Citrus Sinensis ID: 037256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680
Protein Sequence
MRRLGPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccEEHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHccccHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEccccccHHHHHHHHHHHHHcccHHHccccccccHEHccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEccccccccccccEcccccc
Coil and Loop (DISEMBL)
mrrlgpstegFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYttygepntarSLFNsihndksySFLWNTMIRAYANNGHCVETLELYSTMRrsgissnsytfPFVLKACasnslilegkvvhgdiirtgflsDSYVQAALVDMYakcgqtddgckvfdemsVRDLVSWTVMITAYEQAEKPEEALILFQKTqqegllsdsVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFdemqnsdckpnpVTALILVSACTYlgsrqlgrkfhgYIINSNMKIDATLRNAVMDMYAKcgdldtaenmfndihpsernvsSWNVLIAGygmhghgrKALEFFSQMLeegvkpdhitFTSILSACSHAGLIDEGRKCFADmtklsvkpevkHYACMVDMLGRAGCLYEAFDmikqmplppndsVWGALLLACRIHGEIAANylfqlepehtgyFVLMSNIYAASNKWREVGKLREDmknkglkkpaafSVIEygkdiqgfhtadrvnpYWKEVYKKVESMAVEIKMAgympdlscalhdvededrEHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIivrdanrfhhfeggtcscndyw
Flexible Loop (DISEMBL)
mrrlgpsteGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDAnrfhhfeggtcscndyw
Low Complexity Region (SEG)
MRRLGPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Disordered region (IsUnstruct)
*********GFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM*NKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND**
Disordered Region (DISOPRED)
****GPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Disordered Region (DISEMBL)
MRRLGPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Disordered Region (DISPRO)
*****PSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRLGPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	680	2.2.26 [Sep-21-2011]
O81767	823	Pentatricopeptide repeat-	yes	no	0.970	0.801	0.416	1e-158
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.982	0.962	0.380	1e-147
Q9LN01	741	Pentatricopeptide repeat-	no	no	0.972	0.892	0.391	1e-143
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.954	0.729	0.380	1e-142
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.972	0.817	0.391	1e-142
O82380	738	Pentatricopeptide repeat-	no	no	0.972	0.895	0.377	1e-141
Q9LW32	659	Pentatricopeptide repeat-	no	no	0.938	0.968	0.382	1e-139
P0C899	686	Putative pentatricopeptid	no	no	0.925	0.916	0.387	1e-138
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.951	0.816	0.377	1e-137
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.963	0.752	0.380	1e-135

>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2

 Score =  557 bits (1436), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/677 (41%), Positives = 423/677 (62%), Gaps = 17/677 (2%)

Query: 12  YDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
           +  +LK+C  +    +IH      G +   +++ A +I  Y+ Y     AR LF+ +   
Sbjct: 156 FPSVLKACRTVIDGNKIHCLALKFGFM-WDVYVAASLIHLYSRYKAVGNARILFDEMPVR 214

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
              S  WN MI  Y  +G+  E L L + +R    + +S T   +L AC        G  
Sbjct: 215 DMGS--WNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVT 268

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +H   I+ G  S+ +V   L+D+YA+ G+  D  KVFD M VRDL+SW  +I AYE  E+
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNA-FLEDLCIQN 250
           P  A+ LFQ+ +   +  D +T++S+AS + QLGD+   ++V G+ +    FLED+ I N
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 388

Query: 251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN-SDCK 309
           ++V MYA+ G V+ AR VF+ +   D+ISWN++++GY QNG ASEA+ +++ M+   +  
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 448

Query: 310 PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENM 369
            N  T + ++ AC+  G+ + G K HG ++ + + +D  +  ++ DMY KCG L+ A ++
Sbjct: 449 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508

Query: 370 FNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429
           F  I     N   WN LIA +G HGHG KA+  F +ML+EGVKPDHITF ++LSACSH+G
Sbjct: 509 FYQI--PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566

Query: 430 LIDEGRKCFADM-TKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGAL 488
           L+DEG+ CF  M T   + P +KHY CMVDM GRAG L  A   IK M L P+ S+WGAL
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626

Query: 489 LLACRIHG-----EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK 543
           L ACR+HG     +IA+ +LF++EPEH GY VL+SN+YA++ KW  V ++R     KGL+
Sbjct: 627 LSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLR 686

Query: 544 KPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE 603
           K   +S +E    ++ F+T ++ +P ++E+Y+++ ++  ++KM GY+PD    L DVED+
Sbjct: 687 KTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDD 746

Query: 604 DREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDA 663
           ++EH+L  HSE+LA+AF ++    +  +++ KNLRVC DCHS  +FIS I  R+IIVRD+
Sbjct: 747 EKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDS 806

Query: 664 NRFHHFEGGTCSCNDYW 680
           NRFHHF+ G CSC DYW
Sbjct: 807 NRFHHFKNGVCSCGDYW 823

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/686 (38%), Positives = 422/686 (61%), Gaps = 18/686 (2%)

Query: 5   GPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSL 64
           G  ++ FY  L+ S    A L+QIH+ L   GL      L  K+I   +++G+   AR +
Sbjct: 17  GIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGF-LITKLIHASSSFGDITFARQV 75

Query: 65  FNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS 124
           F+ +   +   F WN +IR Y+ N H  + L +YS M+ + +S +S+TFP +LKAC+  S
Sbjct: 76  FDDL--PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLS 133

Query: 125 LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--RDLVSWTVM 182
            +  G+ VH  + R GF +D +VQ  L+ +YAKC +      VF+ + +  R +VSWT +
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 183 ITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF 242
           ++AY Q  +P EAL +F + ++  +  D V +VSV +A   L D+ + +++H  ++    
Sbjct: 194 VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA-SVVKMG 252

Query: 243 LE---DLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLL 299
           LE   DL I  S+  MYA+CG V  A+++FD M+  +LI WN+M++GY +NG A EA+ +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 300 FDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359
           F EM N D +P+ ++    +SAC  +GS +  R  + Y+  S+ + D  + +A++DM+AK
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370

Query: 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT 419
           CG ++ A  +F+     +R+V  W+ +I GYG+HG  R+A+  +  M   GV P+ +TF 
Sbjct: 371 CGSVEGARLVFD--RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428

Query: 420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP 479
            +L AC+H+G++ EG   F  M    + P+ +HYAC++D+LGRAG L +A+++IK MP+ 
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 480 PNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLR 534
           P  +VWGALL AC+ H     GE AA  LF ++P +TG++V +SN+YAA+  W  V ++R
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 535 EDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLS 594
             MK KGL K    S +E    ++ F   D+ +P ++E+ ++VE +   +K  G++ +  
Sbjct: 549 VRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKD 608

