445566788999999988855442 22233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          236 FVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .+..-.++.|+..+ +++|.+++-+-.+
T Consensus       409 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~  435 (458)
T PRK11906        409 VVIKECVDMYVPNP-LKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence            44445556777654 6777777765443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=9.1  Score=36.95  Aligned_cols=50  Identities=10%  Similarity=0.056  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCCCCh-HHHHHHHHHHHhCCChhhHHHH
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKTRNL-FQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      +.|+.+|.|.++.++-.+..+...+... .-....+..+-+.+-.++|..+
T Consensus       435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence            4456666666665555555554441111 1133344444444444444444

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=88.25  E-value=6.8  Score=27.25  Aligned_cols=77  Identities=13%  Similarity=0.024  Sum_probs=51.4

Q ss_pred             ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          112 DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       112 ~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      ..++|..+-+.+. ..+-. ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-..  +.|..+++..-+.+|.
T Consensus        20 cHqEA~tIAdwL~-~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        20 CHQEANTIADWLH-LKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA   95 (115)
T ss_pred             HHHHHHHHHHHHh-cCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence            3567777777765 43311 333444455666777888888888888888888888777664  6666666666666665


Q ss_pred             h
Q 037178          192 S  192 (311)
Q Consensus       192 ~  192 (311)
                      .
T Consensus        96 ~   96 (115)
T TIGR02508        96 A   96 (115)
T ss_pred             h
Confidence            5

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=88.22  E-value=5.9  Score=27.53  Aligned_cols=75  Identities=9%  Similarity=-0.021  Sum_probs=52.4

Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..++|..+-+.+...+- ....+--+-+..++..|++++|..+.+.+.-||...|-+|-..  +.|-.+++..-+.+|
T Consensus        20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl   94 (115)
T TIGR02508        20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL   94 (115)
T ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence            45677777777666552 2444444555677889999999999999988999998776543  556666666666666

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.20  E-value=3  Score=29.03  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=35.4

Q ss_pred             HHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           82 KALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        82 ~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +..+-++.+..  ..|++....+.+++|.+.+++..|.++++-++.+.|-.  ...|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            34444444444  77888888888888888888888888888887555433  226665553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.76  E-value=4.4  Score=27.90  Aligned_cols=61  Identities=10%  Similarity=0.126  Sum_probs=38.3

Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      -++.+-+..+.. ..+.|+.....+.++||.+.+|+..|.++++-++.+. ..+...|..+++
T Consensus        24 we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            344455555555 6667777777777777777777777777777665332 224445665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.76  E-value=14  Score=31.19  Aligned_cols=66  Identities=9%  Similarity=-0.125  Sum_probs=32.3

Q ss_pred             CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          195 ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       195 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +-.++..+...+|+.+++.+++.+..++++.-... +..-|...|..+|+.-.+.|+..-..++.++
T Consensus       197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            34445555555555555555555555555443333 3333445555555555555555544444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.49  E-value=9.6  Score=35.46  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      +..-|..|-++....|++..|.+.|.+.+.          |..|+-.+...|+.+....+-....+.|.-      |.-.
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF  728 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAF  728 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHH
Confidence            556688888888888888888888887765          667777777788877766666666666632      4445


Q ss_pred             HHHHhcCCHHHHHHHHhhCC
Q 037178          243 AMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m~  262 (311)
                      -+|...|+++++.+++.+-.
T Consensus       729 ~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  729 LAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HHHHHcCCHHHHHHHHHhcC
Confidence            56777899999998887653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.26  E-value=1.4  Score=23.41  Aligned_cols=27  Identities=11%  Similarity=0.197  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455566666666666666666666544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=86.90  E-value=6.1  Score=33.02  Aligned_cols=89  Identities=10%  Similarity=0.046  Sum_probs=61.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      -.=|.|+++.+ +|.+++...-+-..  .+.-......-|-.|.+.+.+..+.++-..-. ...-.-+..-|.++...|.
T Consensus        87 vvGIQALAEmn-rWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyL  164 (309)
T PF07163_consen   87 VVGIQALAEMN-RWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYL  164 (309)
T ss_pred             hhhHHHHHHHh-hHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHH
Confidence            34478999999 99999987665554  22223344445556778898888888877666 4333445555777777766


Q ss_pred             h-----cCChhHHHHHHH
Q 037178          145 L-----CGFPLDSRRVFD  157 (311)
Q Consensus       145 ~-----~g~~~~A~~l~~  157 (311)
                      .     .|.+++|+++..
T Consensus       165 l~VLlPLG~~~eAeelv~  182 (309)
T PF07163_consen  165 LHVLLPLGHFSEAEELVV  182 (309)
T ss_pred             HHHHhccccHHHHHHHHh
Confidence            5     499999999873

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.62  E-value=18  Score=30.46  Aligned_cols=191  Identities=8%  Similarity=0.004  Sum_probs=111.1

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc----------CCCC-----hhhHHHHHHhcccCCCh---hHHHHHHHHHHh
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH----------NADL-----KEATGVLLQACGHEKDI---EIGKRVHELVSA  125 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~----------~~~~-----~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~  125 (311)
                      ..||.-...+.+.. +++.|...+++..+          ..++     ..++..++.++...+..   ++|..+.+.+..
T Consensus        37 ~~yn~G~~l~~~~~-~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~  115 (278)
T PF08631_consen   37 VCYNIGKSLLSKKD-KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES  115 (278)
T ss_pred             HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            45777777777775 67777666665543          2233     23456667777766654   557777777864


Q ss_pred             hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHH---HhCCChhhHHHHHHHhhhcCCCCCC
Q 037178          126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGF---TKNELYTDVLSIFVELSSDTELKPD  199 (311)
Q Consensus       126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~p~  199 (311)
                      +.|-+|.  ++-.-++.+.+.++.+++.+++.+|...   ....+..++..+   ... ....|...+..+.. ..+.|.
T Consensus       116 e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~-~r~~~~  191 (278)
T PF08631_consen  116 EYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLL-NRFKSS  191 (278)
T ss_pred             hCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHH-HHhCCC
Confidence            4444444  4444577777789999999999998742   234555555555   443 34566666666655 455555


Q ss_pred             cc-hH-HHHHHH---HhccC------ChhhHHHHHHHHHH-hCCCCcHHHHHHHHHH-------HHhcCCHHHHHHHHh
Q 037178          200 NF-TF-PCVIKA---CGGIA------DVGFGSGVHGMAAK-MGLIGDVFVSNALIAM-------YGKCAFVEEMVKLFE  259 (311)
Q Consensus       200 ~~-t~-~~li~~---~~~~g------~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~-------~~~~g~~~~A~~~~~  259 (311)
                      .. -. ..++..   ....+      +++....+++.+.+ .+.+.+..+-.++...       .-+.+++++|.+.|+
T Consensus       192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE  270 (278)
T ss_pred             hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            43 11 111111   12211      24455555554433 2334455555555444       346788999999887

It is also involved in sporulation [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.60  E-value=1.5  Score=24.37  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +++.|...|...|++++|..++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~   27 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEE   27 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHH
Confidence            444455555555555555555443

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=86.33  E-value=8.4  Score=28.87  Aligned_cols=80  Identities=6%  Similarity=-0.024  Sum_probs=65.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-------CCCChhhHHHHHHhcccCCC-hhHHHHHHHHHHhhcCCCchhhHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKD-IEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-------~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      ..|.++.-.+..+ ++...+.+++.+..       ...+...|++++++.+.... .-.+..+|+.++ +.+.+.+..-|
T Consensus        41 fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy  118 (145)
T PF13762_consen   41 FINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDY  118 (145)
T ss_pred             HHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence            3688888888888 99999999888865       34567789999999987776 566789999998 77888999999


Q ss_pred             HHHHHHHHhc
Q 037178          137 TRLITMYSLC  146 (311)
Q Consensus       137 ~~ll~~~~~~  146 (311)
                      ..+|.++.+.
T Consensus       119 ~~li~~~l~g  128 (145)
T PF13762_consen  119 SCLIKAALRG  128 (145)
T ss_pred             HHHHHHHHcC
Confidence            9999887765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.25  E-value=3.4  Score=33.20  Aligned_cols=118  Identities=12%  Similarity=0.032  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCcHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGDVFVSNALI  242 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li  242 (311)
                      |.+..|+.+.+.+...+|+...++-.+   -+| |..+--.+++-+|-.|++++|..-++-.-+.  ...+...+|..+|
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            345667888889999999988777544   245 4556667888999999999998776655433  2344567788877


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHH-H-HhCCCcchHHHHHHhh
Q 037178          243 AMYGKCAFVEEMVKLFEVMPERN-----LVSWNSIICG-F-SENGFSCESFDLLIKM  292 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~y~~li~~-~-~~~g~~~~a~~l~~~m  292 (311)
                      .+-.-.      .++|..-..|+     ...|-..+.+ . +..+...+|.+-+++-
T Consensus        80 r~ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreq  130 (273)
T COG4455          80 RCEAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQ  130 (273)
T ss_pred             HHHHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHH
Confidence            653221      23454444443     2345554443 2 2334355555555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.15  E-value=5.5  Score=34.98  Aligned_cols=92  Identities=9%  Similarity=0.023  Sum_probs=53.1

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      +++.+..++.+.+ .+..|+..-++.+. -++|+-.+-.-.+++...|+++.|+..|+.++ +.. +-|..+-+-|+.+-
T Consensus       259 ~~lNlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~-P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  259 CHLNLAACYLKLK-EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLE-PSNKAARAELIKLK  335 (397)
T ss_pred             HhhHHHHHHHhhh-hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHH
Confidence            4666666677777 77777777777766 55566666666667777777777777777766 332 22333333333333


Q ss_pred             HhcCChh-HHHHHHHhc
Q 037178          144 SLCGFPL-DSRRVFDSL  159 (311)
Q Consensus       144 ~~~g~~~-~A~~l~~~m  159 (311)
                      -+..... ...++|..|
T Consensus       336 ~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            3333322 234455554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=86.06  E-value=23  Score=31.02  Aligned_cols=54  Identities=6%  Similarity=-0.086  Sum_probs=25.5

Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhcCCCC----CCcchHHHHHHHHhccCChhhHHHHH
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSDTELK----PDNFTFPCVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~~~~~----p~~~t~~~li~~~~~~g~~~~a~~~~  223 (311)
                      +-.++...+.++++++.|+....-..-.    .....|..|-+-|....|+++|.-+.
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~  185 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP  185 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh
Confidence            4444445555555555555543201110    12234555555555666665555443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.00  E-value=1.2  Score=23.93  Aligned_cols=23  Identities=17%  Similarity=0.060  Sum_probs=13.4

Q ss_pred             chhhHHHHHHHHHHhcCChhHHH
Q 037178          131 NDFIINTRLITMYSLCGFPLDSR  153 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~~~~A~  153 (311)
                      -+...|+.|-..|...|++++|+
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhc
Confidence            34555666666666666666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.86  E-value=1.8  Score=23.96  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345566666666666666666665543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=85.24  E-value=1.3  Score=38.85  Aligned_cols=188  Identities=12%  Similarity=0.051  Sum_probs=96.5

Q ss_pred             HHHhcCCCHHHHHHHHHhhcc-CCCChhh----HHHHHHhcccCCChhHHHHHHHHHH--h-hcCCC-chhhHHHHHHHH
Q 037178           72 TLCEESKSLNKALSLLQENLH-NADLKEA----TGVLLQACGHEKDIEIGKRVHELVS--A-STQFS-NDFIINTRLITM  142 (311)
Q Consensus        72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~--~-~~g~~-~~~~~~~~ll~~  142 (311)
                      -+++.| +.+....+|+...+ ..-|..|    |.-+-++|.-.+++++|.+++..=.  . ..|-+ -.......|-+.
T Consensus        26 RLck~g-dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMG-DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhcc-chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            467889 99999999998888 4444443    5556667777788888887754311  0 01101 011122234444


Q ss_pred             HHhcCChhHHHHH-HHhcC------CC--ChHHHHHHHHHHHhCCCh--------------------hhHHHHHHHh---
Q 037178          143 YSLCGFPLDSRRV-FDSLK------TR--NLFQWNALVSGFTKNELY--------------------TDVLSIFVEL---  190 (311)
Q Consensus       143 ~~~~g~~~~A~~l-~~~m~------~~--~~~~y~~li~~~~~~g~~--------------------~~a~~~~~~m---  190 (311)
                      +--.|.+++|.-. |+.+.      .+  ...+|-.+...|...|+.                    +.|.+.|.+=   
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666433 22221      11  223344455555544421                    1233333221   


Q ss_pred             hhcCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHH----HhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          191 SSDTELK-PDNFTFPCVIKACGGIADVGFGSGVHGMAA----KMGL-IGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       191 ~~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      .+..|-. .-...|..|-+.|.-.|+++.|...++.=.    +-|- ......+..+.+++.-.|+++.|.+.|+.
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            1101111 123456666666666777777776665422    1221 12345666677777777777777666653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.09  E-value=14  Score=27.79  Aligned_cols=50  Identities=10%  Similarity=0.022  Sum_probs=30.0

Q ss_pred             hCCChhhHHHHHHHhhhcCCCCCCcc---hHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          176 KNELYTDVLSIFVELSSDTELKPDNF---TFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~~~~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      ..++.+++..+++.|.-   +.|+..   +|-..+  +...|++++|.++++++.+.+
T Consensus        22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence            46677777777777754   455433   333333  356667777777777766554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.98  E-value=5.2  Score=27.86  Aligned_cols=60  Identities=10%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      +..+-+..+.. ..+.|+.....+.++||.+.+++..|.++++-++.+- ......|..+++
T Consensus        28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            33444444444 5566666666666666666666666666666554432 222225555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=84.95  E-value=14  Score=27.60  Aligned_cols=78  Identities=5%  Similarity=-0.130  Sum_probs=55.2

Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      ...+.|++++|.+.|+.+..+....| ....-.-++.++.+.|++++|...+++.++..-.....-|-..+.+++....
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence            34567899999999999876333222 2345677888999999999999999999888644444566666666554433

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.80  E-value=4.6  Score=27.82  Aligned_cols=59  Identities=12%  Similarity=0.000  Sum_probs=49.0

Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHH
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSII  273 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li  273 (311)
                      |..++.+-++.+....+.|+..+..+-+.+|.|.+++.-|.++|+..+.   .+...|..++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence            6667888888888889999999999999999999999999999997763   2334565554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.73  E-value=12  Score=35.77  Aligned_cols=153  Identities=10%  Similarity=0.060  Sum_probs=94.3

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCCCc---hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQFSN---DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY  180 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~  180 (311)
                      ++.+.+.+.+++|..+-+.-.   |..+   -..+...+|+.+.-.|++++|-.+.-.|...+...|.-.+..+...++.
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l  439 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL  439 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence            344455566666666655433   3344   3456677888888888888888888888888888888888888877776


Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHH------------------HHHHhCCCCcHHHHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHG------------------MAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~------------------~m~~~g~~~~~~~~~~li  242 (311)
                      .....+.   .. ..-..+...|-.++..+.. .+...-.++..                  +..+.  .-+...-..|.
T Consensus       440 ~~Ia~~l---Pt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La  512 (846)
T KOG2066|consen  440 TDIAPYL---PT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA  512 (846)
T ss_pred             chhhccC---CC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence            6554432   21 1112244456666665554 22222221111                  11111  12233444588


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCCh
Q 037178          243 AMYGKCAFVEEMVKLFEVMPERNL  266 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m~~~~~  266 (311)
                      ..|...|+++.|++++-...++++
T Consensus       513 ~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  513 HLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             HHHHHccChHHHHHHHHhccChHH
Confidence            999999999999999998887554

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=84.65  E-value=9.2  Score=32.02  Aligned_cols=86  Identities=5%  Similarity=-0.148  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHh-cCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH--
Q 037178          137 TRLITMYSLCGFPLDSRRVFDS-LKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC--  210 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~-m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~--  210 (311)
                      ..=|.+++..|+|.++....-+ ...|   -.......|--|.|.|.+..+.++-..-.. ..-.-+...|.+++.-|  
T Consensus        87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHH
Confidence            3347888888999888765433 3322   334455667778888888888887666544 21122233477666554  


Q ss_pred             ---hccCChhhHHHHH
Q 037178          211 ---GGIADVGFGSGVH  223 (311)
Q Consensus       211 ---~~~g~~~~a~~~~  223 (311)
                         .=.|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence               4568888888776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.51  E-value=2.4  Score=21.13  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=12.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHh
Q 037178          239 NALIAMYGKCAFVEEMVKLFE  259 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~  259 (311)
                      ..+...+...|++++|.++++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            345555666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=84.43  E-value=17  Score=28.17  Aligned_cols=194  Identities=15%  Similarity=-0.006  Sum_probs=138.2

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      ...+......+...+ .+..+...+.....   .......+..........+....+...+.... .....+ .......
T Consensus        59 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~  135 (291)
T COG0457          59 AGLLLLLALALLKLG-RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL-ALDPDP-DLAEALL  135 (291)
T ss_pred             hHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH-cCCCCc-chHHHHH
Confidence            456778888888888 99999998888764   34445566677777777888889999999887 443333 1222223


Q ss_pred             HH-HHHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHH
Q 037178          140 IT-MYSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKAC  210 (311)
Q Consensus       140 l~-~~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~  210 (311)
                      .. .+...|+++.|...|++...-      ....+......+...++.+.+...+.+...   ..++  ...+..+-..+
T Consensus       136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHH
Confidence            33 788999999999999886432      223344444446778899999999999875   3333  56788888888


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ...++++.+...+.......-. ....+..+...+...|..+++...+.+..+
T Consensus       213 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         213 LKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888999999999888776422 234444444555577789999988887765

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=83.93  E-value=16  Score=27.42  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=60.1

Q ss_pred             hcCCCchh--hHHHHHHHHHHhcCChhHHHHHHHhcCC---------CChHHHHHHHHHHHhCCC-hhhHHHHHHHhhhc
Q 037178          126 STQFSNDF--IINTRLITMYSLCGFPLDSRRVFDSLKT---------RNLFQWNALVSGFTKNEL-YTDVLSIFVELSSD  193 (311)
Q Consensus       126 ~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~  193 (311)
                      +.+..++.  ...|++++-....+.+.....+++.+..         .+-..|.+++.+..++.- ---+..+|.-|++ 
T Consensus        30 ~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-  108 (145)
T PF13762_consen   30 EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-  108 (145)
T ss_pred             hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-
Confidence            44555544  3457777777777777777777777641         244567778887766655 4456677777777 


Q ss_pred             CCCCCCcchHHHHHHHHhccCCh
Q 037178          194 TELKPDNFTFPCVIKACGGIADV  216 (311)
Q Consensus       194 ~~~~p~~~t~~~li~~~~~~g~~  216 (311)
                      .+.+++..-|..+|+++.+....
T Consensus       109 ~~~~~t~~dy~~li~~~l~g~~~  131 (145)
T PF13762_consen  109 NDIEFTPSDYSCLIKAALRGYFH  131 (145)
T ss_pred             cCCCCCHHHHHHHHHHHHcCCCC
Confidence            77777778888888877665333

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=83.77  E-value=13  Score=26.24  Aligned_cols=76  Identities=11%  Similarity=0.018  Sum_probs=50.3

Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...++|..+.+.+...+- ....+--+-+..+.+.|++++|+..=.....||...|-+|  +-.+.|-.+++...+.++
T Consensus        20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl   95 (116)
T PF09477_consen   20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRL   95 (116)
T ss_dssp             T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence            356788888888887763 4455555666678888999988555555556888888655  344677777777777777

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=83.31  E-value=13  Score=26.13  Aligned_cols=78  Identities=13%  Similarity=0.038  Sum_probs=48.5

Q ss_pred             CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                      ...++|..+.+.+. ..+- -...+--+-+..+.+.|++++|+..=.....||...|-+|-..  +.|..+++...+.++
T Consensus        20 HcH~EA~tIa~wL~-~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl   95 (116)
T PF09477_consen   20 HCHQEANTIADWLE-QEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL   95 (116)
T ss_dssp             T-HHHHHHHHHHHH-HTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence            35677888888877 5442 3444444456667778888888444444456788888777654  777777777777777


Q ss_pred             hh
Q 037178          191 SS  192 (311)
Q Consensus       191 ~~  192 (311)
                      ..
T Consensus        96 a~   97 (116)
T PF09477_consen   96 AS   97 (116)
T ss_dssp             CT
T ss_pred             Hh
Confidence            55

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.21  E-value=9.1  Score=30.90  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--CCCchhhHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--QFSNDFIINTRLIT  141 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g~~~~~~~~~~ll~  141 (311)
                      |.+..|+.+.+.+ ...+|+.+.+.-.+ .+.|..+-..+++.+|-.|++++|..-++..- ..  ...+...+|..+|.
T Consensus         3 Tl~~t~seLL~~~-sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a-~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDN-SLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA-TLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhc-cHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh-hcCcccchHHHHHHHHHH
Confidence            3456677778888 88888888777666 66666777888888888888888877666554 32  23344566666665


Q ss_pred             HH
Q 037178          142 MY  143 (311)
Q Consensus       142 ~~  143 (311)
                      +-
T Consensus        81 ~e   82 (273)
T COG4455          81 CE   82 (273)
T ss_pred             HH
Confidence            43

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.83  E-value=3.3  Score=21.67  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=13.1

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      |..+...+.+.|++++|.+.|++..
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4445555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.54  E-value=2.2  Score=22.58  Aligned_cols=30  Identities=13%  Similarity=0.110  Sum_probs=20.7

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCC
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNAD   95 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~   95 (311)
                      +|..+-.++...| ++++|+..|++..++.|
T Consensus         3 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLG-DYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhC-CchHHHHHHHHHHHHCc
Confidence            4667777777788 88888888877766333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.91  E-value=36  Score=29.42  Aligned_cols=60  Identities=7%  Similarity=-0.120  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          233 GDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-------NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ....+|..+...+.+.|+++.|...+..+.+.       .....-.-.+.+-..|+.++|...+++.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567777778888888888888887777652       2344444566667778888888877777

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=80.83  E-value=31  Score=28.57  Aligned_cols=77  Identities=8%  Similarity=-0.057  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCC---ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NAD---LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      .|+.- ..-.+.| ++++|.+.|+.+.. .+-   ...+...++.++-+.++.+.|....++.....+-.||. -|-..|
T Consensus        37 LY~~g-~~~L~~g-n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl  113 (254)
T COG4105          37 LYNEG-LTELQKG-NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL  113 (254)
T ss_pred             HHHHH-HHHHhcC-CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence            34443 3445777 88888888888877 222   23445556667777888888888888777344434432 333344


Q ss_pred             HHHH
Q 037178          141 TMYS  144 (311)
Q Consensus       141 ~~~~  144 (311)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            4444

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=80.56  E-value=18  Score=25.64  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      -|..++.-|...|.+++|++++.+...
T Consensus        41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   41 KYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            377888888888888888888887754

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 98/328 (29%)

Query: 15  LFPSLRQKKSQ--PQFPATVIQRNKHSLRSIFKEKSSLSLSAKTNNASTQGLHFLQEITT 72
           LF +L  K+ +   +F   V++ N   L S         +  +    S     ++++   
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMS--------PIKTEQRQPSMMTRMYIEQRDR 118

Query: 73  LCEESKSLNK-------ALSLLQENLHNADLKEATGVLLQA-CGHEKDIEIGKRVHELVS 124
           L  +++   K           L++ L    L+ A  VL+    G       GK    +  
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLG------SGKTW--VAL 168

Query: 125 ASTQ----------------FSNDFIINTRLITMYSLC---GFPLDSRRVFDSLKTRNLF 165
                                 N     T L  +  L         SR    S     + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGM 225
              A +    K++ Y + L + + + +        F   C I                  
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKI------------------ 268

Query: 226 AAKMGLI--GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSC 283
                L+      V++ L A       ++                        + +    
Sbjct: 269 -----LLTTRFKQVTDFLSAATTTHISLDHHSM------------------TLTPD---- 301

Query: 284 ESFDLLIKMMGCEEGFIPDVITVVTVLP 311
           E   LL+K + C    +P    V+T  P
Sbjct: 302 EVKSLLLKYLDCRPQDLPRE--VLTTNP 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 51/233 (21%)

Query: 11  LWSPLFPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKS---SL---------------SL 52
           L   + P+   +          I   +  LR + K K     L               +L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 53  SAK----TNNASTQGLHFLQEITT----LCEESKSLNK--ALSLLQENLHN--ADL-KEA 99
           S K    T         FL   TT    L   S +L      SLL + L     DL +E 
Sbjct: 265 SCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN-TRLITMYSLCGF-PLDSRRVFD 157
                +         I + + + ++    + +      T +I   SL    P + R++FD
Sbjct: 323 LTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFD 376

Query: 158 SLKTRNLFQWNALVSGFT-----KNELYTDVLSIFVEL--SSDTELKPDNFTF 203
            L   ++F  +A +          + + +DV+ +  +L   S  E +P   T 
Sbjct: 377 RL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.81
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.74
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.7
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.7
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.6
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.6
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.58
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.54
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.26
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.22
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.12
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.11
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.02
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.01
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.0
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.0
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.92
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.91
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.82
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.79
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.76
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.51
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.42
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.4
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.35
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.28
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.27
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.26
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.2
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.1
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.1
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.03
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.02
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.02
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.97
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.94
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.94
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.93
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.87
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.81
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.8
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.76
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.76
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.74
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.61
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.57
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.55
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.55
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.38
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.36
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.23
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.19
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.24
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.9
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.25
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.79
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.58
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.05
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.66
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.97
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.78
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.77
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	92.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.8
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	91.77
2p58_C	116	Putative type III secretion protein YSCG; type III	91.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.54
2p58_C	116	Putative type III secretion protein YSCG; type III	91.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	91.36
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	91.11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	90.46
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.02
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.83
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.77
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.53
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.52
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	87.72
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.73
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.66
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	85.76
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.64
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.17
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.7
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	84.69
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.45
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	84.07
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.04
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	81.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.1
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.31

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.6e-36  Score=271.97  Aligned_cols=198  Identities=9%  Similarity=0.033  Sum_probs=156.6

Q ss_pred             HHHHHHHHhhcc--CCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC---------
Q 037178           81 NKALSLLQENLH--NADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF---------  148 (311)
Q Consensus        81 ~~a~~~~~~m~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~---------  148 (311)
                      ..+..+.+++++  .... ...++.+|.+|++.|++++|.++|++|. +.|+.||..+||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            455566677766  3333 3468889999999999999999999999 89999999999999999998765         


Q ss_pred             hhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHH
Q 037178          149 PLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHG  224 (311)
Q Consensus       149 ~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~  224 (311)
                      +++|.++|++|.    .||.++||+||.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|+
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            567888888886    46888888888888888888888888888888 8888888888888888888888888888888


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCC
Q 037178          225 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGFSENG  280 (311)
Q Consensus       225 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~y~~li~~~~~~g  280 (311)
                      +|.+.|+.||..+|++||++|++.|++++|.++|++|.    +|+..||++++..|+..+
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            88888888888888888888888888888888888886    378888888888887644

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6.8e-34  Score=257.07  Aligned_cols=182  Identities=10%  Similarity=0.055  Sum_probs=174.7

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCC---------hhHHHHHHHHHHhhcCCCch
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKD---------IEIGKRVHELVSASTQFSND  132 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~g~~~~  132 (311)
                      ..++.+|.+|++.| ++++|+++|++|.+  +.||..||+++|.+|++.+.         +++|.++|++|. +.|+.||
T Consensus        27 ~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd  104 (501)
T 4g26_A           27 ALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPN  104 (501)
T ss_dssp             HHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCC
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCC
Confidence            45888999999999 99999999999998  99999999999999987654         688999999999 9999999


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK  208 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~  208 (311)
                      ..+||+||++|++.|++++|.++|++|.    .||..+||++|.+|++.|++++|.++|++|.+ .|+.||..||++||+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Confidence            9999999999999999999999999997    47999999999999999999999999999999 999999999999999


Q ss_pred             HHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178          209 ACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC  248 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  248 (311)
                      +|++.|++++|.+++++|.+.|..|+..||++++..|+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.1e-23  Score=192.87  Aligned_cols=235  Identities=7%  Similarity=-0.104  Sum_probs=179.3

Q ss_pred             hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178           53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND  132 (311)
Q Consensus        53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~  132 (311)
                      ..+..++.+++..|+.++..+.+.| ++++|+.+|++|....|+..++..++.+|.+.|++++|..+|+.+. ..  +++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~  149 (597)
T 2xpi_A           74 NAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-LY--NRS  149 (597)
T ss_dssp             --------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-GG--GTC
T ss_pred             CccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-cc--ccc
Confidence            4456677788899999999999999 9999999999998866788899999999999999999999999886 33  678


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCCC-------------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKTR-------------------NLFQWNALVSGFTKNELYTDVLSIFVELSSD  193 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~  193 (311)
                      ..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++|.++|++|.+ 
T Consensus       150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  228 (597)
T 2xpi_A          150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-  228 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            889999999999999999999999965433                   478899999999999999999999988865 


Q ss_pred             CCC----------------------------------------------------------------------CCCcchH
Q 037178          194 TEL----------------------------------------------------------------------KPDNFTF  203 (311)
Q Consensus       194 ~~~----------------------------------------------------------------------~p~~~t~  203 (311)
                      .+.                                                                      .++..++
T Consensus       229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  308 (597)
T 2xpi_A          229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL  308 (597)
T ss_dssp             HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred             hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence            221                                                                      1456677


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhCC---------------------------------CCcHHHHHHHHHHHHhcCC
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKMGL---------------------------------IGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------------~~~~~~~~~li~~~~~~g~  250 (311)
                      +.++.++.+.|++++|.++|+++.+.+.                                 +.+..+|+.++.+|.+.|+
T Consensus       309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc
Confidence            7778888888888888888887775541                                 2245566666666666666


Q ss_pred             HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          251 VEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       251 ~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++|.++|+++.+   .+..+|+.++.+|.+.|++++|.++|++|
T Consensus       389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777666666542   34556777777777777777777777776

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4.2e-23  Score=190.87  Aligned_cols=233  Identities=9%  Similarity=0.032  Sum_probs=178.5

Q ss_pred             hhhcCCC--CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178           54 AKTNNAS--TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS  130 (311)
Q Consensus        54 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~  130 (311)
                      .+.++..  ++..+|+.++.+|.+.| ++++|+++|+++.+ .+.+..++..++.++.+.|+.++|..+++.+. +.. +
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~  370 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRH-P  370 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-T
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhC-c
Confidence            3444443  78888999999999999 99999999999887 55577778888888888888888888888887 443 4


Q ss_pred             chhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH
Q 037178          131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI  207 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li  207 (311)
                      .+..+++.+..+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|.++|+++.+ .+ ..+..+|..++
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~  448 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-LF-QGTHLPYLFLG  448 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT-TTCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHH
Confidence            567778888888888888888888888764   34677888888888888888888888888765 22 23567777888


Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC--hhhHHHHHHHHH
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN--LVSWNSIICGFS  277 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~--~~~y~~li~~~~  277 (311)
                      .+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+        |+  ..+|+.++.+|.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~  527 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR  527 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence            88888888888888888877664 44677788888888888888888888877642        44  567777788888


Q ss_pred             hCCCcchHHHHHHhh
Q 037178          278 ENGFSCESFDLLIKM  292 (311)
Q Consensus       278 ~~g~~~~a~~l~~~m  292 (311)
                      +.|++++|.++++++
T Consensus       528 ~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          528 KLKMYDAAIDALNQG  542 (597)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH
Confidence            888888888888777

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=8.7e-23  Score=191.21  Aligned_cols=152  Identities=11%  Similarity=0.157  Sum_probs=128.4

Q ss_pred             CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC-------CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178          128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK-------TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN  200 (311)
Q Consensus       128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~-------~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  200 (311)
                      ....-..+||+||++||+.|++++|.++|++|.       .||++|||+||++||+.|++++|.++|++|.+ .|+.||.
T Consensus       122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDv  200 (1134)
T 3spa_A          122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDL  200 (1134)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCH
T ss_pred             HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcH
Confidence            344556799999999999999999999998764       58999999999999999999999999999999 9999999


Q ss_pred             chHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHH
Q 037178          201 FTFPCVIKACGGIADV-GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIIC  274 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~  274 (311)
                      +||+++|+++|+.|+. ++|.+++++|.+.|+.||..+|++++.++.+.+-++.+.++..++.-     +-+.+.+.|.+
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence            9999999999999985 78999999999999999999999999988887666666555444432     11334445556


Q ss_pred             HHHhCC
Q 037178          275 GFSENG  280 (311)
Q Consensus       275 ~~~~~g  280 (311)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.85  E-value=4.2e-22  Score=186.64  Aligned_cols=132  Identities=11%  Similarity=0.000  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHhCCChhhHHHHHHHhhh--cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178          164 LFQWNALVSGFTKNELYTDVLSIFVELSS--DTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL  241 (311)
Q Consensus       164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  241 (311)
                      ..+||++|++||+.|++++|.++|++|.+  ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            36899999999999999999999988753  1589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH-HHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178          242 IAMYGKCAFV-EEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       242 i~~~~~~g~~-~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                      |+++|+.|+. ++|.++|++|.+    ||.++|+.++.++.+.    .+++.++++   ..+++|+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~  265 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLP  265 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCC
Confidence            9999999985 789999999984    9999999999877765    466677777   5577776

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.81  E-value=2.4e-17  Score=144.40  Aligned_cols=228  Identities=11%  Similarity=0.024  Sum_probs=171.9

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .+..+-..+...| ++++|.+.|+++.. .+.+..+|..+...+...|++++|...|+++. +.+ +.+...+..+...+
T Consensus       137 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~  213 (388)
T 1w3b_A          137 VRSDLGNLLKALG-RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLD-PNFLDAYINLGNVL  213 (388)
T ss_dssp             HHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCcHHHHHHHHHHH
Confidence            3444555555556 66666666666665 44445566666666666666666666666666 433 23445566666667


Q ss_pred             HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhH
Q 037178          144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a  219 (311)
                      ...|++++|...|++..   ..+..+|..+..++.+.|++++|.+.|+++.+   ..|+ ..+|..+..++.+.|++++|
T Consensus       214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A  290 (388)
T 1w3b_A          214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA  290 (388)
T ss_dssp             HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777766543   23577888999999999999999999999877   3454 56788999999999999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhcc
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCE  296 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~  296 (311)
                      .+.++++.+.. +.+..+++.+...|.+.|++++|.+.++++.+  | +..+|..+...|.+.|++++|.+.++++  .+
T Consensus       291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--~~  367 (388)
T 1w3b_A          291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA--IR  367 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH--HT
T ss_pred             HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh
Confidence            99999998875 66888999999999999999999999999886  3 4578999999999999999999999999  43


Q ss_pred             CCCCCCc
Q 037178          297 EGFIPDV  303 (311)
Q Consensus       297 ~g~~P~~  303 (311)
                        +.|+.
T Consensus       368 --~~p~~  372 (388)
T 1w3b_A          368 --ISPTF  372 (388)
T ss_dssp             --TCTTC
T ss_pred             --hCCCC
Confidence              45653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.78  E-value=2.8e-17  Score=143.99  Aligned_cols=224  Identities=12%  Similarity=0.055  Sum_probs=139.1

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +..+|..+..++.+.| ++++|+..|+++.+ .+.+..+|..+..++...|++++|...++.+. +.. +.+...+..+.
T Consensus        66 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~  142 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYN-PDLYCVRSDLG  142 (388)
T ss_dssp             CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHC-TTCTHHHHHHH
T ss_pred             chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHH
Confidence            4455666666666666 66666666666665 33334455556666666666666666655555 332 22233344444


Q ss_pred             HHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHH----------------------------------HHhCCChhhH
Q 037178          141 TMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSG----------------------------------FTKNELYTDV  183 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~----------------------------------~~~~g~~~~a  183 (311)
                      ..|...|++++|.+.|+++.  .| +..+|+.+...                                  +...|++++|
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            55555555555555555443  12 33444444444                                  4444555555


Q ss_pred             HHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          184 LSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       184 ~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ...|++...   ..|+ ..++..+..++.+.|++++|.+.++++.+.+ +.+..+|..+...|.+.|++++|.+.|+++.
T Consensus       223 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          223 VAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555544433   2343 4567777777788888888888888777764 3456778888888888888888888888776


Q ss_pred             C---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          263 E---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       263 ~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +   .+..+|+.+...+.+.|++++|.+.++++
T Consensus       299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4   45677888888888888888888888888

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.76  E-value=5.2e-17  Score=144.74  Aligned_cols=232  Identities=9%  Similarity=-0.082  Sum_probs=197.6

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...|..+...+.+.| ++++|+.+|+++.. .+.+..+|..+..++...|++++|...++.+. +.+ +.+..++..+
T Consensus        24 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l  100 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI-QLK-MDFTAARLQR  100 (450)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCcHHHHHHH
Confidence            35567899999999999 99999999999998 77788999999999999999999999999998 655 4567889999


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC--C-Ch---HHHHHHH------------HHHHhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT--R-NL---FQWNALV------------SGFTKNELYTDVLSIFVELSSDTELKPDNF  201 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~--~-~~---~~y~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  201 (311)
                      ..+|.+.|++++|.+.|+++.+  | +.   ..|..++            ..+.+.|++++|...|+++.. .. ..+..
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~  178 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-VC-VWDAE  178 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCChH
Confidence            9999999999999999999864  3 33   5666654            448999999999999999976 21 23567


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHH------
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSI------  272 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~l------  272 (311)
                      ++..+..++.+.|++++|.++++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+  | +...+..+      
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  257 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL  257 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            89999999999999999999999998875 56789999999999999999999999999874  4 33455554      


Q ss_pred             ------HHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178          273 ------ICGFSENGFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       273 ------i~~~~~~g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                            ...|.+.|++++|.++|+++  .+  +.|+
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~--l~--~~p~  289 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESV--MK--TEPS  289 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH--HH--HCCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--cCCc
Confidence                  88999999999999999999  44  3455

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=7.4e-17  Score=140.02  Aligned_cols=232  Identities=12%  Similarity=-0.005  Sum_probs=193.5

Q ss_pred             CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178           58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      .+..+...|..+...+.+.| ++++|...|+++.. .+.+..+|..+...+...|++++|...|+++. +.. +.+..++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~  136 (365)
T 4eqf_A           60 NPFKDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQ-PNNLKAL  136 (365)
T ss_dssp             CTTTTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHH
T ss_pred             CcccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHH
Confidence            34456677999999999999 99999999999999 76778899999999999999999999999998 554 4567889


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC--CC-----------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT--RN-----------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~--~~-----------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      ..+..+|.+.|++++|...|+++.+  |+           ...+..+...+.+.|++++|...|+++.+...-.++..++
T Consensus       137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  216 (365)
T 4eqf_A          137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ  216 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence            9999999999999999999999763  21           2334556889999999999999999998722222256789


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCC
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENG  280 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g  280 (311)
                      ..+...+...|++++|.+.+++..+.. +.+..+|..+...|.+.|++++|.+.|++..+  | +..+|..+...|.+.|
T Consensus       217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            999999999999999999999999875 55788999999999999999999999999874  4 5778999999999999


Q ss_pred             CcchHHHHHHhhh
Q 037178          281 FSCESFDLLIKMM  293 (311)
Q Consensus       281 ~~~~a~~l~~~m~  293 (311)
                      ++++|.+.++++.
T Consensus       296 ~~~~A~~~~~~al  308 (365)
T 4eqf_A          296 AYREAVSNFLTAL  308 (365)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999983

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.74  E-value=3.5e-16  Score=139.39  Aligned_cols=229  Identities=12%  Similarity=-0.014  Sum_probs=152.8

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-h---hhHHHHH------------HhcccCCChhHHHHHHHHHHhh
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLHNADL-K---EATGVLL------------QACGHEKDIEIGKRVHELVSAS  126 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~---~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~  126 (311)
                      ...|..+...+.+.| ++++|...|+++....|+ .   ..+..+.            ..+...|++++|...++.+. +
T Consensus        94 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~  171 (450)
T 2y4t_A           94 TAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-E  171 (450)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Confidence            344555555555555 555555555555552222 2   3333332            22445555555555555555 3


Q ss_pred             cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch-
Q 037178          127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT-  202 (311)
Q Consensus       127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t-  202 (311)
                      .. +.+..++..+..+|.+.|++++|.+.|+++.   ..+..+|..+...|...|++++|...|+++..   ..|+... 
T Consensus       172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~  247 (450)
T 2y4t_A          172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRC  247 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHH
T ss_pred             hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHH
Confidence            32 3345566667777777777777777777764   24667788888888888888888888888765   3454433 


Q ss_pred             HHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178          203 FPCV------------IKACGGIADVGFGSGVHGMAAKMGLIGD-----VFVSNALIAMYGKCAFVEEMVKLFEVMPE--  263 (311)
Q Consensus       203 ~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--  263 (311)
                      +..+            ...+.+.|++++|...++.+.+..  |+     ..+|..+...|.+.|++++|...++++.+  
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  325 (450)
T 2y4t_A          248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME  325 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3333            677788888888888888887754  33     44778888888888888888888888763  


Q ss_pred             C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178          264 R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~  303 (311)
                      | +..+|..+..+|...|++++|.+.++++  .+  +.|+.
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~--~~p~~  362 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETA--QE--HNEND  362 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HT--TSSSC
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHH--HH--hCcch
Confidence            3 5678888888888999999999998888  43  45553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.71  E-value=2.4e-15  Score=130.27  Aligned_cols=222  Identities=12%  Similarity=0.016  Sum_probs=138.8

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...|..+...+.+.| ++++|+..|+++.+ .+.+..++..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus        63 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~~~~~~~l~  139 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL-ELK-PDNQTALMALA  139 (368)
T ss_dssp             TCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-hcC-CCCHHHHHHHH
Confidence            4667788888888888 88888888888887 55567778888888888888888888888887 544 44667778888


Q ss_pred             HHHHhcCChhHHHHHHHhcCC--C----------------------------------------------------ChHH
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT--R----------------------------------------------------NLFQ  166 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~--~----------------------------------------------------~~~~  166 (311)
                      ..|...|++++|.+.|+++.+  |                                                    +..+
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  219 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  219 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence            888888888888888876531  1                                                    2344


Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                      |..+...|.+.|++++|...|++...   ..| +..++..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  295 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            55555555555555555555555543   122 23445555555555555555555555555443 23445555555555


Q ss_pred             HhcCCHHHHHHHHhhCCC--C-C-----------hhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          246 GKCAFVEEMVKLFEVMPE--R-N-----------LVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~~--~-~-----------~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      .+.|++++|...|++..+  | +           ..+|..+..+|...|+.++|..+++
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            555555555555554442  1 1           3455555555555555555555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=3.1e-15  Score=126.15  Aligned_cols=218  Identities=9%  Similarity=-0.049  Sum_probs=183.1

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc-hhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN-DFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~ll~~~  143 (311)
                      ..-.+.++|...| +++.|+..++..  .+|+..++..+...+...++.++|.+.++++. ..+..| +...+..+...|
T Consensus        36 ~~~~l~r~yi~~g-~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll-~~~~~P~~~~~~~~la~~~  111 (291)
T 3mkr_A           36 RDVFLYRAYLAQR-KYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIY  111 (291)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH-HSCCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH-hcccCCCCHHHHHHHHHHH
Confidence            4456788999999 999999866543  45677889999999999999999999999998 666444 556677777999


Q ss_pred             HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH---HHHHHHHhccCChhhHH
Q 037178          144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF---PCVIKACGGIADVGFGS  220 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~---~~li~~~~~~g~~~~a~  220 (311)
                      .+.|++++|.+.|++  ..+...+..++..+.+.|++++|.+.|+++.+ .  .|+....   ...+..+...|++++|.
T Consensus       112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~l~~a~~~l~~~~~~~~eA~  186 (291)
T 3mkr_A          112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-Q--DEDATLTQLATAWVSLAAGGEKLQDAY  186 (291)
T ss_dssp             HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-h--CcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence            999999999999999  56888999999999999999999999999987 3  4664322   12334444569999999


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch-HHHHHHhh
Q 037178          221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE-SFDLLIKM  292 (311)
Q Consensus       221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~-a~~l~~~m  292 (311)
                      .+++++.+.. +.+..+++.+..+|.+.|++++|...|++..+  | +..++..++..+...|+.++ +.++++++
T Consensus       187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999884 67899999999999999999999999999874  4 66789999999999999976 57888888

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.70  E-value=5.5e-15  Score=125.75  Aligned_cols=233  Identities=11%  Similarity=-0.100  Sum_probs=199.0

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      .+...+..++..+.+.| ++++|..+++++.+ .+.+...+..+...+...| ++++|...++.+. +.. +.+...+..
T Consensus        54 ~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~  130 (330)
T 3hym_B           54 FHASCLPVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLE-KTYGPAWIA  130 (330)
T ss_dssp             TCTTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTC-TTCTHHHHH
T ss_pred             CChhhHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CccHHHHHH
Confidence            35566778888999999 99999999999998 6667888999999999999 9999999999998 544 445778888


Q ss_pred             HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA  214 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g  214 (311)
                      +...|...|++++|...|++..   ..+...+..+...|...|++++|...|++..+   ..| +...+..+...+...|
T Consensus       131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcc
Confidence            9999999999999999999875   23567788899999999999999999999876   334 4578889999999999


Q ss_pred             ChhhHHHHHHHHHHhC--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcc
Q 037178          215 DVGFGSGVHGMAAKMG--------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSC  283 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~  283 (311)
                      ++++|...+++..+..        .+.+..++..+...|.+.|++++|.+.+++..+   .+..+|..+...|.+.|+++
T Consensus       208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  287 (330)
T 3hym_B          208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE  287 (330)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred             cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence            9999999999988752        133467999999999999999999999998874   46678999999999999999


Q ss_pred             hHHHHHHhhhhccCCCCCCc
Q 037178          284 ESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       284 ~a~~l~~~m~~~~~g~~P~~  303 (311)
                      +|.+.+++.  .+  +.|+.
T Consensus       288 ~A~~~~~~a--l~--~~p~~  303 (330)
T 3hym_B          288 NAVDYFHTA--LG--LRRDD  303 (330)
T ss_dssp             HHHHHHHTT--TT--TCSCC
T ss_pred             HHHHHHHHH--Hc--cCCCc
Confidence            999999999  43  45643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.70  E-value=5.2e-15  Score=125.91  Aligned_cols=225  Identities=10%  Similarity=-0.023  Sum_probs=196.5

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...+..+...+...| ++++|+++|+++.. .+.+...+..++..+...|++++|..+++++. +.. +.+...+..+
T Consensus        20 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l   96 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV-DLY-PSNPVSWFAV   96 (330)
T ss_dssp             CCCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTSTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhC-cCCHHHHHHH
Confidence            45567788888999999 99999999999998 66677788888899999999999999999998 544 4467788889


Q ss_pred             HHHHHhcC-ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178          140 ITMYSLCG-FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA  214 (311)
Q Consensus       140 l~~~~~~g-~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g  214 (311)
                      ...+...| ++++|...|++..+   .+...|..+...+...|++++|...|++..+   ..| +...+..+...+...|
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LMKGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHh
Confidence            99999999 99999999998653   3678899999999999999999999999876   234 3567778999999999


Q ss_pred             ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC------------CChhhHHHHHHHHHhCCCc
Q 037178          215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE------------RNLVSWNSIICGFSENGFS  282 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~y~~li~~~~~~g~~  282 (311)
                      ++++|.+.++...+.. +.+..++..+...|.+.|++++|...+++..+            .+..+|..+...|...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999998875 55789999999999999999999999988763            2356899999999999999


Q ss_pred             chHHHHHHhh
Q 037178          283 CESFDLLIKM  292 (311)
Q Consensus       283 ~~a~~l~~~m  292 (311)
                      ++|.+.+++.
T Consensus       253 ~~A~~~~~~a  262 (330)
T 3hym_B          253 AEALDYHRQA  262 (330)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999998

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.70  E-value=6.4e-17  Score=141.14  Aligned_cols=210  Identities=9%  Similarity=0.004  Sum_probs=96.8

Q ss_pred             hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178           53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND  132 (311)
Q Consensus        53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~  132 (311)
                      ..+++.+.|  .+|..+..++.+.| ++++|++.|.+.    +|..+|..+++++...|++++|..+++..+ +.  .++
T Consensus        24 ~fae~~~~~--~vWs~La~A~l~~g-~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k~--~~~   93 (449)
T 1b89_A           24 EFAERCNEP--AVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARE   93 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-Hh--Ccc
Confidence            344555555  48999999999999 999999999763    578899999999999999999999888777 43  456


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      ..+.+.|+.+|.+.|+++++.++++   .|+..+|+.+...|...|++++|...|..+.          .|..+..++.+
T Consensus        94 ~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~~L~~  160 (449)
T 1b89_A           94 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVH  160 (449)
T ss_dssp             ---------------CHHHHTTTTT---CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHHHHHH
Confidence            7889999999999999999998886   4788899999999999999999999999873          69999999999


Q ss_pred             cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .|++++|.+.+..+      .+..+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++..
T Consensus       161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999987      378999999999999999999988888765 45444557999999999999999999887

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=3.2e-15  Score=127.01  Aligned_cols=226  Identities=8%  Similarity=-0.041  Sum_probs=190.6

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...|..+...+...| ++++|..+|+++.. .+.+...+..+...+...|++++|...++++. +.. +.+..++..+
T Consensus        19 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l   95 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLD-PKDIAVHAAL   95 (327)
T ss_dssp             GGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-cCCHHHHHHH
Confidence            35567888889999999 99999999999998 66678889999999999999999999999998 554 4567788889


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHH--------------HH-HHHhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNAL--------------VS-GFTKNELYTDVLSIFVELSSDTELKPDNF  201 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  201 (311)
                      ...|...|++++|.+.|++..+  | +...+..+              .. .+...|++++|...++++.+ .. ..+..
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~  173 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-MN-PNDAQ  173 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH-HS-TTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh-hC-CCCHH
Confidence            9999999999999999998753  2 33333333              22 37788999999999999876 32 22567


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSE  278 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~  278 (311)
                      .+..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|++..+   .+..+|..+...|..
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999998875 55788999999999999999999999999864   456789999999999


Q ss_pred             CCCcchHHHHHHhh
Q 037178          279 NGFSCESFDLLIKM  292 (311)
Q Consensus       279 ~g~~~~a~~l~~~m  292 (311)
                      .|++++|.+.+++.
T Consensus       253 ~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          253 MSQYDLAAKQLVRA  266 (327)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHH
Confidence            99999999999998

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=1.4e-15  Score=131.98  Aligned_cols=225  Identities=10%  Similarity=-0.058  Sum_probs=187.0

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch------
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND------  132 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~------  132 (311)
                      ..+..+|..+...+.+.| ++++|+..|+++.. .+.+..++..+...+...|++++|...++++. +..  |+      
T Consensus        96 p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~  171 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQN--PKYKYLVK  171 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--HHHHCC--
T ss_pred             cCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH-HhC--ccchHHHh
Confidence            346778999999999999 99999999999998 66678899999999999999999999999998 543  22      


Q ss_pred             -----hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-Ccc
Q 037178          133 -----FIINTRLITMYSLCGFPLDSRRVFDSLKT--R---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNF  201 (311)
Q Consensus       133 -----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~  201 (311)
                           ...+..+...|.+.|++++|.+.|+++.+  |   +...|..+...|.+.|++++|.+.|++..+   ..| +..
T Consensus       172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~  248 (365)
T 4eqf_A          172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT---VRPEDYS  248 (365)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHH
Confidence                 22334458899999999999999998762  3   678999999999999999999999999876   234 467


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-------------NL  266 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-------------~~  266 (311)
                      +|..+..++.+.|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|++..+  |             +.
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  327 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG  327 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence            89999999999999999999999998875 55689999999999999999999999998874  2             26


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          267 VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       267 ~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+|..+..++...|+.+.+.++.++-
T Consensus       328 ~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          328 NIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            78999999999999999988877653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.64  E-value=6.2e-15  Score=125.28  Aligned_cols=225  Identities=8%  Similarity=-0.062  Sum_probs=189.7

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+...|..+...+.+.| ++++|...|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+...+..+
T Consensus        53 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~  129 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL-LSQ-PQYEQLGSVN  129 (327)
T ss_dssp             TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTS-TTTTTC----
T ss_pred             CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHH
Confidence            36677889999999999 99999999999998 66678899999999999999999999999998 543 2223333323


Q ss_pred             --------------HH-HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-Cc
Q 037178          140 --------------IT-MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DN  200 (311)
Q Consensus       140 --------------l~-~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~  200 (311)
                                    .. .+...|++++|.+.|++..   ..+...+..+...+.+.|++++|.+.+++..+ .  .| +.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~--~~~~~  206 (327)
T 3cv0_A          130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-L--RPDDA  206 (327)
T ss_dssp             ----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCH
T ss_pred             hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h--CCCcH
Confidence                          22 3778899999999999875   34778999999999999999999999999876 2  34 46


Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------------
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-------------  265 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------------  265 (311)
                      .++..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|++..+  |+             
T Consensus       207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  285 (327)
T 3cv0_A          207 QLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT  285 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence            788999999999999999999999998875 45788999999999999999999999998864  33             


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          266 LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       266 ~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+|..+..++.+.|+.++|.+++++.
T Consensus       286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          286 RSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            678999999999999999999999876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=1.9e-14  Score=116.00  Aligned_cols=193  Identities=10%  Similarity=-0.067  Sum_probs=115.0

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      ++...|..+-..+.+.| ++++|+..|++..+ .+.+...+..+...+.+.|++++|...+++.. +.. +.+...+..+
T Consensus         3 ~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALG-RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV-ART-PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHH
Confidence            34456677777777778 88888888887777 55556677777777777888888888887777 443 3345566667


Q ss_pred             HHHHHhc-----------CChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178          140 ITMYSLC-----------GFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC  205 (311)
Q Consensus       140 l~~~~~~-----------g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~  205 (311)
                      ..+|.+.           |++++|...|++..  .| +...|..+...+...|++++|...|++..+ ..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHH
Confidence            7777776           66666666666543  22 445566666666666666666666666555 33  44555556


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +..++...|++++|...++...+.. +.+...+..+...+.+.|++++|...|++
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            6666666666666666666665553 33455555666666666666666655554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.61  E-value=5.8e-14  Score=120.60  Aligned_cols=224  Identities=9%  Similarity=-0.092  Sum_probs=187.1

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +..|..+...+...| ++++|+..|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI-ALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCcchHHHHHHH
Confidence            445778888999999 99999999999998 66678899999999999999999999999998 554 446678888999


Q ss_pred             HHHhcCChhHHHHHHHhcCC--C----ChHHHHHH------------HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          142 MYSLCGFPLDSRRVFDSLKT--R----NLFQWNAL------------VSGFTKNELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~--~----~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      .|.+.|++++|...|++..+  |    +...+..+            ...+...|++++|...|+++.+ .. +.+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VC-VWDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCchHHH
Confidence            99999999999999998754  3    33444444            5788999999999999999876 21 2356778


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHH----------
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-LVSWN----------  270 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~y~----------  270 (311)
                      ..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+  |+ ...+.          
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence            889999999999999999999998875 55788999999999999999999999998874  33 33333          


Q ss_pred             --HHHHHHHhCCCcchHHHHHHhh
Q 037178          271 --SIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       271 --~li~~~~~~g~~~~a~~l~~~m  292 (311)
                        .+...+.+.|++++|.+.+++.
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~  260 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESV  260 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence              2366789999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.4e-14  Score=129.32  Aligned_cols=157  Identities=8%  Similarity=-0.088  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      ..++..+...+...|++++|...|++..  .|+...|..+...+...|++++|...|++... . ...+...+..+...+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~  314 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALK-L-DSNNSSVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT-T-CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh-c-CcCCHHHHHHHHHHH
Confidence            3455555666666666666666666543  23355566666666666666666666666654 1 112344566666666


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHH
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                      ...|++++|...++...+.. +.+..++..+...|.+.|++++|.+.++++.+   .+..+|..+...|...|++++|.+
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            66677777777766666554 33456666666667777777777777766553   245566777777777777777777


Q ss_pred             HHHhh
Q 037178          288 LLIKM  292 (311)
Q Consensus       288 l~~~m  292 (311)
                      .++++
T Consensus       394 ~~~~a  398 (514)
T 2gw1_A          394 QYDLA  398 (514)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77776

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=5.4e-14  Score=115.24  Aligned_cols=215  Identities=11%  Similarity=-0.092  Sum_probs=185.3

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCch----hhHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSND----FIIN  136 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~----~~~~  136 (311)
                      ..|..+-..+...| ++++|+..|++... . .+...+..+...+...|++++|...++.+. +..  ..++    ..++
T Consensus         6 ~~~~~~g~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKAR-QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHHHH
Confidence            45788888999999 99999999999998 7 888999999999999999999999999988 432  1111    5788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI  213 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~  213 (311)
                      ..+...|.+.|++++|...|++..+  ++.       ..+.+.|++++|...++++..   ..| +...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence            8999999999999999999998763  442       346677889999999999876   334 346788889999999


Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      |++++|...+++..+.. +.+..+|..+...|.+.|++++|.+.|++..+   .+..+|..+...|...|++++|.+.++
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999998876 55788999999999999999999999998874   356789999999999999999999999


Q ss_pred             hh
Q 037178          291 KM  292 (311)
Q Consensus       291 ~m  292 (311)
                      +.
T Consensus       232 ~a  233 (258)
T 3uq3_A          232 AA  233 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.60  E-value=2.3e-13  Score=116.83  Aligned_cols=231  Identities=12%  Similarity=-0.034  Sum_probs=178.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC----ChhhHHHH------------HHhcccCCChhHHHHHHHHHHh
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNAD----LKEATGVL------------LQACGHEKDIEIGKRVHELVSA  125 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~  125 (311)
                      +...|..+...+...| ++++|...|+++....|    +...+..+            ...+...|++++|...++.+. 
T Consensus        70 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-  147 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL-  147 (359)
T ss_dssp             CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence            4567888888888888 89999999988888444    44444444            467778888999999988887 


Q ss_pred             hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178          126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-  201 (311)
Q Consensus       126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-  201 (311)
                      +.. +.+..++..+...|.+.|++++|...|++..+   .+...|..+...+...|++++|...|++..+   ..|+.. 
T Consensus       148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~  223 (359)
T 3ieg_A          148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKR  223 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchH
Confidence            543 45667788888889999999999999888653   3677888899999999999999999988876   334432 


Q ss_pred             hHH------------HHHHHHhccCChhhHHHHHHHHHHhCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178          202 TFP------------CVIKACGGIADVGFGSGVHGMAAKMGLIGDV----FVSNALIAMYGKCAFVEEMVKLFEVMPE--  263 (311)
Q Consensus       202 t~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~--  263 (311)
                      .+.            .+...+.+.|++++|...++...+..-. +.    ..+..+...|.+.|++++|.+.+++..+  
T Consensus       224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            222            2355688889999999999998876522 32    3355677889999999999999998874  


Q ss_pred             C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178          264 R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV  303 (311)
Q Consensus       264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~  303 (311)
                      | +..+|..+...|...|++++|.+.+++.  .+  +.|+.
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a--~~--~~p~~  339 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAA--QE--HNEND  339 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HT--TCTTC
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--cCCCC
Confidence            4 6678999999999999999999999998  43  35653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=1.3e-13  Score=119.20  Aligned_cols=215  Identities=13%  Similarity=-0.034  Sum_probs=153.4

Q ss_pred             HHhcCCCHHHHHH-HHHhhccCC---C--ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178           73 LCEESKSLNKALS-LLQENLHNA---D--LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC  146 (311)
Q Consensus        73 ~~~~g~~~~~a~~-~~~~m~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~  146 (311)
                      +.-.| ++++|++ .|++.....   |  +...+..+...+...|++++|...++.+. +.. +.+..++..+..+|.+.
T Consensus        35 ~~~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           35 HPWLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQD-PKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHT
T ss_pred             hHHHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHC
Confidence            33457 8999999 999877722   2  35678889999999999999999999998 654 55677889999999999


Q ss_pred             CChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC---------------------------
Q 037178          147 GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL---------------------------  196 (311)
Q Consensus       147 g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------  196 (311)
                      |++++|.+.|++..   ..+..+|..+...|...|++++|...|+++.. ...                           
T Consensus       112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC---------------CTTHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            99999999999865   34788999999999999999999999998765 221                           


Q ss_pred             --------------------CC---CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178          197 --------------------KP---DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       197 --------------------~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  253 (311)
                                          .|   +..++..+...+.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence                                12   23455666666667777777777777766653 3355667777777777777777


Q ss_pred             HHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          254 MVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       254 A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |.+.|++..+   .+..+|..+...|.+.|++++|.+.+++.
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  311 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  311 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7777776653   34556677777777777777777777766

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=1.3e-13  Score=110.64  Aligned_cols=195  Identities=9%  Similarity=-0.116  Sum_probs=124.3

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...|..+...+...| ++++|...|+++.+ .+.+...+..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQ-DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL-SIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH-HhC-CCChHHHHHHH
Confidence            3445666777777777 77777777777776 55556667777777777777777777777776 433 33455666666


Q ss_pred             HHHHhc-CChhHHHHHHHhcCC----C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178          141 TMYSLC-GFPLDSRRVFDSLKT----R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI  213 (311)
Q Consensus       141 ~~~~~~-g~~~~A~~l~~~m~~----~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~  213 (311)
                      ..|... |++++|...|+++.+    + +...|..+...+...|++++|...|+++.+ .  .| +...+..+...+.+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA-A--QPQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--STTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCchHHHHHHHHHHHc
Confidence            677777 777777777766543    1 245566666666677777777777766654 2  23 245566666666666


Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |++++|...++...+.....+...+..+...+.+.|+.++|...++.+.
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            6666666666666655421455556666666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=2.3e-13  Score=111.47  Aligned_cols=193  Identities=7%  Similarity=-0.128  Sum_probs=134.0

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      ...|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|.+.++++. +.. +.+..++..+..
T Consensus        37 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRG-NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL-ASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTT-CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-cCcHHHHHHHHH
Confidence            566778888888888 88888888888877 55567777777888888888888888888877 443 335566677777


Q ss_pred             HHHhcCChhHHHHHHHhcCC----C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCC
Q 037178          142 MYSLCGFPLDSRRVFDSLKT----R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIAD  215 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~----~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~  215 (311)
                      .|.+.|++++|.+.|++..+    | +...|..+...+.+.|++++|.+.|++..+ .  .| +...+..+...+...|+
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-L--NRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHcCC
Confidence            77777777777777777654    2 345666677777777777777777777655 2  23 34556666666777777


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +++|...++...+.. +.+...+..+...|.+.|+.++|.+.++++.
T Consensus       191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            777777777665543 3455566666666667777777776666655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=4.6e-14  Score=113.67  Aligned_cols=192  Identities=11%  Similarity=-0.026  Sum_probs=156.6

Q ss_pred             CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHH
Q 037178           94 ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNAL  170 (311)
Q Consensus        94 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~l  170 (311)
                      +++...+..+...+.+.|++++|...++... +.. +.+...+..+...+.+.|++++|...|++..   ..+...|..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4677788889999999999999999999998 554 4567788889999999999999999999865   3477889999


Q ss_pred             HHHHHhC-----------CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178          171 VSGFTKN-----------ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS  238 (311)
Q Consensus       171 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  238 (311)
                      ...+.+.           |++++|...|++..+   +.|+ ...+..+-.++...|++++|...+++..+..  .+...+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  154 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR  154 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence            9999999           999999999999876   4565 5678888899999999999999999999988  788999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+...|...|++++|...|++..+  | +...+..+...+.+.|++++|.+.+++.
T Consensus       155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999999874  4 5678999999999999999999999887

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.58  E-value=1.7e-13  Score=112.26  Aligned_cols=192  Identities=10%  Similarity=-0.017  Sum_probs=167.5

Q ss_pred             hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH
Q 037178           97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG  173 (311)
Q Consensus        97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~  173 (311)
                      ...+..+...+...|++++|...++.+. +.. +.+..++..+...|.+.|++++|.+.|++..   ..+...|..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKAL-EID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            4567777888889999999999999998 554 4567788889999999999999999999865   3477889999999


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE  252 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  252 (311)
                      |...|++++|.+.|+++.. .+..|+ ...+..+...+...|++++|.+.+++..+.. +.+..++..+...|.+.|+++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999976 555564 5678888999999999999999999998876 456889999999999999999


Q ss_pred             HHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          253 EMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       253 ~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +|...+++..+   .+...+..+...+...|+.++|.+.++++
T Consensus       193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999998875   45668888999999999999999999999

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=4.2e-14  Score=127.76  Aligned_cols=225  Identities=10%  Similarity=-0.027  Sum_probs=194.8

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +...|..+...+...| ++++|...|+++....|+...+..+...+...|++++|...++.+. +.. +.+..++..+..
T Consensus       236 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~  312 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKN-DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL-KLD-SNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcC-cCCHHHHHHHHH
Confidence            4567888999999999 9999999999999833448889999999999999999999999998 544 446778889999


Q ss_pred             HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChh
Q 037178          142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~  217 (311)
                      .|.+.|++++|...|++..   ..+...|..+...+...|++++|...|+++.+ .  .| +..++..+...+.+.|+++
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR-K--FPEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH-H--STTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H--cccCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999864   34678999999999999999999999999876 2  34 4678889999999999999


Q ss_pred             hHHHHHHHHHHhCCC-Cc----HHHHHHHHHHHHh---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178          218 FGSGVHGMAAKMGLI-GD----VFVSNALIAMYGK---CAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF  286 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~  286 (311)
                      +|...++.+.+..-. ++    ..++..+...|.+   .|++++|.+.|++..+   .+..+|..+...|.+.|++++|.
T Consensus       390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  469 (514)
T 2gw1_A          390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI  469 (514)
T ss_dssp             HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence            999999998765311 11    3489999999999   9999999999998874   45678999999999999999999


Q ss_pred             HHHHhh
Q 037178          287 DLLIKM  292 (311)
Q Consensus       287 ~l~~~m  292 (311)
                      +.+++.
T Consensus       470 ~~~~~a  475 (514)
T 2gw1_A          470 TLFEES  475 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999998

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.56  E-value=2.6e-13  Score=123.36  Aligned_cols=63  Identities=10%  Similarity=0.033  Sum_probs=54.1

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELV  123 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  123 (311)
                      ..+...|..+..++.+.| ++++|++.|+++.. .+.+..++..+...+...|++++|...++.+
T Consensus        56 p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  119 (537)
T 3fp2_A           56 PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL  119 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346678889999999999 99999999999988 6667788888999999999999999999755

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.56  E-value=2e-13  Score=113.18  Aligned_cols=209  Identities=8%  Similarity=-0.107  Sum_probs=152.8

Q ss_pred             cCCCHHHHHHHHHhhcc-CC----CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChh
Q 037178           76 ESKSLNKALSLLQENLH-NA----DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPL  150 (311)
Q Consensus        76 ~g~~~~~a~~~~~~m~~-~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~  150 (311)
                      .| ++++|+..|+++.. .+    .+..++..+...+...|++++|...++++. +.. +.+..++..+...|...|+++
T Consensus        18 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           18 TL-QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CH-HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             cc-hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcC-CCcHHHHHHHHHHHHHccCHH
Confidence            35 78888888888777 21    135567777778888888888888888887 543 345677777888888888888


Q ss_pred             HHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178          151 DSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAA  227 (311)
Q Consensus       151 ~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  227 (311)
                      +|.+.|++..+   .+...|..+...|.+.|++++|...|+++.+   ..|+.......+..+...|++++|...+....
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88888887652   3667788888888888888888888888766   44655555555556667788888888887776


Q ss_pred             HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          228 KMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN-------LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       228 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ... +++...+. ++..+...++.++|.+.+++..+.+       ..+|..+...|...|++++|.+.+++.
T Consensus       172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            654 33444443 6666777777888888888777532       467777888888888888888888888

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=5.7e-14  Score=114.22  Aligned_cols=198  Identities=9%  Similarity=-0.045  Sum_probs=142.4

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      ..+...|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|...++.+. +.. +.+..++..
T Consensus        20 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~   96 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFG-DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELD-SSAATAYYG   96 (243)
T ss_dssp             -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CcchHHHHH
Confidence            345566788888888999 99999999999988 56677888888889999999999999999988 544 446777888


Q ss_pred             HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD  215 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~  215 (311)
                      +...|.+.|++++|.+.|++..   ..+...|..+...+.+.|++++|...+++..+ .. ..+...+..+...+.+.|+
T Consensus        97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-LN-ENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHcCC
Confidence            8888999999999999988765   34677888888888999999999999988865 21 2245677788888888888


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +++|...++...+.. +.+..++..+...|.+.|++++|.+.+++..+
T Consensus       175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            888888888887765 44677888888888888888888888887764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=5.4e-13  Score=110.48  Aligned_cols=222  Identities=7%  Similarity=-0.123  Sum_probs=181.4

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND--FIINTRLIT  141 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~  141 (311)
                      .+......+...| ++++|+..|++..+ .+.+...+..+...+...|++++|...++.+. +.+-.++  ...|..+..
T Consensus         5 ~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNN-NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence            4556677888999 99999999999988 55556689999999999999999999999999 5432222  234788999


Q ss_pred             HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChh
Q 037178          142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVG  217 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~  217 (311)
                      .|.+.|++++|.+.|++..   ..+...|..+...|...|++++|...|++..+   ..|+ ...+..+...+...++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875   34678999999999999999999999999976   3554 455666663555556999


Q ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCC-----CC------hhhHHHHHHHHHhCCCcc
Q 037178          218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPE-----RN------LVSWNSIICGFSENGFSC  283 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~------~~~y~~li~~~~~~g~~~  283 (311)
                      +|.+.+++..+.. +.+...+..+...+...|+   +++|...+++..+     ++      ..+|..+...|.+.|+++
T Consensus       160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999998875 4457888888888888888   7777777776653     33      257888999999999999


Q ss_pred             hHHHHHHhh
Q 037178          284 ESFDLLIKM  292 (311)
Q Consensus       284 ~a~~l~~~m  292 (311)
                      +|.+.+++.
T Consensus       239 ~A~~~~~~a  247 (272)
T 3u4t_A          239 KADAAWKNI  247 (272)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999999

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.55  E-value=5.9e-14  Score=116.37  Aligned_cols=222  Identities=8%  Similarity=-0.089  Sum_probs=176.5

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...|..+...+...| ++++|...|+++.. .+.+..+|..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus        42 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la  118 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcC-ccccHHHHHHH
Confidence            4567899999999999 99999999999998 66678899999999999999999999999998 544 44678888999


Q ss_pred             HHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~  218 (311)
                      .+|.+.|++++|.+.|+++.  .|+...+...+..+...|++++|...+++... . ..++...+ .++..+...++.++
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~  195 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K-SDKEQWGW-NIVEFYLGNISEQT  195 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H-SCCCSTHH-HHHHHHTTSSCHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCcchHHH-HHHHHHHHhcCHHH
Confidence            99999999999999999876  35444445555566777999999999988765 2 22344444 47777888888899


Q ss_pred             HHHHHHHHHHhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178          219 GSGVHGMAAKMGLI---GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL  289 (311)
Q Consensus       219 a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~  289 (311)
                      |...+....+....   .+..++..+...|.+.|++++|...|++..+.+...+.....++...|++++|.+.+
T Consensus       196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence            99988877544311   125889999999999999999999999998765555566677888888888887765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=1.4e-12  Score=104.54  Aligned_cols=193  Identities=6%  Similarity=-0.103  Sum_probs=168.3

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVS  172 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~  172 (311)
                      +...+..+...+...|++++|...++.+. +.. +.+...+..+...|...|++++|.+.|++..   ..+...|..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDAL-KSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45677888889999999999999999998 544 4457788889999999999999999999875   347788999999


Q ss_pred             HHHhC-CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          173 GFTKN-ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       173 ~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      .+... |++++|...|+++.+ .+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            99999 999999999999986 544454 5678889999999999999999999998875 4468899999999999999


Q ss_pred             HHHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          251 VEEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       251 ~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++|.+.+++..+    .+...+..+...+...|+.+.|..+++.+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            9999999998864    45677888888999999999999999998

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.54  E-value=9.2e-13  Score=119.78  Aligned_cols=222  Identities=11%  Similarity=-0.019  Sum_probs=189.1

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      +|..+-..+...| ++++|...|++.....|+...+..+...+...|++++|...++.+. +.. +.+..++..+...|.
T Consensus       245 ~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          245 ALCYTGIFHFLKN-NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAV-DLN-PEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHh-ccC-CCCHHHHHHHHHHHH
Confidence            5677778888999 9999999999999955668889999999999999999999999998 554 456778899999999


Q ss_pred             hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHH
Q 037178          145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~  220 (311)
                      ..|++++|...|++..   ..+...|..+...+...|++++|...|++..+ .  .| +...+..+...+...|++++|.
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL-K--FPTLPEVPTFFAEILTDRGDFDTAI  398 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999875   34678899999999999999999999999976 3  34 4568889999999999999999


Q ss_pred             HHHHHHHHhCC-----CCcHHHHHHHHHHHHhc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCc
Q 037178          221 GVHGMAAKMGL-----IGDVFVSNALIAMYGKC----------AFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFS  282 (311)
Q Consensus       221 ~~~~~m~~~g~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~  282 (311)
                      +.++.+.+..-     ......+..+...|.+.          |++++|...|++..+   .+..+|..+...|.+.|++
T Consensus       399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~  478 (537)
T 3fp2_A          399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI  478 (537)
T ss_dssp             HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence            99999876531     11223345556777787          999999999999874   3567899999999999999


Q ss_pred             chHHHHHHhh
Q 037178          283 CESFDLLIKM  292 (311)
Q Consensus       283 ~~a~~l~~~m  292 (311)
                      ++|.+.|++.
T Consensus       479 ~~A~~~~~~a  488 (537)
T 3fp2_A          479 DEAIELFEDS  488 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999998

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.54  E-value=3.7e-13  Score=113.42  Aligned_cols=208  Identities=8%  Similarity=-0.022  Sum_probs=170.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhccCCCCh--hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178           70 ITTLCEESKSLNKALSLLQENLHNADLK--EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG  147 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g  147 (311)
                      |+-....| ++..|+..++......|+.  .....+.+++...|+++.|...++.    . -+|+..++..+...+...|
T Consensus         6 ~~~~~~~g-~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIG-SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHH-HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCC
Confidence            45566778 9999999998877644443  4556778999999999998875543    2 3678889999999999999


Q ss_pred             ChhHHHHHHHhcC----CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178          148 FPLDSRRVFDSLK----TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV  222 (311)
Q Consensus       148 ~~~~A~~l~~~m~----~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~  222 (311)
                      +.++|.+.++++.    .| +...+..+...+...|++++|.+.+++       ..+...+..+...+.+.|++++|.+.
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999863    24 566778888999999999999999976       34677899999999999999999999


Q ss_pred             HHHHHHhCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          223 HGMAAKMGLIGDVF---VSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       223 ~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ++.+.+..  |+..   ....++..+...|++++|..+|+++.+   .+...|+.+..++.+.|++++|.+.+++.
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999875  4432   123344555667999999999999974   46778999999999999999999999998

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.52  E-value=3.7e-12  Score=105.84  Aligned_cols=222  Identities=9%  Similarity=-0.028  Sum_probs=189.4

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      +..++..+-..+...| ++++|+..|++..+ +.+...+..+...+..    .+++++|...|++.. +.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEK-DFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CHHHHH
Confidence            4456777888889999 99999999999887 3455677778888888    999999999999998 665   677788


Q ss_pred             HHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178          138 RLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIK  208 (311)
Q Consensus       138 ~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~  208 (311)
                      .+...|..    .|++++|.+.|++..+ .+..++..+...|..    .|++++|...|++..+ .+   +...+..+-.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~  154 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence            89999999    9999999999998654 477889999999999    9999999999999987 54   5567777777


Q ss_pred             HHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh-
Q 037178          209 ACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE-  278 (311)
Q Consensus       209 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~-  278 (311)
                      .+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...|.+ 
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence            7877    899999999999998875   56788889999999    9999999999998775 346678888899998 


Q ss_pred             ---CCCcchHHHHHHhhhhccCC
Q 037178          279 ---NGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       279 ---~g~~~~a~~l~~~m~~~~~g  298 (311)
                         .++.++|.+.+++.  .+.|
T Consensus       232 ~~~~~~~~~A~~~~~~a--~~~~  252 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKG--CKLG  252 (273)
T ss_dssp             SSSSCCSTTHHHHHHHH--HHHT
T ss_pred             CCcccCHHHHHHHHHHH--HHcC
Confidence               99999999999988  5543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=3.4e-13  Score=109.59  Aligned_cols=193  Identities=9%  Similarity=0.041  Sum_probs=151.3

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALV  171 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li  171 (311)
                      .....|..+...+...|++++|...++++. +.. +.+...+..+...|.+.|++++|.+.|++..   ..+...|..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAI-EEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHH-TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            455677778888899999999999999998 543 4567888889999999999999999999865   34778899999


Q ss_pred             HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178          172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV  251 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  251 (311)
                      ..+...|++++|.+.|++..+ .. ..+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALR-AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            999999999999999999876 32 2356678889999999999999999999998875 45788999999999999999


Q ss_pred             HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          252 EEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       252 ~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ++|.+.|++..+   .+..+|..+...|...|++++|.+.+++.
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999999998874   45678999999999999999999999999

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=1.9e-12  Score=113.04  Aligned_cols=222  Identities=8%  Similarity=-0.027  Sum_probs=188.8

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCC-hhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKD-IEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      ..|+.+-..+...| ++++|+..|++... .+-+...|..+..++...|+ +++|...++++. +.. +-+...|+.+..
T Consensus        98 ~a~~~lg~~~~~~g-~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDE-RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTC-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHC-CCCHHHHHHHHH
Confidence            46888888899999 99999999999999 66667889999999999996 999999999999 655 456788999999


Q ss_pred             HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc-cCCh
Q 037178          142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG-IADV  216 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~-~g~~  216 (311)
                      +|.+.|++++|...|++..   ..+...|..+..++.+.|++++|+..|+++.+   +.|+ ...|+.+..++.+ .|..
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999876   34889999999999999999999999999987   4564 5678888888888 6666


Q ss_pred             hhH-----HHHHHHHHHhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHhhCC-C-CChhhHHHHHHHHHhCC-------
Q 037178          217 GFG-----SGVHGMAAKMGLIGDVFVSNALIAMYGKCA--FVEEMVKLFEVMP-E-RNLVSWNSIICGFSENG-------  280 (311)
Q Consensus       217 ~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~-~-~~~~~y~~li~~~~~~g-------  280 (311)
                      ++|     ...+.+..+.. +-+...|+.+...|.+.|  ++++|.+.++++. . .+...+..+...|.+.|       
T Consensus       252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            888     47888888775 457889999999999988  6899999998882 1 35568889999998874       


Q ss_pred             --CcchHHHHHHhh
Q 037178          281 --FSCESFDLLIKM  292 (311)
Q Consensus       281 --~~~~a~~l~~~m  292 (311)
                        ..++|.++++++
T Consensus       331 ~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          331 EDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence              358899999988

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.48  E-value=1.4e-13  Score=120.24  Aligned_cols=177  Identities=10%  Similarity=0.061  Sum_probs=88.1

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+|...|..++.++...| ++++|...++..++..+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.+
T Consensus        58 a~D~~~y~~V~~~ae~~g-~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~I  128 (449)
T 1b89_A           58 ADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQV  128 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTT--------CC--------
T ss_pred             CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHH
Confidence            457778999999999999 9999999777776644557888999999999999988776663        3677799999


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      ...|...|++++|...|..+     ..|..++.++++.|++++|.+.++++       .+..||..++.+|...|+++.|
T Consensus       129 Gd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          129 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             --------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHH
Confidence            99999999999999999988     37999999999999999999999887       2678899999999999999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ......     +..+..-...++..|.+.|++++|..+++...
T Consensus       197 ~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          197 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            654443     22333335568888999999999988888665

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=2.9e-11  Score=102.53  Aligned_cols=207  Identities=10%  Similarity=-0.035  Sum_probs=156.9

Q ss_pred             HHHHHHHHhhcc-CCCChhhHHHHHHhcc-------cCCCh-------hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           81 NKALSLLQENLH-NADLKEATGVLLQACG-------HEKDI-------EIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      ++|..+|++... .+.+...|..+...+.       ..|++       ++|..+|++.. +.-.+-+...|..+...+.+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHh
Confidence            678888888888 6667777877777665       35776       88999999888 42113355688888888999


Q ss_pred             cCChhHHHHHHHhcCC--C-ChH-HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH-hccCChhhH
Q 037178          146 CGFPLDSRRVFDSLKT--R-NLF-QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKAC-GGIADVGFG  219 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~~--~-~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~-~~~g~~~~a  219 (311)
                      .|++++|.++|++..+  | +.. .|..+...+.+.|++++|..+|++..+ .  .|+ ...|....... ...|+.++|
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~--~p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999988653  3 343 788888888889999999999998876 3  233 33343332221 236899999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-------NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .++|+...+.. +-+...|..++..+.+.|++++|..+|++..+.       ....|..++..+.+.|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99998887764 446788888899999999999999999887641       3457888888888899999999998888

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=3.4e-12  Score=114.88  Aligned_cols=208  Identities=10%  Similarity=-0.097  Sum_probs=177.4

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCCh-hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDI-EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVF  156 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~  156 (311)
                      .+++++..++.... .+.+...+..+...+...|++ ++|...|++.. +.. +.+...|..+..+|.+.|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV-KLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46778888887776 555778899999999999999 99999999998 554 445778999999999999999999999


Q ss_pred             HhcC--CCChHHHHHHHHHHHhC---------CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhcc--------CCh
Q 037178          157 DSLK--TRNLFQWNALVSGFTKN---------ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGI--------ADV  216 (311)
Q Consensus       157 ~~m~--~~~~~~y~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~--------g~~  216 (311)
                      ++..  .|+...|..+...+...         |++++|.+.|++..+   ..|+ ...|..+..++...        |++
T Consensus       161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            9875  46778899999999999         999999999999876   3454 56788888999888        999


Q ss_pred             hhHHHHHHHHHHhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          217 GFGSGVHGMAAKMGLI---GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      ++|.+.+++..+.. +   -+...|..+...|.+.|++++|.+.|++..+  | +..++..+...+...|++++|.+.+.
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998874 3   4789999999999999999999999998874  4 45678889999999999999987665


Q ss_pred             hh
Q 037178          291 KM  292 (311)
Q Consensus       291 ~m  292 (311)
                      ++
T Consensus       317 ~~  318 (474)
T 4abn_A          317 KT  318 (474)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=5e-12  Score=103.41  Aligned_cols=182  Identities=6%  Similarity=-0.101  Sum_probs=159.3

Q ss_pred             hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-C-------hHH
Q 037178           97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-N-------LFQ  166 (311)
Q Consensus        97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~-------~~~  166 (311)
                      ...|..+...+...|++++|...++.+. +..  .+..++..+..+|...|++++|.+.|++..+  | +       ...
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            4567788888999999999999999999 666  7788899999999999999999999998763  2 2       578


Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG  246 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  246 (311)
                      |..+...+.+.|++++|...|++...   ..|+       ...+.+.|++++|...++.+.+.. +.+...+..+...|.
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLT---EHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHh---cCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence            99999999999999999999999977   3455       345777899999999999988764 446788999999999


Q ss_pred             hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          247 KCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       247 ~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..|++++|.+.|++..+   .+..+|..+...|...|++++|.+.+++.
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999874   46778999999999999999999999999

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=2.6e-10  Score=94.13  Aligned_cols=197  Identities=8%  Similarity=0.013  Sum_probs=160.2

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChh----hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKE----ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      .+...|..+...+...| ++++|+..|++.....++..    .|..+...+...|++++|...++... +.. +.+..++
T Consensus        35 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~  111 (272)
T 3u4t_A           35 NSPYIYNRRAVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV-DRD-TTRLDMY  111 (272)
T ss_dssp             CCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCTHHH
T ss_pred             CcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcC-cccHHHH
Confidence            35568999999999999 99999999999988223333    38889999999999999999999998 544 4456788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG  212 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~  212 (311)
                      ..+...|.+.|++++|...|++..+   .+...|..+...+...+++++|.+.|++..+   ..|+ ...+..+...+..
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAA  188 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHH
Confidence            9999999999999999999999874   3667788888344445699999999999976   3455 5667778888888


Q ss_pred             cCC---hhhHHHHHHHHHHhC-CCCc------HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          213 IAD---VGFGSGVHGMAAKMG-LIGD------VFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       213 ~g~---~~~a~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .|+   .++|...+++..+.. -.|+      ..+|..+...|.+.|++++|.+.|++..+
T Consensus       189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  249 (272)
T 3u4t_A          189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA  249 (272)
T ss_dssp             HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            888   888999998887652 1222      26888899999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.6e-11  Score=103.28  Aligned_cols=228  Identities=7%  Similarity=-0.038  Sum_probs=164.5

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----C---CC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-----
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-----N---AD-LKEATGVLLQACGHEKDIEIGKRVHELVSAST-----  127 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----  127 (311)
                      +..+|..+...+...| ++++|..+|+++.+     .   .| ....+..+...+...|++++|...++++. +.     
T Consensus        26 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~  103 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-AIREKTL  103 (311)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHh
Confidence            3456888999999999 99999999999887     1   12 24567888888999999999999999887 43     


Q ss_pred             -C-CCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC
Q 037178          128 -Q-FSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT  194 (311)
Q Consensus       128 -g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~  194 (311)
                       + .+....++..+...|...|++++|...|++..+          + ....|..+...+...|++++|.+.|++... .
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~  182 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE-I  182 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H
Confidence             2 233467888899999999999999999987642          1 345788999999999999999999999865 2


Q ss_pred             ------CCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh-------CCCCc-------HHHHHHHHHHHHhcCCHHH
Q 037178          195 ------ELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM-------GLIGD-------VFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       195 ------~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~-------~~~~~~li~~~~~~g~~~~  253 (311)
                            +..|+ ..++..+...+...|++++|.+.++++.+.       ...+.       ...+..+...+...+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence                  22333 357888899999999999999999998764       11221       2222333333444455555


Q ss_pred             HHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          254 MVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       254 A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |...++...+.   +..+|..+...|.+.|++++|.+.+++.
T Consensus       263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            55566655542   3467899999999999999999999987

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.33  E-value=6.9e-11  Score=91.97  Aligned_cols=155  Identities=12%  Similarity=0.030  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA  209 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~  209 (311)
                      .+|..|...|.+.|++++|.+.|++..   ..+..+|..+...|.+.|++++|...+++...   ..|+ ...+..+...
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHH
Confidence            344444444444444444444444432   12344444444444555555555554444433   1121 2233333444


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF  286 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~  286 (311)
                      +...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+   .+..+|..+...|.+.|++++|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            444445555555544444432 22344444445555555555555555544432   23334444555555555555555


Q ss_pred             HHHHhh
Q 037178          287 DLLIKM  292 (311)
Q Consensus       287 ~l~~~m  292 (311)
                      +.|++.
T Consensus       162 ~~~~~a  167 (184)
T 3vtx_A          162 KYFKKA  167 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=1.9e-11  Score=110.00  Aligned_cols=196  Identities=10%  Similarity=-0.007  Sum_probs=172.8

Q ss_pred             CCCcccHHHHHHHHHhcCCCH-HHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           60 STQGLHFLQEITTLCEESKSL-NKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~-~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      ..+...|..+-.++...| ++ ++|++.|++..+ .+.+...|..+...+...|++++|...|+... +..  |+...+.
T Consensus        99 ~~~a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~  174 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL-THC--KNKVSLQ  174 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTC--CCHHHHH
T ss_pred             chhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC--CCHHHHH
Confidence            346677888999999999 99 999999999998 66668899999999999999999999999998 554  6678889