Query: 595 CALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIY 654
            +LHD+ DE+ E  L  HSE++A+A+G+++      +++TKNLR C +CH+A + IS + 
Sbjct: 609 ASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLV 668

Query: 655 RRKIIVRDANRFHHFEGGTCSCNDYW 680
            R+I+VRD NRFHHF+ G CSC DYW
Sbjct: 669 DREIVVRDTNRFHHFKDGVCSCGDYW 694

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1

 Score =  510 bits (1313), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/708 (39%), Positives = 412/708 (58%), Gaps = 47/708 (6%)

Query: 15  LLKSCNFLASLRQIHSSLTTSGLINQALHLGAKI---IIKYTTYGEPNTARSLFNSIHND 71
           LL +C  L SLR IH+ +   GL N    L   I   I+     G P  A S+F +I   
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLP-YAISVFKTIQEP 97

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
                +WNTM R +A +   V  L+LY  M   G+  NSYTFPFVLK+CA +    EG+ 
Sbjct: 98  NL--LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFD---------------------- 169
           +HG +++ G   D YV  +L+ MY + G+ +D  KVFD                      
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215

Query: 170 ---------EMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASA 220
                    E+ V+D+VSW  MI+ Y +    +EAL LF+   +  +  D  T+V+V SA
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 221 VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISW 280
             Q G +   + VH +   + F  +L I N+++ +Y++CG +E A  +F+ +  +D+ISW
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335

Query: 281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN 340
           N+++ GY       EALLLF EM  S   PN VT L ++ AC +LG+  +GR  H YI  
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395

Query: 341 SNMKID--ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRK 398
               +   ++LR +++DMYAKCGD++ A  +FN I    +++SSWN +I G+ MHG    
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI--LHKSLSSWNAMIFGFAMHGRADA 453

Query: 399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK-LSVKPEVKHYACMV 457
           + + FS+M + G++PD ITF  +LSACSH+G++D GR  F  MT+   + P+++HY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513

Query: 458 DMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIA-----ANYLFQLEPEHTG 512
           D+LG +G   EA +MI  M + P+  +W +LL AC++HG +      A  L ++EPE+ G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573

Query: 513 YFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKE 572
            +VL+SNIYA++ +W EV K R  + +KG+KK    S IE    +  F   D+ +P  +E
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633

Query: 573 VYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQ 632
           +Y  +E M V ++ AG++PD S  L ++E+E +E  L +HSEKLA+AFG+++  P   + 
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 693

Query: 633 VTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
           + KNLRVC +CH A + IS IY+R+II RD  RFHHF  G CSCNDYW
Sbjct: 694 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/675 (38%), Positives = 405/675 (60%), Gaps = 26/675 (3%)

Query: 26  RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
           +Q+H+     G +N    +   ++  Y   G+  +++ L  S       +  WNT++ + 
Sbjct: 222 KQVHAYGLRKGELNS--FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT--WNTVLSSL 277

Query: 86  ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD- 144
             N   +E LE    M   G+  + +T   VL AC+   ++  GK +H   ++ G L + 
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337

Query: 145 SYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQ 204
           S+V +ALVDMY  C Q   G +VFD M  R +  W  MI  Y Q E  +EAL+LF   ++
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397

Query: 205 E-GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVE 263
             GLL++S T+  V  A  + G   + +A+HG+ +      D  +QN+++ MY+R G ++
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457

Query: 264 KARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSD-----------CKPNP 312
            A  +F  ME RDL++WN+M+TGY+ +    +ALLL  +MQN +            KPN 
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517

Query: 313 VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFND 372
           +T + ++ +C  L +   G++ H Y I +N+  D  + +A++DMYAKCG L  +  +F+ 
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577

Query: 373 IHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLID 432
           I   ++NV +WNV+I  YGMHG+G++A++    M+ +GVKP+ +TF S+ +ACSH+G++D
Sbjct: 578 I--PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD 635

Query: 433 EGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDS-VWGALLL 490
           EG + F  M     V+P   HYAC+VD+LGRAG + EA+ ++  MP   N +  W +LL 
Sbjct: 636 EGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLG 695

Query: 491 ACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKP 545
           A RIH     GEIAA  L QLEP    ++VL++NIY+++  W +  ++R +MK +G++K 
Sbjct: 696 ASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE 755

Query: 546 AAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDR 605
              S IE+G ++  F   D  +P  +++   +E++   ++  GY+PD SC LH+VE++++
Sbjct: 756 PGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEK 815

Query: 606 EHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANR 665
           E +L  HSEKLA+AFGI+N +P  +++V KNLRVCNDCH A +FIS I  R+II+RD  R
Sbjct: 816 EILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRR 875

Query: 666 FHHFEGGTCSCNDYW 680
           FH F+ GTCSC DYW
Sbjct: 876 FHRFKNGTCSCGDYW 890

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  506 bits (1303), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/680 (39%), Positives = 410/680 (60%), Gaps = 19/680 (2%)

Query: 12  YDQLLKSCNFLASLR---QIHSSLTTSGLINQALHLGAKIIIK--YTTYGEPNTARSLFN 66
           +  LLK C   A LR   +IH  L  SG    +L L A   ++  Y    + N AR +F+
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGF---SLDLFAMTGLENMYAKCRQVNEARKVFD 194

Query: 67  SIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI 126
            +      S  WNT++  Y+ NG     LE+  +M    +  +  T   VL A ++  LI
Sbjct: 195 RMPERDLVS--WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAY 186
             GK +HG  +R+GF S   +  ALVDMYAKCG  +   ++FD M  R++VSW  MI AY
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 187 EQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDL 246
            Q E P+EA+++FQK   EG+    V+++    A   LGD+ + + +H  ++      ++
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query: 247 CIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS 306
            + NS+++MY +C  V+ A  +F  ++ R L+SWN+M+ G+ QNG+  +AL  F +M++ 
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432

Query: 307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA 366
             KP+  T + +++A   L      +  HG ++ S +  +  +  A++DMYAKCG +  A
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 367 ENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426
             +F+ +  SER+V++WN +I GYG HG G+ ALE F +M +  +KP+ +TF S++SACS
Sbjct: 493 RLIFDMM--SERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550

Query: 427 HAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVW 485
           H+GL++ G KCF  M +  S++  + HY  MVD+LGRAG L EA+D I QMP+ P  +V+
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 486 GALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540
           GA+L AC+IH      E AA  LF+L P+  GY VL++NIY A++ W +VG++R  M  +
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query: 541 GLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDV 600
           GL+K    S++E   ++  F +    +P  K++Y  +E +   IK AGY+PD +  L  V
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GV 729

Query: 601 EDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIV 660
           E++ +E +L+ HSEKLA++FG++N T    + V KNLRVC DCH+A ++IS +  R+I+V
Sbjct: 730 ENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVV 789

Query: 661 RDANRFHHFEGGTCSCNDYW 680
           RD  RFHHF+ G CSC DYW
Sbjct: 790 RDMQRFHHFKNGACSCGDYW 809

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/708 (37%), Positives = 413/708 (58%), Gaps = 47/708 (6%)

Query: 15  LLKSCNFLASLRQIHSSLTTSGLINQALHLGAKI--IIKYTTYGEPNTARSLFNSIHNDK 72
           L++ C  L  L+Q H  +  +G  +   +  +K+  +   +++     AR +F+ I   K
Sbjct: 36  LIERCVSLRQLKQTHGHMIRTGTFSDP-YSASKLFAMAALSSFASLEYARKVFDEI--PK 92

Query: 73  SYSFLWNTMIRAYANNGHCVETLELYSTM-RRSGISSNSYTFPFVLKACASNSLILEGKV 131
             SF WNT+IRAYA+    V ++  +  M   S    N YTFPF++KA A  S +  G+ 
Sbjct: 93  PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 152

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +HG  +++   SD +V  +L+  Y  CG  D  CKVF  +  +D+VSW  MI  + Q   
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNS 251
           P++AL LF+K + E + +  VT+V V SA  ++ ++   + V  Y   N    +L + N+
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANA 272

Query: 252 IVAMYARCGNVEKARLVFDMME-------------------------------KRDLISW 280
           ++ MY +CG++E A+ +FD ME                               ++D+++W
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAW 332

Query: 281 NSMLTGYIQNGQASEALLLFDEMQ-NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYII 339
           N++++ Y QNG+ +EAL++F E+Q   + K N +T +  +SAC  +G+ +LGR  H YI 
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 392

Query: 340 NSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKA 399
              ++++  + +A++ MY+KCGDL+ +  +FN +   +R+V  W+ +I G  MHG G +A
Sbjct: 393 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV--EKRDVFVWSAMIGGLAMHGCGNEA 450

Query: 400 LEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADM-TKLSVKPEVKHYACMVD 458
           ++ F +M E  VKP+ +TFT++  ACSH GL+DE    F  M +   + PE KHYAC+VD
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVD 510

Query: 459 MLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGY 513
           +LGR+G L +A   I+ MP+PP+ SVWGALL AC+IH      E+A   L +LEP + G 
Sbjct: 511 VLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGA 570

Query: 514 FVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEV 573
            VL+SNIYA   KW  V +LR+ M+  GLKK    S IE    I  F + D  +P  ++V
Sbjct: 571 HVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKV 630

Query: 574 YKKVESMAVEIKMAGYMPDLSCALHDVEDED-REHMLNYHSEKLAVAFGIMNLTPEAVVQ 632
           Y K+  +  ++K  GY P++S  L  +E+E+ +E  LN HSEKLA+ +G+++     V++
Sbjct: 631 YGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIR 690

Query: 633 VTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
           V KNLRVC DCHS  + IS +Y R+IIVRD  RFHHF  G CSCND+W
Sbjct: 691 VIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/656 (38%), Positives = 398/656 (60%), Gaps = 18/656 (2%)

Query: 40  QALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYS 99
           +AL      ++    + E     +LFN  + DK+  F WN++I   A +G   E L  +S
Sbjct: 7   KALFCSVSRLLHTERHTERQNLTTLFNR-YVDKTDVFSWNSVIADLARSGDSAEALLAFS 65

Query: 100 TMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG 159
           +MR+  +     +FP  +KAC+S   I  GK  H      G+ SD +V +AL+ MY+ CG
Sbjct: 66  SMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG 125

Query: 160 QTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF------QKTQQEGLLSDSVT 213
           + +D  KVFDE+  R++VSWT MI  Y+      +A+ LF      +    + +  DS+ 
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185

Query: 214 IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG--NVEKARLVFDM 271
           +VSV SA  ++      +++H + I   F   + + N+++  YA+ G   V  AR +FD 
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 272 MEKRDLISWNSMLTGYIQNGQASEALLLFDEM-QNSDCKPNPVTALILVSACTYLGSRQL 330
           +  +D +S+NS+++ Y Q+G ++EA  +F  + +N     N +T   ++ A ++ G+ ++
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390
           G+  H  +I   ++ D  +  +++DMY KCG ++TA   F+ +    +NV SW  +IAGY
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM--KNKNVRSWTAMIAGY 363

Query: 391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT-KLSVKPE 449
           GMHGH  KALE F  M++ GV+P++ITF S+L+ACSHAGL  EG + F  M  +  V+P 
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPG 423

Query: 450 VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLF 504
           ++HY CMVD+LGRAG L +A+D+I++M + P+  +W +LL ACRIH      EI+   LF
Sbjct: 424 LEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLF 483

Query: 505 QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD 564
           +L+  + GY++L+S+IYA + +W++V ++R  MKN+GL KP  FS++E   ++  F   D
Sbjct: 484 ELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGD 543

Query: 565 RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMN 624
             +P  +++Y+ +  +  ++  AGY+ + S   HDV++E++E  L  HSEKLA+AFGIMN
Sbjct: 544 EEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMN 603

Query: 625 LTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
             P + V V KNLRVC+DCH+  + IS I  R+ +VRDA RFHHF+ G CSC DYW
Sbjct: 604 TVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659

Arabidopsis thaliana (taxid: 3702)

>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/678 (38%), Positives = 389/678 (57%), Gaps = 49/678 (7%)

Query: 14  QLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS 73
           Q+L +   + +LR +HS +    L   +  LG K++  Y +  +  +AR +F+ I   + 
Sbjct: 47  QVLDTYPDIRTLRTVHSRIILEDLRCNS-SLGVKLMRAYASLKDVASARKVFDEI--PER 103

Query: 74  YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH 133
              + N MIR+Y NNG   E ++++ TM    +  + YTFP VLKAC+ +  I+ G+ +H
Sbjct: 104 NVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIH 163

Query: 134 GDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPE 193
           G   + G  S  +V   LV MY KCG   +   V DEMS RD+VSW  ++  Y Q ++ +
Sbjct: 164 GSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFD 223

Query: 194 EALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV 253
           +AL + ++ +   +  D+ T+ S+  AV                  N   E         
Sbjct: 224 DALEVCREMESVKISHDAGTMASLLPAVS-----------------NTTTE--------- 257

Query: 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV 313
                  NV   + +F  M K+ L+SWN M+  Y++N    EA+ L+  M+    +P+ V
Sbjct: 258 -------NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAV 310

Query: 314 TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373
           +   ++ AC    +  LG+K HGYI    +  +  L NA++DMYAKCG L+ A ++F ++
Sbjct: 311 SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370