Q ss_pred             HHHHHHHhc---------CChhHHHHHHHhcC---CCChHHHHHHHHHHHhC--------CChhhHHHHHHHhhhcCCCC
Q 037178          138 RLITMYSLC---------GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKN--------ELYTDVLSIFVELSSDTELK  197 (311)
Q Consensus       138 ~ll~~~~~~---------g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~  197 (311)
                      .+...|...         |++++|.+.|++..   ..+...|..+..+|...        |++++|.+.|++..+   +.
T Consensus       175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~  251 (474)
T 4abn_A          175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK---VD  251 (474)
T ss_dssp             HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---HC
T ss_pred             HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH---hC
Confidence            999999999         99999999999865   34788999999999998        999999999999977   34


Q ss_pred             C----CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          198 P----DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       198 p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      |    +...|..+..++...|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.+.++..
T Consensus       252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~  320 (474)
T 4abn_A          252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTKP  320 (474)
T ss_dssp             GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            5    56789999999999999999999999998876 45678899999999999999999998887753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=8.6e-12  Score=104.93  Aligned_cols=167  Identities=10%  Similarity=-0.012  Sum_probs=135.9

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-------CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-------
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSAST-------QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-------  161 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-------  161 (311)
                      +..++..+...+...|++++|..+++++. +.       ..+....++..+...|...|++++|...|++..+       
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            45678888889999999999999999988 53       3344567888899999999999999999987642       


Q ss_pred             ---C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-----CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh--
Q 037178          162 ---R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT-----ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM--  229 (311)
Q Consensus       162 ---~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--  229 (311)
                         + ....|..+...|...|++++|...|++..+..     +-.| ....+..+...+...|++++|.+++++..+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               1 34678999999999999999999999987511     2223 2456888889999999999999999998775  


Q ss_pred             ----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          230 ----GLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       230 ----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                          +..| ...++..+...|.+.|++++|.+.+++..+
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                2233 457888999999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=1.4e-10  Score=90.28  Aligned_cols=158  Identities=8%  Similarity=-0.079  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..+-..+.+.| ++++|++.|++..+ .+-+..++..+...+.+.|++++|...+.... ... +.+...+..+...+
T Consensus         7 iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            7 IYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV-VLD-TTSAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-chhHHHHHHHHHHH
Confidence            4555555555555 55555555555555 33344455555555555555555555555554 222 22333344444444


Q ss_pred             HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhH
Q 037178          144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a  219 (311)
                      ...++++.|...+++..   ..+...+..+...|.+.|++++|++.|++..+   +.|+ ..+|..+..++.+.|++++|
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCHHHH
Confidence            45555555555444432   12344444444444555555555555444433   1222 23344444444444444444


Q ss_pred             HHHHHHHHH
Q 037178          220 SGVHGMAAK  228 (311)
Q Consensus       220 ~~~~~~m~~  228 (311)
                      .+.+++..+
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=2.4e-10  Score=88.26  Aligned_cols=157  Identities=8%  Similarity=-0.059  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      ...+..+...+...|++++|...|+++.+   .+...|..+...+...|++++|...+++..+ . ...+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHH
Confidence            45667788888899999999999998774   3677889999999999999999999999876 3 12345678888889


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF  286 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~  286 (311)
                      +...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.+++..+   .+..+|..+...+...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999988875 55778889999999999999999999998764   45678899999999999999999


Q ss_pred             HHHHhh
Q 037178          287 DLLIKM  292 (311)
Q Consensus       287 ~l~~~m  292 (311)
                      +.+++.
T Consensus       165 ~~~~~~  170 (186)
T 3as5_A          165 PHFKKA  170 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999988

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=4.9e-10  Score=92.92  Aligned_cols=191  Identities=10%  Similarity=-0.035  Sum_probs=164.1

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNA  169 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~  169 (311)
                      .+..++..+...+...|++++|...|++.. +.   -+...+..+...|..    .|++++|...|++..+ .+...+..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~   79 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL   79 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            356677788888889999999999999998 53   345677778999999    9999999999998653 47788999


Q ss_pred             HHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178          170 LVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNAL  241 (311)
Q Consensus       170 li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  241 (311)
                      +...|..    .|++++|...|++..+ .+   +...+..+-..+..    .+++++|.+.+++..+.+   +...+..+
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            9999999    9999999999999987 54   67788888888888    999999999999999876   56788888


Q ss_pred             HHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCC
Q 037178          242 IAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       242 i~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g  298 (311)
                      ...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|.+.+++.  .+.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~  216 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA--CELE  216 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH--HHTT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH--HhCC
Confidence            889988    9999999999998775 456788889999999    99999999999998  5543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.27  E-value=3e-10  Score=87.69  Aligned_cols=161  Identities=9%  Similarity=-0.010  Sum_probs=110.5

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|...++.+. +.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            9 VYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL-ADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHH
Confidence            34667777788888 88888888888887 55566777778888888888888888888877 443 3455666667777


Q ss_pred             HHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          143 YSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      |...|++++|.+.|++..   ..+...|..+...+...|++++|.+.+++... .. ..+...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG-LR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-cC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777654   23556666667777777777777777776654 21 12345566666666666666666


Q ss_pred             HHHHHHHHHh
Q 037178          220 SGVHGMAAKM  229 (311)
Q Consensus       220 ~~~~~~m~~~  229 (311)
                      .+.++...+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            6666665543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.27  E-value=1.5e-11  Score=108.07  Aligned_cols=227  Identities=9%  Similarity=-0.094  Sum_probs=180.2

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc----C---CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----C-CCc
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH----N---ADLKEATGVLLQACGHEKDIEIGKRVHELVSAST----Q-FSN  131 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~----~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g-~~~  131 (311)
                      ..|..+...+...| ++++|...|++...    .   ......+..+...+...|++++|...++++. +.    + ...
T Consensus        87 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~  164 (411)
T 4a1s_A           87 AIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLS  164 (411)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHH
Confidence            46888999999999 99999999999876    1   1224567888888999999999999999877 33    1 123


Q ss_pred             hhhHHHHHHHHHHhcCC-----------------hhHHHHHHHhcCC-------C--ChHHHHHHHHHHHhCCChhhHHH
Q 037178          132 DFIINTRLITMYSLCGF-----------------PLDSRRVFDSLKT-------R--NLFQWNALVSGFTKNELYTDVLS  185 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~-----------------~~~A~~l~~~m~~-------~--~~~~y~~li~~~~~~g~~~~a~~  185 (311)
                      ...++..+...|...|+                 +++|.+.|++..+       +  ....|..+...|...|++++|..
T Consensus       165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (411)
T 4a1s_A          165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE  244 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            45578889999999999                 9999888877532       1  33578899999999999999999


Q ss_pred             HHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCC--C---CcHHHHHHHHHHHHhcCCHHHHHH
Q 037178          186 IFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGL--I---GDVFVSNALIAMYGKCAFVEEMVK  256 (311)
Q Consensus       186 ~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~---~~~~~~~~li~~~~~~g~~~~A~~  256 (311)
                      .|++..+...-.++    ..++..+...+...|++++|...+++..+..-  .   ....++..+...|.+.|++++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (411)
T 4a1s_A          245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE  324 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99987651111112    23788899999999999999999988765421  1   125788899999999999999999


Q ss_pred             HHhhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          257 LFEVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       257 ~~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+++..+     .+    ..+|..+...|...|++++|.+.+++.
T Consensus       325 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9998774     22    347888999999999999999999987

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.26  E-value=1.8e-11  Score=107.51  Aligned_cols=226  Identities=9%  Similarity=-0.060  Sum_probs=178.8

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----C-CCchhh
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLK----EATGVLLQACGHEKDIEIGKRVHELVSAST----Q-FSNDFI  134 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g-~~~~~~  134 (311)
                      .+..+-..+...| ++++|+..|+++.+ .+.+.    ..|..+...+...|++++|...+++.. +.    + .+....
T Consensus        50 ~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAG-DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-TLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhC-cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccCchHHHH
Confidence            4556677888999 99999999999998 43343    467888888999999999999999877 32    1 123456


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC---------CChHHHHHHHHHHHhCCC-----------------hhhHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT---------RNLFQWNALVSGFTKNEL-----------------YTDVLSIFV  188 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~~~~y~~li~~~~~~g~-----------------~~~a~~~~~  188 (311)
                      ++..+...|...|++++|...|++..+         ....+|..+...|...|+                 +++|.+.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            788899999999999999999987642         134578899999999999                 999999988


Q ss_pred             Hhhhc---CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC---C--CcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178          189 ELSSD---TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL---I--GDVFVSNALIAMYGKCAFVEEMVKLFE  259 (311)
Q Consensus       189 ~m~~~---~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~  259 (311)
                      +..+.   .+-.+ ...++..+...+...|++++|.+.+++..+..-   .  ....++..+...|...|++++|.+.++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            86430   11112 234788888999999999999999988765421   1  113488899999999999999999999


Q ss_pred             hCCC-----C----ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          260 VMPE-----R----NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       260 ~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +..+     .    ...+|..+...|...|++++|.+.+++.
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH  329 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8764     1    1467888999999999999999999987

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.26  E-value=2.8e-11  Score=102.49  Aligned_cols=228  Identities=10%  Similarity=-0.062  Sum_probs=178.2

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc----C--CC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCc---
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH----N--AD-LKEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSN---  131 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~----~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~---  131 (311)
                      ...|..+...+...| ++++|.+.+++...    .  .+ ...++..+...+...|++++|...+++.. +.. -..   
T Consensus        43 ~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~  120 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKV  120 (338)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHhcCch
Confidence            356888999999999 99999999998776    1  11 24567788888999999999999999876 321 111   


Q ss_pred             -hhhHHHHHHHHHHhcCC--------------------hhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChh
Q 037178          132 -DFIINTRLITMYSLCGF--------------------PLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       132 -~~~~~~~ll~~~~~~g~--------------------~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~  181 (311)
                       ...++..+...|...|+                    +++|.+.+++..+     .    ....|..+...+...|+++
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  200 (338)
T 3ro2_A          121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR  200 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence             14478889999999999                    9999888877532     1    2357888999999999999


Q ss_pred             hHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHHHHHHHHHHHHhcCCHH
Q 037178          182 DVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVFVSNALIAMYGKCAFVE  252 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~  252 (311)
                      +|.+.+++..+...-.++    ..++..+...+...|++++|...+++..+..    -.+ ...++..+...|...|+++
T Consensus       201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  280 (338)
T 3ro2_A          201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE  280 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence            999999987541111111    2378888899999999999999998876542    111 1567888999999999999


Q ss_pred             HHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          253 EMVKLFEVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       253 ~A~~~~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +|.+.+++..+     .+    ..+|..+...|.+.|++++|.+.+++.
T Consensus       281 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          281 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99999998764     22    347888999999999999999999998

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.25  E-value=4.5e-10  Score=98.01  Aligned_cols=211  Identities=9%  Similarity=0.030  Sum_probs=173.7

Q ss_pred             CCCcccHHHHHHHHHhcCCC-HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           60 STQGLHFLQEITTLCEESKS-LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~-~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      ..+...|+.+-.++...| + +++|+..|++... .+-+...|..+..++...|++++|...++.+. +.. +-+...|.
T Consensus       128 P~~~~a~~~~g~~l~~~g-~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal-~ld-P~~~~a~~  204 (382)
T 2h6f_A          128 AANYTVWHFRRVLLKSLQ-KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL-NQD-AKNYHAWQ  204 (382)
T ss_dssp             TTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-ccCHHHHH
Confidence            345678999999999999 8 9999999999999 66678899999999999999999999999999 655 55778899


Q ss_pred             HHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHh-CCChhhH-----HHHHHHhhhcCCCCCC-cchHHHHH
Q 037178          138 RLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTK-NELYTDV-----LSIFVELSSDTELKPD-NFTFPCVI  207 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~t~~~li  207 (311)
                      .+..++.+.|++++|...|+++.+   .+...|+.+..++.+ .|..++|     +..|++...   +.|+ ...|..+.
T Consensus       205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~  281 (382)
T 2h6f_A          205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLK  281 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHH
Confidence            999999999999999999999763   477899999999999 6776888     477888766   4565 45788888


Q ss_pred             HHHhccC--ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHhhC-CCCCh---hhHHHH
Q 037178          208 KACGGIA--DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA---------FVEEMVKLFEVM-PERNL---VSWNSI  272 (311)
Q Consensus       208 ~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~---~~y~~l  272 (311)
                      ..+.+.|  ++++|.+.+.++ +. -+.+...+..+.+.|.+.|         .+++|.++|+++ .+.|.   ..|.-+
T Consensus       282 ~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~  359 (382)
T 2h6f_A          282 GILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI  359 (382)
T ss_dssp             HHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            8888888  689999999887 33 3557789999999999874         369999999999 65444   356666


Q ss_pred             HHHHHh
Q 037178          273 ICGFSE  278 (311)
Q Consensus       273 i~~~~~  278 (311)
                      ...+..
T Consensus       360 ~~~l~~  365 (382)
T 2h6f_A          360 GRSLQS  365 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.25  E-value=5.1e-11  Score=104.07  Aligned_cols=127  Identities=9%  Similarity=-0.095  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVF  236 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~  236 (311)
                      +|..+...|...|++++|...+++..+...-.++    ..++..+...+...|++++|...+++..+..    -.+ ...
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  268 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  268 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence            4445555555555555555555554330000111    1144444455555555555555555443221    000 133


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCCC---C------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVMPER---N------LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~------~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ++..+...|.+.|++++|.+.+++..+.   .      ..+|..+...|...|++++|.+.+++.
T Consensus       269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4445555555555555555555555442   1      124444555555555555555555555

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.24  E-value=3.5e-11  Score=105.07  Aligned_cols=198  Identities=10%  Similarity=-0.104  Sum_probs=106.5

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCC--------------------hhHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKD--------------------IEIGK  117 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~  117 (311)
                      +|..+...+...| ++++|...+++...   ..++    ..++..+...+...|+                    +++|.
T Consensus        89 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           89 ASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            4555555555666 66666666665554   1111    2245555555555666                    66666


Q ss_pred             HHHHHHHhh---cCCC-chhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHH
Q 037178          118 RVHELVSAS---TQFS-NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVL  184 (311)
Q Consensus       118 ~~~~~m~~~---~g~~-~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~  184 (311)
                      ..++...+.   .+-. ....++..+...|...|++++|...|++..+     ++    ..+|..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            655554311   1111 1123455566666666666666666655431     11    235666666666677777777


Q ss_pred             HHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHHHHHHHHHHHHhcCCHHHHH
Q 037178          185 SIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       185 ~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      ..+++......-.++    ..++..+...+...|++++|...+++..+..    -.+ ...++..+...|.+.|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            766665431100111    2355566666666677777766666654431    011 1445666666666667777777


Q ss_pred             HHHhhCCC
Q 037178          256 KLFEVMPE  263 (311)
Q Consensus       256 ~~~~~m~~  263 (311)
                      +.+++..+
T Consensus       328 ~~~~~al~  335 (406)
T 3sf4_A          328 HFAEKHLE  335 (406)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.22  E-value=1e-09  Score=92.90  Aligned_cols=196  Identities=7%  Similarity=-0.087  Sum_probs=158.4

Q ss_pred             CCcccHHHHHHHHH-------hcCCCH-------HHHHHHHHhhcc-CCCC-hhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           61 TQGLHFLQEITTLC-------EESKSL-------NKALSLLQENLH-NADL-KEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        61 ~~~~~~~~li~~~~-------~~g~~~-------~~a~~~~~~m~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      .+...|..+...+.       +.| ++       ++|..+|++... +.|+ ...|..+...+.+.|++++|..+|+++.
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  126 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL  126 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhcc-chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            35556777777765       357 75       999999999998 6665 4588999999999999999999999998


Q ss_pred             hhcCCCch-hh-HHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHH-hCCChhhHHHHHHHhhhcCCCCC
Q 037178          125 ASTQFSND-FI-INTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFT-KNELYTDVLSIFVELSSDTELKP  198 (311)
Q Consensus       125 ~~~g~~~~-~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~p  198 (311)
                       +.  .|+ .. +|..+...+.+.|++++|.++|++..+   .+...|........ ..|++++|..+|++..+   ..|
T Consensus       127 -~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~---~~p  200 (308)
T 2ond_A          127 -AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYG  200 (308)
T ss_dssp             -TS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH---HHT
T ss_pred             -hc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCC
Confidence             53  443 33 899999999999999999999998764   24455554433322 37999999999999876   234


Q ss_pred             -CcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          199 -DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG-LIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       199 -~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                       +...|..++..+.+.|++++|..+|++..+.. ++|  ....|..++..+.+.|+.++|..+++++.+
T Consensus       201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             45778888999999999999999999999873 455  467899999999999999999999998774

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.21  E-value=2.5e-10  Score=96.54  Aligned_cols=226  Identities=10%  Similarity=-0.031  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhh---cCCC-chhhHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAS---TQFS-NDFIIN  136 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~-~~~~~~  136 (311)
                      +...-..+...| ++++|...|+++.. .+.+    ...+..+...+...|++++|...+++..+.   .+-. ....++
T Consensus         8 l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            8 LALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            445566788899 99999999999988 4334    356788888999999999999999987621   1212 235678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCC--------------------hhhHHHHH
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNEL--------------------YTDVLSIF  187 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~--------------------~~~a~~~~  187 (311)
                      ..+...|...|++++|...|++..+     .+    ..+|..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            8899999999999999999988642     22    3478899999999999                    99999998


Q ss_pred             HHhhhc---CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037178          188 VELSSD---TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLI-GDVFVSNALIAMYGKCAFVEEMVKLF  258 (311)
Q Consensus       188 ~~m~~~---~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~  258 (311)
                      ++....   .+..+ ...++..+...+...|++++|...+++..+.    +.. ....++..+...|...|++++|.+.+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            876430   11112 1346888888999999999999999887654    211 12348888999999999999999999


Q ss_pred             hhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          259 EVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       259 ~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ++..+     .+    ..++..+...|...|++++|.+.+++.
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            98764     22    457888999999999999999999887

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1e-09  Score=95.72  Aligned_cols=224  Identities=8%  Similarity=-0.070  Sum_probs=174.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC-----CchhhHH
Q 037178           69 EITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQF-----SNDFIIN  136 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-----~~~~~~~  136 (311)
                      .-..+...| ++++|+..|++...   ..+|    ..++..+...+...|+.+.|...+++..+-..-     .....++
T Consensus       109 ~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          109 RGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            344566789 99999999999887   2233    356888888999999999999999988722111     1124578


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCC-CcchH
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKP-DNFTF  203 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~t~  203 (311)
                      +.+...|...|++++|...|++..+     ++    ..+|..+...|...|++++|.+.|++..+-   .+..| ...++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            8899999999999999999987652     12    247889999999999999999999887540   13323 34678


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHh----CCCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCC--ChhhHHHHHH
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAKM----GLIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPER--NLVSWNSIIC  274 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~--~~~~y~~li~  274 (311)
                      ..+...+.+.|++++|...+++..+.    +-+.....+..+...|...|+   +++|..++++....  ....+..+..
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            89999999999999999999887654    222233446778888999999   99999999998652  2347788999


Q ss_pred             HHHhCCCcchHHHHHHhhh
Q 037178          275 GFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       275 ~~~~~g~~~~a~~l~~~m~  293 (311)
                      .|...|++++|.+.+++..
T Consensus       348 ~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999884

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.21  E-value=3.7e-10  Score=106.22  Aligned_cols=157  Identities=9%  Similarity=-0.014  Sum_probs=112.2

Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcC--C-CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHH
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLK--T-RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVI  207 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li  207 (311)
                      +...|+.|-..|.+.|++++|.+.|++..  . .+..+|+.+..+|.+.|++++|.+.|++..+   +.|+ ...|..+-
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            45567777777777777777777777654  2 3566777777777777777777777777665   4454 45677777


Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~  284 (311)
                      .++.+.|++++|.+.+++..+.. +-+...|+.+...|.+.|++++|.+.|++..+  | +...|..+...|...|++++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            77777777777777777777664 34567777777777777888877777777663  3 44677777777777787777


Q ss_pred             HHHHHHhh
Q 037178          285 SFDLLIKM  292 (311)
Q Consensus       285 a~~l~~~m  292 (311)
                      |.+.+++.
T Consensus       164 A~~~~~ka  171 (723)
T 4gyw_A          164 YDERMKKL  171 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=1.2e-09  Score=99.60  Aligned_cols=207  Identities=10%  Similarity=-0.030  Sum_probs=167.0

Q ss_pred             HHHHHHHHhhcc-CCCChhhHHHHHHhccc-------CCChh-------HHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           81 NKALSLLQENLH-NADLKEATGVLLQACGH-------EKDIE-------IGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      ++|..+|++... .+.+...|......+.+       .|+++       +|..+++... +.-.+.+...|..+...+.+
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHh
Confidence            477889999888 66678888888888775       79987       8999999988 42234468889999999999


Q ss_pred             cCChhHHHHHHHhcC--CC-Ch-HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH-HhccCChhhH
Q 037178          146 CGFPLDSRRVFDSLK--TR-NL-FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA-CGGIADVGFG  219 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~--~~-~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~-~~~~g~~~~a  219 (311)
                      .|++++|..+|++..  .| +. ..|...+..+.+.|+.++|.++|++..+ .  .|+ ...|...... +...|+.++|
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~--~~~~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--cCCchHHHHHHHHHHHHHcCChhHH
Confidence            999999999999875  34 33 5899999999999999999999999876 3  333 2223222212 3368999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-N----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+|+...+.. +-+...|..+++.+.+.|+.++|..+|++..+  | +    ...|...+......|+.+.+.++.+++
T Consensus       411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999988764 45689999999999999999999999998864  2 2    338989999999999999999999988

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=2.5e-10  Score=94.32  Aligned_cols=212  Identities=9%  Similarity=-0.062  Sum_probs=142.9

Q ss_pred             CHHHHHHHHHhhcc--------C-CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc------CC-CchhhHHHHHHHH
Q 037178           79 SLNKALSLLQENLH--------N-ADLKEATGVLLQACGHEKDIEIGKRVHELVSAST------QF-SNDFIINTRLITM  142 (311)
Q Consensus        79 ~~~~a~~~~~~m~~--------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------g~-~~~~~~~~~ll~~  142 (311)
                      ++++|+.+|++..+        . +....++..+...+...|++++|...++++. +.      +- +....++..+...
T Consensus        16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHH
Confidence            55555555555544        1 2235567788888888999999998888877 33      22 3345678888899


Q ss_pred             HHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC------CCCC-CcchHH
Q 037178          143 YSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT------ELKP-DNFTFP  204 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~p-~~~t~~  204 (311)
                      |...|++++|.+.|++..+          + ...+|..+...|...|++++|...|++... .      +-.| ...++.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHH
Confidence            9999999999888887542          1 346788889999999999999999988865 2      1123 245788


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHh-------CCCC-cHHHHHHHHHHHHhcC------CHHHHHHHHhhCCCC---Chh
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKM-------GLIG-DVFVSNALIAMYGKCA------FVEEMVKLFEVMPER---NLV  267 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~---~~~  267 (311)
                      .+...+...|++++|..++++..+.       ...+ ....+..+...+...+      .+.++...++.....   ...
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT  253 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            8888999999999999999888764       1122 2333444444443322      244445555554432   235


Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          268 SWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       268 ~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +|..+...|...|++++|.+++++.
T Consensus       254 ~~~~la~~~~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          254 TLRSLGALYRRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7888999999999999999999887

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=5e-10  Score=105.33  Aligned_cols=161  Identities=8%  Similarity=-0.037  Sum_probs=141.8

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +..+|+.|-..+.+.| ++++|++.|++..+ .+-+..+|..+..++.+.|++++|...|++.. +.. +-+...|+.|.
T Consensus         8 ~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI-RIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence            3457899999999999 99999999999999 55567889999999999999999999999998 654 34577889999


Q ss_pred             HHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~  216 (311)
                      .+|.+.|++++|.+.|++..   ..+..+|+.+..+|.+.|++++|++.|++..+   +.|+ ...+..+..++...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccH
Confidence            99999999999999999865   34778999999999999999999999999877   5675 56889999999999999


Q ss_pred             hhHHHHHHHHHH
Q 037178          217 GFGSGVHGMAAK  228 (311)
Q Consensus       217 ~~a~~~~~~m~~  228 (311)
                      ++|.+.+++..+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.18  E-value=3.4e-09  Score=103.43  Aligned_cols=203  Identities=9%  Similarity=-0.002  Sum_probs=143.4

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      +..+|..+-.++...| ++++|++.|.+.    .|...|..++.+|.+.|++++|.+.+...+ +..  ++....+.+..
T Consensus      1104 ~p~vWsqLAKAql~~G-~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIF 1175 (1630)
T ss_pred             CHHHHHHHHHHHHhCC-CHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHHH
Confidence            3456888888888888 999999988775    367788888999999999999999988877 443  44334445888


Q ss_pred             HHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHH
Q 037178          142 MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSG  221 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~  221 (311)
                      +|++.+++++.....   ..++...|..+...|...|++++|..+|....          .|..+...+++.|++++|.+
T Consensus      1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHH
Confidence            888888888644443   45566777788888888888888888887752          58888888888888888888


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+++.      .+..+|..+-.+|...|++..|...... ...+...+..++..|-+.|.+++|+.+++.-
T Consensus      1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            87654      2345555555555555555555555543 2233444555666666666666666666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=5e-09  Score=91.18  Aligned_cols=221  Identities=8%  Similarity=-0.107  Sum_probs=171.7

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc---C-CCc-hhhHHHH
Q 037178           71 TTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAST---Q-FSN-DFIINTR  138 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---g-~~~-~~~~~~~  138 (311)
                      ..+...| ++++|+..|++...   ..+|    ..++..+...+...|+++.|...+++..+-.   + ..+ ...+++.
T Consensus       109 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          109 MYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3456788 99999999999887   2233    3467788888999999999999999877221   1 111 2557888


Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCCCcchHHHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKPDNFTFPCV  206 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~~~t~~~l  206 (311)
                      +..+|...|++++|.+.|++..+     +    ...+++.+...|...|++++|.+.|++...-   .+......++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            99999999999999999887542     1    2357889999999999999999999887540   1222235678888


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCC-C-hhhHHHHHHHHH
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMG----LIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPER-N-LVSWNSIICGFS  277 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~-~~~y~~li~~~~  277 (311)
                      ...+.+.|++++|...+++..+..    -+.....+..+-..|...|+   +++|...+++.... + ...+..+...|.
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~  347 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE  347 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            999999999999999999988753    22334566777778888888   99999999986542 2 246778999999


Q ss_pred             hCCCcchHHHHHHhh
Q 037178          278 ENGFSCESFDLLIKM  292 (311)
Q Consensus       278 ~~g~~~~a~~l~~~m  292 (311)
                      ..|++++|.+.|++.
T Consensus       348 ~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          348 SSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            999999999999887

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.12  E-value=4.7e-10  Score=92.65  Aligned_cols=155  Identities=9%  Similarity=-0.014  Sum_probs=122.3

Q ss_pred             ccCCChhHHHHHHHHHHhh------cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHH
Q 037178          108 GHEKDIEIGKRVHELVSAS------TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNAL  170 (311)
Q Consensus       108 ~~~~~~~~a~~~~~~m~~~------~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~l  170 (311)
                      ...|++++|...+++..+.      ...+....++..+...|...|++++|...|++..+          + ...+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567888888887777621      12233567888999999999999999999987641          1 34679999


Q ss_pred             HHHHHhCCChhhHHHHHHHhhhcC------CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh------C-CCCcHH
Q 037178          171 VSGFTKNELYTDVLSIFVELSSDT------ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM------G-LIGDVF  236 (311)
Q Consensus       171 i~~~~~~g~~~~a~~~~~~m~~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~  236 (311)
                      ...|...|++++|...|++... .      .-.| ...++..+...+...|++++|...+++..+.      + .+....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999999865 2      1123 3567888999999999999999999998876      2 122467


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ++..+...|.+.|++++|.+.+++..+
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999999999999988763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.11  E-value=3.1e-08  Score=89.26  Aligned_cols=222  Identities=9%  Similarity=-0.019  Sum_probs=140.1

Q ss_pred             CcccHHHHHHHHHh----cCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchh
Q 037178           62 QGLHFLQEITTLCE----ESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDF  133 (311)
Q Consensus        62 ~~~~~~~li~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~  133 (311)
                      +...+..|-..|..    .+ ++++|+..|++..+ ..+...+..+...+..    .++.++|...|+... +.|   +.
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~  147 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQG---RD  147 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CH
Confidence            44556666666666    66 77777777776655 1244455555555554    567777777777766 443   34


Q ss_pred             hHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178          134 IINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFP  204 (311)
Q Consensus       134 ~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~  204 (311)
                      ..+..|-..|..    .++.++|.+.|++..+ .+...+..+...|..    .++.++|.+.|++..+ .|   +...+.
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~  223 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQL  223 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHH
Confidence            445556666665    5677777777766542 356666666666666    6777777777777665 33   344555


Q ss_pred             HHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 037178          205 CVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICG  275 (311)
Q Consensus       205 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~  275 (311)
                      .+...+..    .++.++|.++++...+.|   +...+..+...|..    .++.++|.+.|++..+ -+...+..+-..
T Consensus       224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~  300 (490)
T 2xm6_A          224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL  300 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555554    567777777777766654   34555566666666    6777777777777654 345566667777


Q ss_pred             HHhC-----CCcchHHHHHHhhhhccCC
Q 037178          276 FSEN-----GFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       276 ~~~~-----g~~~~a~~l~~~m~~~~~g  298 (311)
                      |...     ++.++|.+++++.  .+.|
T Consensus       301 y~~~~~g~~~~~~~A~~~~~~a--~~~~  326 (490)
T 2xm6_A          301 YDKGAEGVAKNREQAISWYTKS--AEQG  326 (490)
T ss_dssp             HHHCBTTBCCCHHHHHHHHHHH--HHTT
T ss_pred             HHcCCCCCcCCHHHHHHHHHHH--HhcC
Confidence            7776     7777777777777  4443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.09  E-value=1.1e-08  Score=82.19  Aligned_cols=188  Identities=7%  Similarity=-0.096  Sum_probs=143.7

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CC-CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NA-DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      |...|...-..+...| ++++|+..|++... .+ ++...+..+..++...|++++|...++... +.. +.+..++..+
T Consensus         6 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKN-YNLANAYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT-CSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhC-cchHHHHHHH
Confidence            3456778888899999 99999999999998 55 788888888889999999999999999998 554 4467788889


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC--C-Ch-------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cchHHHH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT--R-NL-------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NFTFPCV  206 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~--~-~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~t~~~l  206 (311)
                      ..+|.+.|++++|...|++..+  | +.       ..|..+...+...|++++|.+.|++..+   ..|+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence            9999999999999999998752  3 44       4588888899999999999999999976   4665   3456666


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..++...|     ..+++.+...+ ..+...|.....  ...+.+++|...|++..+
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence            66665544     33444444443 223444444432  345668889888888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.09  E-value=3e-08  Score=85.84  Aligned_cols=219  Identities=8%  Similarity=-0.070  Sum_probs=125.4

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCCCh-h----hHHHHHHhcccCCChhHHHHHHHHHHhhc----CCC-chhhHHHHH
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NADLK-E----ATGVLLQACGHEKDIEIGKRVHELVSAST----QFS-NDFIINTRL  139 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~-~~~~~~~~l  139 (311)
                      ..+...| ++++|...+++... .+++. .    .+..+...+...|++++|...+++.. ..    |.. ....+++.+
T Consensus        22 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           22 QVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHH
Confidence            3444566 77777777777665 32221 1    34444555666777777777777665 21    100 012234556


Q ss_pred             HHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC--CC--CcchHH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL--KP--DNFTFP  204 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~t~~  204 (311)
                      ...+...|++++|...+++..+          + ....+..+...+...|++++|...+++... ..-  .+  ...++.
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHH
Confidence            6667777777777777665431          1 123455666677777777777777776543 111  11  123455


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhCCCCc-HHHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCh-------hhHHH
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKMGLIGD-VFVSN-----ALIAMYGKCAFVEEMVKLFEVMPERNL-------VSWNS  271 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~y~~  271 (311)
                      .+...+...|++++|...+++..+..-.++ ...+.     ..+..+...|++++|...+++..+++.       ..+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            666667777777777777777654311111 01111     223346677777777777777765321       13456


Q ss_pred             HHHHHHhCCCcchHHHHHHhh
Q 037178          272 IICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       272 li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +...+...|++++|.+.+++.
T Consensus       259 la~~~~~~g~~~~A~~~l~~a  279 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEEL  279 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            666777777777777777665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.06  E-value=3.8e-09  Score=76.69  Aligned_cols=123  Identities=13%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |..+...+...| ++++|..+|+++.. .+.+...+..+...+...|++++|...++++. +.+ +.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC-CCchHHHHHHHHHHH
Confidence            455555666666 66666666666655 43445555555555556666666666666655 332 223444445555555


Q ss_pred             hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      +.|++++|.+.|+++.   ..+...|..+...+.+.|++++|...|+++.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5555555555555443   1234445555555555555555555555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.06  E-value=2.3e-08  Score=97.72  Aligned_cols=196  Identities=8%  Similarity=0.008  Sum_probs=152.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      ...+-..+...| .+++|..+|++...   .....+.++.   ..+++++|.++.++..       +..+|..+-.++.+
T Consensus      1052 ~~eIA~Iai~lg-lyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A         1052 APDIANIAISNE-LFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHh
Confidence            344566777888 99999999998653   2223333433   5678888888887653       36677789999999


Q ss_pred             cCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHH
Q 037178          146 CGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGM  225 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  225 (311)
                      .|++++|.+.|.+-  .|...|..++.++.+.|++++|.+.+...++ .  .++....+.++.+|++.+++++...+.. 
T Consensus      1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rleele~fI~- 1191 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN- 1191 (1630)
T ss_pred             CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHHHHHHHh-
Confidence            99999999999764  6777888999999999999999999987765 3  3554445568999999988886554431 


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          226 AAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       226 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                            .++...|..+.+.|...|++++|...|...     ..|..+..+|++.|++++|.+.+++.
T Consensus      1192 ------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1192 ------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                  345566777888999999999999999985     47888999999999999999988877

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.05  E-value=5.8e-08  Score=87.53  Aligned_cols=218  Identities=11%  Similarity=-0.021  Sum_probs=117.1

Q ss_pred             CcccHHHHHHHHHh----cCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchh
Q 037178           62 QGLHFLQEITTLCE----ESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDF  133 (311)
Q Consensus        62 ~~~~~~~li~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~  133 (311)
                      +...+..+-..|..    .+ ++++|+..|++..+. .+...+..+...+..    .++.++|...|+... +.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CH
Confidence            33444445555555    55 666666666655441 234444444444444    556666666666655 433   33


Q ss_pred             hHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178          134 IINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFP  204 (311)
Q Consensus       134 ~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~  204 (311)
                      ..+..|-..|..    .+++++|.+.|++..+ .+...+..+...|..    .++.++|.+.|++..+ .|   +...+.
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a~~  187 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWSCN  187 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence            344445555555    5566666666655442 244555555555554    5566666666666554 32   344455


Q ss_pred             HHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 037178          205 CVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICG  275 (311)
Q Consensus       205 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~  275 (311)
                      .+-..+..    .++.++|.+++....+.|   +...+..+...|..    .+++++|.+.|++..+ .+...+..+-..
T Consensus       188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  264 (490)
T 2xm6_A          188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555544    556666666666655544   34455555555554    5566666666665543 334445555555


Q ss_pred             HHh----CCCcchHHHHHHhh
Q 037178          276 FSE----NGFSCESFDLLIKM  292 (311)
Q Consensus       276 ~~~----~g~~~~a~~l~~~m  292 (311)
                      |..    .++.++|.++|++.
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHH
Confidence            555    55666666666655

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=4.9e-09  Score=88.03  Aligned_cols=196  Identities=7%  Similarity=-0.066  Sum_probs=133.5

Q ss_pred             HHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCch-hhHHHHHHHHHHhcCChhHHHH
Q 037178           80 LNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAST----QFSND-FIINTRLITMYSLCGFPLDSRR  154 (311)
Q Consensus        80 ~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~  154 (311)
                      +++|...|++.             ...+...|++++|...|++.. +.    |-.++ ..+|+.+..+|.+.|++++|..
T Consensus        33 ~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   98 (292)
T 1qqe_A           33 FEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD   98 (292)
T ss_dssp             HHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            66666666554             334456677777777777665 32    21122 4577777888888888888877


Q ss_pred             HHHhcCC-----CC----hHHHHHHHHHHHhC-CChhhHHHHHHHhhhcCCCCCC-------cchHHHHHHHHhccCChh
Q 037178          155 VFDSLKT-----RN----LFQWNALVSGFTKN-ELYTDVLSIFVELSSDTELKPD-------NFTFPCVIKACGGIADVG  217 (311)
Q Consensus       155 l~~~m~~-----~~----~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-------~~t~~~li~~~~~~g~~~  217 (311)
                      .|++..+     .+    ..+|+.+...|... |++++|+..|++..+   +.|+       ..++..+...+.+.|+++
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE---WYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---HHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            7766542     11    35688888888886 999999998888754   1121       246778888899999999


Q ss_pred             hHHHHHHHHHHhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh------hHHHHHHHHH--hCCC
Q 037178          218 FGSGVHGMAAKMGLIGDV------FVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLV------SWNSIICGFS--ENGF  281 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~------~y~~li~~~~--~~g~  281 (311)
                      +|...+++..+.......      ..|..+..+|...|++++|...|++..+  |+..      .+..++.+|.  ..++
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            999999988876433222      2567788888999999999999998875  3221      2444566664  3567


Q ss_pred             cchHHHHHHhh
Q 037178          282 SCESFDLLIKM  292 (311)
Q Consensus       282 ~~~a~~l~~~m  292 (311)
                      +++|++.|+++
T Consensus       256 ~~~A~~~~~~~  266 (292)
T 1qqe_A          256 LSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHhccC
Confidence            88888888776

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.02  E-value=4.7e-09  Score=76.21  Aligned_cols=124  Identities=14%  Similarity=0.123  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY  245 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  245 (311)
                      .|..+...+...|++++|..+|+++.. .. ..+...+..+...+...|++++|..+++++.+.+ +.+...+..+...|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            345555555566666666666666544 21 1233445555556666666666666666665554 33455566666666


Q ss_pred             HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          246 GKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       246 ~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+.|++++|.+.++++.+   .+..+|..+...+.+.|++++|.+.++++
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            666666666666665542   23455666666666666777776666666

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.01  E-value=2.5e-08  Score=83.68  Aligned_cols=198  Identities=9%  Similarity=-0.101  Sum_probs=150.5

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc----C-CC--ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC---Cc--h
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH----N-AD--LKEATGVLLQACGHEKDIEIGKRVHELVSASTQF---SN--D  132 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~----~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~---~~--~  132 (311)
                      .|+.....|...| ++++|...|++...    . .+  ...+|+.+...+...|++++|...+++.. +...   .+  -
T Consensus        39 ~~~~a~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~  116 (292)
T 1qqe_A           39 LCVQAATIYRLRK-ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRG  116 (292)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHH
Confidence            5777788888999 99999999998877    1 11  14678899999999999999999999887 3211   11  1


Q ss_pred             hhHHHHHHHHHHhc-CChhHHHHHHHhcCC--C---C----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178          133 FIINTRLITMYSLC-GFPLDSRRVFDSLKT--R---N----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-  201 (311)
Q Consensus       133 ~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~--~---~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-  201 (311)
                      ..+++.+...|... |++++|...|++..+  |   +    ..+|+.+...+.+.|++++|...|++... ........ 
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~  195 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK-SSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTSSCTTTG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcCCccc
Confidence            45788899999996 999999999988652  1   1    35789999999999999999999999877 33222221 


Q ss_pred             -----hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc------HHHHHHHHHHHH--hcCCHHHHHHHHhhCCCCChh
Q 037178          202 -----TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD------VFVSNALIAMYG--KCAFVEEMVKLFEVMPERNLV  267 (311)
Q Consensus       202 -----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~  267 (311)
                           .|..+..++...|++++|...+++..+.  .|+      ...+..++..|.  ..+++++|.+.|+++.+.|..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence                 4677788889999999999999987653  222      223455666665  457899999999999876553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=3.4e-08  Score=88.15  Aligned_cols=225  Identities=10%  Similarity=-0.041  Sum_probs=137.5

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc---------CCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH---------NAD-LKEATGVLLQACGHEKDIEIGKRVHELVSAST----  127 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----  127 (311)
                      .+..||.|-..+...| ++++|++.|++..+         ..| ...+|+.+..+|...|++++|...+++.. +.    
T Consensus        50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~-~i~~~~  127 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK-HVCEKF  127 (472)
T ss_dssp             CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhHhc
Confidence            3456888888999999 99999999988754         122 34678888888999999999999888776 31    


Q ss_pred             -C-CC-chhhHHHHHHHHHHhc--CChhHHHHHHHhcC--CC-ChHHHHHHHHH---HHhCCChhhHHHHHHHhhhcCCC
Q 037178          128 -Q-FS-NDFIINTRLITMYSLC--GFPLDSRRVFDSLK--TR-NLFQWNALVSG---FTKNELYTDVLSIFVELSSDTEL  196 (311)
Q Consensus       128 -g-~~-~~~~~~~~ll~~~~~~--g~~~~A~~l~~~m~--~~-~~~~y~~li~~---~~~~g~~~~a~~~~~~m~~~~~~  196 (311)
                       + .. ....+++.+..++.+.  +++++|...|++..  .| +...+..+..+   +...|+.++|++.+++..+   +
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l  204 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L  204 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence             1 11 1234555555555554  46888999888754  23 44444444333   3345666667776666544   2


Q ss_pred             CCC-cchHHHHHHHHh----ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 037178          197 KPD-NFTFPCVIKACG----GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------  263 (311)
Q Consensus       197 ~p~-~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------  263 (311)
                      .|+ ...+..+...+.    ..|+.++|.+.+++..+.. +.+..++..+...|.+.|++++|...+++..+        
T Consensus       205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  283 (472)
T 4g1t_A          205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL  283 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence            333 223333332222    2345566666666655554 33455566666666666666666665554331        


Q ss_pred             ------------------------------------------------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          264 ------------------------------------------------RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       264 ------------------------------------------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                                                                      .+..+|..+...|...|++++|.+.|++.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence                                                            12334556667777888888888888887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.00  E-value=1.1e-08  Score=82.28  Aligned_cols=187  Identities=7%  Similarity=-0.089  Sum_probs=131.5

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALV  171 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li  171 (311)
                      .|+..+......+...|++++|...|+... +..-+++...+..+..+|.+.|++++|.+.|++..+  | +...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            456677777888888899999999999888 655335666666688888888999999888887642  3 556788888


Q ss_pred             HHHHhCCChhhHHHHHHHhhhcCCCCCCc--------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHH
Q 037178          172 SGFTKNELYTDVLSIFVELSSDTELKPDN--------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNAL  241 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l  241 (311)
                      ..|...|++++|...|++..+   ..|+.        ..|..+-..+...|++++|.+.++...+.. +-  +...|..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence            888889999999999888866   34442        346666777788888888888888877653 33  35677777


Q ss_pred             HHHHHhcCCH--HHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          242 IAMYGKCAFV--EEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       242 i~~~~~~g~~--~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...|...|+.  ++|.    .+...+...|....  ....+.+++|...+++.
T Consensus       160 ~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a  206 (228)
T 4i17_A          160 GVLFYNNGADVLRKAT----PLASSNKEKYASEK--AKADAAFKKAVDYLGEA  206 (228)
T ss_dssp             HHHHHHHHHHHHHHHG----GGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----hcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            7777665543  2222    12223344443333  22345578899999888

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.98  E-value=1.1e-08  Score=88.52  Aligned_cols=226  Identities=10%  Similarity=-0.083  Sum_probs=165.7

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhh---cCCC--c-
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH---NADLK----EATGVLLQACGHEKDIEIGKRVHELVSAS---TQFS--N-  131 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~--~-  131 (311)
                      .++.+-..+...| ++++|...+++...   ...+.    .++..+...+...|++++|...+++..+.   .+..  | 
T Consensus        55 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           55 ATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            4667777888899 99999999999887   22222    23556677788999999999999987722   1222  3 


Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-ch
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT--R------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FT  202 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t  202 (311)
                      ....+..+...|...|++++|...+++..+  +      ...+|..+...+...|++++|...+++... ..-.++. ..
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~-~~~~~~~~~~  212 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSD  212 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhccCcchh
Confidence            345667788899999999999999987531  1      235688889999999999999999998765 2112221 12


Q ss_pred             HH-----HHHHHHhccCChhhHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C---Ch
Q 037178          203 FP-----CVIKACGGIADVGFGSGVHGMAAKMGLIG---DVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----R---NL  266 (311)
Q Consensus       203 ~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~---~~  266 (311)
                      +.     ..+..+...|++++|...+....+....+   ....+..+...+...|++++|...+++..+     .   +.
T Consensus       213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~  292 (373)
T 1hz4_A          213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL  292 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence            22     23344778999999999998876543211   133567888999999999999999988753     1   12


Q ss_pred             -hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          267 -VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       267 -~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                       .++..+..++...|+.++|...+++.
T Consensus       293 ~~~~~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          293 NRNLLLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence             26667788899999999999999887

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.96  E-value=2.6e-08  Score=93.53  Aligned_cols=168  Identities=9%  Similarity=-0.079  Sum_probs=139.4

Q ss_pred             ccCCChhHHHHHHHHHHhh-------cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhC
Q 037178          108 GHEKDIEIGKRVHELVSAS-------TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKN  177 (311)
Q Consensus       108 ~~~~~~~~a~~~~~~m~~~-------~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~  177 (311)
                      ...|++++|.+.+++.. .       ...+.+...+..+..+|.+.|++++|.+.|++..+   .+...|..+..++.+.
T Consensus       402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            78899999999999886 2       22244567788899999999999999999998763   4778999999999999


Q ss_pred             CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178          178 ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK  256 (311)
Q Consensus       178 g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  256 (311)
                      |++++|.+.|++..+   ..|+ ...|..+..++.+.|++++ .+.+++..+.. +-+...|..+..+|.+.|++++|.+
T Consensus       481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999876   4564 5678889999999999999 99999998876 5578899999999999999999999


Q ss_pred             HHhhCCC--CC-hhhHHHHHHHHHhCCC
Q 037178          257 LFEVMPE--RN-LVSWNSIICGFSENGF  281 (311)
Q Consensus       257 ~~~~m~~--~~-~~~y~~li~~~~~~g~  281 (311)
                      .|++..+  |+ ...|..+..++...|+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999986  43 4577777788766555

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.94  E-value=5e-08  Score=88.84  Aligned_cols=195  Identities=7%  Similarity=-0.048  Sum_probs=154.5

Q ss_pred             CcccHHHHHHHHHh-------cCCCHH-------HHHHHHHhhcc-CCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHh
Q 037178           62 QGLHFLQEITTLCE-------ESKSLN-------KALSLLQENLH-NAD-LKEATGVLLQACGHEKDIEIGKRVHELVSA  125 (311)
Q Consensus        62 ~~~~~~~li~~~~~-------~g~~~~-------~a~~~~~~m~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  125 (311)
                      +...|......+.+       .| +++       +|..+|++..+ ..| +...|..++..+.+.|++++|..+|+.+. 
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al-  348 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-  348 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Confidence            45567777777765       68 877       99999999997 545 57788899999999999999999999998 


Q ss_pred             hcCCCch--hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHH-HHHhCCChhhHHHHHHHhhhcCCCCC-
Q 037178          126 STQFSND--FIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVS-GFTKNELYTDVLSIFVELSSDTELKP-  198 (311)
Q Consensus       126 ~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~p-  198 (311)
                      +.  .|+  ..+|..++..+.+.|++++|.++|++..+  | +...|..... .+...|+.++|..+|++..+   ..| 
T Consensus       349 ~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~  423 (530)
T 2ooe_A          349 AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGD  423 (530)
T ss_dssp             HS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTT
T ss_pred             Cc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCC
Confidence            54  343  35899999999999999999999998754  2 2233332222 23468999999999999876   235 


Q ss_pred             CcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          199 DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG-LIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       199 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +...|..++..+.+.|+.++|..+|++....+ ..|+  ..+|...+....+.|+.+.+.++++++.+
T Consensus       424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46788899999999999999999999998874 2332  45888889999999999999999988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=1.8e-08  Score=94.62  Aligned_cols=182  Identities=10%  Similarity=-0.079  Sum_probs=150.2

Q ss_pred             HhcCCCHHHHHHHHHhhc--------c-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           74 CEESKSLNKALSLLQENL--------H-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~--------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      ...| ++++|++.+++..        + .+.+...+..+..++...|++++|...++++. +.. +.+...|..+..+|.
T Consensus       402 ~~~~-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLS-QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA-ERV-GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTC-CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHH-CCCHHHHHHHHHHHH
T ss_pred             cccc-CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh-ccC-cchHHHHHHHHHHHH
Confidence            7788 9999999999998        5 45566788889999999999999999999998 544 456778888999999


Q ss_pred             hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHH
Q 037178          145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~  220 (311)
                      +.|++++|.+.|++..   ..+...|..+..++.+.|++++ .+.|++..+   ..|+ ...|..+..++.+.|++++|.
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999865   2377889999999999999999 999999876   4454 567889999999999999999


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHhcCC--------HHHHHHHHhhCCC
Q 037178          221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAF--------VEEMVKLFEVMPE  263 (311)
Q Consensus       221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~  263 (311)
                      +.+++..+.. +-+...+..+..+|...|+        +++|.+.+..+..
T Consensus       555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  604 (681)
T 2pzi_A          555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP  604 (681)
T ss_dssp             HHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred             HHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence            9999887654 3356788888888766444        7788888887763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.92  E-value=2.3e-08  Score=89.32  Aligned_cols=105  Identities=6%  Similarity=-0.153  Sum_probs=59.2

Q ss_pred             cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcH--HHHHHHHH-HHHhcCCHHHHHHHHhhCCC-------------
Q 037178          200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV--FVSNALIA-MYGKCAFVEEMVKLFEVMPE-------------  263 (311)
Q Consensus       200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~-------------  263 (311)
                      ..++..+...+...|++++|...|++..+....+..  ..+..+.. .+...|+.++|...|++..+             
T Consensus       334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~  413 (472)
T 4g1t_A          334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD  413 (472)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            455667777888889999999999988876544332  22333332 23467888888888775431             


Q ss_pred             --------------CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccC-CCCCCceeE
Q 037178          264 --------------RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEE-GFIPDVITV  306 (311)
Q Consensus       264 --------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~-g~~P~~~t~  306 (311)
                                    .+..+|+.+-..|...|+.++|.+.|++.  .+. ...|+..++
T Consensus       414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA--Le~~~~~p~a~~~  469 (472)
T 4g1t_A          414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG--LESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCCCCcHhhc
Confidence                          24578889999999999999999999998  443 355665554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.91  E-value=6e-08  Score=74.80  Aligned_cols=153  Identities=10%  Similarity=-0.065  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH-Hh
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA-CG  211 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~-~~  211 (311)
                      +..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|...|++...   ..|+...+...... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence            34466778889999999999998874   3678899999999999999999999998865   33433222221111 22


Q ss_pred             ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHHhCCCcchHH
Q 037178          212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN---LVSWNSIICGFSENGFSCESF  286 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~---~~~y~~li~~~~~~g~~~~a~  286 (311)
                      ..++..++...++...+.. +-+...+..+...|...|++++|...|++..+  |+   ...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            3334455788888888765 44688999999999999999999999998875  43   458899999999999999999


Q ss_pred             HHHHhh
Q 037178          287 DLLIKM  292 (311)
Q Consensus       287 ~l~~~m  292 (311)
                      ..|++.
T Consensus       165 ~~y~~a  170 (176)
T 2r5s_A          165 SKYRRQ  170 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.91  E-value=5e-08  Score=80.16  Aligned_cols=164  Identities=9%  Similarity=0.014  Sum_probs=106.1

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCchhh
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSNDFI  134 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~  134 (311)
                      .+...+-.+...+.+.| ++++|+..|+++.. .+.+   ...+..+..++...|++++|...|+... +..  -+....
T Consensus        13 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI-QIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHCCCCchhHH
Confidence            34455666777788888 99999999998888 3333   5667777888888899999999998888 432  112244


Q ss_pred             HHHHHHHHHHh--------cCChhHHHHHHHhcCC--C-ChHHH-----------------HHHHHHHHhCCChhhHHHH
Q 037178          135 INTRLITMYSL--------CGFPLDSRRVFDSLKT--R-NLFQW-----------------NALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       135 ~~~~ll~~~~~--------~g~~~~A~~l~~~m~~--~-~~~~y-----------------~~li~~~~~~g~~~~a~~~  186 (311)
                      .+..+..++.+        .|++++|...|++..+  | +...+                 ..+...|.+.|++++|...
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            56667777777        7888888888877652  3 22222                 3445566666666666666


Q ss_pred             HHHhhhcCCCCCC----cchHHHHHHHHhcc----------CChhhHHHHHHHHHHh
Q 037178          187 FVELSSDTELKPD----NFTFPCVIKACGGI----------ADVGFGSGVHGMAAKM  229 (311)
Q Consensus       187 ~~~m~~~~~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~m~~~  229 (311)
                      |++..+   ..|+    ...+..+..++...          |++++|...++.+.+.
T Consensus       171 ~~~~l~---~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          171 YEAVFD---AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHH---HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            666654   1232    12344555555544          5566666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=7.3e-08  Score=80.62  Aligned_cols=159  Identities=8%  Similarity=-0.139  Sum_probs=127.7

Q ss_pred             CchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH-H
Q 037178          130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP-C  205 (311)
Q Consensus       130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~-~  205 (311)
                      +.+...+..+...+.+.|++++|...|++..  .| +...+..+...+.+.|++++|...+++...   ..|+..... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence            5566667778888889999999999999875  33 677889999999999999999999998865   345543222 2


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHHhCC
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN---LVSWNSIICGFSENG  280 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~---~~~y~~li~~~~~~g  280 (311)
                      ....+...++.++|...+++..+.. +.+...+..+...|...|++++|...|++..+  |+   ...+..+...|...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2233667788888999998888875 56788999999999999999999999998874  43   567999999999999


Q ss_pred             CcchHHHHHHhh
Q 037178          281 FSCESFDLLIKM  292 (311)
Q Consensus       281 ~~~~a~~l~~~m  292 (311)
                      +.++|...+++-
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            999999888775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.89  E-value=4.1e-08  Score=82.16  Aligned_cols=168  Identities=11%  Similarity=-0.085  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                      +...+++.. ..+ .++..+...+..++...|++++|++++.+...     .+...+-.++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            566777766 444 44455556788889999999999999988632     35567888999999999999999999999


Q ss_pred             hhcCCCCC-----CcchHHHHHHHHh--c--cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178          191 SSDTELKP-----DNFTFPCVIKACG--G--IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       191 ~~~~~~~p-----~~~t~~~li~~~~--~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  261 (311)
                      .+   ..|     +..+...+..++.  .  .++..+|..+|+++.+.  .|+...-..++.++.+.|++++|++.++.+
T Consensus       163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77   456     3556666666632  2  33899999999998665  344334445555889999999999999865


Q ss_pred             CC------------C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          262 PE------------R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       262 ~~------------~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .+            | |..+.-.+|......|+  +|.++++++
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL  279 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL  279 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence            43            2 55666455555555565  888999988

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.85  E-value=5.5e-08  Score=84.63  Aligned_cols=189  Identities=9%  Similarity=-0.073  Sum_probs=146.2

Q ss_pred             HHHhcccCCChhHHHHHHHHHHhhc----CCCc-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C-----ChHHH
Q 037178          103 LLQACGHEKDIEIGKRVHELVSAST----QFSN-DFIINTRLITMYSLCGFPLDSRRVFDSLKT-----R-----NLFQW  167 (311)
Q Consensus       103 ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~-----~~~~y  167 (311)
                      ....+...|++++|...+++.. +.    +-.+ ...++..+...|...|++++|...+++..+     +     ...++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            4556678999999999999988 43    1112 346788899999999999999988877542     1     23578


Q ss_pred             HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHh----CC-CCcHHHH
Q 037178          168 NALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKM----GL-IGDVFVS  238 (311)
Q Consensus       168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~  238 (311)
                      +.+...|...|++++|...|++..+...-.++    ..++..+...+...|++++|.+.+++..+.    +. +....++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            99999999999999999999887541111111    247888999999999999999999988773    33 4457889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-----CCh---hhHHHHHHHHHhCCC---cchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE-----RNL---VSWNSIICGFSENGF---SCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~-----~~~---~~y~~li~~~~~~g~---~~~a~~l~~~m  292 (311)
                      ..+...|.+.|++++|.+.+++..+     .|.   ..++.+-..|...|+   .++|..++++.
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            9999999999999999999998764     222   235677788888888   77777777665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.82  E-value=1.8e-07  Score=87.21  Aligned_cols=207  Identities=12%  Similarity=0.017  Sum_probs=164.3

Q ss_pred             HHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHH-HHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178           81 NKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGK-RVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS  158 (311)
Q Consensus        81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~  158 (311)
                      +.+..+|++... .+-+...|......+...|+.++|. .+++... .. ++.+...|-.++...-+.|++++|.++|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            445678888888 7778888988888888889999996 9999998 53 355667788888899999999999999998


Q ss_pred             cCC-------------CC------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-C-CCCCcchHHHHHHHHh
Q 037178          159 LKT-------------RN------------LFQWNALVSGFTKNELYTDVLSIFVELSSDT-E-LKPDNFTFPCVIKACG  211 (311)
Q Consensus       159 m~~-------------~~------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~~p~~~t~~~li~~~~  211 (311)
                      +.+             |+            ...|...+....+.|..+.|..+|.+..+ . + ..+..+...+.+.-.+
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHh
Confidence            753             31            23688888888888999999999999987 3 1 1222233333333222


Q ss_pred             ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCCcchH
Q 037178          212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R----NLVSWNSIICGFSENGFSCES  285 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~~~~y~~li~~~~~~g~~~~a  285 (311)
                       .++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+...+  +    ....|...+.--.+.|+.+.+
T Consensus       483 -~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          483 -SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             -TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             -CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence             35699999999999887 455777888999999999999999999999886  3    235899999999999999999


Q ss_pred             HHHHHhh
Q 037178          286 FDLLIKM  292 (311)
Q Consensus       286 ~~l~~~m  292 (311)
                      .++.+++
T Consensus       561 ~~v~~R~  567 (679)
T 4e6h_A          561 RTLEKRF  567 (679)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999999

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.82  E-value=8.5e-08  Score=73.92  Aligned_cols=159  Identities=8%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM-  142 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~-  142 (311)
                      .+..+...+.+.| ++++|...|++..+ .+.+...+..+...+...|++++|...++.+. ...  |+...+..+... 
T Consensus         8 ~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~-~~~--p~~~~~~~~~~~~   83 (176)
T 2r5s_A            8 QLLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP-LEY--QDNSYKSLIAKLE   83 (176)
T ss_dssp             THHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC-GGG--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh-hcc--CChHHHHHHHHHH
Confidence            4556677788888 99999999998888 55667788888888889999999999988877 433  233333222111 


Q ss_pred             HHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhh
Q 037178          143 YSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~  218 (311)
                      +.+.+...+|...|++..  .| +...+..+...+...|++++|...|++..+ ..-.+ +...+..+...+...|+.++
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-VNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCcccChHHHHHHHHHHHHHhCCCCc
Confidence            122233344666676654  23 567788888888888888888888888766 32221 24467778888888888888


Q ss_pred             HHHHHHHHHH
Q 037178          219 GSGVHGMAAK  228 (311)
Q Consensus       219 a~~~~~~m~~  228 (311)
                      |...+++...
T Consensus       163 A~~~y~~al~  172 (176)
T 2r5s_A          163 IASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.82  E-value=8.2e-08  Score=80.35  Aligned_cols=175  Identities=11%  Similarity=-0.004  Sum_probs=132.8

Q ss_pred             HHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178           83 ALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLK  160 (311)
Q Consensus        83 a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~  160 (311)
                      |+..|++... ..++..++..+..++...|++++|.+++.+.. ..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6677777766 45667777788889999999999999999987 5442 2477888899999999999999999999987


Q ss_pred             C--C-----ChHHHHHHHHHHH----hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          161 T--R-----NLFQWNALVSGFT----KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       161 ~--~-----~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +  |     +-.+...++.+++    ..++..+|+.+|+++.+   -.|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4  4     1345555555532    34599999999999966   3355444556666899999999999999977654


Q ss_pred             -----CC----CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          230 -----GL----IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       230 -----g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                           +.    +-|..+.-.+|..+...|+  +|.+++.++.+
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence                 11    4467777666666666787  88899888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.82  E-value=1.7e-07  Score=78.33  Aligned_cols=163  Identities=6%  Similarity=-0.097  Sum_probs=130.9

Q ss_pred             CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHH-HH
Q 037178           93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQW-NA  169 (311)
Q Consensus        93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y-~~  169 (311)
                      .+.+...+..+...+.+.|++++|...++++. +.. +-+...+..+...|.+.|++++|...|++...  |+.... ..
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAW-QLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            34556677788888889999999999999998 544 44567788899999999999999999999874  544332 23


Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHh
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGK  247 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~  247 (311)
                      ....+.+.++.++|...+++...   ..|+ ...+..+...+...|++++|...+.++.+..-.. +...+..+...|..
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            33346677888999999998876   3464 5678889999999999999999999999875322 37889999999999


Q ss_pred             cCCHHHHHHHHhh
Q 037178          248 CAFVEEMVKLFEV  260 (311)
Q Consensus       248 ~g~~~~A~~~~~~  260 (311)
                      .|+.++|...|++
T Consensus       268 ~g~~~~a~~~~r~  280 (287)
T 3qou_A          268 LGTGDALASXYRR  280 (287)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             cCCCCcHHHHHHH
Confidence            9999999888875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.79  E-value=2.1e-07  Score=80.85  Aligned_cols=195  Identities=10%  Similarity=-0.024  Sum_probs=146.7

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCC
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSAST----QFS  130 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~  130 (311)
                      ..+|..+-..|...| ++++|+..+++...   ..++     ..+++.+...+...|++++|...+++.. +.    +-.
T Consensus       141 a~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~  218 (378)
T 3q15_A          141 AEFHFKVAEAYYHMK-QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL-ELAMDIQND  218 (378)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHcCCH
Confidence            356888889999999 99999999999887   2222     4467788889999999999999999877 32    211


Q ss_pred             -chhhHHHHHHHHHHhcCChhHHHHHHHhcCC-------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--
Q 037178          131 -NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--  199 (311)
Q Consensus       131 -~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--  199 (311)
                       ....+++.+..+|...|++++|...|++..+       | ...++..+...+.+.|++++|...+++..+...-..+  
T Consensus       219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  298 (378)
T 3q15_A          219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF  298 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence             1245778899999999999999999987653       2 3567889999999999999999999997651211112  


Q ss_pred             -cchHHHHHHHHhccCC---hhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          200 -NFTFPCVIKACGGIAD---VGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       200 -~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                       ...+..+-..+...|+   +++|...++.   .+..+ ....+..+...|.+.|++++|.+.|++..
T Consensus       299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          299 YKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             2345555566677777   6666666554   33333 34577789999999999999999988643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.77  E-value=1e-07  Score=78.32  Aligned_cols=164  Identities=7%  Similarity=-0.125  Sum_probs=124.3

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch---hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C----ChH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND---FIINTRLITMYSLCGFPLDSRRVFDSLKT--R----NLF  165 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~----~~~  165 (311)
                      .+...+......+.+.|++++|...|+.+. +.. +.+   ...+..+..+|.+.|++++|...|++..+  |    ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            455667777778889999999999999998 543 222   56777788999999999999999998753  3    235


Q ss_pred             HHHHHHHHHHh--------CCChhhHHHHHHHhhhcCCCCCCc-chH-----------------HHHHHHHhccCChhhH
Q 037178          166 QWNALVSGFTK--------NELYTDVLSIFVELSSDTELKPDN-FTF-----------------PCVIKACGGIADVGFG  219 (311)
Q Consensus       166 ~y~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~t~-----------------~~li~~~~~~g~~~~a  219 (311)
                      .+..+..++.+        .|++++|...|++...   ..|+. ...                 ..+...+.+.|++++|
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            67778888888        9999999999999876   33543 333                 4456778888999999


Q ss_pred             HHHHHHHHHhCCCC--cHHHHHHHHHHHHhc----------CCHHHHHHHHhhCCC
Q 037178          220 SGVHGMAAKMGLIG--DVFVSNALIAMYGKC----------AFVEEMVKLFEVMPE  263 (311)
Q Consensus       220 ~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~  263 (311)
                      ...++.+.+..-..  ....+..+..+|.+.          |++++|...|++..+
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            99998888764221  345777777888766          888889988888764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.77  E-value=1.7e-07  Score=74.34  Aligned_cols=120  Identities=9%  Similarity=-0.156  Sum_probs=61.5

Q ss_pred             HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA  214 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g  214 (311)
                      +..+|.+.|++++|...|++..   ..+...|..+...+...|++++|...|++..+   +.|+ ..++..+...+...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHh
Confidence            5556666666666666666543   22555666666666666666666666666654   3343 344555555544433


Q ss_pred             C--hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          215 D--VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       215 ~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +  .+.+...+....  ...|....+.....++...|++++|...|++..+
T Consensus       137 ~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          137 EQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            2  222333333321  1122222333334444555666666666666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.76  E-value=1.1e-07  Score=75.48  Aligned_cols=168  Identities=13%  Similarity=-0.010  Sum_probs=123.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHH----------------HHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGV----------------LLQACGHEKDIEIGKRVHELVSASTQFS  130 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~g~~  130 (311)
                      .....+.+.| ++++|+..|++... .+-+...|..                +..++.+.|++++|...++... +.. +
T Consensus         9 ~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p   85 (208)
T 3urz_A            9 QKVSAAIEAG-QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-QKA-P   85 (208)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-T
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHC-C
Confidence            3445677889 99999999999988 4344566766                8888999999999999999998 654 4


Q ss_pred             chhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178          131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKPDNFTFPC  205 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~t~~~  205 (311)
                      -+...+..+..+|...|++++|...|++..   ..+..+|..+...|...|+  ...+...++....   ..|....+..
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~  162 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARYR  162 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHHH
Confidence            567888899999999999999999999875   3477889999888876654  3444555544432   2222233444


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .-.++...|++++|...+++..+.  .|+......+..
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~  198 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            455667789999999999998765  567655554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.74  E-value=1.2e-07  Score=87.09  Aligned_cols=147  Identities=10%  Similarity=-0.052  Sum_probs=99.0

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD  157 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~  157 (311)
                      ++++|++.|++..+ .+.+...+..+...+...|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus         4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            77888888888777 44556777778888888888888888888887 443 3456677778888888888888888887


Q ss_pred             hcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhcc---CChhhHHHHHHHHHHhC
Q 037178          158 SLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGI---ADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       158 ~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~g  230 (311)
                      +..   ..+...|..+..+|.+.|++++|.+.|++..+   ..|+ ...+..+...+...   |+.++|.+.+++..+.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            754   23667788888888888888888888888765   2343 45677777777777   88888888888877765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=1.4e-07  Score=79.58  Aligned_cols=207  Identities=6%  Similarity=-0.119  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHhhcc-C-------CCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCc-hhhHHHHHHH
Q 037178           79 SLNKALSLLQENLH-N-------ADLK----EATGVLLQACGHEKDIEIGKRVHELVSAST----QFSN-DFIINTRLIT  141 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~-------~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-~~~~~~~ll~  141 (311)
                      ++++|.+++++..+ .       .++.    ..|......+...|++++|...+.+.. +.    +-.. -..+|+.+..
T Consensus         6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~   84 (307)
T 2ifu_A            6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQAGM   84 (307)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence            66777777776554 1       1221    245555666777888888888888766 32    1111 1447777888


Q ss_pred             HHHhcCChhHHHHHHHhcC-------CC--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCC-CcchHHHHHH
Q 037178          142 MYSLCGFPLDSRRVFDSLK-------TR--NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKP-DNFTFPCVIK  208 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~-------~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~t~~~li~  208 (311)
                      +|.+.|++++|...|++..       .+  -..+|+.+...|.. |++++|+..|++...-   .+-.. ...++..+..
T Consensus        85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  163 (307)
T 2ifu_A           85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR  163 (307)
T ss_dssp             HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            8888888888888777643       12  13567788888877 8899998888887540   11100 1346777888


Q ss_pred             HHhccCChhhHHHHHHHHHHh----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCh------hhHHHHHHHH
Q 037178          209 ACGGIADVGFGSGVHGMAAKM----GLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMP-ERNL------VSWNSIICGF  276 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~------~~y~~li~~~  276 (311)
                      .+.+.|++++|...+++..+.    +..+. ...+..+...+...|++++|...|++.. .|+.      .....++.++
T Consensus       164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~  243 (307)
T 2ifu_A          164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY  243 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            888889999998888887653    21111 2366677777778889999988888876 2221      1234455555


Q ss_pred             HhCCCcchHHHH
Q 037178          277 SENGFSCESFDL  288 (311)
Q Consensus       277 ~~~g~~~~a~~l  288 (311)
                       ..|+.+.+.++
T Consensus       244 -~~~d~~~~~~~  254 (307)
T 2ifu_A          244 -DEQDEEQLLRV  254 (307)
T ss_dssp             -HTTCHHHHHHH
T ss_pred             -HhcCHHHHHHH
Confidence             56776666653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.73  E-value=3.2e-07  Score=73.65  Aligned_cols=174  Identities=9%  Similarity=-0.021  Sum_probs=108.6

Q ss_pred             hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCc-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CCh----HHHH
Q 037178           97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSN-DFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNL----FQWN  168 (311)
Q Consensus        97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~----~~y~  168 (311)
                      ...+......+.+.|++++|...|+.+. +.. -.+ ....+..+..+|.+.|++++|...|++..+  |+.    .++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445555666777888888888888877 432 111 234566677788888888888888877652  321    1344


Q ss_pred             HHHHHHHh------------------CCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          169 ALVSGFTK------------------NELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       169 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      .+..++.+                  .|++++|...|++..+   ..|+.. .......    .+      .+...+   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~----l~------~~~~~~---  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKR----LV------FLKDRL---  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHH----HH------HHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHH----HH------HHHHHH---
Confidence            44444443                  4566777777777654   334432 1111100    00      000000   


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          230 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNL----VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       230 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                           ....-.+...|.+.|++++|...|+++.+  |+.    ..+..+..+|.+.|+.++|.+.++.+
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                 01113456778899999999999998875  443    46788899999999999999999988

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.72  E-value=1.2e-07  Score=71.14  Aligned_cols=140  Identities=10%  Similarity=-0.089  Sum_probs=90.8

Q ss_pred             HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChh
Q 037178          105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYT  181 (311)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~  181 (311)
                      ..+...|++++|...+.... ... +-+...+-.+-..|.+.|++++|.+.|++..   ..+..+|..+..+|.+.|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~-~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGST-PSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHS-CSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhc-ccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            34455667777777777665 221 1123344457777777788888887777654   236677778888888888888


Q ss_pred             hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHH-HHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGV-HGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      +|...|++..+   +.|+ ...+..+...+.+.|+.+++.+. ++...+.. +-+..+|......+.+.|+
T Consensus        83 ~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            88888877765   4454 45677777777777877765554 46666654 3456667766666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=1.1e-06  Score=73.56  Aligned_cols=153  Identities=12%  Similarity=-0.091  Sum_probs=99.4

Q ss_pred             HHHHHHhcCChhHHHHHHHhcCCC-----C----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCc----chHH
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKTR-----N----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDN----FTFP  204 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~~-----~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~----~t~~  204 (311)
                      .+..+...|++++|.+.+++..+.     +    ...|..+...+...|++++|...|++... .... ++.    .+++
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHH
Confidence            356667777777777777765431     1    11233466666666778888888877765 2222 222    2577


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHh-----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-hhhH
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKM-----GLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN-LVSW  269 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~-~~~y  269 (311)
                      .+...+...|++++|...++...+.     +..+ ...+|..+...|.+.|++++|...+++..+        .. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            7777788888888888888777631     1122 234777788888888888888888776653        11 3567


Q ss_pred             HHHHHHHHhCCC-cchHHHHHHhh
Q 037178          270 NSIICGFSENGF-SCESFDLLIKM  292 (311)
Q Consensus       270 ~~li~~~~~~g~-~~~a~~l~~~m  292 (311)
                      ..+..+|.+.|+ .++|.+.+++.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHH
Confidence            777788888884 47777777665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.72  E-value=5.7e-07  Score=71.11  Aligned_cols=126  Identities=7%  Similarity=-0.190  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI  213 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~  213 (311)
                      .+..+...+...|++++|...|++..+++...|..+...|.+.|++++|...|++... .  .| +...+..+..++...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-R--DKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CccchHHHHHHHHHHHHc
Confidence            3445777888899999999999998888888999999999999999999999999876 2  34 456788888999999


Q ss_pred             CChhhHHHHHHHHHHhCCC--------------C-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          214 ADVGFGSGVHGMAAKMGLI--------------G-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      |++++|.+.++...+..-.              | ...++..+...|.+.|++++|.+.|++..+
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999999999998875311              1 237889999999999999999999998875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.70  E-value=2.5e-07  Score=84.92  Aligned_cols=148  Identities=7%  Similarity=-0.067  Sum_probs=113.0

Q ss_pred             CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHH
Q 037178          110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      .|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAV-RHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478889999999887 443 34577888899999999999999999998653   3678899999999999999999999


Q ss_pred             HHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHhhCC
Q 037178          187 FVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC---AFVEEMVKLFEVMP  262 (311)
Q Consensus       187 ~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~  262 (311)
                      |++..+   ..|+ ...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...|.+.   |+.++|.+.+++..
T Consensus        80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999876   3454 5688899999999999999999999998875 45678899999999999   99999999999887


Q ss_pred             C
Q 037178          263 E  263 (311)
Q Consensus       263 ~  263 (311)
                      +
T Consensus       156 ~  156 (568)
T 2vsy_A          156 A  156 (568)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.69  E-value=4.9e-08  Score=73.30  Aligned_cols=138  Identities=4%  Similarity=-0.135  Sum_probs=99.8

Q ss_pred             HHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCC
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIAD  215 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~  215 (311)
                      -..+...|++++|.+.+....+.   +...+-.+...|.+.|++++|.+.|++..+   +.|+ ..+|..+..++.+.|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence            34455667888888888876643   345667788888888999999999888876   4554 5678888888888889


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HhhCCC--C-ChhhHHHHHHHHHhCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKL-FEVMPE--R-NLVSWNSIICGFSENGF  281 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~--~-~~~~y~~li~~~~~~g~  281 (311)
                      +++|...++...+.. +-+..+|..+...|.+.|+.++|.+. +++..+  | +..+|+.....+...|+
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999998888888775 44678888888888888888766655 455543  4 45667666666655553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.67  E-value=2.5e-06  Score=76.12  Aligned_cols=220  Identities=7%  Similarity=-0.047  Sum_probs=142.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCC---ChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEK---DIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+..+-..|...+ .++++........+  ...++..+..+...+...|   +.++|...|+... +.| .++...+..|
T Consensus       143 a~~~Lg~~y~~~~-~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~L  219 (452)
T 3e4b_A          143 AGLAQVLLYRTQG-TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSV  219 (452)
T ss_dssp             HHHHHHHHHHHHT-CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHH
Confidence            3444444444444 44433333332222  2344447777777777778   7888888888887 666 3444444446


Q ss_pred             HHHHHhc----CChhHHHHHHHhcCCCChHHHHHHHHH-H--HhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          140 ITMYSLC----GFPLDSRRVFDSLKTRNLFQWNALVSG-F--TKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       140 l~~~~~~----g~~~~A~~l~~~m~~~~~~~y~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      ...|...    ++.++|.+.|++....+...+..+... +  ...|++++|.+.|++..+ .|   +...+..+-..|. 
T Consensus       220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-  294 (452)
T 3e4b_A          220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-  294 (452)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-
Confidence            6666554    688888888887763366677777766 3  457888888888888776 55   4555656666555 


Q ss_pred             cC-----ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----
Q 037178          213 IA-----DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPER-NLVSWNSIICGFSE----  278 (311)
Q Consensus       213 ~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~y~~li~~~~~----  278 (311)
                      .|     +.++|.+.|.+..    .-+...+..|-..|..    ..++++|.+.|++..++ +......|-..|..    
T Consensus       295 ~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~  370 (452)
T 3e4b_A          295 EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT  370 (452)
T ss_dssp             HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred             cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence            44     8888888887766    3356677777777766    33888888888877653 45566666666664    


Q ss_pred             CCCcchHHHHHHhhhhccCC
Q 037178          279 NGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       279 ~g~~~~a~~l~~~m~~~~~g  298 (311)
                      ..+.++|..+|+..  .+.|
T Consensus       371 ~~d~~~A~~~~~~A--~~~g  388 (452)
T 3e4b_A          371 KPDPLNAYVFSQLA--KAQD  388 (452)
T ss_dssp             CCCHHHHHHHHHHH--HTTC
T ss_pred             CCCHHHHHHHHHHH--HHCC
Confidence            34777788888777  5554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.63  E-value=1.7e-05  Score=66.71  Aligned_cols=217  Identities=8%  Similarity=-0.026  Sum_probs=166.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCC--ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH---
Q 037178           70 ITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEK--DIEIGKRVHELVSASTQFSNDFIINTRLITMY---  143 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~---  143 (311)
                      +.+..+.|...++|+++++.+....|+ ...|+.--..+...|  +++++...++.+. ... +-+..+|+.--..+   
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-~~n-Pk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA-LDN-EKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHC-TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHC-cccHHHHHHHHHHHHHH
Confidence            334445552567999999999994444 556777777777777  9999999999998 554 34455565555555   


Q ss_pred             -Hhc---CChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChh--hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178          144 -SLC---GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYT--DVLSIFVELSSDTELKP-DNFTFPCVIKACGGI  213 (311)
Q Consensus       144 -~~~---g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~  213 (311)
                       .+.   +++++++++++.+.   .+|-.+|+.-...+.+.|.++  ++++.++++.+ .  .| |-..|+.-...+.+.
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~--d~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-T--DLKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHSS
T ss_pred             HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHhc
Confidence             555   78999999999986   357788988888888889988  99999999987 3  33 445566555555666


Q ss_pred             CC------hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHhhCCC------CChhhHHHHHHHHHhCC
Q 037178          214 AD------VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE-MVKLFEVMPE------RNLVSWNSIICGFSENG  280 (311)
Q Consensus       214 g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~------~~~~~y~~li~~~~~~g  280 (311)
                      |.      ++++.+.+..+.... +-|...|+-+-..+.+.|+..+ +..+.++..+      .+...+..+...|.+.|
T Consensus       194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            65      888999999988886 6689999999999999988444 5556666543      35678899999999999


Q ss_pred             CcchHHHHHHhh
Q 037178          281 FSCESFDLLIKM  292 (311)
Q Consensus       281 ~~~~a~~l~~~m  292 (311)
                      +.++|.++++.+
T Consensus       273 ~~~~A~~~~~~l  284 (306)
T 3dra_A          273 KYNESRTVYDLL  284 (306)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999998

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.63  E-value=3.8e-07  Score=72.13  Aligned_cols=122  Identities=7%  Similarity=-0.098  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM  244 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  244 (311)
                      ..+..+...+...|++++|...|++..     .|+...+..+...+...|++++|...++...+.. +.+...|..+...
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~   80 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            346667788899999999999998774     4677899999999999999999999999998876 5578899999999


Q ss_pred             HHhcCCHHHHHHHHhhCCC--C-Ch----------------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          245 YGKCAFVEEMVKLFEVMPE--R-NL----------------VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~~--~-~~----------------~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |.+.|++++|.+.|++..+  | +.                ..|..+...|...|++++|.+.+++.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999998764  2 22                68889999999999999999999998

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.61  E-value=2.8e-06  Score=68.06  Aligned_cols=178  Identities=7%  Similarity=-0.089  Sum_probs=112.3

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCchh-hHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSNDF-IINT  137 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~~~-~~~~  137 (311)
                      ..+..+...+.+.| ++++|+..|+++....|+    ...+..+..++.+.|++++|...|+.+. +.. -.+.. ..+-
T Consensus         5 ~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDG-NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCcHHHHHH
Confidence            34566677888999 999999999999883232    3467778889999999999999999998 443 12221 2333


Q ss_pred             HHHHHHHh------------------cCChhHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC
Q 037178          138 RLITMYSL------------------CGFPLDSRRVFDSLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTEL  196 (311)
Q Consensus       138 ~ll~~~~~------------------~g~~~~A~~l~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~  196 (311)
                      .+..++.+                  .|+.++|...|+++.+  |+ ...+.+....          ..+...+..    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~~----  148 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLAK----  148 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHHH----
Confidence            34444443                  5789999999998764  32 2233221110          000011100    


Q ss_pred             CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          197 KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       197 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                           ....+...+.+.|++++|...++.+.+..-..  ....+..+..+|.+.|+.++|.+.++.+.
T Consensus       149 -----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          149 -----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                 11234555667777777777777776653111  12456677777777777777777776554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=1.5e-07  Score=73.66  Aligned_cols=172  Identities=10%  Similarity=-0.065  Sum_probs=116.8

Q ss_pred             ccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC------C---ChHHHHHHHHHHHhCC
Q 037178          108 GHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT------R---NLFQWNALVSGFTKNE  178 (311)
Q Consensus       108 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------~---~~~~y~~li~~~~~~g  178 (311)
                      ...|++++|.++++.+. . .......++..+...|...|++++|...|++..+      .   ...+++.+...+...|
T Consensus         3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            46788899988666655 3 2234667888888899999999999888877542      1   3457888888899999


Q ss_pred             ChhhHHHHHHHhhhc---CCCCC--CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCCC-cHHHHHHHHHHHHhc
Q 037178          179 LYTDVLSIFVELSSD---TELKP--DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLIG-DVFVSNALIAMYGKC  248 (311)
Q Consensus       179 ~~~~a~~~~~~m~~~---~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~  248 (311)
                      ++++|.+.+++....   .+-.|  ....+..+...+...|++++|...+++..+.    +... -..++..+...|.+.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            999999998886541   11111  1245777778888889999999888887643    2111 134467778888888


Q ss_pred             CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          249 AFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       249 g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |++++|.+.+++           .+...-+.|+......+...+
T Consensus       161 g~~~~A~~~~~~-----------al~~~~~~~~~~~~~~~~~~~  193 (203)
T 3gw4_A          161 KNLLEAQQHWLR-----------ARDIFAELEDSEAVNELMTRL  193 (203)
T ss_dssp             TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHhcc
Confidence            999999888776           445555555555555554444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.58  E-value=5e-06  Score=69.46  Aligned_cols=155  Identities=10%  Similarity=-0.135  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCC---CCh------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCC----cch
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKT---RNL------FQWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPD----NFT  202 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~---~~~------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~t  202 (311)
                      ...+..+...|++++|.+.+++..+   ...      ..+..+...+...|++++|...|++... ... ..+    ..+
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHHH
Confidence            3345555666666666666554321   111      1233344455566666666666666543 111 111    225


Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHH---hC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------hh
Q 037178          203 FPCVIKACGGIADVGFGSGVHGMAAK---MG-LIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-------LV  267 (311)
Q Consensus       203 ~~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------~~  267 (311)
                      |+.+...|...|++++|...+++..+   .. -.+  ...+|..+...|.+.|++++|...+++..+  ++       ..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            56666666666677777666666552   11 111  124666666667777777777766665542  11       34


Q ss_pred             hHHHHHHHHHhCCCcchH-HHHHHhh
Q 037178          268 SWNSIICGFSENGFSCES-FDLLIKM  292 (311)
Q Consensus       268 ~y~~li~~~~~~g~~~~a-~~l~~~m  292 (311)
                      +|..+...|.+.|+.++| .+.+++.
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            566666667777777666 5545443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.58  E-value=1.1e-06  Score=69.80  Aligned_cols=153  Identities=10%  Similarity=-0.085  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC-CChHHHHHHHHHHHhCC----ChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT-RNLFQWNALVSGFTKNE----LYTDVLSIFVELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      .+..|-..|...+++++|.+.|++..+ .+...+..|-..|.. +    ++++|.+.|++..+ .|   +...+..+-..
T Consensus        20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~   94 (212)
T 3rjv_A           20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGEIVLARV   94 (212)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHH
Confidence            333344444444444444444444332 233344444444444 3    44445554444433 22   23333333333


Q ss_pred             Hhc----cCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC--CChhhHHHHHHHHHh
Q 037178          210 CGG----IADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE--RNLVSWNSIICGFSE  278 (311)
Q Consensus       210 ~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~  278 (311)
                      +..    .+++++|.+++.+..+.|.. .+...+..|-..|..    .++.++|...|++..+  .+...+..|-..|..
T Consensus        95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            333    44445555555444443311 013444444444444    4445555555554432  233344444444443


Q ss_pred             C-C-----CcchHHHHHHhh
Q 037178          279 N-G-----FSCESFDLLIKM  292 (311)
Q Consensus       279 ~-g-----~~~~a~~l~~~m  292 (311)
                      . |     +.++|.++|++.
T Consensus       175 g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          175 GEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             CBTTTBCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHH
Confidence            2 1     455555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.56  E-value=7.7e-07  Score=75.05  Aligned_cols=185  Identities=9%  Similarity=-0.034  Sum_probs=137.6

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCc--
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAST----QFSN--  131 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~--  131 (311)
                      .|+.....|...| ++++|...|.+...   ...+    ..+|..+...+...|++++|...+++.. +.    | .+  
T Consensus        38 ~~~~a~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g-~~~~  114 (307)
T 2ifu_A           38 EYAKAAVAFKNAK-QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENG-TPDT  114 (307)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTT-CHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcC-CHHH
Confidence            5777788888999 99999999999877   1112    3478888889999999999999999876 32    2 22  


Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCCC
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKPD  199 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~  199 (311)
                      -..+++.+...|.+ |++++|...|++..+     .    -..+|+.+...|.+.|++++|+..|++....   .+..++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            24577888889988 999999999987642     1    1467899999999999999999999987651   111111


Q ss_pred             -cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc------HHHHHHHHHHHHhcCCHHHHHHH
Q 037178          200 -NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD------VFVSNALIAMYGKCAFVEEMVKL  257 (311)
Q Consensus       200 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~  257 (311)
                       ..++..+..++...|++++|...+++.. .  .|+      ......++..| ..|+.+.+.++
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence             1256666777778899999999999987 3  231      23455566665 57887777664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=3.1e-06  Score=69.84  Aligned_cols=183  Identities=11%  Similarity=-0.092  Sum_probs=131.4

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHH-------HhcccCCChhHHHHHHHHHHhhcCCCch--------------
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLL-------QACGHEKDIEIGKRVHELVSASTQFSND--------------  132 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~m~~~~g~~~~--------------  132 (311)
                      ..+ +...|.+.|.+..+ .+-....|..++       ..+.+.++..++...+...   .++.|+              
T Consensus        18 ~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~---l~l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS---VQISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT---TTCCGGGGCCEEECCTTTCC
T ss_pred             cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH---hcCChhhhhhhhccCCcccc
Confidence            567 99999999999999 555567777663       3333333333433333332   233332              


Q ss_pred             --------hhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--c
Q 037178          133 --------FIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--N  200 (311)
Q Consensus       133 --------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~  200 (311)
                              ...+-.+...+...|++++|.++|+.+..  |+-...-.+...+.+.|++++|+..|+.... .. .|.  .
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~  171 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAG  171 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHH
Confidence                    12344577888999999999999999873  4333666666788999999999999986654 21 121  2


Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..+..+-.++...|++++|...|++.......|  ..........++.+.|+.++|..+|+++.+
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            367778889999999999999999987544324  345677778888999999999999998874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.51  E-value=5.1e-06  Score=69.37  Aligned_cols=164  Identities=9%  Similarity=-0.135  Sum_probs=117.8

Q ss_pred             hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-chh----hHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----
Q 037178           98 EATGVLLQACGHEKDIEIGKRVHELVSASTQFS-NDF----IINTRLITMYSLCGFPLDSRRVFDSLKT-----RN----  163 (311)
Q Consensus        98 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----  163 (311)
                      ..+...+..+...|++++|.+.+.... +..-. ++.    ..+..+...+...|++++|...|++..+     .+    
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345556677778889999988888777 43211 211    2334466667788899999998876531     11    


Q ss_pred             hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-
Q 037178          164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-  233 (311)
Q Consensus       164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-  233 (311)
                      ..+|+.+...|...|++++|...|++........|+     ..+|..+...|.+.|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            358899999999999999999999987621111222     1578888999999999999999998876542    111 


Q ss_pred             cHHHHHHHHHHHHhcCCHHHH-HHHHhhCC
Q 037178          234 DVFVSNALIAMYGKCAFVEEM-VKLFEVMP  262 (311)
Q Consensus       234 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  262 (311)
                      -..+|..+...|.+.|+.++| ...+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            267889999999999999999 77666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.51  E-value=2.7e-06  Score=71.11  Aligned_cols=118  Identities=11%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-C--CCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-ch----hhHHH
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-N--ADLK----EATGVLLQACGHEKDIEIGKRVHELVSASTQFS-ND----FIINT  137 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~--~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~----~~~~~  137 (311)
                      +..+...| ++++|..++++... .  .++.    ..+..+...+...|++++|...++.+. +.... .+    ..+++
T Consensus        82 i~~~~~~~-~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           82 VIMLCKQK-RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHh-hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHhcccccHHHHHHHHH
Confidence            45566666 66666666666655 1  1111    122234444455556666666666665 32111 11    22455


Q ss_pred             HHHHHHHhcCChhHHHHHHHhcCC------C----ChHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178          138 RLITMYSLCGFPLDSRRVFDSLKT------R----NLFQWNALVSGFTKNELYTDVLSIFVE  189 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~l~~~m~~------~----~~~~y~~li~~~~~~g~~~~a~~~~~~  189 (311)
                      .+...|...|++++|...|++..+      .    ...+|..+...|.+.|++++|...+++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~  221 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK  221 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            555555555555555555544331      0    112344444444455555555444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.51  E-value=1.4e-06  Score=62.02  Aligned_cols=93  Identities=13%  Similarity=0.021  Sum_probs=48.0

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+...+...| ++++|.+.|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+..++..+...
T Consensus        10 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A           10 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHH
Confidence            34555555555666 66666666665555 33344455555555555555555555555555 322 2233444444455


Q ss_pred             HHhcCChhHHHHHHHhc
Q 037178          143 YSLCGFPLDSRRVFDSL  159 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m  159 (311)
                      |.+.|++++|...|+++
T Consensus        87 ~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHH
Confidence            55555555555554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.50  E-value=9.9e-07  Score=73.45  Aligned_cols=186  Identities=10%  Similarity=-0.049  Sum_probs=112.2

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS  172 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~  172 (311)
                      +...+..+...+...|++++|...++... +.. +.+...|..+..+|.+.|++++|...+++..+   .+...|..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556666677777788888888887777 443 33566777777888888888888888877653   35677888888


Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV  251 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  251 (311)
                      +|...|++++|...|++..+   ..|+. ..+...+....+.+   ++. -+..........+......+...  ..|+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~  151 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHSYLTRL--IAAER  151 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence            88888888888888887654   22211 11111222111111   111 11223333344455554444332  26888


Q ss_pred             HHHHHHHhhCCC--CC-hhhHHHHHHHHHhC-CCcchHHHHHHhh
Q 037178          252 EEMVKLFEVMPE--RN-LVSWNSIICGFSEN-GFSCESFDLLIKM  292 (311)
Q Consensus       252 ~~A~~~~~~m~~--~~-~~~y~~li~~~~~~-g~~~~a~~l~~~m  292 (311)
                      ++|.+.+++..+  |+ ......+-..+.+. +++++|.++|++.
T Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888887775  32 22333443444444 6678888888877

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.49  E-value=2.1e-06  Score=64.63  Aligned_cols=123  Identities=7%  Similarity=-0.072  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+..+|
T Consensus        15 ~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHH
Confidence            4555666666667 77777777776666 44455666666666666666666666666666 332 23344555555556


Q ss_pred             HhcCChhHHHHHHHhcCC---CChHHHHH--HHHHHHhCCChhhHHHHHHHh
Q 037178          144 SLCGFPLDSRRVFDSLKT---RNLFQWNA--LVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~--li~~~~~~g~~~~a~~~~~~m  190 (311)
                      .+.|++++|...|++..+   .+...+..  ....+.+.|++++|...+.+.
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            666666666666555431   23333322  222244455555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.48  E-value=3.4e-06  Score=59.88  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC  210 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~  210 (311)
                      ..+..+...+.+.|++++|.+.|+++.   ..+...|..+...+.+.|++++|...|+++.. .. ..+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hC-CccHHHHHHHHHHH
Confidence            344444445555555555555554432   12344455555555555555555555555443 11 11233444445555


Q ss_pred             hccCChhhHHHHHHHHHHh
Q 037178          211 GGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~  229 (311)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5555555555555554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=1.2e-06  Score=68.56  Aligned_cols=128  Identities=5%  Similarity=-0.120  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCC--Cc
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSS---DTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLI--GD  234 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~~  234 (311)
                      ..+..+...+...|++++|...+++...   ..+..| ...++..+...+...|++++|.+.+.+..+.    +-.  ..
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            3444444444555555555544444322   011111 1223444444444555555554444443322    101  11


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          235 VFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNL----VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..++..+...|...|++++|.+.+++..+     .+.    .++..+...+...|++++|.+.+++.
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            23344444444445555555444444331     111    12344444444455555554444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.47  E-value=1.9e-06  Score=62.13  Aligned_cols=112  Identities=10%  Similarity=-0.071  Sum_probs=54.5

Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHH
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVI  207 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li  207 (311)
                      +...+..+...+.+.|++++|.+.|++..+   .+...|..+...+...|++++|...|++..+   ..| +...+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHHHH
Confidence            344555555555555555555555554331   2444555555555555555555555555543   122 233444445


Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK  247 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  247 (311)
                      .++.+.|++++|.+.+++..+.. +.+...+..+...+.+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence            55555555555555555554442 2233344444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.46  E-value=2.7e-07  Score=76.96  Aligned_cols=191  Identities=6%  Similarity=-0.064  Sum_probs=129.3

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...+..+-..+.+.| ++++|+..|++... .+.+...|..+..++.+.|++++|...++... +.. +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence            3446777888899999 99999999999998 55678889999999999999999999999998 554 44677888899


Q ss_pred             HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  217 (311)
                      .+|.+.|++++|...|++..+  | +...+...+....+.   .++.. +..... .....+... ...+..+. .|+.+
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~i-~~~l~~l~-~~~~~  152 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEE-RRIHQESEL-HSYLTRLI-AAERE  152 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHH-TCCCCCCHH-HHHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHH-HHHhhhHHH-HHHHHHHH-HHHHH
Confidence            999999999999999988653  1 111111112211111   11111 122222 223333333 33333333 68888


Q ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCC
Q 037178          218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPE  263 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~  263 (311)
                      +|.+.++...+.. +.+......+-..+.+. +++++|.++|.+..+
T Consensus       153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          153 RELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8888887766543 33445555555556665 778999999987764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.46  E-value=8e-06  Score=72.79  Aligned_cols=154  Identities=9%  Similarity=0.003  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHHHhcC---CCChHHHHHHHHHHHhC----CChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178          135 INTRLITMYSLCG---FPLDSRRVFDSLK---TRNLFQWNALVSGFTKN----ELYTDVLSIFVELSSDTELKPDNFTFP  204 (311)
Q Consensus       135 ~~~~ll~~~~~~g---~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~t~~  204 (311)
                      .+..|-..|.+.|   +.++|.+.|++..   .++...+..+...|...    +++++|.+.|++..     .-+...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHH
Confidence            6666777888888   7888888887654   23444446666666544    67888888888764     22344555


Q ss_pred             HHHHH-H--hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhhHHHHHHHH
Q 037178          205 CVIKA-C--GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA-----FVEEMVKLFEVMPERNLVSWNSIICGF  276 (311)
Q Consensus       205 ~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~y~~li~~~  276 (311)
                      .+-.. +  ...++.++|.+.+.+..+.|   +...+..|...|. .|     ++++|.+.|++...-+...+..|-..|
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            55554 3  45789999999999888877   5667777777777 55     899999999988833556777777777


Q ss_pred             Hh----CCCcchHHHHHHhhhhccCCC
Q 037178          277 SE----NGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       277 ~~----~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      ..    ..+.++|.++|++.  .+.|.
T Consensus       329 ~~G~g~~~d~~~A~~~~~~A--a~~g~  353 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLTA--ARNGQ  353 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHHH--HTTTC
T ss_pred             HCCCCCCcCHHHHHHHHHHH--HhhCh
Confidence            66    34888899999888  55553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.45  E-value=2.4e-06  Score=61.20  Aligned_cols=114  Identities=7%  Similarity=-0.129  Sum_probs=53.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHH
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIK  208 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~  208 (311)
                      ...+..+...+...|++++|...|++..   ..+...|..+...+...|++++|...+++... .  .|+ ...+..+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~~~~   88 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-I--DPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-c--CccCHHHHHHHHH
Confidence            3344445555555555555555555432   12444455555555555555555555555443 1  222 334444444


Q ss_pred             HHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          209 ACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      .+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            4555555555555555544443 2233444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.45  E-value=7.4e-07  Score=68.42  Aligned_cols=115  Identities=13%  Similarity=0.133  Sum_probs=75.8

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-HHhcCCh--h
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM-YSLCGFP--L  150 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~-~~~~g~~--~  150 (311)
                      ..| ++++|...+++... .+.+...|..+...+...|++++|...++.+. +.. +.+...+..+..+ |.+.|++  +
T Consensus        22 ~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQ-NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL-QLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             ------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            455 77777777777666 55566677777777777777777777777776 433 2345556666666 6677776  7


Q ss_pred             HHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          151 DSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       151 ~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +|...|++..   ..+...|..+...|...|++++|...|++..+
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            7777777654   23556677777777777777777777777765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.44  E-value=2.5e-05  Score=61.89  Aligned_cols=161  Identities=10%  Similarity=-0.092  Sum_probs=109.0

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCC----ChhHHHHHHHHHHhhcCCCchhhHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEK----DIEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      .+..++..+-..|...+ ++++|+..|++..+ ..+...+..+-..+.. +    +.++|...|+... +.|   +...+
T Consensus        16 g~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g---~~~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSG-DYQKAEYWAQKAAA-QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAG---SKSGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTT---CHHHH
T ss_pred             CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCC---CHHHH
Confidence            34556667777777777 88888888887765 2345566666666666 5    7788888888877 544   44555


Q ss_pred             HHHHHHHHh----cCChhHHHHHHHhcCCCC-----hHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178          137 TRLITMYSL----CGFPLDSRRVFDSLKTRN-----LFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTF  203 (311)
Q Consensus       137 ~~ll~~~~~----~g~~~~A~~l~~~m~~~~-----~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~  203 (311)
                      ..|-..|..    .+++++|.+.|++..+.+     ..++..|-..|..    .+++++|...|++..+ .  ..+...+
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~a~  165 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-L--SRTGYAE  165 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-T--SCTTHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-c--CCCHHHH
Confidence            666667766    677888888888766532     5677777777777    6778888888887766 3  2344455


Q ss_pred             HHHHHHHhcc-C-----ChhhHHHHHHHHHHhCC
Q 037178          204 PCVIKACGGI-A-----DVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       204 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~  231 (311)
                      ..|-..|... |     +.++|..+++...+.|.
T Consensus       166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            5555555432 2     77788888877777763

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.42  E-value=3.3e-06  Score=63.51  Aligned_cols=123  Identities=9%  Similarity=-0.109  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKAC  210 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~  210 (311)
                      .+..+...+...|++++|...|++..   ..+...|..+...+...|++++|...|++...   ..| +...+..+..++
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHH
Confidence            34445555555556666555555433   22455555666666666666666666666544   123 234555555566


Q ss_pred             hccCChhhHHHHHHHHHHhCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHhhC
Q 037178          211 GGIADVGFGSGVHGMAAKMGLIGDVFVS--NALIAMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m  261 (311)
                      ...|++++|...+++..+.. +.+...+  -.....+.+.|++++|.+.+.+.
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66666666666666655543 2233333  22333355566666666665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.42  E-value=3e-06  Score=61.12  Aligned_cols=113  Identities=7%  Similarity=-0.063  Sum_probs=81.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...|..+...+.+.| ++++|...|++... .+.+...+..+...+...|++++|...+++.. +.. +.+...+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI-QLE-PTFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCchHHHHHHH
Confidence            4456777888888888 89999999888887 55567778888888888888888888888887 543 33556677777


Q ss_pred             HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhC
Q 037178          141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKN  177 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~  177 (311)
                      .+|.+.|++++|.+.|++..+  | +...+..+...+.+.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            777777888888777776542  2 334555555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.41  E-value=2.2e-06  Score=64.28  Aligned_cols=92  Identities=8%  Similarity=-0.080  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcC--C-CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLK--T-RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKAC  210 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~  210 (311)
                      .+..+...+.+.|++++|...|++..  . .+...|..+..+|.+.|++++|...|++..+   +.|+ ...|..+-.++
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHHH
Confidence            33334444444455555555554433  1 2344444444445555555555555544433   2232 23444444444


Q ss_pred             hccCChhhHHHHHHHHHHh
Q 037178          211 GGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~~  229 (311)
                      .+.|++++|...|+...+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            4444444444444444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.40  E-value=1.4e-06  Score=74.47  Aligned_cols=119  Identities=9%  Similarity=-0.037  Sum_probs=77.3

Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-C---------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhc
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-N---------------LFQWNALVSGFTKNELYTDVLSIFVELSSD  193 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~  193 (311)
                      +...+..+...|.+.|++++|...|++..  .| +               ...|..+..+|.+.|++++|+..|++..+ 
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-  224 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            34566667777777777777777776654  12 2               35667777777777777777777777655 


Q ss_pred             CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178          194 TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       194 ~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  254 (311)
                        +.| +...|..+..++...|++++|...|++..+.. +-+..++..+...+.+.|+.++|
T Consensus       225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence              233 34566666666777777777777777666654 33556666666666666766666

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.39  E-value=3.7e-06  Score=60.23  Aligned_cols=111  Identities=9%  Similarity=-0.095  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+...|
T Consensus        14 ~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           14 RLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hcC-ccCHHHHHHHHHHH
Confidence            4555555666666 66666666666655 43445555555555566666666666666655 332 22344444455555


Q ss_pred             HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCC
Q 037178          144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNE  178 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g  178 (311)
                      .+.|++++|...|++..   ..+...+..+..++.+.|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            55555555555554432   123344444444444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.35  E-value=6.8e-06  Score=76.63  Aligned_cols=198  Identities=6%  Similarity=-0.149  Sum_probs=151.2

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHH-HHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC---------CC
Q 037178           62 QGLHFLQEITTLCEESKSLNKAL-SLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ---------FS  130 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~-~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g---------~~  130 (311)
                      +...|-....-+.+.| +.++|. ++|++... .+.+...|...+...-+.|++++|.++|+.+. ...         -.
T Consensus       342 ~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l-~~l~~~~~~~~~~~  419 (679)
T 4e6h_A          342 APEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI-DRIHLDLAALMEDD  419 (679)
T ss_dssp             CHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHhhhhhhcc
Confidence            4456777777777788 888997 99999988 76677777788888888999999999999988 421         01


Q ss_pred             c------------hhhHHHHHHHHHHhcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhC-CChhhHHHHHHHhhhc
Q 037178          131 N------------DFIINTRLITMYSLCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKN-ELYTDVLSIFVELSSD  193 (311)
Q Consensus       131 ~------------~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~  193 (311)
                      |            ...+|...+...-+.|.++.|.++|++..+.    ....|-..+..-.+. ++.+.|..+|+...+ 
T Consensus       420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-  498 (679)
T 4e6h_A          420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-  498 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence            3            2347888888888899999999999987532    233443333333344 459999999999876 


Q ss_pred             CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          194 TELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       194 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      . +.-+...+...++-....|+.+.|+.+|++.......  -....|...++.-.+.|+.+.+.++.+++.+
T Consensus       499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3 2224445667788788899999999999998877532  2568899999999999999999999999874

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.34  E-value=0.00021  Score=60.90  Aligned_cols=216  Identities=10%  Similarity=0.006  Sum_probs=159.1

Q ss_pred             HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc-C
Q 037178           71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC-G  147 (311)
Q Consensus        71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~-g  147 (311)
                      ++..+.+...++|+++++++.. .+-+...|+.--..+...| +++++...++.+. ... +-+..+|+.--..+.+. +
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~n-PKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQN-LKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHhcC
Confidence            3334444267899999999999 4445566777666666777 5999999999998 554 55677888777777776 7


Q ss_pred             -ChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChh--------hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178          148 -FPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYT--------DVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA  214 (311)
Q Consensus       148 -~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g  214 (311)
                       +.++++++++.+.+.   |-.+|+.-...+.+.|.++        ++++.++++.+ .  .| |...|+..-..+.+.+
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~--dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-V--DGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHTTST
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHhcc
Confidence             899999999998853   6677877666666666666        89999999876 3  34 5556777777777777


Q ss_pred             C-------hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhCCC----
Q 037178          215 D-------VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV--------------------EEMVKLFEVMPE----  263 (311)
Q Consensus       215 ~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~----  263 (311)
                      +       ++++.+.+.+..... +-|...|+-+-..+.+.|+-                    .+..+...++..    
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP  294 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred             ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence            5       678888888888776 66889998888888777753                    445555555542    


Q ss_pred             -----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          264 -----RNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       264 -----~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                           +.......|...|...|+.++|.++++.+
T Consensus       295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                 34567888999999999999999999998

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.33  E-value=6.7e-07  Score=70.14  Aligned_cols=153  Identities=12%  Similarity=-0.062  Sum_probs=89.6

Q ss_pred             HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--------------cc
Q 037178          139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--------------NF  201 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--------------~~  201 (311)
                      .+......|.++++.+.|+.-.+   .....|..+...+.+.|++++|...|++......-.|+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            33444455666666666553322   13445667777777788888888888777651111111              15


Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSE  278 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~  278 (311)
                      .|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++..+  | +..++..+...+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            66777777788888888888888877764 44677777888888888888888888887653  3 45567777777777


Q ss_pred             CCCcchHH-HHHHhh
Q 037178          279 NGFSCESF-DLLIKM  292 (311)
Q Consensus       279 ~g~~~~a~-~l~~~m  292 (311)
                      .++.+++. ..+..|
T Consensus       169 ~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          169 LKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHC---------
T ss_pred             HHHHHHHHHHHHHHH
Confidence            66666665 455555

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.30  E-value=6.5e-06  Score=70.37  Aligned_cols=142  Identities=7%  Similarity=-0.113  Sum_probs=107.2

Q ss_pred             CChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----------------chHHHHH
Q 037178          147 GFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----------------FTFPCVI  207 (311)
Q Consensus       147 g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----------------~t~~~li  207 (311)
                      +++++|...|+...+  | +...|..+...|.+.|++++|...|++...   +.|+.                ..|..+.
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHH
Confidence            455555555544331  2 556788888888888899999888888766   33443                6788888


Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~  284 (311)
                      .++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+  | +..++..+...+.+.|+.++
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888889999988888888775 45778888888888888999999888888764  3 55678888888888888888


Q ss_pred             H-HHHHHhh
Q 037178          285 S-FDLLIKM  292 (311)
Q Consensus       285 a-~~l~~~m  292 (311)
                      | .++++.|
T Consensus       283 a~~~~~~~~  291 (336)
T 1p5q_A          283 REKKLYANM  291 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            7 4456655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.28  E-value=1.1e-05  Score=58.28  Aligned_cols=90  Identities=6%  Similarity=-0.081  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |...-..+.+.| ++++|++.|++..+ .+.+...|..+..++.+.|++++|...++... +.+ +.+...|..+..+|.
T Consensus        16 ~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           16 EKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI-RLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhh-hhhhHHHHHHHHHHH
Confidence            444444555555 55555555555555 33344455555555555555555555555554 332 223334444444444


Q ss_pred             hcCChhHHHHHHHh
Q 037178          145 LCGFPLDSRRVFDS  158 (311)
Q Consensus       145 ~~g~~~~A~~l~~~  158 (311)
                      ..|++++|.+.|++
T Consensus        93 ~~~~~~~A~~~~~~  106 (126)
T 4gco_A           93 AMREWSKAQRAYED  106 (126)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
Confidence            44444444444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.27  E-value=3.5e-06  Score=63.18  Aligned_cols=94  Identities=5%  Similarity=-0.103  Sum_probs=60.1

Q ss_pred             hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH
Q 037178           97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG  173 (311)
Q Consensus        97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~  173 (311)
                      ...+..+...+.+.|++++|...|+.+. +.. +.+...|..+..+|.+.|++++|...|++..   ..+...|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            3455555666666666666666666666 443 3345566666666667777777777666653   2355666677777


Q ss_pred             HHhCCChhhHHHHHHHhhh
Q 037178          174 FTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~  192 (311)
                      |.+.|++++|...|++..+
T Consensus       114 ~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            7777777777777777655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.27  E-value=1.3e-05  Score=57.87  Aligned_cols=105  Identities=9%  Similarity=-0.065  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA  209 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~  209 (311)
                      ..+..+...|.+.|++++|.+.|++..   ..+...|..+..+|.+.|++++|+..|++..+   +.|+ ...|..+..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHHHH
Confidence            345556667777777777777776643   23566777777777777777777777777655   3343 4566677777


Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      +...|++++|.+.|+...+.. +-+...+..|-
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~  122 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVR  122 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence            777777777777777776654 33445544443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.26  E-value=7.9e-06  Score=62.54  Aligned_cols=117  Identities=8%  Similarity=-0.053  Sum_probs=68.4

Q ss_pred             ccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH-HHhCCCh--h
Q 037178          108 GHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG-FTKNELY--T  181 (311)
Q Consensus       108 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~-~~~~g~~--~  181 (311)
                      ...|++++|...++... +.. +.+...+..+...|...|++++|...|++..   ..+...|..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKI-RAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHH-HHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            45566677777777666 333 3345566666677777777777777776654   2355556666666 5566666  6


Q ss_pred             hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +|...|++..+   ..|+ ...+..+...+...|++++|...+....+.
T Consensus        99 ~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALA---LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            67666666654   2233 345555666666666666666666666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.24  E-value=3e-06  Score=63.26  Aligned_cols=91  Identities=10%  Similarity=-0.093  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKAC  210 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~  210 (311)
                      .+..+...+.+.|++++|...|++..   ..+...|..+..+|...|++++|...|++...   +.| +...+..+..++
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence            34444445555555555555555432   12444455555555555555555555555443   223 233444455555


Q ss_pred             hccCChhhHHHHHHHHHH
Q 037178          211 GGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       211 ~~~g~~~~a~~~~~~m~~  228 (311)
                      ...|++++|.+.++...+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.20  E-value=1.4e-05  Score=55.43  Aligned_cols=91  Identities=4%  Similarity=-0.200  Sum_probs=42.8

Q ss_pred             HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CC--ChHHHHHHHHHH
Q 037178          100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TR--NLFQWNALVSGF  174 (311)
Q Consensus       100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~--~~~~y~~li~~~  174 (311)
                      +..+...+...|++++|...++... +.. +.+...+..+..+|.+.|++++|...|++..   ..  +...|..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH-HhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3333444444444444444444444 222 2233344444444555555555555544432   12  344555555555


Q ss_pred             HhC-CChhhHHHHHHHhhh
Q 037178          175 TKN-ELYTDVLSIFVELSS  192 (311)
Q Consensus       175 ~~~-g~~~~a~~~~~~m~~  192 (311)
                      .+. |++++|.+.+++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGG
T ss_pred             HHHhCCHHHHHHHHHHHhh
Confidence            555 666666666555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=3.8e-05  Score=53.67  Aligned_cols=95  Identities=12%  Similarity=-0.066  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      ..|..+...+...|++++|...|++...   ..| +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   80 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            3455555666666666666666666554   123 34455555666666666666666666666553 334556666666


Q ss_pred             HHHhcCCHHHHHHHHhhCCC
Q 037178          244 MYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .|.+.|++++|.+.+++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            66666666666666666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=3.1e-05  Score=56.79  Aligned_cols=96  Identities=13%  Similarity=-0.012  Sum_probs=55.7

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS  238 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  238 (311)
                      +...|..+...+...|++++|...|++..+   ..|+    ...+..+..++...|++++|...++...+.. +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            445555566666666666666666666544   3344    3455555556666666666666666655543 2345555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..+..+|...|++++|.+.|++..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666666666666666666544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.16  E-value=1.6e-05  Score=55.18  Aligned_cols=91  Identities=9%  Similarity=-0.120  Sum_probs=58.8

Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHH
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R---NLVSWNSIICG  275 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~---~~~~y~~li~~  275 (311)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+  |   +...|..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            445555566666666666666666666554 33556666666677777777777777766542  2   35566667777


Q ss_pred             HHhC-CCcchHHHHHHhh
Q 037178          276 FSEN-GFSCESFDLLIKM  292 (311)
Q Consensus       276 ~~~~-g~~~~a~~l~~~m  292 (311)
                      +... |++++|.+.+++.
T Consensus        86 ~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHH
Confidence            7777 7777777777776

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.15  E-value=9.8e-06  Score=60.40  Aligned_cols=92  Identities=8%  Similarity=-0.191  Sum_probs=45.2

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT  175 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~  175 (311)
                      .+..+...+...|++++|...|+... ... +.+...|..+..+|.+.|++++|...|++..   ..+...|..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALC-VLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH-HcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            33444444445555555555555544 322 2234444445555555555555555555433   124445555555555


Q ss_pred             hCCChhhHHHHHHHhhh
Q 037178          176 KNELYTDVLSIFVELSS  192 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~  192 (311)
                      ..|++++|...|++..+
T Consensus       101 ~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=4.1e-05  Score=67.23  Aligned_cols=192  Identities=11%  Similarity=-0.061  Sum_probs=134.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-CCCCh-----------------hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-NADLK-----------------EATGVLLQACGHEKDIEIGKRVHELVSASTQFSN  131 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~  131 (311)
                      ...+.+.| ++++|++.|.+... .+...                 ..+..+...|...|++++|.+.+..+....+-.+
T Consensus        11 a~~l~~~~-~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           11 ARRLVNEK-QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            34567889 99999999999876 11111                 1367788899999999999999988763222222


Q ss_pred             hh----hHHHHHHHHHHhcCChhHHHHHHHhcCC--------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCC-
Q 037178          132 DF----IINTRLITMYSLCGFPLDSRRVFDSLKT--------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TEL-  196 (311)
Q Consensus       132 ~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~--------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~-  196 (311)
                      +.    .+.+.+-..+...|+.++|..+++....        . -..++..+...|...|++++|..++++.... .+. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            22    2333333444456888999888876531        1 1356788999999999999999999887541 111 


Q ss_pred             -CCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          197 -KPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       197 -~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                       ++. ..+|..++..|...|++++|..+++.....    +.++.  ...+..+...+...|++++|...|.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             121 247888889999999999999999887643    21221  3567777778888899999888776554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.12  E-value=9.4e-06  Score=59.86  Aligned_cols=86  Identities=13%  Similarity=-0.044  Sum_probs=35.7

Q ss_pred             HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA  214 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g  214 (311)
                      +...+.+.|++++|...|++..   ..+...|..+..+|.+.|++++|...|++...   +.|+ ...+..+..++...|
T Consensus        24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHcC
Confidence            3334444444444444444332   11333444444444444444444444444433   1221 223334444444444


Q ss_pred             ChhhHHHHHHHHH
Q 037178          215 DVGFGSGVHGMAA  227 (311)
Q Consensus       215 ~~~~a~~~~~~m~  227 (311)
                      ++++|.+.++...
T Consensus       101 ~~~~A~~~~~~al  113 (142)
T 2xcb_A          101 DLDGAESGFYSAR  113 (142)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.11  E-value=3e-05  Score=56.30  Aligned_cols=92  Identities=7%  Similarity=-0.139  Sum_probs=43.0

Q ss_pred             hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHH
Q 037178           98 EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGF  174 (311)
Q Consensus        98 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~  174 (311)
                      ..+..+...+...|++++|...++... ... +.+...+..+..+|...|++++|...|++..   ..+...|..+..++
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHH-hhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            334444444444444444444444444 222 2233344444444445555555554444432   12344555555555


Q ss_pred             HhCCChhhHHHHHHHhh
Q 037178          175 TKNELYTDVLSIFVELS  191 (311)
Q Consensus       175 ~~~g~~~~a~~~~~~m~  191 (311)
                      ...|++++|...|++..
T Consensus        88 ~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           88 LEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            55555555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.11  E-value=4.2e-05  Score=53.46  Aligned_cols=90  Identities=8%  Similarity=-0.011  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      |..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+..+|.
T Consensus         7 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            7 LKEKGNKALSVG-NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHH
Confidence            444445555555 55555555555554 33344444444455555555555555555544 322 122334444444444


Q ss_pred             hcCChhHHHHHHHh
Q 037178          145 LCGFPLDSRRVFDS  158 (311)
Q Consensus       145 ~~g~~~~A~~l~~~  158 (311)
                      +.|++++|.+.|++
T Consensus        84 ~~~~~~~A~~~~~~   97 (118)
T 1elw_A           84 FLNRFEEAKRTYEE   97 (118)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHH
Confidence            44444444444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.10  E-value=1.5e-05  Score=58.79  Aligned_cols=92  Identities=7%  Similarity=-0.167  Sum_probs=49.9

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT  175 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~  175 (311)
                      .+..+...+.+.|++++|...|+... ... +.+...|..+..+|.+.|++++|...|++..   ..+...|..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALC-MLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34444444555555555555555555 332 2344455555555556666666666555543   224455555666666


Q ss_pred             hCCChhhHHHHHHHhhh
Q 037178          176 KNELYTDVLSIFVELSS  192 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~  192 (311)
                      ..|++++|...|++..+
T Consensus        98 ~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666666544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.10  E-value=1.5e-05  Score=56.99  Aligned_cols=94  Identities=10%  Similarity=-0.015  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC--CCc----HHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL--IGD----VFVSNA  240 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~  240 (311)
                      |..+...+...|++++|...|++... .. ..+...+..+...+...|++++|...++...+...  .++    ..++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44444444455555555555554433 11 11233444444444555555555555544443321  011    344455


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCC
Q 037178          241 LIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       241 li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +...|.+.|++++|.+.|++..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHH
Confidence            5555555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.10  E-value=3e-05  Score=58.50  Aligned_cols=93  Identities=9%  Similarity=-0.021  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM  244 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  244 (311)
                      .|..+...+.+.|++++|...|++..+   ..| +...|..+..++.+.|++++|...++...+.. +.+...|..+..+
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344444444444555555555444433   122 23344444444455555555555555444443 2234445555555


Q ss_pred             HHhcCCHHHHHHHHhhCC
Q 037178          245 YGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~  262 (311)
                      |.+.|++++|.+.|++..
T Consensus        89 ~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHH
Confidence            555555555555555444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=3.4e-05  Score=67.80  Aligned_cols=188  Identities=8%  Similarity=-0.172  Sum_probs=137.9

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCCC-ch---------------hhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQFS-ND---------------FIINTRLITMYSLCGFPLDSRRVFDSLKT-----R  162 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~~-~~---------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~  162 (311)
                      .+.+...|++++|.+.|..+. +..-. .+               ...+..|...|.+.|++++|.+.+....+     +
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            344567899999999999988 43211 11               12467799999999999999999988752     1


Q ss_pred             Ch----HHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCC---
Q 037178          163 NL----FQWNALVSGFTKNELYTDVLSIFVELSS---DTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGL---  231 (311)
Q Consensus       163 ~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---  231 (311)
                      +.    ...+.+-..+...|+.++|..++++...   ..+..+. ..++..+...+...|++++|..+++.+...-.   
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11    2344444555567899999999887643   1333333 34677889999999999999999998765411   


Q ss_pred             --CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          232 --IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RN-----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       232 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                        .....+|..++..|...|++++|..++++...     ++     ...|..+...+...|++++|...|.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence              22357899999999999999999999987653     22     245677777888899999998888776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.09  E-value=7.5e-06  Score=60.86  Aligned_cols=58  Identities=9%  Similarity=-0.044  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      .++..+...|...|++++|...|++..+     .+    ...+..+...+...|++++|.+.+++..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455556666666666666666655431     11    1245555555555666666666555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.08  E-value=6.4e-05  Score=54.46  Aligned_cols=96  Identities=6%  Similarity=-0.095  Sum_probs=49.9

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL  241 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  241 (311)
                      +...|..+...+...|++++|...|++...   ..| +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            344455555555555555555555555443   122 23445555555555555555555555555543 2344555555


Q ss_pred             HHHHHhcCCHHHHHHHHhhCC
Q 037178          242 IAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       242 i~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ...|...|++++|...|++..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH
Confidence            555555555555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3e-05  Score=55.56  Aligned_cols=95  Identities=6%  Similarity=-0.067  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      ..|..+...+.+.|++++|...|++..+   ..| +...|..+..++.+.|++++|...++...+.. +.+...|..+..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            4577777888888888888888888765   334 45677788888888888888888888888775 446778888888


Q ss_pred             HHHhcCCHHHHHHHHhhCCC
Q 037178          244 MYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +|...|++++|.+.|++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH
Confidence            88888888888888887654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.06  E-value=2.4e-05  Score=55.89  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      .|..+...+.+.|++++|.+.|++..
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33444444444444444444444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.06  E-value=4.5e-05  Score=54.66  Aligned_cols=91  Identities=4%  Similarity=-0.134  Sum_probs=43.9

Q ss_pred             HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 037178          100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTK  176 (311)
Q Consensus       100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~  176 (311)
                      |......+.+.|++++|...|++.. +.. +.+...|..+..+|.+.|++++|...|++..   ..+...|..+..++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3333444444455555555555444 222 2234444445555555555555555554432   1234455555555555


Q ss_pred             CCChhhHHHHHHHhhh
Q 037178          177 NELYTDVLSIFVELSS  192 (311)
Q Consensus       177 ~g~~~~a~~~~~~m~~  192 (311)
                      .|++++|...|++..+
T Consensus        85 ~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           85 VKEYASALETLDAART  100 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHH
Confidence            5555555555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=4.9e-05  Score=54.87  Aligned_cols=91  Identities=7%  Similarity=-0.013  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--------chH
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--------FTF  203 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~t~  203 (311)
                      .+..|...+.+.|++++|...|++..   ..+...|+.+..+|.+.|++++|++.|++..+   +.|+.        .+|
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHHHH
Confidence            34445555555555555555555432   22445555555566666666666655555433   11111        133


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHH
Q 037178          204 PCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       204 ~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      ..+-.++...|++++|.+.++...+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444444555555555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.05  E-value=2.6e-05  Score=55.86  Aligned_cols=93  Identities=9%  Similarity=-0.016  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .+..+...+.+.| ++++|+..|++..+ .+.+...|..+..++...|+.++|...+++.. +.. +.+...+..+..+|
T Consensus        19 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~-P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLD-PKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHH
Confidence            4556667788888 89999998888888 55567778888888888888888888888887 544 33456677788888


Q ss_pred             HhcCChhHHHHHHHhcC
Q 037178          144 SLCGFPLDSRRVFDSLK  160 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~  160 (311)
                      .+.|++++|...|++..
T Consensus        96 ~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           96 TNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            88888888888887754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=9.3e-05  Score=54.15  Aligned_cols=96  Identities=9%  Similarity=-0.090  Sum_probs=73.9

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT  137 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  137 (311)
                      +...|..+...+...| ++++|...|++..+..|+    ...+..+...+...|++++|...++... +.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCG-DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hhC-ccCHHHHH
Confidence            4456778888888999 999999999998885555    5677777778888888888888888887 443 33556666


Q ss_pred             HHHHHHHhcCChhHHHHHHHhcC
Q 037178          138 RLITMYSLCGFPLDSRRVFDSLK  160 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~l~~~m~  160 (311)
                      .+..+|...|++++|...|++..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            77778888888888888877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.04  E-value=2.8e-05  Score=58.66  Aligned_cols=92  Identities=12%  Similarity=-0.027  Sum_probs=48.7

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      .|..+-..+.+.| ++++|+..|++... .+.+...|..+..++...|++++|...++... +.. +.+...|..+..+|
T Consensus        13 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           13 KLKSEGNAAMARK-EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVD-PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHH
Confidence            4555555555666 66666666666555 33344555555555555555555555555555 332 22344444455555


Q ss_pred             HhcCChhHHHHHHHhc
Q 037178          144 SLCGFPLDSRRVFDSL  159 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m  159 (311)
                      .+.|++++|...|++.
T Consensus        90 ~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHH
Confidence            5555555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.03  E-value=3.5e-05  Score=69.14  Aligned_cols=114  Identities=7%  Similarity=-0.119  Sum_probs=56.3

Q ss_pred             hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhh
Q 037178          106 ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTD  182 (311)
Q Consensus       106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~  182 (311)
                      .+.+.|++++|.+.+++.. +.. +.+..+|..+..+|.+.|++++|.+.|++..   ..+...|..+..+|.+.|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAI-ELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4455666666666666665 332 2234555555666666666666666655543   1244555555555555566666


Q ss_pred             HHHHHHHhhhcCCCCCC-cchHHHHHHH--HhccCChhhHHHHHH
Q 037178          183 VLSIFVELSSDTELKPD-NFTFPCVIKA--CGGIADVGFGSGVHG  224 (311)
Q Consensus       183 a~~~~~~m~~~~~~~p~-~~t~~~li~~--~~~~g~~~~a~~~~~  224 (311)
                      |.+.|++..+   ..|+ ...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6655555544   1222 1223233222  444555555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.03  E-value=0.00035  Score=58.62  Aligned_cols=199  Identities=10%  Similarity=0.023  Sum_probs=149.3

Q ss_pred             ccHHHHHHHHHhcC-CCHHHHHHHHHhhcc-CCCChhhHHHHHHhc----ccC---CChhHHHHHHHHHHhhcCCCchhh
Q 037178           64 LHFLQEITTLCEES-KSLNKALSLLQENLH-NADLKEATGVLLQAC----GHE---KDIEIGKRVHELVSASTQFSNDFI  134 (311)
Q Consensus        64 ~~~~~li~~~~~~g-~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~g~~~~~~  134 (311)
                      ..||.--..+...| ..++++++.++.+.. .+-+..+|+.--..+    ...   ++++++..+++.+. +.. +.+..
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l-~~~-pkny~  145 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML-SSD-PKNHH  145 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH-HHC-TTCHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH-HhC-CCCHH
Confidence            34666555555555 489999999999998 555556665544443    334   78999999999999 554 56778


Q ss_pred             HHHHHHHHHHhcCChh--HHHHHHHhcCC---CChHHHHHHHHHHHhCCC------hhhHHHHHHHhhhcCCCCC-Ccch
Q 037178          135 INTRLITMYSLCGFPL--DSRRVFDSLKT---RNLFQWNALVSGFTKNEL------YTDVLSIFVELSSDTELKP-DNFT  202 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~--~A~~l~~~m~~---~~~~~y~~li~~~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~t  202 (311)
                      +|+.-.-.+.+.|.++  ++++.++++.+   .|-.+|+.-...+.+.|+      ++++++.++++..   ..| |...
T Consensus       146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~Sa  222 (306)
T 3dra_A          146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPST  222 (306)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHH
T ss_pred             HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccH
Confidence            8888888888889888  99999998874   477888887777777776      8899999998876   345 4566


Q ss_pred             HHHHHHHHhccCChhh-HHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh
Q 037178          203 FPCVIKACGGIADVGF-GSGVHGMAAKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-RNLV  267 (311)
Q Consensus       203 ~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~  267 (311)
                      |+.+-..+.+.|+... +..+...+.+.+  -+.+...+..+.+.|.+.|+.++|.++++.+.+ -|++
T Consensus       223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi  291 (306)
T 3dra_A          223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI  291 (306)
T ss_dssp             HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence            7777777777777444 555666655432  134778999999999999999999999999874 3543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.02  E-value=3.3e-05  Score=68.90  Aligned_cols=118  Identities=12%  Similarity=-0.010  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLKT--R-N---------------LFQWNALVSGFTKNELYTDVLSIFVELSSDTE  195 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~  195 (311)
                      ..+..+...|.+.|++++|...|++..+  | +               ...|..+..+|.+.|++++|+..|++..+   
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~---  345 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG---  345 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence            3455556666666666666666665431  1 2               35556666666666666666666666544   


Q ss_pred             CCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178          196 LKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       196 ~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      +.| +...|..+-.++...|++++|...|++..+.. +-+..++..+..++.+.|+.+++.
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            223 23455555556666666666666666555443 224455555555555555555544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.02  E-value=0.00063  Score=61.19  Aligned_cols=201  Identities=12%  Similarity=-0.018  Sum_probs=140.0

Q ss_pred             HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH-HHHHH
Q 037178           80 LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS-RRVFD  157 (311)
Q Consensus        80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A-~~l~~  157 (311)
                      .+.+..+|+++.. .+.+...|...+..+.+.|+++.|..+++... ..  +.+...+.    .|+...+.++. ..+.+
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~--P~~~~l~~----~y~~~~e~~~~~~~l~~  267 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM--SDGMFLSL----YYGLVMDEEAVYGDLKR  267 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence            3457788999888 77778888888888889999999999999999 55  44443333    23332222222 12222


Q ss_pred             hcC--C-------C---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH--HHHHHHhccCChhhHHHHH
Q 037178          158 SLK--T-------R---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP--CVIKACGGIADVGFGSGVH  223 (311)
Q Consensus       158 ~m~--~-------~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~--~li~~~~~~g~~~~a~~~~  223 (311)
                      ...  +       +   ....|-..+.-..+.|..+.|..+|++... .+  .+...|.  +.+...+ .++.+.|..+|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~~ar~if  343 (493)
T 2uy1_A          268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRATPYNIF  343 (493)
T ss_dssp             HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSHHHHHHH
T ss_pred             HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChHHHHHHH
Confidence            211  0       1   124566677776677889999999999832 22  2223333  2222222 33799999999


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178          224 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       224 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~  293 (311)
                      +...+.. +-+...+...++...+.|+.+.|..+|+... .....|...+.--...|+.+.+.++++++.
T Consensus       344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9988764 3345567778888899999999999999985 467789999888888999999999998883

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.01  E-value=8.2e-05  Score=61.37  Aligned_cols=136  Identities=9%  Similarity=-0.084  Sum_probs=101.0

Q ss_pred             HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-C----hHHHHHHHHHHH
Q 037178          101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR-N----LFQWNALVSGFT  175 (311)
Q Consensus       101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~----~~~y~~li~~~~  175 (311)
                      ......+...|++++|.++|+.+. ..+  |+....-.+-..+.+.|++++|+..|+...+. +    ...+..+-.++.
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~-~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAP-VAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSC-CTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-hcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            345566778899999999998887 433  43335555677888999999999999866542 2    346788888999


Q ss_pred             hCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          176 KNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      +.|++++|++.|++... ....|..  ......-.++.+.|+.++|..+|+++....  |+..++..|.
T Consensus       183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~  248 (282)
T 4f3v_A          183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK  248 (282)
T ss_dssp             HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence            99999999999999875 4433542  345667777889999999999999998875  3355555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.00  E-value=3.4e-05  Score=57.19  Aligned_cols=58  Identities=14%  Similarity=-0.008  Sum_probs=24.9