Query: 374 HPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDE 433
               R+V SW  +I+ YG  G G  A+  FS++ + G+ PD I F + L+ACSHAGL++E
Sbjct: 371 --KSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEE 428

Query: 434 GRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC 492
           GR CF  MT    + P ++H ACMVD+LGRAG + EA+  I+ M + PN+ VWGALL AC
Sbjct: 429 GRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC 488

Query: 493 RIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAA 547
           R+H     G +AA+ LFQL PE +GY+VL+SNIYA + +W EV  +R  MK+KGLKK   
Sbjct: 489 RVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPG 548

Query: 548 FSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREH 607
            S +E  + I  F   DR +P   E+Y++++ +  ++K  GY+PD   ALHDVE+ED+E 
Sbjct: 549 ASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKET 608

Query: 608 MLNYHSEKLAVAFGIMNLTPEA-----VVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRD 662
            L  HSEKLA+ F +MN   E       +++TKNLR+C DCH A + IS I  R+II+RD
Sbjct: 609 HLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRD 668

Query: 663 ANRFHHFEGGTCSCNDYW 680
            NRFH F  G CSC DYW
Sbjct: 669 TNRFHVFRFGVCSCGDYW 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  490 bits (1262), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/662 (37%), Positives = 383/662 (57%), Gaps = 15/662 (2%)

Query: 26  RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
           R IH      G  ++ L LG+ I+  Y  +     AR +F+ +    +   LWNTMI  Y
Sbjct: 139 RVIHGQAVVDGCDSELL-LGSNIVKMYFKFWRVEDARKVFDRMPEKDT--ILWNTMISGY 195

Query: 86  ANNGHCVETLELYSTM-RRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD 144
             N   VE+++++  +   S    ++ T   +L A A    +  G  +H    +TG  S 
Sbjct: 196 RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSH 255

Query: 145 SYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQ 204
            YV    + +Y+KCG+   G  +F E    D+V++  MI  Y    + E +L LF++   
Sbjct: 256 DYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELML 315

Query: 205 EGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264
            G    S T+VS+    G L   +   A+HGY + + FL    +  ++  +Y++   +E 
Sbjct: 316 SGARLRSSTLVSLVPVSGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIES 372

Query: 265 ARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY 324
           AR +FD   ++ L SWN+M++GY QNG   +A+ LF EMQ S+  PNPVT   ++SAC  
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQ 432

Query: 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWN 384
           LG+  LG+  H  + +++ +    +  A++ MYAKCG +  A  +F+ +  +++N  +WN
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM--TKKNEVTWN 490

Query: 385 VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT-K 443
            +I+GYG+HG G++AL  F +ML  G+ P  +TF  +L ACSHAGL+ EG + F  M  +
Sbjct: 491 TMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-----GEI 498
              +P VKHYACMVD+LGRAG L  A   I+ M + P  SVW  LL ACRIH        
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610

Query: 499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQ 558
            +  LF+L+P++ GY VL+SNI++A   + +   +R+  K + L K   +++IE G+   
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query: 559 GFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAV 618
            F + D+ +P  KE+Y+K+E +  +++ AGY P+   ALHDVE+E+RE M+  HSE+LA+
Sbjct: 671 VFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAI 730

Query: 619 AFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND 678
           AFG++   P   +++ KNLRVC DCH+  + IS I  R I+VRDANRFHHF+ G CSC D
Sbjct: 731 AFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790

Query: 679 YW 680
           YW
Sbjct: 791 YW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  484 bits (1246), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/671 (38%), Positives = 395/671 (58%), Gaps = 16/671 (2%)

Query: 22  LASLRQIHSSLTTSGLI-----NQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSF 76
            +SLR +H      G I      +   +G  ++  Y      ++AR +F+ +      S 
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS- 263

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDI 136
            WN++I  Y +NG   + L ++  M  SGI  +  T   V   CA + LI  G+ VH   
Sbjct: 264 -WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query: 137 IRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEAL 196
           ++  F  +      L+DMY+KCG  D    VF EMS R +VS+T MI  Y +     EA+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query: 197 ILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMY 256
            LF++ ++EG+  D  T+ +V +   +   + + + VH +   N    D+ + N+++ MY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442

Query: 257 ARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEM-QNSDCKPNPVTA 315
           A+CG++++A LVF  M  +D+ISWN+++ GY +N  A+EAL LF+ + +     P+  T 
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502

Query: 316 LILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP 375
             ++ AC  L +   GR+ HGYI+ +    D  + N+++DMYAKCG L  A  +F+DI  
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI-- 560

Query: 376 SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR 435
           + +++ SW V+IAGYGMHG G++A+  F+QM + G++ D I+F S+L ACSH+GL+DEG 
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620

Query: 436 KCFADMT-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI 494
           + F  M  +  ++P V+HYAC+VDML R G L +A+  I+ MP+PP+ ++WGALL  CRI
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 495 H-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFS 549
           H      E  A  +F+LEPE+TGY+VLM+NIYA + KW +V +LR+ +  +GL+K    S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query: 550 VIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHML 609
            IE    +  F   D  NP  + +   +  +   +   GY P    AL D E+ ++E  L
Sbjct: 741 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEAL 800

Query: 610 NYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHF 669
             HSEKLA+A GI++     +++VTKNLRVC DCH   +F+S + RR+I++RD+NRFH F
Sbjct: 801 CGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQF 860

Query: 670 EGGTCSCNDYW 680
           + G CSC  +W
Sbjct: 861 KDGHCSCRGFW 871

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	680
225448223	707	PREDICTED: pentatricopeptide repeat-cont	0.992	0.954	0.654	0.0
297739586	676	unnamed protein product [Vitis vinifera]	0.947	0.952	0.625	0.0
224119910	533	predicted protein [Populus trichocarpa]	0.775	0.988	0.741	0.0
255539985	543	pentatricopeptide repeat-containing prot	0.630	0.790	0.682	1e-173
148909481	795	unknown [Picea sitchensis]	0.992	0.849	0.420	1e-163
359475368	891	PREDICTED: pentatricopeptide repeat-cont	0.973	0.742	0.423	1e-160
147795292	891	hypothetical protein VITISV_001772 [Viti	0.973	0.742	0.420	1e-159
359488559	735	PREDICTED: pentatricopeptide repeat-cont	0.951	0.880	0.425	1e-159
359475558	848	PREDICTED: pentatricopeptide repeat-cont	0.976	0.783	0.420	1e-158
225423499	738	PREDICTED: pentatricopeptide repeat-cont	0.973	0.897	0.395	1e-158

>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Vitis vinifera]

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/686 (65%), Positives = 551/686 (80%), Gaps = 11/686 (1%)