Q ss_pred             HHHHHHhcccCCChhHHHHHHHHHHhhcCC---Cc--hhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178          100 TGVLLQACGHEKDIEIGKRVHELVSASTQF---SN--DFIINTRLITMYSLCGFPLDSRRVFDS  158 (311)
Q Consensus       100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~---~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~  158 (311)
                      +..+...+...|++++|...+++.. +..-   .+  -..++..+...|...|++++|.+.|++
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444555555555554444 2110   00  012344444455555555555554444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.00  E-value=4.5e-05  Score=59.49  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-Ch----------------hhHHHHHHhcccCCChhHHHHHHHHHHhh
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNAD-LK----------------EATGVLLQACGHEKDIEIGKRVHELVSAS  126 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  126 (311)
                      ..|..+-..+...| ++++|+..|++.....| +.                ..|..+..++...|++++|...++... +
T Consensus        39 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~  116 (198)
T 2fbn_A           39 FDIKEEGNEFFKKN-EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL-K  116 (198)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H
Confidence            35677778888999 99999999999887222 22                334444444444444444444444444 2


Q ss_pred             cCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178          127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDS  158 (311)
Q Consensus       127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~  158 (311)
                      .. +.+...+..+..+|...|++++|.+.|++
T Consensus       117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A          117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            21 22233333344444444444444444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.97  E-value=3.6e-05  Score=65.76  Aligned_cols=122  Identities=5%  Similarity=-0.093  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc------------------chHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDN------------------FTFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~------------------~t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      |..+...+.+.|++++|...|++...   ..|+.                  ..|..+..++.+.|++++|...++...+
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44445555555555555555555433   22322                  2678888899999999999999999988


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH-HHhCCCcchHHHHHHhh
Q 037178          229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICG-FSENGFSCESFDLLIKM  292 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~-~~~~g~~~~a~~l~~~m  292 (311)
                      .. +.+...|..+..+|...|++++|...|++..+  | +..++..+... ....+..+++.++|.+|
T Consensus       259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75 45788999999999999999999999999986  3 34455555554 34566778888899888

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.94  E-value=0.00014  Score=52.04  Aligned_cols=89  Identities=10%  Similarity=-0.034  Sum_probs=45.7

Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc----hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHH
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSDTELKPDNF----TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALI  242 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li  242 (311)
                      +...+.+.|++++|...|++..+   ..|+..    .+..+..++.+.|++++|...++...+.. +.+   ...+..+.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLE---LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH---HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH---HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            33444555555555555555543   123222    44445555555556666665555555543 112   34455555


Q ss_pred             HHHHhcCCHHHHHHHHhhCC
Q 037178          243 AMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .+|.+.|++++|...|++..
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            55556666666666555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.94  E-value=4.1e-05  Score=54.80  Aligned_cols=84  Identities=4%  Similarity=-0.117  Sum_probs=35.9

Q ss_pred             HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178          208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~  284 (311)
                      ..+.+.|++++|...++...+.. +.+...|..+..++.+.|++++|...|++..+  | +...|..+...|.+.|++++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            33444444444444444444432 22344444444444444444444444444332  2 22344444444444444444


Q ss_pred             HHHHHHhh
Q 037178          285 SFDLLIKM  292 (311)
Q Consensus       285 a~~l~~~m  292 (311)
                      |.+.+++.
T Consensus       104 A~~~~~~a  111 (121)
T 1hxi_A          104 ALASLRAW  111 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.93  E-value=4.5e-05  Score=55.09  Aligned_cols=59  Identities=8%  Similarity=-0.089  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA  227 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~  227 (311)
                      ++..+...+.+.|++++|++.|++..+   +.|+ ...|..+-.++.+.|++++|.+.++...
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            344455555555555555555555443   2232 2334444444555555555555444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.87  E-value=2.6e-05  Score=69.98  Aligned_cols=118  Identities=7%  Similarity=-0.076  Sum_probs=93.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC  146 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~  146 (311)
                      .+-..+.+.| ++++|++.|++..+ .+.+...|..+..++.+.|++++|...+++.. +.. +.+...+..+..+|.+.
T Consensus        11 ~lg~~~~~~g-~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~-p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           11 TQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSTTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHc
Confidence            3344556788 99999999999999 66668899999999999999999999999998 654 44677888899999999


Q ss_pred             CChhHHHHHHHhcCC--C-ChHHHHHHHHH--HHhCCChhhHHHHHH
Q 037178          147 GFPLDSRRVFDSLKT--R-NLFQWNALVSG--FTKNELYTDVLSIFV  188 (311)
Q Consensus       147 g~~~~A~~l~~~m~~--~-~~~~y~~li~~--~~~~g~~~~a~~~~~  188 (311)
                      |++++|.+.|++..+  | +...+..+..+  +.+.|++++|.+.++
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999998652  3 44566666665  888899999999998

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.86  E-value=0.00013  Score=65.12  Aligned_cols=143  Identities=9%  Similarity=-0.112  Sum_probs=95.1

Q ss_pred             cCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----------------cchHHHH
Q 037178          146 CGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----------------NFTFPCV  206 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----------------~~t~~~l  206 (311)
                      .+++++|...|+...+   .....|..+...+.+.|++++|...|++..+   +.|+                ...|..+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHHHHHHHHH
Confidence            3445555555543321   2455677777777788888888888877655   2333                3567777


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcc
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSC  283 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~  283 (311)
                      ..++.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...|++..+  | +..+|..+...+.+.|+.+
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            777778888888888887777765 44677777777788888888888888877764  2 4456777777777777776


Q ss_pred             hHHH-HHHhh
Q 037178          284 ESFD-LLIKM  292 (311)
Q Consensus       284 ~a~~-l~~~m  292 (311)
                      ++.+ +++.|
T Consensus       403 ~a~~~~~~~~  412 (457)
T 1kt0_A          403 ERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            6653 44544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.81  E-value=0.00015  Score=62.65  Aligned_cols=118  Identities=8%  Similarity=-0.037  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC-------------------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT-------------------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE  195 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~-------------------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~  195 (311)
                      .+..+...|.+.|++++|.+.|++..+                   .+...|..+..+|.+.|++++|.+.+++..+   
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~---  301 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE---  301 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence            456677777888888888887776543                   1345677777788888888888888877765   


Q ss_pred             CCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178          196 LKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK  256 (311)
Q Consensus       196 ~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  256 (311)
                      +.|+ ...|..+..++...|++++|.+.+++..+.. +.+...+..+...+.+.++.+++.+
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3443 4567777777778888888888887777664 3356666777777777776666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.80  E-value=2.3e-05  Score=55.55  Aligned_cols=82  Identities=6%  Similarity=-0.137  Sum_probs=42.6

Q ss_pred             CCChhHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHH
Q 037178          110 EKDIEIGKRVHELVSASTQ--FSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVL  184 (311)
Q Consensus       110 ~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~  184 (311)
                      .|++++|...|++.. +.+  -+.+...+..+..+|.+.|++++|...|++..   ..+...|..+..++.+.|++++|.
T Consensus         3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            455666666666665 432  12234455555556666666666666665543   124455555555666666666666


Q ss_pred             HHHHHhhh
Q 037178          185 SIFVELSS  192 (311)
Q Consensus       185 ~~~~~m~~  192 (311)
                      ..|++...
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.77  E-value=1.6e-05  Score=56.38  Aligned_cols=84  Identities=8%  Similarity=-0.063  Sum_probs=40.0

Q ss_pred             CCChhhHHHHHHHhhhcCCC-CC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178          177 NELYTDVLSIFVELSSDTEL-KP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       177 ~g~~~~a~~~~~~m~~~~~~-~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  254 (311)
                      .|++++|...|++..+ .+. .| +...+..+...+...|++++|...+++..+.. +-+..++..+..+|.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            3455555555555544 210 12 22344455555555555555555555555543 23445555555555555555555


Q ss_pred             HHHHhhCC
Q 037178          255 VKLFEVMP  262 (311)
Q Consensus       255 ~~~~~~m~  262 (311)
                      ...|++..
T Consensus        81 ~~~~~~al   88 (117)
T 3k9i_A           81 VELLLKII   88 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.76  E-value=7e-05  Score=67.16  Aligned_cols=121  Identities=7%  Similarity=-0.177  Sum_probs=92.0

Q ss_pred             HHHHhCCChhhHHHHHHHhhhc--CCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHHHH
Q 037178          172 SGFTKNELYTDVLSIFVELSSD--TELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVFVS  238 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~--~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~  238 (311)
                      ..+...|++++|..++++..+.  .-+.|+    ..+++.|..+|...|++++|..++++..+-     |  .+-...++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456789999999998876431  223333    257889999999999999999988887643     2  22246788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-------C---Ch-hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          239 NALIAMYGKCAFVEEMVKLFEVMPE-------R---NL-VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       239 ~~li~~~~~~g~~~~A~~~~~~m~~-------~---~~-~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +.|...|...|++++|+.++++..+       +   ++ .+.+.+-.++...+++++|+.++.++
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887763       2   22 35677778888899999999999998

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.76  E-value=0.0037  Score=52.89  Aligned_cols=213  Identities=8%  Similarity=-0.049  Sum_probs=147.1

Q ss_pred             HHhcCCCHHHHHHHHHhhccCCCChh-hHHHHHHhcccCCC----------hhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178           73 LCEESKSLNKALSLLQENLHNADLKE-ATGVLLQACGHEKD----------IEIGKRVHELVSASTQFSNDFIINTRLIT  141 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~g~~~~~~~~~~ll~  141 (311)
                      ..+.|...++|+++++.+....|+.. .|+.--..+...+.          ++++..+++.+. ... +-+..+|+.---
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L-~~~-PKny~aW~hR~w  116 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RVN-PKSYGTWHHRCW  116 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH-HhC-CCCHHHHHHHHH
Confidence            34556244589999999999555544 45543333333232          578888888888 544 557778887777


Q ss_pred             HHHhcC--ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCC-hhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc-
Q 037178          142 MYSLCG--FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNEL-YTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI-  213 (311)
Q Consensus       142 ~~~~~g--~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~-  213 (311)
                      .+.+.|  .++++..+++.+.+   +|-.+|+.-.-.+...|. ++++++.++++.+ .  .| |...|+.....+.+. 
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~--~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-R--NFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHHS
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHhh
Confidence            777877  48999999998863   577889888888888888 5899999999877 3  34 344455444444433 


Q ss_pred             -------------CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHhhCCC--CChh
Q 037178          214 -------------ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-----------AFVEEMVKLFEVMPE--RNLV  267 (311)
Q Consensus       214 -------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~--~~~~  267 (311)
                                   +.++++.+.+....... +-|...|+-+-..+.+.           +.++++.+.++++.+  ||- 
T Consensus       194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-  271 (331)
T 3dss_A          194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-  271 (331)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred             hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence                         45788888888888776 66888888776666665           467889999988874  654 


Q ss_pred             hHHHHHH-----HHHhCCCcchHHHHHHhh
Q 037178          268 SWNSIIC-----GFSENGFSCESFDLLIKM  292 (311)
Q Consensus       268 ~y~~li~-----~~~~~g~~~~a~~l~~~m  292 (311)
                      .|+.+-.     +.-..|..+++...+.++
T Consensus       272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l  301 (331)
T 3dss_A          272 KWCLLTIILLMRALDPLLYEKETLQYFSTL  301 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            3443222     222456777888888877

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.74  E-value=0.00035  Score=49.85  Aligned_cols=54  Identities=9%  Similarity=0.006  Sum_probs=24.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-CCCCh---hhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-NADLK---EATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ...+.+.| ++++|...|++... .+.+.   ..+..+..++...|++++|...++.+.
T Consensus         9 a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~   66 (129)
T 2xev_A            9 AFDALKNG-KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV   66 (129)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34444555 55555555555544 22222   234444444444555555555555444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.64  E-value=0.00016  Score=61.70  Aligned_cols=143  Identities=8%  Similarity=-0.163  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      .|..+-..+.+.| ++++|+..|++.....|+...       +...++.+++..   .+.        ...|..+..+|.
T Consensus       181 ~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~---~l~--------~~~~~nla~~~~  241 (338)
T 2if4_A          181 RRKMDGNSLFKEE-KLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMAL---AVK--------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHTCSSS-CCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHH---HHH--------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHH---HHH--------HHHHHHHHHHHH
Confidence            4666667777788 888888888887763343321       112222222211   111        135666777888


Q ss_pred             hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHH-HhccCChhhH
Q 037178          145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKA-CGGIADVGFG  219 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~-~~~~g~~~~a  219 (311)
                      +.|++++|...|++..   ..+...|..+..+|...|++++|...|++..+   +.|+. ..+..+... ....+..+++
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887754   23667788888888888888888888888754   44543 334444333 2344566677


Q ss_pred             HHHHHHHHHh
Q 037178          220 SGVHGMAAKM  229 (311)
Q Consensus       220 ~~~~~~m~~~  229 (311)
                      ..++..|...
T Consensus       319 ~~~~~~~l~~  328 (338)
T 2if4_A          319 KEMYKGIFKG  328 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHhhCC
Confidence            7777777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.63  E-value=5.6e-05  Score=52.49  Aligned_cols=92  Identities=9%  Similarity=-0.075  Sum_probs=56.4

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-------hhH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-------FII  135 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------~~~  135 (311)
                      ..|..+-..+...| ++++|+..|++..+ .+.+...+..+..++...|++++|...++... +..  |+       ...
T Consensus         5 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~~~~   80 (111)
T 2l6j_A            5 EKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYT--STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSC--SSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC--CCccHHHHHHHH
Confidence            34566666677777 77777777777766 44556666666667777777777777777766 332  22       334


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhc
Q 037178          136 NTRLITMYSLCGFPLDSRRVFDSL  159 (311)
Q Consensus       136 ~~~ll~~~~~~g~~~~A~~l~~~m  159 (311)
                      +..+..++...|+.+.|...|+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHh
Confidence            444555555555555555544443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=5.2e-05  Score=52.66  Aligned_cols=90  Identities=2%  Similarity=-0.277  Sum_probs=46.2

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------hhhHHHH
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-------LVSWNSI  272 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------~~~y~~l  272 (311)
                      .+..+...+...|++++|.+.++...+.. +.+...+..+..+|.+.|++++|.+.+++..+  |+       ...+..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            34444455555555555555555555443 33455555555566666666666666655543  22       2334444


Q ss_pred             HHHHHhCCCcchHHHHHHhh
Q 037178          273 ICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       273 i~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..++...|+.+.|.+.++++
T Consensus        85 ~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           85 ELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHhHhhhHhHHHHh
Confidence            44555555555554444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.61  E-value=0.00049  Score=51.49  Aligned_cols=93  Identities=9%  Similarity=-0.062  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-------------cchHHHHHHHHhccCChhhHHHHHHHHHHh----
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPD-------------NFTFPCVIKACGGIADVGFGSGVHGMAAKM----  229 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----  229 (311)
                      +......+.+.|++++|+..|++..+   +.|+             ...|..+-.++.+.|++++|...+++.++.    
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            34445556666777777777766654   2333             116666777777777777777777776664    


Q ss_pred             -CCCC-cHHHH----HHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          230 -GLIG-DVFVS----NALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       230 -g~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                       .+.| +...|    .....++...|++++|...|++..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence             1123 45566    777777778888888888777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.58  E-value=0.00015  Score=62.74  Aligned_cols=122  Identities=6%  Similarity=-0.086  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHhhhcC-------------CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          165 FQWNALVSGFTKNELYTDVLSIFVELSSDT-------------ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      ..|..+...+.+.|++++|...|++..+..             ...| +...|..+..++.+.|++++|.+.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            457888899999999999999998875300             0223 34678888899999999999999999998765


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHH
Q 037178          231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                       +.+...|..+..+|.+.|++++|.+.|++..+  | +...+..+...+...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             44788899999999999999999999998874  4 55677777777777776666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.58  E-value=0.0042  Score=59.00  Aligned_cols=158  Identities=11%  Similarity=0.048  Sum_probs=116.7

Q ss_pred             HHHHHhcCCCHHHHHH-HHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           70 ITTLCEESKSLNKALS-LLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~-~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      .......+ ++++|.+ ++..+.    +......+++.+.+.|..+.|.++.+.-.             .-.......|+
T Consensus       606 ~~~~~~~~-~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~  667 (814)
T 3mkq_A          606 FQTLTLRG-EIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHHTT-CHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTC
T ss_pred             HhHHHHhC-CHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCC
Confidence            34445678 9999987 553333    12333777777788888888776653221             11345577899


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178          149 PLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       149 ~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  228 (311)
                      +++|.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..          |..+...+...|+.+...++-+....
T Consensus       668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999988774  557899999999999999999999999976          66777777778888887777777666


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .|      -++....+|.+.|++++|.+++.++.+
T Consensus       736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~  764 (814)
T 3mkq_A          736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQR  764 (814)
T ss_dssp             TT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             cC------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence            66      235555667778888888888888776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.57  E-value=0.00048  Score=51.60  Aligned_cols=60  Identities=7%  Similarity=-0.116  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      ..+|..+..+|.+.|++++|...+++..   ..+...|..+..+|...|++++|...|++...
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            3455556666666666666666665543   23455566666666666666666666666544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.55  E-value=0.00059  Score=51.08  Aligned_cols=62  Identities=6%  Similarity=-0.115  Sum_probs=41.1

Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..|..+..++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            456666666667777777777777666654 44566666677777777777777777766553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.55  E-value=0.00013  Score=65.36  Aligned_cols=97  Identities=2%  Similarity=-0.238  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc--CCCCCC
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSD--TELKPD  199 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~p~  199 (311)
                      ..+++.|...|...|++++|+.++++..+          | ...+++.|...|...|++++|..++++..+-  .-..||
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34555566666666666666555554321          1 2245666666666666666666666554220  112232


Q ss_pred             c----chHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          200 N----FTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       200 ~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      .    .+...+-.++...+.+++|+.++.++++.
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    23445555666677777777777776653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.40  E-value=0.0041  Score=52.91  Aligned_cols=201  Identities=13%  Similarity=-0.024  Sum_probs=139.6

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccC-C-ChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHE-K-DIEIGKRVHELVSASTQFSNDFIINTR  138 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~g~~~~~~~~~~  138 (311)
                      +...||.--..+...|..+++++++++.+.. .+-+..+|+.-...+.+. + +.+++.++++.+. +.. +.+..+|+.
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L-~~d-pkNy~AW~~  164 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL-LPD-PKNYHTWAY  164 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT-SSC-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HhC-CCCHHHHHH
Confidence            4445777666666667249999999999998 666667777766665555 5 7899999999998 544 557777776


Q ss_pred             HHHHHHhcCChh--------HHHHHHHhcCC---CChHHHHHHHHHHHhCCC-------hhhHHHHHHHhhhcCCCCCC-
Q 037178          139 LITMYSLCGFPL--------DSRRVFDSLKT---RNLFQWNALVSGFTKNEL-------YTDVLSIFVELSSDTELKPD-  199 (311)
Q Consensus       139 ll~~~~~~g~~~--------~A~~l~~~m~~---~~~~~y~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~p~-  199 (311)
                      -.-.+.+.|.++        ++.+.++++.+   .|..+|+.....+.+.++       ++++++.+++...   ..|+ 
T Consensus       165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n  241 (349)
T 3q7a_A          165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHN  241 (349)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTC
T ss_pred             HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCC
Confidence            666666666666        88888887763   478899998888888876       6888888888765   4454 


Q ss_pred             cchHHHHHHHHhccCCh--------------------hhHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHhcCCHHHH
Q 037178          200 NFTFPCVIKACGGIADV--------------------GFGSGVHGMAAKMG-----LIGDVFVSNALIAMYGKCAFVEEM  254 (311)
Q Consensus       200 ~~t~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A  254 (311)
                      ...|+-+-..+.+.|+-                    .....+...+...+     -.++......+.+.|...|+.++|
T Consensus       242 ~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a  321 (349)
T 3q7a_A          242 VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDA  321 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHH
Confidence            44555544444444432                    22333333332222     135788999999999999999999


Q ss_pred             HHHHhhCC-CCChh
Q 037178          255 VKLFEVMP-ERNLV  267 (311)
Q Consensus       255 ~~~~~~m~-~~~~~  267 (311)
                      .++++.+. +-|++
T Consensus       322 ~~~~~~l~~~~dpi  335 (349)
T 3q7a_A          322 AKVFEKLSSEYDQM  335 (349)
T ss_dssp             HHHHHHHHHTTCGG
T ss_pred             HHHHHHHHhhhChH
Confidence            99999986 44553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.38  E-value=0.0046  Score=56.52  Aligned_cols=174  Identities=9%  Similarity=-0.077  Sum_probs=126.9

Q ss_pred             HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCC----------hhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKD----------IEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      .+.|...++|++.++++.. .+-+...|+.--..+...|+          ++++.+.++.+. +.. +-+..+|+.---+
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l-~~~-pK~y~aW~hR~w~  116 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RVN-PKSYGTWHHRCWL  116 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH-HhC-CCCHHHHHHHHHH
Confidence            3445256788999999998 44445567665555555565          889999999998 554 4567788878888


Q ss_pred             HHhcC--ChhHHHHHHHhcC---CCChHHHHHHHHHHHhCC-ChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc--
Q 037178          143 YSLCG--FPLDSRRVFDSLK---TRNLFQWNALVSGFTKNE-LYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI--  213 (311)
Q Consensus       143 ~~~~g--~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~--  213 (311)
                      +.+.|  +++++.+.++++.   .+|-.+|+.-..++.+.| .++++++.++++.+   ..| |...|+.....+.+.  
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~  193 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHP  193 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcc
Confidence            88888  6799999999886   357788988888888888 88999999988866   344 344555555554442  


Q ss_pred             ------------CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178          214 ------------ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       214 ------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  253 (311)
                                  +.++++.+.+....... +-|...|+-+-..+.+.|+.++
T Consensus       194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                        55677888888777765 5577888888777777776444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.36  E-value=0.0016  Score=48.70  Aligned_cols=58  Identities=7%  Similarity=0.016  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhccCCCC--------hh-----hHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLHNADL--------KE-----ATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~--------~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      +...-..+.+.| ++++|+..|++..+..|+        ..     .|.....++.+.|++++|...++...
T Consensus        14 ~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL   84 (159)
T 2hr2_A           14 ALSDAQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   84 (159)
T ss_dssp             HHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455666777888 999999999988883333        11     44445555555555555555555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.35  E-value=0.0019  Score=47.09  Aligned_cols=111  Identities=7%  Similarity=-0.035  Sum_probs=80.4

Q ss_pred             CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHH
Q 037178          178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEE  253 (311)
Q Consensus       178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~  253 (311)
                      +++++|++.|++..+ .|   +....  +-..|...+.+++|.+.++...+.|   +...+..|-..|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~-~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACE-LN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHH-TT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHc-CC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            467788888888776 55   22222  5566666677778888888877765   56677777777777    778888


Q ss_pred             HHHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCCC
Q 037178          254 MVKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       254 A~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      |.+.|++..+ -+...+..|-..|..    .++.++|.++|++.  .+.|.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A--a~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA--CRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH--HHCCC
Confidence            8888887764 466677777778877    78888888888887  55553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.27  E-value=0.0013  Score=43.46  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=48.7

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+-..+...| ++++|+..|++... .+.+...+..+...+...|++++|...+++.. +.. +.+...+..+..+
T Consensus        10 ~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCHHHHHHHHHH
Confidence            44566666677777 77777777777766 44455666666667777777777777777766 432 2234444444444


Q ss_pred             HHh
Q 037178          143 YSL  145 (311)
Q Consensus       143 ~~~  145 (311)
                      +.+
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.23  E-value=0.0014  Score=45.75  Aligned_cols=77  Identities=5%  Similarity=-0.191  Sum_probs=40.1

Q ss_pred             hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          182 DVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       182 ~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +|...|++..+   ..| +...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...|++
T Consensus         3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444554433   223 23445555555555556666665555555543 33445555555666666666666665555


Q ss_pred             CC
Q 037178          261 MP  262 (311)
Q Consensus       261 m~  262 (311)
                      ..
T Consensus        79 al   80 (115)
T 2kat_A           79 GL   80 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.19  E-value=0.003  Score=41.54  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM  244 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  244 (311)
                      .|..+...+...|++++|...|++..+ .  .| +...+..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALE-L--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            344444444555555555555554433 1  12 22344444444555555555555555544442 2233344444433


Q ss_pred             H
Q 037178          245 Y  245 (311)
Q Consensus       245 ~  245 (311)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.046  Score=41.38  Aligned_cols=130  Identities=12%  Similarity=-0.021  Sum_probs=96.9

Q ss_pred             HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      .....+.|+++.|.++.+.+  .+...|..|.....+.|+++-|.+.|.+...          |..+.--|.-.|+.+..
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence            34556789999999988877  4667899999999999999999999998876          66666677778888877


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      .++-+.....|      -++.....+.-.|+++++.++|.+.....     --+...-..|-.+.|.++.+++
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence            77766666665      24566666777899999999998877622     1222223367778888888777

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.13  E-value=0.0026  Score=44.37  Aligned_cols=75  Identities=7%  Similarity=-0.043  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +...++... +.. +.+...+..+...|.+.|++++|...|++..   ..+...|..+..+|...|++++|...|++..+
T Consensus         4 a~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAML-AQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHH-TTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444 222 2334455555555555566666555555543   22444555566666666666666666665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.09  E-value=0.0019  Score=44.09  Aligned_cols=61  Identities=20%  Similarity=0.150  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178          164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA  227 (311)
Q Consensus       164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~  227 (311)
                      ...|..+...|.+.|++++|...|++..+   ..|+ ...|..+..++...|++++|.+.+++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444455555555555555555554443   1222 2334444444444444444444444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.04  E-value=0.0007  Score=59.68  Aligned_cols=81  Identities=7%  Similarity=-0.100  Sum_probs=63.4

Q ss_pred             ccCChhhHHHHHHHHHHhC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hhHHHHH
Q 037178          212 GIADVGFGSGVHGMAAKMG---LIG----DVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------RNL-VSWNSII  273 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~-~~y~~li  273 (311)
                      ..|++++|..++++..+..   +.+    ...+++.|...|...|++++|+.++++..+          |++ .+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4577888998888876531   112    357888999999999999999998888763          333 5789999


Q ss_pred             HHHHhCCCcchHHHHHHhh
Q 037178          274 CGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       274 ~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..|...|++++|..++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHH
Confidence            9999999999999988877

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.98  E-value=0.0016  Score=44.39  Aligned_cols=62  Identities=10%  Similarity=-0.022  Sum_probs=43.0

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      +...|..+-..+.+.| ++++|+..|++..+ .+.+...|..+..++...|++++|...+++..
T Consensus         6 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445666677777777 77777777777777 44455667777777777777777777777666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.91  E-value=0.015  Score=53.13  Aligned_cols=167  Identities=4%  Similarity=-0.108  Sum_probs=125.1

Q ss_pred             ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC----------hhHHHHHHHhcCC---CChHHHHHHHHHHHhCC
Q 037178          112 DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF----------PLDSRRVFDSLKT---RNLFQWNALVSGFTKNE  178 (311)
Q Consensus       112 ~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g  178 (311)
                      .-++|.+.++.+. ..+ +-+..+|+.--.++.+.|+          ++++.+.++.+.+   .+-.+|+.-...+.+.|
T Consensus        44 ~~eeal~~~~~~l-~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQIL-GAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            3467899999988 554 3445667766666666666          8999999998763   47778888888888888


Q ss_pred             --ChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc------
Q 037178          179 --LYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC------  248 (311)
Q Consensus       179 --~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------  248 (311)
                        +++++++.++++.+   ..| |-..|+.--.++.+.| .++++.+.++.+.+.. +-|...|+.....+.+.      
T Consensus       122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence              66999999999987   334 4566777767777778 8889999998888775 45788888888777763      


Q ss_pred             --------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178          249 --------AFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE  284 (311)
Q Consensus       249 --------g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~  284 (311)
                              ++++++.+.+++..+  | |..+|+-+-..+.+.++.++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                    557888888887763  4 66788877777777776444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.89  E-value=0.015  Score=42.27  Aligned_cols=88  Identities=6%  Similarity=-0.121  Sum_probs=42.2

Q ss_pred             HHHHHHhcCChhHHHHHHHhcC-CCChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc-
Q 037178          139 LITMYSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG-  212 (311)
Q Consensus       139 ll~~~~~~g~~~~A~~l~~~m~-~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~-  212 (311)
                      |-..|...+.+++|.+.|++.. ..+...+..|-..|..    .+++++|++.|++..+ .|   +...+..|-..|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCC
Confidence            3333334444444444444432 2244444444444444    4555555555555544 32   33344444444444 


Q ss_pred             ---cCChhhHHHHHHHHHHhC
Q 037178          213 ---IADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       213 ---~g~~~~a~~~~~~m~~~g  230 (311)
                         .++.++|.++++...+.|
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               455666666666555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.87  E-value=0.018  Score=51.68  Aligned_cols=183  Identities=10%  Similarity=-0.060  Sum_probs=122.4

Q ss_pred             cccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--C------C---Cc
Q 037178           63 GLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--Q------F---SN  131 (311)
Q Consensus        63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g------~---~~  131 (311)
                      ...|-..+.-+.+.| +++.|..+|++.... |....+......+..   .++   +++.+.+..  +      .   ..
T Consensus       213 ~~lW~~ya~~~~~~~-~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---~~~---~~~~l~~~~~~~~~~~~~~~~~~~  284 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIG-QKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---EEA---VYGDLKRKYSMGEAESAEKVFSKE  284 (493)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---CTH---HHHHHHHHTC----------CHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---hhH---HHHHHHHHHHhhccchhhhhcccc
Confidence            456777777788889 999999999998887 665543222111111   122   133333111  0      0   11


Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCC--hHHHH--HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHH
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRN--LFQWN--ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCV  206 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~l  206 (311)
                      ...+|-..+..+-+.|..+.|.++|++...+.  ...|-  +.+.... .++.+.|..+|+...+..   |+ ...+...
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~---~~~~~~~~~y  360 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH---PDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC---CCCHHHHHHH
Confidence            23567777777777889999999999884342  23343  3333322 236999999999987622   33 2335556


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ++-..+.|+.+.|..+|+.+     .-....|...++.-...|+.+.+.++++++.
T Consensus       361 id~e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          361 FLFLLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHHHHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            77778889999999999986     2367889999998888999999999888765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.84  E-value=0.0017  Score=57.20  Aligned_cols=86  Identities=10%  Similarity=-0.115  Sum_probs=53.0

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hh
Q 037178          207 IKACGGIADVGFGSGVHGMAAKMG---LIG----DVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------RNL-VS  268 (311)
Q Consensus       207 i~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~-~~  268 (311)
                      +..+.+.|++++|..++++..+..   +.+    ...+++.|...|...|++++|+.++++..+          |++ .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344555667777777776665431   111    245666777777777777777777666553          222 45


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHhh
Q 037178          269 WNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       269 y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |+.|...|...|++++|..++++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            677777777777777777776665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.80  E-value=0.041  Score=46.48  Aligned_cols=185  Identities=5%  Similarity=-0.047  Sum_probs=129.3

Q ss_pred             cCCCh-hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC----------hhHHHHHHHhcC---CCChHHHHHHHHHH
Q 037178          109 HEKDI-EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF----------PLDSRRVFDSLK---TRNLFQWNALVSGF  174 (311)
Q Consensus       109 ~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~---~~~~~~y~~li~~~  174 (311)
                      +.|.+ ++|..+.+.+. ..+ +-+..+|+.--..+...|.          +++++.+++.+.   ..+-.+|+.-...+
T Consensus        41 ~~~e~s~eaL~~t~~~L-~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQIL-GAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHH-TTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45555 47899999988 443 2334455544444433333          678888888876   34778888877778


Q ss_pred             HhCCC--hhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCC-hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc--
Q 037178          175 TKNEL--YTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIAD-VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC--  248 (311)
Q Consensus       175 ~~~g~--~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--  248 (311)
                      .+.|+  +++++.+++++.+   ..| |-..|+.---.+...|. ++++.+.+..+.+.. +-|...|+.....+.+.  
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred             hccCcccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence            78774  8999999999977   334 45566666666677777 589999999999887 55788888877776665  


Q ss_pred             ------------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhC-----------CCcchHHHHHHhhhhccCCCCCC
Q 037178          249 ------------AFVEEMVKLFEVMPE--R-NLVSWNSIICGFSEN-----------GFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       249 ------------g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~-----------g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                                  +.++++++.+++...  | |..+|+=+-..+.+.           +.++++++.++++  .+  +.||
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el--le--~~pd  270 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL--QE--LEPE  270 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH--HH--HCTT
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH--Hh--hCcc
Confidence                        457888888888774  4 667777554444444           4577888888888  43  3565


Q ss_pred             c
Q 037178          303 V  303 (311)
Q Consensus       303 ~  303 (311)
                      .
T Consensus       271 ~  271 (331)
T 3dss_A          271 N  271 (331)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.78  E-value=0.017  Score=49.31  Aligned_cols=64  Identities=5%  Similarity=-0.186  Sum_probs=34.2

Q ss_pred             ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +...|.++...+...|++++|...+++... .+  |+...|..+-..+.-.|+.++|.+.+.+....
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            444555554444444566666666655555 22  45444544555555556666666555555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.71  E-value=0.0088  Score=52.65  Aligned_cols=94  Identities=10%  Similarity=0.014  Sum_probs=73.8

Q ss_pred             HHHHHHhCCChhhHHHHHHHhhhc--CCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHH
Q 037178          170 LVSGFTKNELYTDVLSIFVELSSD--TELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVF  236 (311)
Q Consensus       170 li~~~~~~g~~~~a~~~~~~m~~~--~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~  236 (311)
                      .+..+.+.|++++|..++++..+.  .-+.|+.    .+++.+..+|...|++++|..++++..+-     |  .+-...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355677889999999999988641  2233432    47899999999999999999999887643     2  222468


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +++.|...|...|++++|+.++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            899999999999999999999987653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.63  E-value=0.0078  Score=52.98  Aligned_cols=87  Identities=10%  Similarity=-0.069  Sum_probs=68.6

Q ss_pred             hCCChhhHHHHHHHhhhc--CCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHHHHHHHH
Q 037178          176 KNELYTDVLSIFVELSSD--TELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVFVSNALI  242 (311)
Q Consensus       176 ~~g~~~~a~~~~~~m~~~--~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li  242 (311)
                      ..|++++|..++++..+.  .-+.|+.    .+++.|..+|...|++++|..++++..+-     |  .+-...+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999886431  2233432    57999999999999999999999887653     2  222468899999


Q ss_pred             HHHHhcCCHHHHHHHHhhCC
Q 037178          243 AMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..|...|++++|+.++++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHH
Confidence            99999999999999998754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.51  E-value=0.0034  Score=46.83  Aligned_cols=28  Identities=14%  Similarity=0.231  Sum_probs=17.0

Q ss_pred             CChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178          178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIK  208 (311)
Q Consensus       178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~  208 (311)
                      |++++|.+.|++..+   +.|+...|...+.
T Consensus       105 g~~~eA~~~~~kAl~---l~P~~~~y~~al~  132 (158)
T 1zu2_A          105 HNFDLATQFFQQAVD---EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            467777777777655   5566555544444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.49  E-value=0.0042  Score=46.29  Aligned_cols=110  Identities=5%  Similarity=-0.170  Sum_probs=80.7

Q ss_pred             HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCCh----------hHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDI----------EIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      .+.+ .+++|...+++..+ .+.+...|..+..++...+++          ++|...|++.. +.. +-+...|..+-.+
T Consensus        13 ~r~~-~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRIL-LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHh-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhC-cCcHHHHHHHHHH
Confidence            3556 88999999999998 666788888888888877764          59999999988 655 3356678889999


Q ss_pred             HHhcC-----------ChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          143 YSLCG-----------FPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       143 ~~~~g-----------~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      |...|           ++++|.+.|++..  +|+...|...+..      .++|-+++-+...
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~  146 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYK  146 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCcccc
Confidence            98774           8999999999876  5665555444443      2445555444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.25  E-value=0.005  Score=41.42  Aligned_cols=52  Identities=6%  Similarity=-0.167  Sum_probs=23.5

Q ss_pred             HhccCChhhHHHHHHHHHHhCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          210 CGGIADVGFGSGVHGMAAKMGLIGDVF-VSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +.+.|++++|.+.++...+.. +.+.. .+..+..+|.+.|++++|.+.|++..
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444444444444444432 22333 44444444444455555544444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.24  E-value=0.059  Score=51.06  Aligned_cols=97  Identities=6%  Similarity=-0.066  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC  146 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~  146 (311)
                      ..++..+.+.| .+++|+++.+.       ..   .-+......|+++.|.++.+.+       .+...|..|...+.+.
T Consensus       633 ~~~~~~l~~~~-~~~~a~~~~~~-------~~---~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQE-YYEEALNISPD-------QD---QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHCCC-------HH---HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCC-ChHHheecCCC-------cc---hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHc
Confidence            67777777888 88888876632       11   1123345679999988885543       3567899999999999


Q ss_pred             CChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178          147 GFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       147 g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      |+++.|++.|.++.+     |..+...+...|+.+...++
T Consensus       695 ~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             TCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHH
Confidence            999999999988764     33333444444544444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.03  E-value=0.019  Score=38.46  Aligned_cols=54  Identities=20%  Similarity=0.133  Sum_probs=34.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhcc-CCCChh-hHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           70 ITTLCEESKSLNKALSLLQENLH-NADLKE-ATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      ...+.+.| ++++|+..|++..+ .+.+.. .+..+..++...|++++|...|+...
T Consensus         7 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            7 IKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455666 77777777776666 434445 66666666666677777777776666

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.90  E-value=0.28  Score=41.84  Aligned_cols=71  Identities=4%  Similarity=-0.120  Sum_probs=54.8

Q ss_pred             CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178          197 KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW  269 (311)
Q Consensus       197 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y  269 (311)
                      ..+..+|..+.-.+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.|++...  |...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence            4466777777777777789999999988888886  6777777778888888999999888887763  555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.25  E-value=0.29  Score=35.18  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC-C--CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178          237 VSNALIAMYGKCAFVEEMVKLFEVM-P--ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       237 ~~~~li~~~~~~g~~~~A~~~~~~m-~--~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      .....++.+...|+-+.-.++..++ .  +++....-.+..+|.+-|+..+|.+++.+.  .+.|+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A--C~kG~  156 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA--CKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTTC
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH--HHhhh
Confidence            3344445555555555555555553 2  234444455555555555555555555555  45554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.79  E-value=0.28  Score=32.69  Aligned_cols=47  Identities=6%  Similarity=-0.138  Sum_probs=27.7

Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            456666666665554 33455555555666666666666666666553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.58  E-value=0.42  Score=31.78  Aligned_cols=62  Identities=6%  Similarity=-0.067  Sum_probs=37.7

Q ss_pred             chhhHHHHHHHHHHhcCC---hhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          131 NDFIINTRLITMYSLCGF---PLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       131 ~~~~~~~~ll~~~~~~g~---~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      .|...+..+..++...++   .++|..+|++..   ..++.+...+...+.+.|++++|+..|+++.+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344445555555543333   566777766654   23556666667777777777777777777765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.05  E-value=0.3  Score=33.15  Aligned_cols=64  Identities=16%  Similarity=-0.125  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHhccCChhhHHHHHHHHHHhC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMG------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ..-+..|-..+.+.|+++.|...++...+.-      -.....++..|..+|.+.|++++|...+++..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3445566667777777777777777765531      134567888899999999999999999988763

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.99  E-value=1.1  Score=33.75  Aligned_cols=128  Identities=10%  Similarity=-0.012  Sum_probs=73.2

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI  186 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~  186 (311)
                      ....|+++.|.++.+.+.       +...|..|-....+.|+++-|++.|.+...     +..+.--|.-.|+.++...+
T Consensus        15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence            345677777777766542       456777788888888888888888777664     33333334445555555444


Q ss_pred             HHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       187 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      -+.-.. .|      -++.....+...|+++++.+++.+   .|--|..     . -.-...|--+.|.++.+++.
T Consensus        83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA-----~-~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLA-----Y-AVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHH-----H-HHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHH-----H-HHHHHcCcHHHHHHHHHHhC
Confidence            333332 22      255666666677777777777643   2321111     0 11112455667777766654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.81  E-value=0.45  Score=32.23  Aligned_cols=63  Identities=6%  Similarity=-0.169  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcC-----CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDT-----ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +-.|...+.+.|++..|...|++..+..     .-.+....+..+..++.+.|++++|...+++..+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4455555566666666666665543311     00122345566666666667777777666666654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.81  E-value=0.34  Score=35.65  Aligned_cols=80  Identities=10%  Similarity=-0.162  Sum_probs=53.8

Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA---DVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMV  255 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~  255 (311)
                      ..+.+-|.+... .+. ++..+...+.-++++.+   +++++..+++.+.+.. .|  ....+-.|--+|.+.|++++|.
T Consensus        15 ~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           15 LKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            344555555544 333 56666666667777776   6668888888887775 34  3455555666778888888888


Q ss_pred             HHHhhCCC
Q 037178          256 KLFEVMPE  263 (311)
Q Consensus       256 ~~~~~m~~  263 (311)
                      +.++...+
T Consensus        92 ~y~~~lL~   99 (152)
T 1pc2_A           92 KYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887763

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.66  E-value=3.4  Score=36.25  Aligned_cols=185  Identities=11%  Similarity=-0.050  Sum_probs=120.7

Q ss_pred             CCCHHHHHHHHHhhcc-------CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH--HHHHHHHHHhcC
Q 037178           77 SKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII--NTRLITMYSLCG  147 (311)
Q Consensus        77 g~~~~~a~~~~~~m~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~ll~~~~~~g  147 (311)
                      | +++.|++.+..+.+       ..........++..|...|+++...+.+..+..++|..+...+  .+.++.......
T Consensus        30 ~-~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 N-DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             H-HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             C-CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            5 77888877665554       2233445777888899999998887777777645554433322  122333333333


Q ss_pred             Chh--HHHHHHHhcCC---C-------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCC---cchHHHHHHHHh
Q 037178          148 FPL--DSRRVFDSLKT---R-------NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPD---NFTFPCVIKACG  211 (311)
Q Consensus       148 ~~~--~A~~l~~~m~~---~-------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~t~~~li~~~~  211 (311)
                      ..+  .-..+.+....   .       -......|...|-..|++.+|.+++.++... .|....   ...|...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333  23344444431   1       1123467888899999999999999998641 232222   246777888899


Q ss_pred             ccCChhhHHHHHHHHHH----hCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          212 GIADVGFGSGVHGMAAK----MGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ..+++.+|..++.....    ....|+  ...|...+..+...+++.+|.+.|.+.-
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999999988643    222332  3566777888888999999998888765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.97  E-value=1.8  Score=31.11  Aligned_cols=63  Identities=13%  Similarity=-0.025  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  231 (311)
                      .+..++.....|+-+.-.+++.++.  .+..|+....-.+..||.+.|+..++.+++.+..+.|+
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            3445555566666666666666642  12345555555666666666666666666666666664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.89  E-value=0.085  Score=46.62  Aligned_cols=210  Identities=12%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY  143 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~  143 (311)
                      ..|..|-.+..+.+ ++.+|++-|-+.    .|+..|..++.++.+.|.++.-...+...+ +..  .+..+=+.|+-+|
T Consensus        55 ~VWs~LgkAqL~~~-~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~--ke~~IDteLi~ay  126 (624)
T 3lvg_A           55 AVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIFAL  126 (624)
T ss_dssp             CCSSSHHHHTTTSS-SCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTC--CSTTTTHHHHHHH
T ss_pred             cHHHHHHHHHHccC-chHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHh--cccccHHHHHHHH
Confidence            34667777777777 666665544322    345667777777777777777766666555 332  2333345577777


Q ss_pred             HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-------------------CCCCCCcchHH
Q 037178          144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-------------------TELKPDNFTFP  204 (311)
Q Consensus       144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~p~~~t~~  204 (311)
                      +|.|++.+-++++.   .||+.-...+.+-|...|.++.|.-+|..+..-                   ..-.-+..||.
T Consensus       127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK  203 (624)
T 3lvg_A          127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK  203 (624)
T ss_dssp             HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred             HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence            77776655433222   244444444555555555555555544433220                   00112455666