Query: 6   PSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLF 65
           PS   FYD LL+ C  L +L+ IHSSL+T G +    H  A++II Y+  G+ ++AR+LF
Sbjct: 22  PSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLF 81

Query: 66  NSIH------NDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA 119
           +  H           SFL NTM+RAYAN G   E ++LY  M+R G+  N++T+PFVLK 
Sbjct: 82  DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141

Query: 120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSW 179
           CAS    + G+VVHG ++RTGF SD +V+AALVDMYAKCG+  D  +VFD M +RD+V W
Sbjct: 142 CASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201

Query: 180 TVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC 239
           T MIT YEQAE+P +AL+LF+K Q+EG L D +T +SVASAVGQLGD   A +VHGYA+ 
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVL 261

Query: 240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLL 299
           N F+ D+ + NSIV MYA+CGNVE+ARLVFD ME+R+ ISWNSML+GY QNG+ ++AL L
Sbjct: 262 NGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 321

Query: 300 FDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359
           F++MQ S+C PNPVTALI+VSAC+YLGS+ LGRK H ++I+S M ID TLRNA+MDMY K
Sbjct: 322 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381

Query: 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT 419
           CGDLDTA  MFN+    ER+VSSWNVLI+GYG+HGHG++ALE FS+M  EGV+P+ ITFT
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 441

Query: 420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP 479
           SILSACSHAGLIDEGRKCFADMTKLSV+PE+KHYACMVDMLGRAG L EAF +IK++P  
Sbjct: 442 SILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSR 501

Query: 480 PNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLR 534
           P+D VWGALLLACRIH     GEIAAN LFQLEPEHTGY+VLMSNIYAASNKW+EV  +R
Sbjct: 502 PSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVR 561

Query: 535 EDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLS 594
           ++MK++GLKKPAAFSVIE+G ++ GFHTAD+ +PY++EVY+KVES+A+E+KM GY+PDLS
Sbjct: 562 QNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLS 621

Query: 595 CALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIY 654
           C LHDVE ED+EH+LNYHSEKLAVAFGIM +     +QVTKNLRVC+DCH AF+FIS IY
Sbjct: 622 CVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIY 681

Query: 655 RRKIIVRDANRFHHFEGGTCSCNDYW 680
            RKIIVRD NRFHHF+GG CSC DYW
Sbjct: 682 GRKIIVRDGNRFHHFQGGRCSCGDYW 707

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/686 (62%), Positives = 526/686 (76%), Gaps = 42/686 (6%)

Query: 6   PSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLF 65
           PS   FYD LL+ C  L +L+ IHSSL+T G +    H  A++II Y+  G+ ++AR+LF
Sbjct: 22  PSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLF 81

Query: 66  NSIH------NDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA 119
           +  H           SFL NTM+RAYAN G   E ++LY  M+R G+  N++T+PFVLK 
Sbjct: 82  DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141

Query: 120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSW 179
           CAS    + G+VVHG ++RTGF SD +V+AALVDMYAKCG+  D  +VFD M +RD+V W
Sbjct: 142 CASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201

Query: 180 TVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC 239
           T MIT YEQAE+P +AL+LF+K Q+EG L D +T +SVASAVGQLGD   A         
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA--------- 252

Query: 240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLL 299
                                 + +ARLVFD ME+R+ ISWNSML+GY QNG+ ++AL L
Sbjct: 253 ----------------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 290

Query: 300 FDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359
           F++MQ S+C PNPVTALI+VSAC+YLGS+ LGRK H ++I+S M ID TLRNA+MDMY K
Sbjct: 291 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 350

Query: 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT 419
           CGDLDTA  MFN+    ER+VSSWNVLI+GYG+HGHG++ALE FS+M  EGV+P+ ITFT
Sbjct: 351 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 410

Query: 420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP 479
           SILSACSHAGLIDEGRKCFADMTKLSV+PE+KHYACMVDMLGRAG L EAF +IK++P  
Sbjct: 411 SILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSR 470

Query: 480 PNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLR 534
           P+D VWGALLLACRIH     GEIAAN LFQLEPEHTGY+VLMSNIYAASNKW+EV  +R
Sbjct: 471 PSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVR 530

Query: 535 EDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLS 594
           ++MK++GLKKPAAFSVIE+G ++ GFHTAD+ +PY++EVY+KVES+A+E+KM GY+PDLS
Sbjct: 531 QNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLS 590

Query: 595 CALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIY 654
           C LHDVE ED+EH+LNYHSEKLAVAFGIM +     +QVTKNLRVC+DCH AF+FIS IY
Sbjct: 591 CVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIY 650

Query: 655 RRKIIVRDANRFHHFEGGTCSCNDYW 680
            RKIIVRD NRFHHF+GG CSC DYW
Sbjct: 651 GRKIIVRDGNRFHHFQGGRCSCGDYW 676

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa] gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/533 (74%), Positives = 463/533 (86%), Gaps = 6/533 (1%)

Query: 154 MYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE-GLLSDSV 212
           MYAKCG   D  K+FDEMS +DLV WT MITAYEQAEKPEEALILF+K QQE GLL+DS+
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 213 TIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMM 272
            +VSVASAVGQLGDV  A  VHGYA   + +E+LC+ NSI+AM+ +CGN EKARLVFDMM
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 273 EKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR 332
            +RD+ISWNSML+GY QNGQA+EALLLFDEM++SDC+P PVTALI+VSAC YLG R LGR
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 333 KFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM 392
           KFH +I++S M+ID  L NA+MDMYAKCGDL+ A ++FN I P+ERN  SWNVLI+GYGM
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 393 HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKH 452
           HGHG++ALE FS+M EEGV+P+H TFTSILSACSHAGLIDEGRKCFA+M +LSV  E KH
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKH 300

Query: 453 YACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI-----AANYLFQLE 507
           +AC+VDMLGRAG L EAFD+IK+MP PP+D VWGALLLAC+IHG +     AA+ L QLE
Sbjct: 301 HACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLE 360

Query: 508 PEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVN 567
           P HTGY+VLMSNIYAASNKW+EV KLR+DMKNKGLKKPAAFS+IEYGKDI GFHTAD+ N
Sbjct: 361 PNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQEN 420

Query: 568 PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTP 627
           PY  EVYKK+ES+A+E+KMAGY+PDLSCALHDVE+ED+E MLNYHSEKLAVAFG++ + P
Sbjct: 421 PYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDP 480

Query: 628 EAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
             V++VTKNLRVCNDCHSAF++IS+IY+RKIIVRDANRFHHF+GGTCSC DYW
Sbjct: 481 GMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/431 (68%), Positives = 355/431 (82%), Gaps = 2/431 (0%)

Query: 7   STEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFN 66
           STE  YD L+K C+ LA L+QIHS+LTT+ LI ++ HL A+IIIKY  +G  N ARSLF+
Sbjct: 35  STEIVYDNLVKFCDGLAVLKQIHSALTTNSLITKSPHLAAQIIIKYAKFGYLNCARSLFD 94

Query: 67  --SIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS 124
             +I  D   SFLWNTMIRAYAN G C ETLELY  MRR+G+SSN+YTFPF+ KACASNS
Sbjct: 95  GINIRGDNRSSFLWNTMIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNS 154

Query: 125 LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMIT 184
           L+L+GKV HGD ++  F SD YV+AALVDMYAKCGQ  DG K+FDEM V+DLV WT MIT
Sbjct: 155 LLLQGKVAHGDAVKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVCWTAMIT 214

Query: 185 AYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE 244
           AYEQ EKP+EALIL +K QQ GL  D VT+VSVASA+GQL D   AQ+VH YAI  +FL+
Sbjct: 215 AYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASAIGQLWDAKWAQSVHAYAIRRSFLK 274

Query: 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQ 304
           ++ + NSI+AM+ +CGN+EK+ L+FDMM++R++ISWNSML+GY QNGQASEAL LFD+M+
Sbjct: 275 EIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEALFLFDKMR 334

Query: 305 NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLD 364
           +S C+PN VTALI+V+AC YLGSR LG KFH +I++S MKID  LRNA+MDMYAKCGDL 
Sbjct: 335 DSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKIDMNLRNALMDMYAKCGDLK 394

Query: 365 TAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSA 424
           TA  MFND+HPSERNVSSWNVLI+GYGMHGHG++AL  +S+M EE V+P+HITFTSILSA
Sbjct: 395 TAVEMFNDVHPSERNVSSWNVLISGYGMHGHGKEALRLYSRMQEESVEPNHITFTSILSA 454

Query: 425 CSHAGLIDEGR 435
           CSHAGLIDEGR
Sbjct: 455 CSHAGLIDEGR 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/690 (42%), Positives = 437/690 (63%), Gaps = 15/690 (2%)

Query: 1   MRRLGPSTEGF-YDQLLKSCNFLASL---RQIHSSLTTSGLINQALHLGAKIIIKYTTYG 56
           M+R G + +   +  ++K+C   + L   R++H  +   G  +  + +G  +   YT  G
Sbjct: 111 MQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVI-VGTALASMYTKCG 169

Query: 57  EPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV 116
               AR +F+ +      S  WN +I  Y+ NG   E L L+S M+ +GI  NS T   V
Sbjct: 170 SLENARQVFDRMPKRDVVS--WNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSV 227

Query: 117 LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDL 176
           +  CA    + +GK +H   IR+G  SD  V   LV+MYAKCG  +   K+F+ M +RD+
Sbjct: 228 MPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDV 287

Query: 177 VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGY 236
            SW  +I  Y    +  EAL  F + Q  G+  +S+T+VSV  A   L  + + Q +HGY
Sbjct: 288 ASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGY 347

Query: 237 AICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEA 296
           AI + F  +  + N++V MYA+CGNV  A  +F+ M K+++++WN++++GY Q+G   EA
Sbjct: 348 AIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEA 407

Query: 297 LLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356
           L LF EMQ    KP+    + ++ AC +  + + G++ HGY I S  + +  +   ++D+
Sbjct: 408 LALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDI 467

Query: 357 YAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI 416
           YAKCG+++TA+ +F  +   E++V SW  +I  YG+HGHG  AL  FS+M E G K DHI
Sbjct: 468 YAKCGNVNTAQKLFERM--PEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHI 525

Query: 417 TFTSILSACSHAGLIDEGRKCFADM-TKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475
            FT+IL+ACSHAGL+D+G + F  M +   + P+++HYAC+VD+LGRAG L EA  +IK 
Sbjct: 526 AFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKN 585

Query: 476 MPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV 530
           M L P+ +VWGALL ACRIH     GE AA +LF+L+P++ GY+VL+SNIYA + +W +V
Sbjct: 586 MSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDV 645

Query: 531 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYM 590
            KLR+ MK KG+KK    SV+   +D+Q F   DR +P  +++Y  +E +  +++ AGY+
Sbjct: 646 AKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYV 705

Query: 591 PDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFI 650
           P+ + AL DVE+E +E++L+ HSEKLA++FGI+N +P   +++ KNLRVC+DCH+A +FI
Sbjct: 706 PNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFI 765

Query: 651 SYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
           S I  R+IIVRDANRFHH + G CSC DYW
Sbjct: 766 SKIVGREIIVRDANRFHHVKNGFCSCGDYW 795

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/678 (42%), Positives = 431/678 (63%), Gaps = 16/678 (2%)

Query: 12  YDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
           +  +LK+C  L   R+IH      G     + + A +I  Y+ +G    ARSLF+ +   
Sbjct: 221 FPPVLKACGTLVDGRKIHCWAFKLGF-QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 279

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
              S  WN MI     NG+  + L++   MR  GI  N  T   +L  C     I    +
Sbjct: 280 DMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAML 337

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +H  +I+ G   D +V  AL++MYAK G  +D  K F +M + D+VSW  +I AYEQ + 
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL-EDLCIQN 250
           P  A   F K Q  G   D +T+VS+AS V Q  D   +++VHG+ +   +L ED+ I N
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457

Query: 251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK- 309
           ++V MYA+ G ++ A  VF+++  +D+ISWN+++TGY QNG ASEA+ ++  M+  +CK 
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMME--ECKE 515

Query: 310 --PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE 367
             PN  T + ++ A  ++G+ Q G K HG +I +N+ +D  +   ++D+Y KCG L  A 
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 368 NMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH 427
           ++F  + P E +V+ WN +I+ +G+HGH  K L+ F +ML+EGVKPDH+TF S+LSACSH
Sbjct: 576 SLFYQV-PQESSVT-WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 428 AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGA 487
           +G ++EG+ CF  M +  +KP +KHY CMVD+LGRAG L  A+D IK MPL P+ S+WGA
Sbjct: 634 SGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGA 693

Query: 488 LLLACRIHGEI-----AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542
           LL ACRIHG I     A++ LF+++ ++ GY+VL+SNIYA   KW  V K+R   + +GL
Sbjct: 694 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 753

Query: 543 KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVED 602
           KK   +S IE  + +  F+T ++ +P  KE+Y+++  +  ++K  GY+PD S  L DVE+
Sbjct: 754 KKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEE 813

Query: 603 EDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRD 662
           +++EH+L  HSE+LA+AFGI++  P++ +++ KNLRVC DCH+A +FIS I +R+I+VRD
Sbjct: 814 DEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRD 873