Q ss_pred             HHHHHHhccCChhhH------------------------------HHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHH
Q 037178          205 CVIKACGGIADVGFG------------------------------SGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEE  253 (311)
Q Consensus       205 ~li~~~~~~g~~~~a------------------------------~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~  253 (311)
                      -+-.+|...+++..|                              ..+++.-.  |. ....-+++-|.-.|+|- +.++
T Consensus       204 eV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeK  280 (624)
T 3lvg_A          204 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQK  280 (624)
T ss_dssp             HHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred             HHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHH
Confidence            666666655554444                              44433322  21 34566777777777765 3444


Q ss_pred             HHHHHhhCCC----C-------ChhhHHHHHHHHHhCCCcchHHH
Q 037178          254 MVKLFEVMPE----R-------NLVSWNSIICGFSENGFSCESFD  287 (311)
Q Consensus       254 A~~~~~~m~~----~-------~~~~y~~li~~~~~~g~~~~a~~  287 (311)
                      .++.++-.-.    |       ....|.-++--|+.-.++|.|..
T Consensus       281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            4444433221    2       44678888888888888887654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.84  E-value=0.32  Score=39.97  Aligned_cols=114  Identities=6%  Similarity=-0.080  Sum_probs=70.2

Q ss_pred             CChhHHHHHHHhcCCCCh--HHHHHHHHH-HHhC--CC------hhhHHHHHHHhhhcCCCCCC---cchHHHHHHHHhc
Q 037178          147 GFPLDSRRVFDSLKTRNL--FQWNALVSG-FTKN--EL------YTDVLSIFVELSSDTELKPD---NFTFPCVIKACGG  212 (311)
Q Consensus       147 g~~~~A~~l~~~m~~~~~--~~y~~li~~-~~~~--g~------~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~~~~  212 (311)
                      |+..+-.+.+.+..+.++  ..|..++.+ +...  |.      ...|..++++..+   +.|+   ...|..+...|.+
T Consensus       135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHh
Confidence            333444555555554433  345555543 2322  32      3355555666555   5565   4567777777777


Q ss_pred             -----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCC
Q 037178          213 -----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPE  263 (311)
Q Consensus       213 -----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~  263 (311)
                           -|+.++|.+.|++..+.+-.-+..++..+.+.+++. |+.+++.+.+++...
T Consensus       212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~  268 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA  268 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence                 378888888888887765322467777777777774 888888888887764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.78  E-value=0.44  Score=35.03  Aligned_cols=77  Identities=8%  Similarity=-0.142  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC---ChhHHHHHHHhcCCCC-----hHHHHHHHHHHHhCCChhhHHH
Q 037178          114 EIGKRVHELVSASTQFSNDFIINTRLITMYSLCG---FPLDSRRVFDSLKTRN-----LFQWNALVSGFTKNELYTDVLS  185 (311)
Q Consensus       114 ~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~~-----~~~y~~li~~~~~~g~~~~a~~  185 (311)
                      ..+++-|.... +.|. ++..+.-.+--++++.+   +.+++..+|++..+.+     ...+-.+.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            33444444443 3332 33333333555555554   3445555555443211     2223334444455556666666


Q ss_pred             HHHHhhh
Q 037178          186 IFVELSS  192 (311)
Q Consensus       186 ~~~~m~~  192 (311)
                      .++...+
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.77  E-value=0.0052  Score=54.09  Aligned_cols=144  Identities=5%  Similarity=-0.033  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178          133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG  212 (311)
Q Consensus       133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~  212 (311)
                      ..+|..|..+..+.|++.+|.+.|=+  ..|...|..+|.+..+.|++++-+..+...++ ..  -+...=+.|+-+|++
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~--ke~~IDteLi~ayAk  128 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAK  128 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TC--CSTTTTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hh--cccccHHHHHHHHHh
Confidence            34667788888888888877766533  34555688888888888888888888766655 33  344455678888888


Q ss_pred             cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CChhh
Q 037178          213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE------------------------RNLVS  268 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------~~~~~  268 (311)
                      .+++.+.++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.|
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            888887776653       45666667777888888888888888776652                        46789


Q ss_pred             HHHHHHHHHhCCCcchHHHH
Q 037178          269 WNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       269 y~~li~~~~~~g~~~~a~~l  288 (311)
                      |-.+-.+|...+++.-|.-.
T Consensus       202 WKeV~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHH
T ss_pred             HHHHHHHHhCchHHHHHHHh
Confidence            99999999999887766544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=92.42  E-value=2.8  Score=31.84  Aligned_cols=110  Identities=15%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178          132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG  211 (311)
Q Consensus       132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~  211 (311)
                      +..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|..+....+ .++..    .++...-...+.++.
T Consensus        58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~----d~~~~vr~~a~~aL~  132 (201)
T 3ltj_A           58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL-IKALK----DEDWFVRIAAAFALG  132 (201)
T ss_dssp             SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT----CSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc----CCCHHHHHHHHHHHH
Confidence            4444444455555555544444444445555555555555555555554333222 22222    234444455555555


Q ss_pred             ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      +.|+.+ +...+..+.+   .++..+-...+.++.+.|.
T Consensus       133 ~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A          133 EIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG  167 (201)
T ss_dssp             HHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred             HhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence            555432 2222222222   2344555555555555554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.40  E-value=1.9  Score=42.89  Aligned_cols=145  Identities=8%  Similarity=-0.036  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-----------------
Q 037178          138 RLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-----------------  200 (311)
Q Consensus       138 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----------------  200 (311)
                      .++..+.+.|..+.|.++.....+ +...--.+..+|...|++++|.+.|++.-  .|+..+.                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhccccccccccc
Confidence            456667777888877776655544 44444556778888999999999998763  2222110                 


Q ss_pred             ------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Chhh
Q 037178          201 ------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD----VFVSNALIAMYGKCAFVEEMVKLFEVMPER--NLVS  268 (311)
Q Consensus       201 ------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~  268 (311)
                            .-|..++.-+.+.|.++.+.++-....+..-+-+    ...|..+.+.+...|++++|...+-.+...  -...
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence                  1267788888888888888888777665532222    236888899999999999998888776532  2345


Q ss_pred             HHHHHHHHHhCCCcchH
Q 037178          269 WNSIICGFSENGFSCES  285 (311)
Q Consensus       269 y~~li~~~~~~g~~~~a  285 (311)
                      ...||...|..|+.+.-
T Consensus       974 Lr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhCCChhhh
Confidence            66777777777765543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.80  E-value=2.2  Score=31.20  Aligned_cols=62  Identities=11%  Similarity=-0.047  Sum_probs=38.8

Q ss_pred             CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      ++.++|.++|+.+.. .+-+. ...|....+--.+.|+++.|.+++......+.+|. ......|
T Consensus        74 ~D~d~aR~vy~~a~~-~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~  135 (161)
T 4h7y_A           74 QEPDDARDYFQMARA-NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL  135 (161)
T ss_dssp             HCGGGCHHHHHHHHH-HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred             cCHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence            577777777777765 32222 34444444445678888888888888888775543 3333333

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=91.77  E-value=1.9  Score=28.91  Aligned_cols=77  Identities=14%  Similarity=-0.041  Sum_probs=57.7

Q ss_pred             CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                      ...++|..+-+.+. ..+.  ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-..  +.|..+++..-+.++
T Consensus        20 H~HqEA~tIAdwL~-~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l   94 (115)
T 2uwj_G           20 HCHEEALCIAEWLE-RLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL   94 (115)
T ss_dssp             TCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            35678888888877 5553  444444456667788999999999999999999998888664  778888888777777


Q ss_pred             hh
Q 037178          191 SS  192 (311)
Q Consensus       191 ~~  192 (311)
                      ..
T Consensus        95 a~   96 (115)
T 2uwj_G           95 GG   96 (115)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=91.72  E-value=2.1  Score=28.82  Aligned_cols=77  Identities=14%  Similarity=0.014  Sum_probs=57.0

Q ss_pred             CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178          111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL  190 (311)
Q Consensus       111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m  190 (311)
                      ...++|..+-+.+. ..+.  ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-..  +.|..+++..-+.++
T Consensus        21 H~HqEA~tIAdwL~-~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l   95 (116)
T 2p58_C           21 HYHEEANCIAEWLH-LKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL   95 (116)
T ss_dssp             TCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            35678888888877 5553  444444455667788999999999999999999998888765  667777777777677


Q ss_pred             hh
Q 037178          191 SS  192 (311)
Q Consensus       191 ~~  192 (311)
                      ..
T Consensus        96 a~   97 (116)
T 2p58_C           96 AR   97 (116)
T ss_dssp             TT
T ss_pred             Hh
Confidence            65

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.54  E-value=1.2  Score=36.67  Aligned_cols=92  Identities=9%  Similarity=-0.118  Sum_probs=70.3

Q ss_pred             hhHHHHHHHhcC--CC---ChHHHHHHHHHHHh-----CCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhcc-CC
Q 037178          149 PLDSRRVFDSLK--TR---NLFQWNALVSGFTK-----NELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGI-AD  215 (311)
Q Consensus       149 ~~~A~~l~~~m~--~~---~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~-g~  215 (311)
                      ...|...+++..  .|   +...|+.+...|.+     -|+.++|.+.|++..+   +.|+  ..++....+.++.. |+
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCC
Confidence            345666666554  34   35689999999999     4999999999999987   6674  66777888888885 99


Q ss_pred             hhhHHHHHHHHHHhCCC--CcHHHHHHHHH
Q 037178          216 VGFGSGVHGMAAKMGLI--GDVFVSNALIA  243 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~--~~~~~~~~li~  243 (311)
                      .+++.+.+++..+....  |+....|.+-+
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~q  285 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPHNKLLVILSQ  285 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence            99999999999987765  66665555443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=91.45  E-value=2.2  Score=28.66  Aligned_cols=75  Identities=8%  Similarity=-0.049  Sum_probs=57.3

Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...++|..+-+.+...|-  ...+--+-+..++..|++++|..+.+...-||...|-+|-.+  +.|-.+++...+.++
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l   95 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL   95 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            367888888888877764  444444555678899999999999999999999999777543  567677777777676

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=91.36  E-value=3.9  Score=31.30  Aligned_cols=142  Identities=14%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGF  174 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~  174 (311)
                      +|...-...+..+++.|..+....+.+.+.     .+|..+-...+.++.+.|..+....+.+.+..+|...-...+.++
T Consensus        31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL  105 (211)
T 3ltm_A           31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL  105 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            444444445555555554333333333222     245555555666666666655555555555566666666666666


Q ss_pred             HhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178          175 TKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF  250 (311)
Q Consensus       175 ~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  250 (311)
                      .+.|..+.. ..+.++..    .++...-...+.++.+.|+.+ +...+..+.+   .++..+-...+.++.+.|.
T Consensus       106 ~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~  172 (211)
T 3ltm_A          106 GQIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG  172 (211)
T ss_dssp             HHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred             HHhCcHHHH-HHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence            666654333 33333332    255555556666666666543 3333333332   3455556666666666665

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=91.11  E-value=2.2  Score=28.66  Aligned_cols=75  Identities=12%  Similarity=0.021  Sum_probs=58.3

Q ss_pred             CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ...++|..+-+.+...+-  ...+--+-+..++..|++++|..+.+...-||...|-+|-.  .+.|-.+++...+.++
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l   94 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL   94 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence            367888888888877764  44444455567889999999999999999999999977644  4677777787777677

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=90.46  E-value=4.8  Score=30.77  Aligned_cols=173  Identities=10%  Similarity=0.009  Sum_probs=109.0

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .++...-...+.++.+.| ..+..-.+.+.+.  .+|...-...+.+++..++.+....+.+.+.     .++..+-...
T Consensus        30 ~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-----~~~~~vr~~a  101 (211)
T 3ltm_A           30 DDSYYVRRAAAYALGKIG-DERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSA  101 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence            344444455666777777 5333333333333  3566666777777777776544444444333     4667777778


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      +.++.+.|..+....+.+.+..++...-...+.++.+.|..+ +...+.++..    .++..+-...+.++.+.+. .++
T Consensus       102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~  175 (211)
T 3ltm_A          102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERV  175 (211)
T ss_dssp             HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhH
Confidence            889999998766666777777788877778888888887754 4444555543    3667777788888888876 455


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCA  249 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  249 (311)
                      ...+..+.+.+   +..+-...+.++.+.+
T Consensus       176 ~~~L~~~l~d~---~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          176 RAAMEKLAETG---TGFARKVAVNYLETHK  202 (211)
T ss_dssp             HHHHHHHHHHC---CHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHhcC
Confidence            55666665543   4555555555555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.02  E-value=0.96  Score=38.98  Aligned_cols=67  Identities=6%  Similarity=-0.103  Sum_probs=40.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCCCchhhHH
Q 037178           69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSA----STQFSNDFIIN  136 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~  136 (311)
                      ++.++...| ++++|+..+..... .+-+...|..+|.++.+.|+..+|.+.|+....    +.|+.|+..+-
T Consensus       177 ~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          177 KAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444455566 66666666666655 555556666666666666666666666665431    34666665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.90  E-value=0.92  Score=42.64  Aligned_cols=48  Identities=10%  Similarity=-0.011  Sum_probs=26.8

Q ss_pred             HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          245 YGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +...|+++-|+++-++..+  | +..+|-.|..+|...|+++.|+-.++-+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445566666666555543  3 3455666666666666666666555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.83  E-value=3.4  Score=30.25  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             CChHHHHHHHHHHHhCCCh------hhHHHHHHHhhhcCCCCCCcc-hHHHHHH------HHhccCChhhHHHHHHHHHH
Q 037178          162 RNLFQWNALVSGFTKNELY------TDVLSIFVELSSDTELKPDNF-TFPCVIK------ACGGIADVGFGSGVHGMAAK  228 (311)
Q Consensus       162 ~~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~p~~~-t~~~li~------~~~~~g~~~~a~~~~~~m~~  228 (311)
                      .|-.+|-..+.-.-+.|+.      ++..++|++...  .++|+.. .+..-|.      .+...+++++|.++|+.+++
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3556666666666666777      777788887653  4555431 1111111      11344899999999999987


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      .+-.. ..+|-...+--.+.|++..|.+++....
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai  121 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV  121 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence            74444 8888888888899999999999998654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.77  E-value=2.6  Score=28.42  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=34.9

Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      -+..+-++.+.. ..+.|+.....+.++||.+.+++..|.++++-++.+- .....+|..+++
T Consensus        27 ~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           27 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            344444555555 5566666666666666666666666666666555442 233445555554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.53  E-value=2.1  Score=28.88  Aligned_cols=66  Identities=11%  Similarity=0.020  Sum_probs=52.8

Q ss_pred             HHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037178          209 ACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIIC  274 (311)
Q Consensus       209 ~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~  274 (311)
                      .+.+.. |..+..+-++.+....+.|+..+..+.+.+|.|.+++.-|.++|+..+.   ....+|.-++.
T Consensus        18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            344444 6667888888888889999999999999999999999999999998773   33445766653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.52  E-value=5.5  Score=29.56  Aligned_cols=62  Identities=8%  Similarity=-0.003  Sum_probs=42.7

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCCh-------hhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH---NADLK-------EATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      +...+-.-++.+...| .++.|.-+.+.+..   ..++.       .++..+..++...|.+.+|...|++..
T Consensus        19 ~~~~l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             --CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3445556677788888 88888888777665   33442       245666677778888888888888865

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=87.72  E-value=7.4  Score=29.36  Aligned_cols=172  Identities=10%  Similarity=0.008  Sum_probs=107.9

Q ss_pred             CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178           60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL  139 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  139 (311)
                      .+|...-...+.++.+.+ ..+....+.+.+.  .++...-...+.+++..++.+....+.+.+.     .++..+-...
T Consensus        25 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-----d~~~~vr~~a   96 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIG-DERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSA   96 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence            444444555666666666 5433333443333  3566666667777777776554444444333     4677777778


Q ss_pred             HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a  219 (311)
                      +.++.+.|..+....+.+.+..++...-...+.++.+.|..+ +...+.++..    .++...-...+.++.+.|.. ++
T Consensus        97 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~-~~  170 (201)
T 3ltj_A           97 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGGE-RV  170 (201)
T ss_dssp             HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred             HHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCch-hH
Confidence            888999888776677777777788777777788888877654 4445555543    25677777888888888764 45


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178          220 SGVHGMAAKMGLIGDVFVSNALIAMYGKC  248 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~  248 (311)
                      ...+..+.+.+   +..+-...+.++.+.
T Consensus       171 ~~~L~~~l~d~---~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          171 RAAMEKLAETG---TGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHHHHHC---CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence            55555555543   445555555555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.32  E-value=12  Score=31.33  Aligned_cols=147  Identities=8%  Similarity=-0.070  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHH----HHhhhcCCCCCCcchHHHHHHH
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIF----VELSSDTELKPDNFTFPCVIKA  209 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~t~~~li~~  209 (311)
                      ..|.++..-|.+.+++++|.+++..-           ...+.+.|+...|.++-    +-..+ .++++|.....-++..
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L  103 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGC  103 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Confidence            35667778889999999999986442           23345556666655553    33344 6777777777777776


Q ss_pred             HhccCChhhH-HHHHH----HHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH-------------
Q 037178          210 CGGIADVGFG-SGVHG----MAAKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW-------------  269 (311)
Q Consensus       210 ~~~~g~~~~a-~~~~~----~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y-------------  269 (311)
                      +.....-+-. .++.+    +-.+.|  -.-|......+...|.+.|++.+|+..|---.++.+..|             
T Consensus       104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~  183 (336)
T 3lpz_A          104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES  183 (336)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence            6555432211 22222    223333  234778888899999999999999988843222221222             


Q ss_pred             -------HHHHHHHHhCCCcchHHHHHHhh
Q 037178          270 -------NSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       270 -------~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                             ...+--|+-.++...|..+++..
T Consensus       184 ~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f  213 (336)
T 3lpz_A          184 HTAPLYCARAVLPYLLVANVRAANTAYRIF  213 (336)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                   22334455567777787877666

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.73  E-value=2.1  Score=36.78  Aligned_cols=55  Identities=7%  Similarity=-0.167  Sum_probs=27.8

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178          206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  261 (311)
                      ++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++.
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344445555555555555544443 344555555555555555555555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.66  E-value=13  Score=30.89  Aligned_cols=167  Identities=10%  Similarity=0.042  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHhhcC-CCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH----H
Q 037178          113 IEIGKRVHELVSASTQ-FSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI----F  187 (311)
Q Consensus       113 ~~~a~~~~~~m~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~----~  187 (311)
                      +++...-++.-. +.| +---...|.++..-|.+.+++++|.+++..-           ...+.+.|+...|.++    .
T Consensus        13 ~~r~l~rl~~~I-~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv   80 (312)
T 2wpv_A           13 LAKTLQRFENKI-KAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL   80 (312)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence            444444444444 333 2122346777888889999999999886542           2334556776666654    3


Q ss_pred             HHhhhcCCCCCCcchHHHHHHHHhccCChh-hHHHHHHHH----HHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178          188 VELSSDTELKPDNFTFPCVIKACGGIADVG-FGSGVHGMA----AKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEV  260 (311)
Q Consensus       188 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-~a~~~~~~m----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  260 (311)
                      +-..+ .+++++......++..+.....-+ .=.++++++    .+.|  -..|......+...|.+.|++.+|+..|--
T Consensus        81 ev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~  159 (312)
T 2wpv_A           81 EVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML  159 (312)
T ss_dssp             HHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence            33444 677777777777776665533211 112333333    3333  224778899999999999999999997752


Q ss_pred             CCCCCh----------------------hh-HHHHHHHHHhCCCcchHHHHHHhh
Q 037178          261 MPERNL----------------------VS-WNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       261 m~~~~~----------------------~~-y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      -...|.                      .. ....+--|+-.|+...|.++++..
T Consensus       160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f  214 (312)
T 2wpv_A          160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF  214 (312)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            221011                      11 122344566677888888888876

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=85.76  E-value=5.3  Score=28.52  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=40.8

Q ss_pred             hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      -+..+-++.+.. ..+.|+.......+++|.+.+|+..|.++++-++.+- .+...+|..+++
T Consensus        70 wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           70 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            344455555555 6677777777788888888888888887777665542 444556766665

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.64  E-value=30  Score=34.34  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-c--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPD-N--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      |..++..|-+.|.++.+.++-+...+..+-..+ .  ..|..+.+++...|++++|...+-.+-....+  ......||.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            567777888888888888776554331222221 1  24778888888999999998888777655433  455666777


Q ss_pred             HHHhcCCHHHH
Q 037178          244 MYGKCAFVEEM  254 (311)
Q Consensus       244 ~~~~~g~~~~A  254 (311)
                      ..|..|.++.-
T Consensus       980 ~lce~~~~~~L  990 (1139)
T 4fhn_B          980 QLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHCCHHHH
T ss_pred             HHHhCCChhhh
Confidence            77766665443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.17  E-value=10  Score=32.57  Aligned_cols=161  Identities=8%  Similarity=-0.055  Sum_probs=102.3

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC---hhhHHHHHHhcccCC-ChhHHHHHHHHHHh---hc-CCCchh
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL---KEATGVLLQACGHEK-DIEIGKRVHELVSA---ST-QFSNDF  133 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~---~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~---~~-g~~~~~  133 (311)
                      +...|...|.+.| +.++..+++...+.   .-+-   ......++..+.... ..+.-.++..+..+   .. ..-...
T Consensus        21 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEG-KAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHT-CHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999 99999999998887   2222   233567777776643 33444444444331   11 111122


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHhcCC----CC-----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCCCcchH
Q 037178          134 IINTRLITMYSLCGFPLDSRRVFDSLKT----RN-----LFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKPDNFTF  203 (311)
Q Consensus       134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~t~  203 (311)
                      .+-..|...|...|++.+|.+++.++.+    -|     +..|-.-+..|...|++.++...+....... .+.++....
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            2334689999999999999888887752    11     2457777888999999999999998875411 222333322


Q ss_pred             HHHHHH-----Hh-ccCChhhHHHHHHHHH
Q 037178          204 PCVIKA-----CG-GIADVGFGSGVHGMAA  227 (311)
Q Consensus       204 ~~li~~-----~~-~~g~~~~a~~~~~~m~  227 (311)
                       ..++.     +. ..+++.+|...|-+..
T Consensus       180 -a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          180 -GALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             -HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             -HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence             22222     24 6788888887776653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.70  E-value=20  Score=31.38  Aligned_cols=179  Identities=6%  Similarity=-0.036  Sum_probs=113.5

Q ss_pred             CChhHHHHHHHHHHhh----cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHH----HHHHHhCCC
Q 037178          111 KDIEIGKRVHELVSAS----TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNAL----VSGFTKNEL  179 (311)
Q Consensus       111 ~~~~~a~~~~~~m~~~----~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~l----i~~~~~~g~  179 (311)
                      |+++.|.+.+-.+..+    .+..........++..|.+.|+++...+.+..+.+.   --..-..+    +........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            5677777766655521    234455677888999999999999987766655432   11122233    333222333


Q ss_pred             hhh--HHHHHHHhhhcCCCCCCc--------chHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCc---HHHHHHHHHH
Q 037178          180 YTD--VLSIFVELSSDTELKPDN--------FTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGD---VFVSNALIAM  244 (311)
Q Consensus       180 ~~~--a~~~~~~m~~~~~~~p~~--------~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~  244 (311)
                      .+.  -..+.+...   .+.-+.        .....|...+...|++.+|.+++..+...  |....   ...+...+..
T Consensus       110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            222  222222221   121111        12356778889999999999999998644  22111   4677888899


Q ss_pred             HHhcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          245 YGKCAFVEEMVKLFEVMPE------RN----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       245 ~~~~g~~~~A~~~~~~m~~------~~----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      |...+++..|..++++...      ++    ...|..++..+...+++.+|.+.|.+.
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999888641      11    235677777788888888888877776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=84.69  E-value=2.7  Score=29.66  Aligned_cols=64  Identities=9%  Similarity=-0.255  Sum_probs=28.0

Q ss_pred             CCcchHHHHHHHHhccCChhh---HHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          198 PDNFTFPCVIKACGGIADVGF---GSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       198 p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      ++..+-..+.-++.+.....+   +..++..+.+.+ .|  .....-.|.-++.|.|++++|.+.++.+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL  101 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333443344444444443333   445555544443 12  22222233344555555555555555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.45  E-value=11  Score=28.06  Aligned_cols=124  Identities=10%  Similarity=0.063  Sum_probs=63.6

Q ss_pred             cCCCchhhHH--HHHHHHHHhcCChhHHHHHHHhcC-----CCCh-------HHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          127 TQFSNDFIIN--TRLITMYSLCGFPLDSRRVFDSLK-----TRNL-------FQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       127 ~g~~~~~~~~--~~ll~~~~~~g~~~~A~~l~~~m~-----~~~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      .|+.|....|  -.-+..+...|.++.|+-+.+.+.     ++++       .++..+.+++...|++..|...|++..+
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            4555544333  334566677788888877766643     2332       2456677788888888888888888533


Q ss_pred             cCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          193 DTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       193 ~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      ....-+... ++..+ .   .......         ......+..+---+-.+|.+.|+.++|..+++.+..
T Consensus        92 ~~k~l~k~~s~~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           92 QKKALSKTSKVRPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHhcCCCccccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            122222111 11111 0   0000000         011233445555577888899999999999988763

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.14  E-value=28  Score=32.74  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHhcCC--CChHH-H-HHHHHHHHhCCC-hhhHHHHHHHhhhc-----CCCCCCcc----
Q 037178          137 TRLITMYSLCGF-PLDSRRVFDSLKT--RNLFQ-W-NALVSGFTKNEL-YTDVLSIFVELSSD-----TELKPDNF----  201 (311)
Q Consensus       137 ~~ll~~~~~~g~-~~~A~~l~~~m~~--~~~~~-y-~~li~~~~~~g~-~~~a~~~~~~m~~~-----~~~~p~~~----  201 (311)
                      ..|+..+...|+ .+.|..+|+++.+  |.... | ..+|..+.+.++ --+|.+++.+..+.     ....+...    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            445555555566 4779999988764  32222 2 233333333332 23455555443210     11222211    


Q ss_pred             --hH-HHH----HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          202 --TF-PCV----IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       202 --t~-~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                        .+ ..|    .+-|...|+++.|.++-++....- +.+-.+|-.|..+|.+.|+++.|+-.++.++
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence              01 112    234567899999999999887764 5568999999999999999999999999886

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=84.07  E-value=9.3  Score=29.50  Aligned_cols=19  Identities=5%  Similarity=-0.192  Sum_probs=10.1

Q ss_pred             HHHHhcCCHHHHHHHHhhC
Q 037178          243 AMYGKCAFVEEMVKLFEVM  261 (311)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~m  261 (311)
                      ..-++.|+.+-+..+++.-
T Consensus       155 ~~A~~~~~~~~v~~Ll~~g  173 (241)
T 1k1a_A          155 IHAVENNSLSMVQLLLQHG  173 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcC
Confidence            3334556666555555543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.04  E-value=5  Score=28.68  Aligned_cols=65  Identities=11%  Similarity=0.031  Sum_probs=51.8

Q ss_pred             HhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037178          210 CGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIIC  274 (311)
Q Consensus       210 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~  274 (311)
                      +.+.. |..+..+-++.+....+.|+..+..+.+.++-+.+++.-|.++|+..+.   ....+|.-++.
T Consensus        62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            34444 5667788888888889999999999999999999999999999998773   34445766653

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=81.62  E-value=11  Score=26.51  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCC
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKP  198 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p  198 (311)
                      ..+.++.-|...|+.++|.+.++++..|   ..+.+..+..++-+.+.  .+.+..++..+.. .|+-+
T Consensus         9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~-~~~is   76 (129)
T 2nsz_A            9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTIT   76 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcC
Confidence            3456888888889999999999998866   33456666667666542  4667788888876 55433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.10  E-value=13  Score=32.41  Aligned_cols=95  Identities=8%  Similarity=-0.147  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCC------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHH--
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKT------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV--  206 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~l--  206 (311)
                      +...+...|.+.|++++|.+.|.++..      .-+..|-.+|..+...+++..+...+.+......-.++...-+.+  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            566788999999999999999998863      234567788888889999999999988875411112222211111  


Q ss_pred             --HHHHhccCChhhHHHHHHHHHHh
Q 037178          207 --IKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       207 --i~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                        .-.+...+++.+|...|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence              11234567888888888776554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.31  E-value=27  Score=29.94  Aligned_cols=161  Identities=11%  Similarity=-0.015  Sum_probs=77.9

Q ss_pred             hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch---hhHHHHHHHHHHhcCC-hhHHHHHHHhcCC---CChHHH----
Q 037178           99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSND---FIINTRLITMYSLCGF-PLDSRRVFDSLKT---RNLFQW----  167 (311)
Q Consensus        99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~---~~~~~y----  167 (311)
                      ....+...|...|+.++..+++.....-.+.-+.   ......|++.+....+ .+.-.++..+..+   .+-.+|    
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666677777666666655411121221   2234456666655432 2222233222211   111222    


Q ss_pred             --HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-----chHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCcHHHH
Q 037178          168 --NALVSGFTKNELYTDVLSIFVELSSDTELKPDN-----FTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGDVFVS  238 (311)
Q Consensus       168 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~  238 (311)
                        .-++..|...|++.+|..++.++.+ .--..|.     ..|..-++.|...|++.++...+......  .+.++..+.
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~-~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLR-ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence              2466677777777777777766654 2112221     23445555566667777777776655432  222222222


Q ss_pred             HHH----HHHHH-hcCCHHHHHHHHhh
Q 037178          239 NAL----IAMYG-KCAFVEEMVKLFEV  260 (311)
Q Consensus       239 ~~l----i~~~~-~~g~~~~A~~~~~~  260 (311)
                      ..+    .-.++ ..+++.+|...|-+
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e  206 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYE  206 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence            111    11234 56666666666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.54
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.69
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.63
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.46
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.35
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.23
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.2
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.13
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.12
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.04
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.92
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.54
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.28
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.73
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.7
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.57
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.89
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.07
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.18
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.33
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	88.56
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.47
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	83.81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-13  Score=113.74  Aligned_cols=221  Identities=12%  Similarity=0.039  Sum_probs=178.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC  146 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~  146 (311)
                      ..-..+.+.| ++++|+..|+++.+ .+-+..+|..+..++...|++++|...+++.. +.. +-+...+..+...|...
T Consensus        24 ~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL-ELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh-ccc-ccccccccccccccccc
Confidence            4556788999 99999999999999 55567889999999999999999999999998 554 34567888899999999


Q ss_pred             CChhHHHHHHHhcCC--CC----------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178          147 GFPLDSRRVFDSLKT--RN----------------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK  208 (311)
Q Consensus       147 g~~~~A~~l~~~m~~--~~----------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~  208 (311)
                      |++++|.+.+++...  |+                ...+...+..+...+.+.+|.+.|.+......-..+...+..+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            999999999988641  11                111222333445556788899998887652323345567788888


Q ss_pred             HHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchH
Q 037178          209 ACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCES  285 (311)
Q Consensus       209 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a  285 (311)
                      .+...|++++|...++...+.. +-+..+|..+...|.+.|++++|.+.|++..+  | +..+|..+..+|.+.|++++|
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999988875 45688999999999999999999999998874  4 567899999999999999999


Q ss_pred             HHHHHhh
Q 037178          286 FDLLIKM  292 (311)
Q Consensus       286 ~~l~~~m  292 (311)
                      .+.|++.
T Consensus       260 ~~~~~~a  266 (323)
T d1fcha_         260 VEHFLEA  266 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999988

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.5e-12  Score=108.18  Aligned_cols=231  Identities=11%  Similarity=0.014  Sum_probs=191.4

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      ....+..........+ ....+...+.+... .+.+...+..+...+...|+.++|...++... +.. +-+...+..+.
T Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~l~  210 (388)
T d1w3ba_         134 LYCVRSDLGNLLKALG-RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLD-PNFLDAYINLG  210 (388)
T ss_dssp             CTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             cccccccccccccccc-hhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHH-HhC-cccHHHHHHHh
Confidence            3344555566666777 88888888888777 55566778888888899999999999999988 543 34567888899


Q ss_pred             HHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~  216 (311)
                      ..+...|++++|...|++..   ..+...|..+...+.+.|++++|...|++..+   +.|+ ..++..+...+...|++
T Consensus       211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~  287 (388)
T d1w3ba_         211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCH
T ss_pred             hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence            99999999999999998765   34677888899999999999999999999876   4454 56788899999999999


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMM  293 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~  293 (311)
                      ++|.+.++...... +.+...+..+...|.+.|++++|.+.|++..+  | +..+|..+...|.+.|++++|.+.|++. 
T Consensus       288 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-  365 (388)
T d1w3ba_         288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA-  365 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH-
T ss_pred             HHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence            99999999888775 66788999999999999999999999999875  4 4568889999999999999999999998 


Q ss_pred             hccCCCCCCc
Q 037178          294 GCEEGFIPDV  303 (311)
Q Consensus       294 ~~~~g~~P~~  303 (311)
                       .+  +.|+.
T Consensus       366 -l~--l~P~~  372 (388)
T d1w3ba_         366 -IR--ISPTF  372 (388)
T ss_dssp             -HT--TCTTC
T ss_pred             -HH--hCCCC
Confidence             43  46653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.6e-13  Score=111.78  Aligned_cols=214  Identities=6%  Similarity=-0.038  Sum_probs=181.8

Q ss_pred             CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +...+..+...+...| ++++|...+++... .+-+...|..+...+...|++++|...++... ..+ +.+...+..+.
T Consensus       168 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~  244 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PNHAVVHGNLA  244 (388)
T ss_dssp             CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred             hhHHHHhhcccccccC-cHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH-HHh-hhHHHHHHHHH
Confidence            4456777888888999 99999999999888 55567789999999999999999999999988 554 44566777799


Q ss_pred             HHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG  217 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  217 (311)
                      ..+.+.|++++|...|++..   ..+..+|..+...+...|++++|.+.++.... . .+.+...+..+...+.+.|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-L-CPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc-c-CCccchhhhHHHHHHHHCCCHH
Confidence            99999999999999998854   34678899999999999999999999998865 2 3345678888999999999999


Q ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCC
Q 037178          218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGF  281 (311)
Q Consensus       218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~  281 (311)
                      +|.+.+++..+.. +-+..++..+...|.+.|++++|.+.|++..+  | +..+|..+...|.+.|+
T Consensus       323 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999987654 44678899999999999999999999998875  4 45688889888887764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-10  Score=96.66  Aligned_cols=222  Identities=14%  Similarity=0.001  Sum_probs=171.9

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-ch------
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS-ND------  132 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~------  132 (311)
                      .+..+|..+..++...| ++++|...|++..+ .+-+...+..+...+...|++++|.+.++.+. ..... ..      
T Consensus        51 ~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~  128 (323)
T d1fcha_          51 KHMEAWQYLGTTQAENE-QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL-RYTPAYAHLVTPAE  128 (323)
T ss_dssp             TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTGGGCC---
T ss_pred             CCHHHHHHHHHHHHHcC-ChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHH-HhccchHHHHHhhh
Confidence            35678999999999999 99999999999998 55567888889999999999999999999987 43211 00      


Q ss_pred             -------hhHHHHHHHHHHhcCChhHHHHHHHhcC-----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-
Q 037178          133 -------FIINTRLITMYSLCGFPLDSRRVFDSLK-----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-  199 (311)
Q Consensus       133 -------~~~~~~ll~~~~~~g~~~~A~~l~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-  199 (311)
                             .......+..+.+.+.+.+|...|.+..     ..+...|..+...+...|++++|...|++...   ..|+ 
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~  205 (323)
T d1fcha_         129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPND  205 (323)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred             hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---ccccc
Confidence                   0111122333445567788888887654     23567888999999999999999999999876   3454 


Q ss_pred             cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C------------C
Q 037178          200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R------------N  265 (311)
Q Consensus       200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~------------~  265 (311)
                      ...|..+...+.+.|++++|.+.++...+.. +-+..+|..+..+|.+.|++++|.+.|++..+  |            .
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~  284 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS  284 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence            5678889999999999999999999998875 44678899999999999999999999998763  1            1


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHH
Q 037178          266 LVSWNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       266 ~~~y~~li~~~~~~g~~~~a~~l  288 (311)
                      ...|..+-.++...|+.+.+...
T Consensus       285 ~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         285 ENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHH
Confidence            13566676777777777665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.9e-09  Score=89.25  Aligned_cols=209  Identities=9%  Similarity=-0.045  Sum_probs=158.3

Q ss_pred             HHHHHHHHHhhcc-CCCChhhHHHHHHhccc--------------CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178           80 LNKALSLLQENLH-NADLKEATGVLLQACGH--------------EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS  144 (311)
Q Consensus        80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~  144 (311)
                      .+.+..+|+++.. .+-+...|...+..+-+              .+..+++..+|+... +...+.+...|..+...+.
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral-~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence            4567778888877 55666666655544322              234577888999888 5544556678888889999


Q ss_pred             hcCChhHHHHHHHhcCC--C-C-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH-HhccCChhh
Q 037178          145 LCGFPLDSRRVFDSLKT--R-N-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA-CGGIADVGF  218 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~--~-~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~-~~~~g~~~~  218 (311)
                      +.|+++.|..+|+++.+  | + ...|...+....+.|+.++|.++|++..+ .  .|+ ...|...... +...|+.+.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~-~--~~~~~~~~~~~a~~e~~~~~~~~~  187 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHhccCHHH
Confidence            99999999999998753  2 3 34789999999999999999999999876 3  232 3333333322 344578999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C--ChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178          219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----R--NLVSWNSIICGFSENGFSCESFDLLIK  291 (311)
Q Consensus       219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~--~~~~y~~li~~~~~~g~~~~a~~l~~~  291 (311)
                      |..+++.+.+.. +.+...|...++.+.+.|+++.|+.+|++..+     |  ....|...+.--...|+.+.+.+++++
T Consensus       188 a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999998873 55788999999999999999999999998643     1  235799999988899999999999998


Q ss_pred             hh
Q 037178          292 MM  293 (311)
Q Consensus       292 m~  293 (311)
                      +.
T Consensus       267 ~~  268 (308)
T d2onda1         267 RF  268 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            83

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.3e-09  Score=86.86  Aligned_cols=216  Identities=9%  Similarity=0.000  Sum_probs=162.1

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      .|+.+-..+.+.+ .+++|+.+++++.+ .+-+...|+....++...| ++++|...++... +.. +-+..+|+.+...
T Consensus        45 a~~~~~~~~~~~e-~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al-~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDE-RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTC-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHH-HhhhhHHHHHhHH
Confidence            4566666677778 99999999999999 5555667888887877766 5899999999998 554 4567889999999


Q ss_pred             HHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCC---
Q 037178          143 YSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIAD---  215 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~---  215 (311)
                      +.+.|++++|...|+++.   ..+...|+.+...+.+.|++++|++.|++..+   +.|+ ...|+.+...+.+.+.   
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccch
Confidence            999999999999999876   34789999999999999999999999999987   4564 4466665555555444   


Q ss_pred             ---hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhC--CCcchH
Q 037178          216 ---VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIICGFSEN--GFSCES  285 (311)
Q Consensus       216 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~~~~~~--g~~~~a  285 (311)
                         +++|.+.+....+.. +.+...|+.+...+... ..+++.+.++...+     .+...+..++..|...  ++.+.+
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence               567888888888775 55788888777665544 45666666665542     3445667777777543  443444


Q ss_pred             HHH
Q 037178          286 FDL  288 (311)
Q Consensus       286 ~~l  288 (311)
                      ...
T Consensus       277 ~~~  279 (315)
T d2h6fa1         277 EDI  279 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=9.5e-08  Score=78.73  Aligned_cols=182  Identities=7%  Similarity=-0.069  Sum_probs=143.0

Q ss_pred             CHHHHHHHHHhhcc-C-CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHH
Q 037178           79 SLNKALSLLQENLH-N-ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVF  156 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~  156 (311)
                      ..++|..+|++... . +.+...|...+....+.|+.+.|..+++.+. +........+|..++..+.+.|+.++|.++|
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l-~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            56889999999887 3 4445567778888889999999999999998 5443333457899999999999999999999


Q ss_pred             HhcCC--C-ChHHHHHHHHH-HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-C
Q 037178          157 DSLKT--R-NLFQWNALVSG-FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG-L  231 (311)
Q Consensus       157 ~~m~~--~-~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~  231 (311)
                      ++..+  | +...|...... +...|+.+.|..+|+.+.. . ..-+...+...++.+.+.|+++.|+.+|++..+.. .
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~-~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-K-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-H-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-h-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            98763  2 34444443333 3456899999999999986 3 22345678899999999999999999999987764 3


Q ss_pred             CCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          232 IGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       232 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .|+  ...|...+..-.+.|+.+.+.++++++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            443  46899999988899999999999988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.5e-08  Score=81.05  Aligned_cols=192  Identities=8%  Similarity=-0.083  Sum_probs=125.1

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      ..|..+-..|.+.| ++++|+..|++... .+-+..+|..+..++.+.|++++|...|+++. +.. +-+..++..+..+
T Consensus        38 ~~~~~~G~~y~~~g-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~  114 (259)
T d1xnfa_          38 QLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH-HHH-hhhhhhHHHHHHH
Confidence            45677778888999 99999999999988 66667888899999999999999999999988 554 3345677778888


Q ss_pred             HHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc----CC
Q 037178          143 YSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI----AD  215 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~----g~  215 (311)
                      |...|++++|...|+...+   .+......+..++.+.+..+.+..+......   ..++...++ ++..+...    +.
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~  190 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTL  190 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHH
Confidence            9999999999999987642   3444444444555565666666666555544   222222222 22222111    11


Q ss_pred             hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      .+.+...+....... +-...+|..+...|...|++++|.+.|++..+
T Consensus       191 ~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         191 MERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            112221111111110 11235667778888888888888888888765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.8e-08  Score=78.97  Aligned_cols=188  Identities=8%  Similarity=-0.031  Sum_probs=150.5

Q ss_pred             hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC-ChhHHHHHHHhcC---CCChHHHHHHHHH
Q 037178           98 EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG-FPLDSRRVFDSLK---TRNLFQWNALVSG  173 (311)
Q Consensus        98 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~---~~~~~~y~~li~~  173 (311)
                      ..|+-+-..+.+.+..++|..+++.+. +.. +-+...|+....++...| ++++|...++...   ..+..+|+.+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai-~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAI-ELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH-HHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            344444455667889999999999999 654 456678888888888876 4899999998865   3478899999999


Q ss_pred             HHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC--
Q 037178          174 FTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF--  250 (311)
Q Consensus       174 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--  250 (311)
                      +.+.|++++|+..++++.+   ..|+ ...|..+...+.+.|++++|.+.++.+.+.+ +-+...|+.+...+.+.|+  
T Consensus       122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence            9999999999999999976   4554 6789999999999999999999999999986 5577888888777777665  


Q ss_pred             ----HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          251 ----VEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       251 ----~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                          +++|.+.+.+..+  | |...|+-+...+ .....+++.+.++..
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~  245 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQL  245 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHH
Confidence                5788888887764  4 667787776554 444567888888777

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=9.5e-07  Score=70.14  Aligned_cols=213  Identities=8%  Similarity=-0.123  Sum_probs=142.6

Q ss_pred             CHHHHHHHHHhhcc-CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHH
Q 037178           79 SLNKALSLLQENLH-NADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSR  153 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~  153 (311)
                      +.+.++.-+++... ...+    ..+|..+...+.+.|++++|...|++.. +.. +-+..+|+.+..+|.+.|++++|.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al-~l~-p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR-PDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh-ccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence            45566666666665 2212    3467777788889999999999999998 654 456788999999999999999999


Q ss_pred             HHHHhcC--C-CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          154 RVFDSLK--T-RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       154 ~l~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +.|++..  . .+..+|..+..+|...|++++|...|++..+   ..|+ ......+..+..+.+..+....+.......
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            9999876  2 3667899999999999999999999999876   3343 333333444445555555555555554443