Query: 663 ANRFHHFEGGTCSCNDYW 680
           +NRFHHF+ G CSC DYW
Sbjct: 874 SNRFHHFKDGICSCGDYW 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/678 (42%), Positives = 430/678 (63%), Gaps = 16/678 (2%)

Query: 12  YDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
           +  +LK+C  L   R+IH      G     + + A +I  Y+ +G    ARSLF+ +   
Sbjct: 221 FPPVLKACGTLVDGRRIHCWAFKLGF-QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 279

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
              S  WN MI     NG+  + L++   MR  GI  N  T   +L  C     I    +
Sbjct: 280 DMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAML 337

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +H  +I+ G   D +V  AL++MYAK G  +D  K F +M + D+VSW  +I AYEQ + 
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL-EDLCIQN 250
           P  A   F K Q  G   D +T+VS+AS V Q  D   +++VHG+ +   +L ED+ I N
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457

Query: 251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK- 309
           ++V MYA+ G ++ A  VF+++  +D+ISWN+++TGY QNG ASEA+ ++  M+  +CK 
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMME--ECKE 515

Query: 310 --PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE 367
             PN  T + ++ A  ++G+ Q G + HG +I +N+ +D  +   ++D+Y KCG L  A 
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 368 NMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH 427
           ++F  + P E +V+ WN +I+ +G+HGH  K L+ F +ML+EGVKPDH+TF S+LSACSH
Sbjct: 576 SLFYQV-PQESSVT-WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 428 AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGA 487
           +G ++EG+ CF  M +  +KP +KHY CMVD+LGRAG L  A+  IK MPL P+ S+WGA
Sbjct: 634 SGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGA 693

Query: 488 LLLACRIHGEI-----AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542
           LL ACRIHG I     A++ LF+++ ++ GY+VL+SNIYA   KW  V K+R   + +GL
Sbjct: 694 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 753

Query: 543 KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVED 602
           KK   +S IE  + +  F+T ++ +P  KE+Y+++  +  ++K  GY+PD S  L DVE+
Sbjct: 754 KKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEE 813

Query: 603 EDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRD 662
           +++EH+L  HSE+LA+AFGI++  P++ +++ KNLRVC DCH+A +FIS I +R+I+VRD
Sbjct: 814 DEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRD 873

Query: 663 ANRFHHFEGGTCSCNDYW 680
           +NRFHHF+ G CSC DYW
Sbjct: 874 SNRFHHFKDGICSCGDYW 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/667 (42%), Positives = 430/667 (64%), Gaps = 20/667 (2%)

Query: 29  HSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANN 88
           H++   SG  ++   + A  +++      PN   +LFN  + DK+  F WN++I   A +
Sbjct: 74  HTAFQFSGF-SKRRSICAGAVLRRRYSNNPNLT-TLFNK-YVDKTNVFSWNSVIAELARS 130

Query: 89  GHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQ 148
           G  VE L  +S+MR+  +  N  TFP  +K+C++   +  G+  H   +  GF  D +V 
Sbjct: 131 GDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVS 190

Query: 149 AALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF-----QKTQ 203
           +ALVDMY+KCG+  D   +FDE+S R++VSWT MIT Y Q +    AL+LF     +++ 
Sbjct: 191 SALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESG 250

Query: 204 QEG---LLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG 260
            EG   +  D + +VSV SA  ++ +    + VHG+ I   F  DL ++N+++  YA+CG
Sbjct: 251 SEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCG 310

Query: 261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEM-QNSDCKPNPVTALILV 319
            +  +R VFD M +RD+ISWNS++  Y QNG ++E++ +F  M ++ +   N VT   ++
Sbjct: 311 ELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVL 370

Query: 320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN 379
            AC + GS++LG+  H  +I   ++ +  +  +++DMY KCG ++ A   F+ +   E+N
Sbjct: 371 LACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR--EKN 428

Query: 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA 439
           V SW+ ++AGYGMHGH ++ALE F +M   GVKP++ITF S+L+ACSHAGL++EG   F 
Sbjct: 429 VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK 488

Query: 440 DMT-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH--- 495
            M+ +  V+P V+HY CMVD+LGRAG L EAFD+IK M L P+  VWGALL ACR+H   
Sbjct: 489 AMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNV 548

Query: 496 --GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEY 553
             GEI+A  LF+L+P++ GY+VL+SNIYA + +W +V ++R  MKN GL KP  FS+++ 
Sbjct: 549 DLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 608

Query: 554 GKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHS 613
              +  F   DR +P  +++Y+ +E ++++++  GY+PD++  LHDV  E++E +L  HS
Sbjct: 609 KGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHS 668

Query: 614 EKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGT 673
           EKLAVAFGIMN  P   + + KNLRVC DCH+A +FIS I  R+I+VRD+ RFHHF  G 
Sbjct: 669 EKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGL 728

Query: 674 CSCNDYW 680
           CSC DYW
Sbjct: 729 CSCGDYW 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/676 (42%), Positives = 431/676 (63%), Gaps = 12/676 (1%)

Query: 12  YDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
           +  +LK+C  L   R+IH  +   G     + + A +I  Y+ +G    ARSLF+ +   
Sbjct: 178 FPPVLKACQTLVDGRKIHCWVFKLGF-QWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR 236

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
              S  WN MI     NG+  + L++   MR  GI+ +S T   +L  CA    I    +
Sbjct: 237 DMGS--WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATL 294

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +H  +I+ G   + +V  AL++MYAK G   D  KVF +M +RD+VSW  +I AYEQ + 
Sbjct: 295 IHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD 354

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL-EDLCIQN 250
           P  A   F K Q  GL  D +T+VS+AS   Q  D   +++VHG+ +   +L E + I N
Sbjct: 355 PVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGN 414

Query: 251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN-SDCK 309
           +++ MYA+ G ++ A  VF+++  +D++SWN++++GY QNG ASEA+ ++  M+   + K
Sbjct: 415 AVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIK 474

Query: 310 PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENM 369
            N  T + +++A  ++G+ Q G + HG++I +N+ +D  +   ++D+Y KCG L  A  +
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCL 534

Query: 370 FNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429
           F  + P E +V  WN +I+ +G+HGHG KAL+ F +M +EGVKPDH+TF S+LSACSH+G
Sbjct: 535 FYQV-PRESSVP-WNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSG 592

Query: 430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALL 489
           L+DEG+  F  M +  +KP +KHY CMVD+LGRAG L  A+D IK MPL P+ S+WGALL
Sbjct: 593 LVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALL 652

Query: 490 LACRIHGEI-----AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKK 544
            ACRIHG I     A++ LF+++ E+ GY+VL+SNIYA   KW  V K+R   + +GLKK
Sbjct: 653 GACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 712