Q ss_pred             CCCCcHHHHHHHHHHHHhcCC----HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178          230 GLIGDVFVSNALIAMYGKCAF----VEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD  302 (311)
Q Consensus       230 g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~  302 (311)
                      .  ++...++ ++..+.....    .+.+...+.....  + ...+|..+...|...|++++|.+.|++.  ..  ..|+
T Consensus       169 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~--~~p~  241 (259)
T d1xnfa_         169 D--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA--VA--NNVH  241 (259)
T ss_dssp             C--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HT--TCCT
T ss_pred             c--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH--HH--cCCC
Confidence            2  2222222 2333322222    2222222222111  2 2346778899999999999999999998  53  4565


Q ss_pred             c
Q 037178          303 V  303 (311)
Q Consensus       303 ~  303 (311)
                      .
T Consensus       242 ~  242 (259)
T d1xnfa_         242 N  242 (259)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=8.3e-07  Score=73.20  Aligned_cols=117  Identities=9%  Similarity=-0.076  Sum_probs=52.2

Q ss_pred             HHhcCCCHHHHHHHHHhhccCCCC------hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC----CC-chhhHHHHHHH
Q 037178           73 LCEESKSLNKALSLLQENLHNADL------KEATGVLLQACGHEKDIEIGKRVHELVSASTQ----FS-NDFIINTRLIT  141 (311)
Q Consensus        73 ~~~~g~~~~~a~~~~~~m~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g----~~-~~~~~~~~ll~  141 (311)
                      +...| ++++|+.++++.....|+      ...+..+...+...|++++|...+++.. +..    .. .....+..+..
T Consensus        22 ~~~~g-~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          22 AINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCC-CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHH
Confidence            34455 555555555555441121      1233344445555555555555555544 211    00 11223334444


Q ss_pred             HHHhcCChhHHHHHHHhcC-------CC----ChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178          142 MYSLCGFPLDSRRVFDSLK-------TR----NLFQWNALVSGFTKNELYTDVLSIFVELS  191 (311)
Q Consensus       142 ~~~~~g~~~~A~~l~~~m~-------~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~  191 (311)
                      .+...|++..|...+....       .+    ....+..+...+...|+++.+...+....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            5555555555555444321       00    11233344445555555555555555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.2e-07  Score=75.09  Aligned_cols=228  Identities=9%  Similarity=-0.092  Sum_probs=164.6

Q ss_pred             ccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHh---hcCCC--c
Q 037178           64 LHFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSA---STQFS--N  131 (311)
Q Consensus        64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~--~  131 (311)
                      ..++.+-..+...| ++++|+..|++...   ..++    ...+..+...+...|++..+...+.....   ..+..  +
T Consensus        52 ~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~  130 (366)
T d1hz4a_          52 VATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  130 (366)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh
Confidence            45777888899999 99999999999876   2222    23455566677889999999988887652   11111  1


Q ss_pred             -hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCCC
Q 037178          132 -DFIINTRLITMYSLCGFPLDSRRVFDSLKT--------RNLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKPD  199 (311)
Q Consensus       132 -~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~  199 (311)
                       ....+..+...+...|+++.+...++....        .....+......+...|+..++...+.+....   .+..+.
T Consensus       131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  210 (366)
T d1hz4a_         131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  210 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence             234566677888999999999999877541        13356677777888889999998888765431   111111


Q ss_pred             --cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C-C
Q 037178          200 --NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI---GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------R-N  265 (311)
Q Consensus       200 --~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~-~  265 (311)
                        ...+..+...+...|+.++|...+....+....   .....+..+...|...|++++|...+++..+        + .
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL  290 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH
Confidence              234556667788889999999998876544322   2345666788899999999999999988752        2 2


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          266 LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       266 ~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..+|..+...|.+.|++++|.+.+++.
T Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         291 NRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            357788889999999999999999876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=6.3e-07  Score=72.98  Aligned_cols=201  Identities=9%  Similarity=-0.071  Sum_probs=122.3

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhh---cC-CCchh
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAS---TQ-FSNDF  133 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~g-~~~~~  133 (311)
                      .|......|-..+ ++++|.+.|.+...   -..+    ..+|..+..+|.+.|++++|...++...+-   .| .....
T Consensus        39 ~y~~aa~~y~~~~-~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          39 LCVQAATIYRLRK-ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            4777777788888 88888888888766   1111    346777788888888888888888866521   11 11123


Q ss_pred             hHHHHHHHHHHh-cCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc--
Q 037178          134 IINTRLITMYSL-CGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF--  201 (311)
Q Consensus       134 ~~~~~ll~~~~~-~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--  201 (311)
                      .++..+...|-. .|++++|.+.|++..+     .    -..+|..+...+.+.|++++|...|++... ........  
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~-~~~~~~~~~~  196 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK-SSMGNRLSQW  196 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTSSCTTTGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH-hCccchhhhh
Confidence            445555656643 5888888887776431     1    124577778888888888888888887655 22111111  


Q ss_pred             ----hHHHHHHHHhccCChhhHHHHHHHHHHhCCC-C---cHHHHHHHHHHHHh--cCCHHHHHHHHhhCCCCChh
Q 037178          202 ----TFPCVIKACGGIADVGFGSGVHGMAAKMGLI-G---DVFVSNALIAMYGK--CAFVEEMVKLFEVMPERNLV  267 (311)
Q Consensus       202 ----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~  267 (311)
                          .+...+..+...|+++.|...++...+.... +   .......++.+|-.  .+++++|.+.|+++.+-|..
T Consensus       197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence                1233344455667788887777766543211 1   12344556666554  24577777777777766643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=5.8e-08  Score=80.91  Aligned_cols=205  Identities=9%  Similarity=-0.062  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccC--CChhHHHHHHHHHHhhcCCCchhhHHH-HHHHHHHhcCChhHHHH
Q 037178           79 SLNKALSLLQENLH-NADLKEATGVLLQACGHE--KDIEIGKRVHELVSASTQFSNDFIINT-RLITMYSLCGFPLDSRR  154 (311)
Q Consensus        79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~g~~~~~~~~~-~ll~~~~~~g~~~~A~~  154 (311)
                      .+++|+.+++...+ .+.+...|..+..++...  ++.+++...+..+. +.. +.+...+. .+...+...|..++|..
T Consensus        88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al-~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH-hhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence            57899999999888 555666776666555554  45789999999988 554 33444443 44567778899999999


Q ss_pred             HHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178          155 VFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL  231 (311)
Q Consensus       155 l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  231 (311)
                      .++...+   .+..+|+.+...+.+.|++++|...+.+...   +.|+   ...+...+...+..+++...+....... 
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence            9998874   3778899999999999999888766655443   1222   2233444566777888888887776654 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          232 IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      +++...+..+...+...|+.++|...+.+..+.+.   .+|..+...|.+.|+.++|.+.+++.
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45566677777888888899999999988887554   56777888888999999999999988

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.6e-06  Score=63.97  Aligned_cols=121  Identities=8%  Similarity=-0.137  Sum_probs=94.3

Q ss_pred             HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh
Q 037178          140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF  218 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~  218 (311)
                      ...+...|++++|.+.|+++.+++...|..+..+|...|++++|.+.|++..+   +.|+ ...|..+-.++.+.|++++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhccHHH
Confidence            44567778888888888888888888888888888888888888888888876   4454 4577788888888888888


Q ss_pred             HHHHHHHHHHhC------------CC--C-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178          219 GSGVHGMAAKMG------------LI--G-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       219 a~~~~~~m~~~g------------~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      |.+.|+......            ..  . ...++..+..+|.+.|++++|.+.++...+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            888888776431            11  1 135667788889999999999999987764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.7e-06  Score=68.23  Aligned_cols=200  Identities=7%  Similarity=-0.112  Sum_probs=141.6

Q ss_pred             CHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCc-hhhHHHHHHHHHHhcCChhHHH
Q 037178           79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAST----QFSN-DFIINTRLITMYSLCGFPLDSR  153 (311)
Q Consensus        79 ~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~  153 (311)
                      ++++|.++|.+             ....|...|++++|...|.++. +.    +-.+ -..+|+.+..+|.+.|++++|.
T Consensus        32 ~~~~Aa~~y~~-------------aa~~y~~~~~~~~A~~~y~kA~-~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          32 KFEEAADLCVQ-------------AATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHH-------------HHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHH-------------HHHHHHHCcCHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            45666666554             4556778899999999999887 32    2122 2457888999999999999999


Q ss_pred             HHHHhcCC-----C----ChHHHHHHHHHHHh-CCChhhHHHHHHHhhhc---CCCCCC-cchHHHHHHHHhccCChhhH
Q 037178          154 RVFDSLKT-----R----NLFQWNALVSGFTK-NELYTDVLSIFVELSSD---TELKPD-NFTFPCVIKACGGIADVGFG  219 (311)
Q Consensus       154 ~l~~~m~~-----~----~~~~y~~li~~~~~-~g~~~~a~~~~~~m~~~---~~~~p~-~~t~~~li~~~~~~g~~~~a  219 (311)
                      +.+++..+     .    ....+..+...|.. .|++++|.+.|++..+-   .+..+. ..++..+...+...|++++|
T Consensus        98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_          98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            99887542     1    23557777777754 69999999999886430   222221 34678889999999999999


Q ss_pred             HHHHHHHHHhCCCCc------HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhC--CCcc
Q 037178          220 SGVHGMAAKMGLIGD------VFVSNALIAMYGKCAFVEEMVKLFEVMPERNL--------VSWNSIICGFSEN--GFSC  283 (311)
Q Consensus       220 ~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~y~~li~~~~~~--g~~~  283 (311)
                      ...+++.........      ...+...+..+...|+++.|.+.+++..+-+.        .....++.++-..  ++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~  257 (290)
T d1qqea_         178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (290)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999877532221      12334555567788999999999999986332        2446677776653  4578


Q ss_pred             hHHHHHHhh
Q 037178          284 ESFDLLIKM  292 (311)
Q Consensus       284 ~a~~l~~~m  292 (311)
                      +|+.-|+++
T Consensus       258 eai~~y~~~  266 (290)
T d1qqea_         258 EHCKEFDNF  266 (290)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHHH
Confidence            888888777

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8.9e-06  Score=61.69  Aligned_cols=121  Identities=6%  Similarity=-0.098  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      |+- -..+...| ++++|++.|+++..  |+..+|.-+..++...|++++|.+.|++.. +.. +-+...|..+..+|.+
T Consensus         9 ~~~-g~~~~~~~-d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl-~ld-p~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           9 WNE-GVLAADKK-DWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRD-KHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHH-HHHHHHTT-CHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHCC-CHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHH-HHh-hhhhhhHHHHHHHHHh
Confidence            444 44566778 89999999887644  677788888888899999999999999988 655 4456778888888999


Q ss_pred             cCChhHHHHHHHhcC---CC----------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          146 CGFPLDSRRVFDSLK---TR----------------NLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       146 ~g~~~~A~~l~~~m~---~~----------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      .|++++|.+-|++..   +.                ...++..+..++.+.|++++|.+.|.....
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999988887642   11                123455666777788888888888777655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=5.7e-06  Score=62.82  Aligned_cols=98  Identities=6%  Similarity=-0.095  Sum_probs=75.0

Q ss_pred             CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHH
Q 037178          162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNA  240 (311)
Q Consensus       162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  240 (311)
                      |+...+-.....|.+.|++++|+..|++...   +.| +...|..+..+|.+.|++++|...+....+.. +-+..+|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHH
Confidence            4455566667788888888888888888765   345 45667788888888888888888888877653 335778888


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCC
Q 037178          241 LIAMYGKCAFVEEMVKLFEVMPE  263 (311)
Q Consensus       241 li~~~~~~g~~~~A~~~~~~m~~  263 (311)
                      +..+|.+.|++++|...|++..+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888888887664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-05  Score=58.20  Aligned_cols=88  Identities=8%  Similarity=-0.028  Sum_probs=51.6

Q ss_pred             HHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCC
Q 037178          140 ITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIAD  215 (311)
Q Consensus       140 l~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~  215 (311)
                      .+.|.+.|++++|...|++..   ..+...|..+..+|...|++++|.+.|++..+   +.|+. ..|..+..++...|+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHHHHHHcCC
Confidence            344556666666666666543   23555666666666666666666666666654   23432 456666666666666


Q ss_pred             hhhHHHHHHHHHHhC
Q 037178          216 VGFGSGVHGMAAKMG  230 (311)
Q Consensus       216 ~~~a~~~~~~m~~~g  230 (311)
                      +++|...+++..+..
T Consensus        94 ~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          94 FRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            666666666665553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=5.7e-07  Score=74.67  Aligned_cols=213  Identities=7%  Similarity=-0.088  Sum_probs=154.6

Q ss_pred             CCCcccHHHHHHHHHhcCC-CHHHHHHHHHhhcc-CCCChhhHHH-HHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178           60 STQGLHFLQEITTLCEESK-SLNKALSLLQENLH-NADLKEATGV-LLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN  136 (311)
Q Consensus        60 ~~~~~~~~~li~~~~~~g~-~~~~a~~~~~~m~~-~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  136 (311)
                      ..+...|..+..++...+. ++++|+..+.++.+ .+.+...+.. ....+...+..+.|...++.+. +.+ +-+...|
T Consensus       104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i-~~~-p~~~~a~  181 (334)
T d1dcea1         104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRN-FSNYSSW  181 (334)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTT-CCCHHHH
T ss_pred             CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHH-HcC-CCCHHHH
Confidence            3455567766666666551 58999999999988 5556666544 4456667899999999999988 554 4577888


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178          137 TRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV  216 (311)
Q Consensus       137 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  216 (311)
                      +.+...+.+.|++++|...++...+-.... ......+...+..+++...+..... . -.++...+..+...+...|+.
T Consensus       182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~-~-~~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLL-G-RAEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHH-S-CCCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHH-h-CcchhhHHHHHHHHHHHHhhH
Confidence            889999999999998876665544321111 2233445566788888888888765 2 234455667777788888999


Q ss_pred             hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHh
Q 037178          217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSE  278 (311)
Q Consensus       217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~  278 (311)
                      ++|...+.+..+.. +.+..++..+...|.+.|++++|.+.+++..+-|+   .-|+.|...+.-
T Consensus       259 ~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         259 LESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            99999988776654 34678888899999999999999999999986333   456666555553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=9.7e-06  Score=61.47  Aligned_cols=96  Identities=7%  Similarity=-0.142  Sum_probs=66.3

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHH
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALV  171 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li  171 (311)
                      |+...+......+.+.|++++|...|..+. +.. +.+...|+.+..+|.+.|++++|...|++..+  | +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal-~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            455556666666777777777777777766 443 44566677777777777777777777777653  3 556777777


Q ss_pred             HHHHhCCChhhHHHHHHHhhh
Q 037178          172 SGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      .+|.+.|++++|+..|++...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777776543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.1e-05  Score=54.33  Aligned_cols=85  Identities=5%  Similarity=-0.095  Sum_probs=43.8

Q ss_pred             hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhh
Q 037178          106 ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTD  182 (311)
Q Consensus       106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~  182 (311)
                      .+...|++++|...|++.. +.. +-+...|..+-.+|.+.|++++|...|+...   ..+...|..+..++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAI-KLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH-hcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            3444555555555555554 332 3334445555555555555555555555433   2344555555555555555555


Q ss_pred             HHHHHHHhhh
Q 037178          183 VLSIFVELSS  192 (311)
Q Consensus       183 a~~~~~~m~~  192 (311)
                      |+..|++..+
T Consensus        90 A~~~~~~a~~   99 (117)
T d1elwa_          90 AKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.6e-05  Score=56.96  Aligned_cols=84  Identities=7%  Similarity=-0.096  Sum_probs=40.9

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhH
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDV  183 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a  183 (311)
                      +.+.|++++|...|++.. +.. +-+...|..+..+|.+.|++++|...|++..   ..+..+|..+..++...|++++|
T Consensus        20 ~~~~~~y~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAI-ELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHhhhcc-ccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence            334455555555555444 332 2334444445555555555555555555432   22444555555555555555555


Q ss_pred             HHHHHHhhh
Q 037178          184 LSIFVELSS  192 (311)
Q Consensus       184 ~~~~~~m~~  192 (311)
                      ...|++...
T Consensus        98 ~~~~~~a~~  106 (159)
T d1a17a_          98 LRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.4e-05  Score=53.21  Aligned_cols=86  Identities=12%  Similarity=0.001  Sum_probs=45.9

Q ss_pred             HHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCCh
Q 037178          141 TMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADV  216 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~  216 (311)
                      +.+.+.|++++|...|++..   ..+...|..+..+|.+.|++++|+..+++...   +.| +...|..+..++...|++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH---hccchhhHHHHHHHHHHHccCH
Confidence            34455555555555555543   22445555555555555555555555555544   222 334455555555555555


Q ss_pred             hhHHHHHHHHHHh
Q 037178          217 GFGSGVHGMAAKM  229 (311)
Q Consensus       217 ~~a~~~~~~m~~~  229 (311)
                      ++|...++...+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.04  E-value=1.6e-05  Score=54.51  Aligned_cols=89  Identities=9%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178           67 LQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL  145 (311)
Q Consensus        67 ~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~  145 (311)
                      -.+-..+.+.| ++++|+..|++... .+-+...|..+..++.+.|++++|...++... +.. +.+..++..|...|..
T Consensus        20 ~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          20 MEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLD-PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccc-ccc-cccccchHHHHHHHHH
Confidence            34555677788 88888888888887 55567778888888888888888888888877 544 4456677778888888


Q ss_pred             cCChhHHHHHHHh
Q 037178          146 CGFPLDSRRVFDS  158 (311)
Q Consensus       146 ~g~~~~A~~l~~~  158 (311)
                      .|++++|.+.|++
T Consensus        97 ~g~~~~A~~~l~~  109 (112)
T d1hxia_          97 EHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            8888888888775

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.95  E-value=2.9e-05  Score=53.15  Aligned_cols=83  Identities=11%  Similarity=0.031  Sum_probs=38.3

Q ss_pred             HHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178          173 GFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV  251 (311)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  251 (311)
                      .+.+.|++++|...|++...   ..|+ ...|..+..++.+.|++++|...++...+.. +.+..++..+...|...|++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            34444455555555544433   2232 3344444444444455555555554444443 23344444455555555555


Q ss_pred             HHHHHHHh
Q 037178          252 EEMVKLFE  259 (311)
Q Consensus       252 ~~A~~~~~  259 (311)
                      ++|.+.++
T Consensus       101 ~~A~~~l~  108 (112)
T d1hxia_         101 NAALASLR  108 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.3e-05  Score=53.78  Aligned_cols=87  Identities=7%  Similarity=-0.090  Sum_probs=44.2

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH---HHHHHHHhhCCCCC--h---hhHHHHHHHH
Q 037178          205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV---EEMVKLFEVMPERN--L---VSWNSIICGF  276 (311)
Q Consensus       205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~--~---~~y~~li~~~  276 (311)
                      .+++.+...+++++|++.|+...+.+ +.+..++..+..++.+.++.   ++|.++|++..+.+  .   .+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34455555555555555555555554 34455555555555543332   34555555554321  1   1344455555


Q ss_pred             HhCCCcchHHHHHHhh
Q 037178          277 SENGFSCESFDLLIKM  292 (311)
Q Consensus       277 ~~~g~~~~a~~l~~~m  292 (311)
                      .+.|++++|.+.|++.
T Consensus        83 ~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          83 YRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHH
Confidence            5555555555555555

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=6.5e-05  Score=52.17  Aligned_cols=90  Identities=12%  Similarity=-0.084  Sum_probs=40.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC---ChhHHHHHHHHHHhhcCCCchh-hHHHHHHHH
Q 037178           68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK---DIEIGKRVHELVSASTQFSNDF-IINTRLITM  142 (311)
Q Consensus        68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~-~~~~~ll~~  142 (311)
                      .+++.+...+ ++++|.+.|++... .+.+..++..+..++.+.+   +.++|..+++.+. ..+..|+. .++..|..+
T Consensus         4 ~l~n~~~~~~-~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVE-DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHH-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHH
Confidence            3444455555 55555555555555 4444444444444444322   2234555555544 32222221 133334444


Q ss_pred             HHhcCChhHHHHHHHhc
Q 037178          143 YSLCGFPLDSRRVFDSL  159 (311)
Q Consensus       143 ~~~~g~~~~A~~l~~~m  159 (311)
                      |.+.|++++|.+.|++.
T Consensus        82 y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHH
Confidence            44445554444444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.0003  Score=52.25  Aligned_cols=120  Identities=12%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178           69 EITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF  148 (311)
Q Consensus        69 li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~  148 (311)
                      .-......| ++++|.+.|.+.....+....        ......+.+...-..+.     ......+..+...+.+.|+
T Consensus        17 ~g~~~~~~g-~~e~A~~~~~~AL~l~rG~~l--------~~~~~~~w~~~~r~~l~-----~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAG-RFEQASRHLSAALREWRGPVL--------DDLRDFQFVEPFATALV-----EDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHTTCCSSTT--------GGGTTSTTHHHHHHHHH-----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHhhCccccc--------ccCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCC
Confidence            334666777 888888888887772221110        00111111112222222     1223456667777777888


Q ss_pred             hhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhh----cCCCCCCcch
Q 037178          149 PLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSS----DTELKPDNFT  202 (311)
Q Consensus       149 ~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~t  202 (311)
                      +++|...+++..  .| +...|..++.+|.+.|+..+|++.|++...    ..|+.|+..+
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            888888777765  23 667788888888888888888877777632    1466666543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00027  Score=51.99  Aligned_cols=61  Identities=8%  Similarity=0.013  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM  229 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  229 (311)
                      +|+.+..+|.+.|++++|+..+++...   +.| +...|..+..++...|++++|...|+...+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhh---ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            345555556666666666666655544   234 3445555555566666666666666665554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00029  Score=51.83  Aligned_cols=74  Identities=5%  Similarity=-0.174  Sum_probs=60.5

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGF  276 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~  276 (311)
                      +|+.+..+|.+.|++++|...++..++.. +.+..+|..+..+|...|++++|...|++..+  | |..+...+-...
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56778888999999999999999999886 55889999999999999999999999999875  4 444444443333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.00039  Score=50.95  Aligned_cols=81  Identities=11%  Similarity=0.031  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      ...|+.+..++.+.|++++|+..+++..+   +.|+ ...|..+..++.+.|++++|...|+...+.. +.+..++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~  152 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            34566677777777777777777777765   3443 4567777777777777777777777777664 33555555555


Q ss_pred             HHHHhc
Q 037178          243 AMYGKC  248 (311)
Q Consensus       243 ~~~~~~  248 (311)
                      .++.+.
T Consensus       153 ~~~~~l  158 (169)
T d1ihga1         153 KVKQKI  158 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00014  Score=50.75  Aligned_cols=89  Identities=11%  Similarity=0.017  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC---CCCc---HHHHH
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG---LIGD---VFVSN  239 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~---~~~~~  239 (311)
                      +-.+-..+.+.|++++|+..|.+..+   +.| +...+..+..++.+.|++++|...++++++..   ....   ..+|.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKE---LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            33445555566666666666665554   223 23445555555566666666666555554321   0000   12344


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 037178          240 ALIAMYGKCAFVEEMVKLF  258 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~  258 (311)
                      .+...+...+++++|.+.|
T Consensus        84 ~lg~~~~~~~~~~~A~~~~  102 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFY  102 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHH
Confidence            4444444555555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.00029  Score=52.32  Aligned_cols=120  Identities=9%  Similarity=-0.076  Sum_probs=81.6

Q ss_pred             HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhH
Q 037178          104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDV  183 (311)
Q Consensus       104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a  183 (311)
                      .......|++++|.+.|.... ...  ++...        ...+..+-+...-..+.......+..+...+.+.|++++|
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL-~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAAL-REW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-TTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-hhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            345667888888888888877 431  11100        0001111111111222223445788899999999999999


Q ss_pred             HHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHH-----hCCCCcHHH
Q 037178          184 LSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAK-----MGLIGDVFV  237 (311)
Q Consensus       184 ~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~  237 (311)
                      +..+++..+   ..| +...|..++.++.+.|+.++|.+.|++..+     .|+.|+..+
T Consensus        87 l~~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            999999876   445 567899999999999999999999988744     589988655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.49  E-value=0.0011  Score=47.71  Aligned_cols=60  Identities=12%  Similarity=-0.079  Sum_probs=33.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      +|+.+..++.+.|++++|.+.+....+.. +.+..+|..+..+|...|++++|...|++..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            34445555555555555555555555543 3355555555555555555555555555554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00061  Score=47.38  Aligned_cols=86  Identities=14%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-C-------hHHHHHHHHHH
Q 037178          105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-N-------LFQWNALVSGF  174 (311)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~-------~~~y~~li~~~  174 (311)
                      ..+.+.|++++|...|.+.. +.+ +.+..++..+..+|.+.|++++|...+++..+  | +       ..+|..+...+
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAK-ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444 332 22344444445555555555555555444331  0 0       12444555555


Q ss_pred             HhCCChhhHHHHHHHhhh
Q 037178          175 TKNELYTDVLSIFVELSS  192 (311)
Q Consensus       175 ~~~g~~~~a~~~~~~m~~  192 (311)
                      ...+++++|++.|++-..
T Consensus        90 ~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            666666666666665543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=0.0098  Score=48.35  Aligned_cols=207  Identities=7%  Similarity=-0.064  Sum_probs=131.4

Q ss_pred             CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      +|..--..+..-|.+.| .++.|..+|..+..       |..++..+.+.++++.|.++.....       +..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~-lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEK-MYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC   76 (336)
T ss_dssp             C-----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCC-CHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHH
Confidence            34444455666677888 89999999976654       6777788888888888877765442       344777777


Q ss_pred             HHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178          141 TMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS  220 (311)
Q Consensus       141 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~  220 (311)
                      ..+.+......|.-+ ......+......++..|-..|.+++...+++.... . -..+...++.++..+++.+    ..
T Consensus        77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~-~-~~~~~~~~~~L~~lyak~~----~~  149 (336)
T d1b89a_          77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALG-L-ERAHMGMFTELAILYSKFK----PQ  149 (336)
T ss_dssp             HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-TTCCHHHHHHHHHHHHTTC----HH
T ss_pred             HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-C-CccchHHHHHHHHHHHHhC----hH
Confidence            788777666554322 111222444556789999999999999999997643 2 2345667888988888864    23


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC------------ChhhHHHHHHHHHhCCCcchHHHH
Q 037178          221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER------------NLVSWNSIICGFSENGFSCESFDL  288 (311)
Q Consensus       221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~~y~~li~~~~~~g~~~~a~~l  288 (311)
                      ++.+.+....-..|   ..-++..|-+.+.++++.-++..+.+.            ++.-....+..+.+.++.+...++
T Consensus       150 kl~e~l~~~s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~  226 (336)
T d1b89a_         150 KMREHLELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA  226 (336)
T ss_dssp             HHHHHHHHHSTTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred             HHHHHHHhccccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHH
Confidence            45555554332222   245667778888888888888888762            344456678888999999888887


Q ss_pred             HHhh
Q 037178          289 LIKM  292 (311)
Q Consensus       289 ~~~m  292 (311)
                      +...
T Consensus       227 i~~y  230 (336)
T d1b89a_         227 IQFY  230 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.28  E-value=0.0021  Score=46.80  Aligned_cols=59  Identities=8%  Similarity=-0.179  Sum_probs=30.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                      |+.+..++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444455555555555555555443 3345555555555555555555555555544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.21  E-value=0.0026  Score=45.56  Aligned_cols=62  Identities=11%  Similarity=-0.058  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      +|+.+..+|.+.|++++|++.+++..+   +.| +..+|..+..++...|++++|...|+...+..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~---~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccc---ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            455555556666666666666666544   233 34556666666666666666666666655553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.16  E-value=0.00027  Score=56.05  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=25.3

Q ss_pred             hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178           75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS  124 (311)
Q Consensus        75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  124 (311)
                      +.| ++++|+..+++..+ .+.|...+..+...++..|++++|...++...
T Consensus         8 ~~G-~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           8 SEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             TTT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344 55555555555554 33444455555555555555555555555554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.00091  Score=48.87  Aligned_cols=73  Identities=4%  Similarity=-0.169  Sum_probs=52.6

Q ss_pred             chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHH
Q 037178          201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIIC  274 (311)
Q Consensus       201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~  274 (311)
                      ..|..+..++.+.|++++|...+...++.. +.+...|..+..+|.+.|++++|.+.|++..+  | |..++..+..
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456666777788888888888888887765 45677888888888888888888888887764  3 3344444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.02  E-value=0.00047  Score=54.57  Aligned_cols=121  Identities=7%  Similarity=-0.112  Sum_probs=85.3

Q ss_pred             cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhH
Q 037178          107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDV  183 (311)
Q Consensus       107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a  183 (311)
                      ..+.|++++|...+++.+ +.. +-|...+..|...|+..|++++|.+.|+...+  | +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al-~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAI-KAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHH-HTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            456799999999999998 655 66788999999999999999999999998763  4 445565555555444444443


Q ss_pred             HHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          184 LSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       184 ~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      ..-...-.. .+-.++...+......+...|+.++|.+.+..+.+..
T Consensus        84 ~~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            332221111 1111233445556677889999999999999988763

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.99  E-value=0.011  Score=42.64  Aligned_cols=58  Identities=9%  Similarity=-0.131  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS  192 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~  192 (311)
                      +|+.+-.+|.+.|++++|...++...   ..+..+|..+..++...|++++|...|++...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555555555555433   22445555555555555555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.055  Score=41.73  Aligned_cols=221  Identities=10%  Similarity=-0.044  Sum_probs=141.5

Q ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178           65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDFIINTRLI  140 (311)
Q Consensus        65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll  140 (311)
                      .+..|-..+.+.+ ++++|++.|++..+. -|...+..+-..+..    ..+...+...+.... +.+   +......|.
T Consensus         4 ~~~~lG~~~~~~~-d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEK-DFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-ccc---ccchhhccc
Confidence            4556666677888 999999999998762 244444444444443    568888988888887 555   223333344


Q ss_pred             HHHHh----cCChhHHHHHHHhcCCC-ChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178          141 TMYSL----CGFPLDSRRVFDSLKTR-NLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG  211 (311)
Q Consensus       141 ~~~~~----~g~~~~A~~l~~~m~~~-~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~  211 (311)
                      ..+..    .++.+.|...++...+. .......+...+..    ......+...+.....    ..+...+..+...+.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhc
Confidence            44433    46678888888765432 33333333333332    3455666666666544    235556666766666


Q ss_pred             c----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----
Q 037178          212 G----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE----  278 (311)
Q Consensus       212 ~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~----  278 (311)
                      .    ..+...+..++....+.|   +......+-..|..    ..++++|...|++..+ -+...+..|...|.+    
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             cCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCC
Confidence            4    345566777777766665   45555556556654    5689999999988775 466677777777765    


Q ss_pred             CCCcchHHHHHHhhhhccCCCC
Q 037178          279 NGFSCESFDLLIKMMGCEEGFI  300 (311)
Q Consensus       279 ~g~~~~a~~l~~~m~~~~~g~~  300 (311)
                      ..+.++|.++|++.  ...|-.
T Consensus       231 ~~n~~~A~~~~~kA--a~~g~~  250 (265)
T d1ouva_         231 TRNEKQAIENFKKG--CKLGAK  250 (265)
T ss_dssp             SCCSTTHHHHHHHH--HHHTCH
T ss_pred             ccCHHHHHHHHHHH--HHCcCH
Confidence            34788999999988  666643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.91  E-value=0.0059  Score=43.65  Aligned_cols=91  Identities=10%  Similarity=-0.029  Sum_probs=54.2

Q ss_pred             HHHHhCCChhhHHHHHHHhhhcCCCCCC----------cchHHHHHHHHhccCChhhHHHHHHHHHHh-----CCCC---
Q 037178          172 SGFTKNELYTDVLSIFVELSSDTELKPD----------NFTFPCVIKACGGIADVGFGSGVHGMAAKM-----GLIG---  233 (311)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~---  233 (311)
                      ..+.+.|++++|+..|++..+-..-.|+          ...|+.+-.++.+.|++++|...+++..+.     ...+   
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            3444556667666666665431111121          235666667777777777777766665532     1111   


Q ss_pred             --cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178          234 --DVFVSNALIAMYGKCAFVEEMVKLFEVMP  262 (311)
Q Consensus       234 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~  262 (311)
                        ...+++.+..+|.+.|++++|...|++..
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              12356677788888888888888877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.73  E-value=0.0024  Score=45.84  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             hHHHH--HHHHhccCChhhHHHHHHHHHHhCCC-C----------cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 037178          202 TFPCV--IKACGGIADVGFGSGVHGMAAKMGLI-G----------DVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----  263 (311)
Q Consensus       202 t~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----  263 (311)
                      +|..+  .......|++++|...|.+..+..-. |          ....|+.+..+|.+.|++++|...+++..+     
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            45555  44566789999999999998764211 1          246899999999999999999988887652     


Q ss_pred             ----CC-----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          264 ----RN-----LVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       264 ----~~-----~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                          ++     ..+|+.+-.+|...|++++|.+.|++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence                11     236788899999999999999999987

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.70  E-value=0.0021  Score=45.64  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          179 LYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       179 ~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      .+++|.+.|++..+   +.|+..+|..-+..+      .++.+++.+..+.|
T Consensus       101 ~~~~A~~~~~kal~---l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         101 NFDLATQFFQQAVD---EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             hHHHhhhhhhcccc---cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            35667777777655   567666555444433      34556666655554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.62  E-value=0.085  Score=40.58  Aligned_cols=190  Identities=10%  Similarity=-0.036  Sum_probs=121.3

Q ss_pred             ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh----cCChhHHHHHHHhcCCC-ChHHHHHH
Q 037178           96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL----CGFPLDSRRVFDSLKTR-NLFQWNAL  170 (311)
Q Consensus        96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~-~~~~y~~l  170 (311)
                      |+..+.-+...+-..++.++|.+.|++.. +.|   +...+-.|-..|..    ..+...|...++.-.+. +......+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence            34555566666778899999999999998 666   33444446677765    56788888888876543 55555555


Q ss_pred             HHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh----ccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178          171 VSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG----GIADVGFGSGVHGMAAKMGLIGDVFVSNALI  242 (311)
Q Consensus       171 i~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  242 (311)
                      ...+..    .++.+.|...+++... .|...   ....+...+.    .......+...+......+   +...+..|.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~-~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~  149 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACD-LKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  149 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhh-hhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence            555443    4677889998888776 44322   1222222222    2334555666666555443   566777777


Q ss_pred             HHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCC
Q 037178          243 AMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEG  298 (311)
Q Consensus       243 ~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g  298 (311)
                      ..|..    ..+...+...++...+ .+..+...+-..|..    ..+.++|..+|++.  .+.|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a--a~~g  212 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA--CELE  212 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH--HHTT
T ss_pred             hhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhh--hccc
Confidence            77775    4566777777776654 356666666555655    55788888888887  4544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.0034  Score=44.46  Aligned_cols=112  Identities=6%  Similarity=-0.139  Sum_probs=78.6

Q ss_pred             HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccC----------CChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178           74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHE----------KDIEIGKRVHELVSASTQFSNDFIINTRLITM  142 (311)
Q Consensus        74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~  142 (311)
                      -+.+ .+++|...|+...+ .+.+...+..+..++...          +.+++|...|+... +.. +.+..+|..+..+
T Consensus         8 ~r~~-~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl-~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRIL-LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred             HHHc-cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-Hhc-chhhHHHhhHHHH
Confidence            3455 79999999999999 666677787777777643          44578999999988 655 4566778888888


Q ss_pred             HHhcCC-----------hhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178          143 YSLCGF-----------PLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE  195 (311)
Q Consensus       143 ~~~~g~-----------~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~  195 (311)
                      |...|+           +++|.+.|++..  +|+...|..-+..+      .+|.+++.+..+ .|
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k-~~  143 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYK-QG  143 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHH-SS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHH-Hh
Confidence            876553           577888888765  56555554444333      466777777665 44

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.52  E-value=0.14  Score=41.18  Aligned_cols=183  Identities=14%  Similarity=0.065  Sum_probs=110.2

Q ss_pred             CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-Ch---------
Q 037178           95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR-NL---------  164 (311)
Q Consensus        95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~---------  164 (311)
                      .+......++..+-..|..++...+++... ... ..+...++-|+..|++.+. ++-.+.+...... |.         
T Consensus        97 ~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~-~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~  173 (336)
T d1b89a_          97 VHADELEELINYYQDRGYFEELITMLEAAL-GLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQ  173 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcCChHHHHHHHHHHH-cCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHH
Confidence            344555667777777777777777777665 322 4566677778888887653 3333333332211 11         


Q ss_pred             -HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          165 -FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       165 -~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                       ..|.-++-.|.+.|.+++|..+.-+      ..++..-....+..+.+.++.+...++.....+.  .|  ...+.++.
T Consensus       174 ~~l~~elv~Ly~~~~~~~~A~~~~i~------~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~  243 (336)
T d1b89a_         174 AHLWAELVFLYDKYEEYDNAIITMMN------HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLM  243 (336)
T ss_dssp             TTCHHHHHHHHHHTTCHHHHHHHHHH------STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHH
T ss_pred             cCChHHHHHHHHhcCCHHHHHHHHHH------cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHH
Confidence             1245555555555555555544321      2345555666777788888888777777766654  23  33456666


Q ss_pred             HHHhcCCHHHHHHHHhhCCC--------------CChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178          244 MYGKCAFVEEMVKLFEVMPE--------------RNLVSWNSIICGFSENGFSCESFDLLI  290 (311)
Q Consensus       244 ~~~~~g~~~~A~~~~~~m~~--------------~~~~~y~~li~~~~~~g~~~~a~~l~~  290 (311)
                      .....-+..+..+.+++-..              -+..+.+++...|...++++.-.+..+
T Consensus       244 ~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         244 VLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             HHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            66666666666666665432              245688999999999998766554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.003  Score=54.64  Aligned_cols=108  Identities=9%  Similarity=-0.129  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCCCh-HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhc
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTRNL-FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGG  212 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~  212 (311)
                      .+..+...+.+.|+.++|...++...+++. .++..+...+...|++++|...|++..+   +.|+. ..|+.+-..+..
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHH
Confidence            333444444444554444444333222211 2344444455555555555555555443   33432 345555555555


Q ss_pred             cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178          213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG  246 (311)
Q Consensus       213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  246 (311)
                      .|+..+|...|.+..... +|-..++..|...|.
T Consensus       199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            555555555555444433 334444444444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0055  Score=52.92  Aligned_cols=129  Identities=8%  Similarity=-0.126  Sum_probs=75.1

Q ss_pred             hcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHH
Q 037178          145 LCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSG  221 (311)
Q Consensus       145 ~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~  221 (311)
                      ..|.++.|...+...-+   ++...|..+...+.+.|+.++|...+++... .  .| ..++..+-..+...|++++|..
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~--~~-~~~~~~LG~l~~~~~~~~~A~~  173 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS-Y--IC-QHCLVHLGDIARYRNQTSQAES  173 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHH-H--HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC-C--CH-HHHHHHHHHHHHHcccHHHHHH
Confidence            34666777666655432   3556788888888899999999888766544 1  11 2467778888999999999999


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 037178          222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSE  278 (311)
Q Consensus       222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~  278 (311)
                      .+.+..+.. +-+...|+.|...|...|+..+|...|.+...   |-..+++.|...|.+
T Consensus       174 ~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         174 YYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            999998885 55779999999999999999999999887653   444555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.026  Score=36.33  Aligned_cols=62  Identities=8%  Similarity=-0.145  Sum_probs=30.2

Q ss_pred             HHHHHHHhCCChhhHHHHHHHhhhcC----CCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178          169 ALVSGFTKNELYTDVLSIFVELSSDT----ELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMG  230 (311)
Q Consensus       169 ~li~~~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  230 (311)
                      .+...+.+.|++++|...|++..+..    ...++ ..++..+-.++.+.|++++|...++++.+..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            34445555555555555555543200    01111 1245555555556666666666665555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.033  Score=35.81  Aligned_cols=71  Identities=13%  Similarity=-0.158  Sum_probs=52.0

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHhC-----CCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHH
Q 037178          202 TFPCVIKACGGIADVGFGSGVHGMAAKMG-----LIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-LVSWNSI  272 (311)
Q Consensus       202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~y~~l  272 (311)
                      .+-.+-..+.+.|++++|...+++..+..     ..+ ...+++.+..+|.+.|++++|.+.+++..+  |+ ..+++.+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34466777889999999999998876541     111 256888899999999999999999998875  43 3344443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.07  E-value=0.19  Score=33.85  Aligned_cols=53  Identities=11%  Similarity=0.040  Sum_probs=22.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178          240 ALIAMYGKCAFVEEMVKLFEVMP---ERNLVSWNSIICGFSENGFSCESFDLLIKM  292 (311)
Q Consensus       240 ~li~~~~~~g~~~~A~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~l~~~m  292 (311)
                      ..++.+.+.|+-+.-.++++++.   ++++...-.+..+|-+-|...++.+++.+.
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            33344444444444444443322   233334444444444444444444444444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.18  E-value=0.35  Score=32.71  Aligned_cols=110  Identities=7%  Similarity=-0.025  Sum_probs=63.4

Q ss_pred             ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHH
Q 037178          179 LYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEM  254 (311)
Q Consensus       179 ~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A  254 (311)
                      ++++|.+.|++..+ .|   +...+..+.  .....+.++|.+++.+..+.|   +...+..|-..|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~-~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACE-LN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHH-TT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHH-CC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            55666777766655 44   222222222  233456677777777776666   33444455555543    3456777


Q ss_pred             HHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCCC
Q 037178          255 VKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEGF  299 (311)
Q Consensus       255 ~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g~  299 (311)
                      .++|++..+ -++.....|-..|..    ..+.++|.++|++.  .+.|.
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A--a~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA--CRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH--HHCCC
Confidence            777777654 344555555555555    34677788888776  55553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.33  E-value=0.99  Score=30.27  Aligned_cols=64  Identities=13%  Similarity=-0.036  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 037178          167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI  232 (311)
Q Consensus       167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  232 (311)
                      .+..++...+.|+-+.-.+++.++.+  +-+|+......+..||.+.|...++.+++.+..+.|++
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            44556666667776766666666543  33455556666667777777777777777776666643

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.37  E-value=1.4  Score=27.87  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178          180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA  243 (311)
Q Consensus       180 ~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  243 (311)
                      .-++.+-+..+.. ..+.|+.....+.++||.+.+++..|.++++-++.+. ..+...|..+++
T Consensus        22 ~we~rrgmN~l~~-~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          22 AWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            3345555555555 6667777777777777777777777777777665442 334556665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=88.56  E-value=2.3  Score=28.29  Aligned_cols=16  Identities=13%  Similarity=0.162  Sum_probs=8.0

Q ss_pred             ChhhHHHHHHHHHHhC
Q 037178          215 DVGFGSGVHGMAAKMG  230 (311)
Q Consensus       215 ~~~~a~~~~~~m~~~g  230 (311)
                      +.++|.++++...+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4445555555544444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.47  E-value=1.9  Score=27.29  Aligned_cols=64  Identities=11%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             HhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHH
Q 037178          210 CGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSII  273 (311)
Q Consensus       210 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li  273 (311)
                      +.+.. +..++.+-++.+....+.|+..+..+.+.+|.|.+++.-|.++|+..+.   .+...|.-++
T Consensus        15 F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil   82 (105)
T d1v54e_          15 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   82 (105)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             hcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            33443 6667888888888889999999999999999999999999999997763   3344565553

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.81  E-value=4  Score=27.22  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChh--hHHHHHHHhhhcCCCCC
Q 037178          135 INTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYT--DVLSIFVELSSDTELKP  198 (311)
Q Consensus       135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p  198 (311)
                      -...++.-|...|+.++|...++++..|   ..+.+..+..+.-+.+.-.  .+..++..+.. .|+-+
T Consensus         9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~-~~~is   76 (129)
T d2nsza1           9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTIT   76 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-CCCCC
Confidence            3456888899999999999999998765   3355666666666665543  35778888887 55433