Query: 545 PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDED 604
              +S IE  + +  F+T ++ +P  KE+Y ++  +  ++K  GY+PD S  L DVE+++
Sbjct: 713 TPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDE 772

Query: 605 REHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDAN 664
           +EH+L  HSE+LA+AFGI++  P++ +++ KNLRVC DCH+A +FIS I  R+I+VRD+ 
Sbjct: 773 KEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSK 832

Query: 665 RFHHFEGGTCSCNDYW 680
           RFHHF+ G CSC DYW
Sbjct: 833 RFHHFKNGICSCGDYW 848

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/705 (39%), Positives = 434/705 (61%), Gaps = 43/705 (6%)

Query: 15  LLKSCNFLASLRQIHSSLTTSGLINQALHLGAKI-IIKYTTYGEPNTARSLFNSIHNDKS 73
           LL +C    +L+QIHS +  +GL N    L   I     + +G  + A  LF SI  ++ 
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI--EQP 95

Query: 74  YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH 133
             F+WNTMIR  + +   V  ++ Y  M   G+  NSYTFPF+LK+CA      EGK +H
Sbjct: 96  NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155

Query: 134 GDIIRTGFLSDSYVQAALVDMYAKCGQT-------------------------------D 162
           G +++ G  SD +V  +L++MYA+ G+                                D
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLD 215

Query: 163 DGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG 222
           D  ++F+E+ VRD VSW  MI  Y Q+ + EEAL  FQ+ ++  +  +  T+V+V SA  
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 223 QLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNS 282
           Q G +     V  +   +    +L + N+++ MY++CG+++KAR +F+ + ++D+ISWN 
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 283 MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN 342
           M+ GY       EAL LF +MQ S+ +PN VT + ++ AC YLG+  LG+  H YI    
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKF 395

Query: 343 MKI-DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALE 401
           + + + +L  +++DMYAKCG+++ A+ +F  + P  +++ SWN +I+G  MHGH   ALE
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKP--KSLGSWNAMISGLAMHGHANMALE 453

Query: 402 FFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDML 460
            F QM +EG +PD ITF  +LSACSHAGL++ GR+CF+ M +   + P+++HY CM+D+L
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLL 513

Query: 461 GRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG-----EIAANYLFQLEPEHTGYFV 515
           GRAG   EA  ++K M + P+ ++WG+LL ACR+HG     E AA +LF+LEPE+ G +V
Sbjct: 514 GRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYV 573

Query: 516 LMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYK 575
           L+SNIYA + +W +V ++R  + +KG+KK    S IE    +  F   D+V+   +++YK
Sbjct: 574 LLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYK 633

Query: 576 KVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTK 635
            ++ +   ++ AG++PD S  L+D+++E +E  L++HSEKLA+AFG+++  PE  +++ K
Sbjct: 634 MLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVK 693

Query: 636 NLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
           NLRVC +CHSA + IS I+ R+II RD NRFHHF+ G+CSC DYW
Sbjct: 694 NLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	680
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.970	0.801	0.418	2.8e-146
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.972	0.817	0.391	5.6e-132
TAIR|locus:4010713776	659	AT3G26782 [Arabidopsis thalian	0.938	0.968	0.382	5.9e-128
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.951	0.816	0.380	8.7e-127
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.969	0.756	0.379	1.5e-124
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.955	0.610	0.367	7.2e-123
TAIR|locus:2178188	995	MEF7 "AT5G09950" [Arabidopsis	0.955	0.653	0.378	7.4e-121
TAIR|locus:2032840	937	AT1G16480 "AT1G16480" [Arabido	0.951	0.690	0.360	3.2e-120
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.958	0.658	0.368	8.8e-118
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.873	0.801	0.382	3e-117

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 283/677 (41%), Positives = 425/677 (62%)

Query:    12 YDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
             +  +LK+C  +    +IH      G +   +++ A +I  Y+ Y     AR LF+ +   
Sbjct:   156 FPSVLKACRTVIDGNKIHCLALKFGFMWD-VYVAASLIHLYSRYKAVGNARILFDEMPVR 214

Query:    72 KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
                S  WN MI  Y  +G+  E L L + +R    + +S T   +L AC        G  
Sbjct:   215 DMGS--WNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVT 268

Query:   132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
             +H   I+ G  S+ +V   L+D+YA+ G+  D  KVFD M VRDL+SW  +I AYE  E+
Sbjct:   269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query:   192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNA-FLEDLCIQN 250
             P  A+ LFQ+ +   +  D +T++S+AS + QLGD+   ++V G+ +    FLED+ I N
Sbjct:   329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 388

Query:   251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS-DCK 309
             ++V MYA+ G V+ AR VF+ +   D+ISWN++++GY QNG ASEA+ +++ M+   +  
Sbjct:   389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 448

Query:   310 PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENM 369
              N  T + ++ AC+  G+ + G K HG ++ + + +D  +  ++ DMY KCG L+ A ++
Sbjct:   449 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508

Query:   370 FNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429
             F  I P   +V  WN LIA +G HGHG KA+  F +ML+EGVKPDHITF ++LSACSH+G
Sbjct:   509 FYQI-PRVNSVP-WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566

Query:   430 LIDEGRKCFADM-TKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGAL 488
             L+DEG+ CF  M T   + P +KHY CMVDM GRAG L  A   IK M L P+ S+WGAL
Sbjct:   567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626

Query:   489 LLACRIHG-----EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK 543
             L ACR+HG     +IA+ +LF++EPEH GY VL+SN+YA++ KW  V ++R     KGL+
Sbjct:   627 LSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLR 686

Query:   544 KPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE 603
             K   +S +E    ++ F+T ++ +P ++E+Y+++ ++  ++KM GY+PD    L DVED+
Sbjct:   687 KTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDD 746

Query:   604 DREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDA 663
             ++EH+L  HSE+LA+AF ++    +  +++ KNLRVC DCHS  +FIS I  R+IIVRD+
Sbjct:   747 EKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDS 806

Query:   664 NRFHHFEGGTCSCNDYW 680
             NRFHHF+ G CSC DYW
Sbjct:   807 NRFHHFKNGVCSCGDYW 823

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 266/680 (39%), Positives = 410/680 (60%)

Query:    12 YDQLLKSCNFLASLR---QIHSSLTTSGLINQALHLGAKIIIK--YTTYGEPNTARSLFN 66
             +  LLK C   A LR   +IH  L  SG    +L L A   ++  Y    + N AR +F+
Sbjct:   138 FTYLLKVCGDEAELRVGKEIHGLLVKSGF---SLDLFAMTGLENMYAKCRQVNEARKVFD 194

Query:    67 SIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI 126
              +      S  WNT++  Y+ NG     LE+  +M    +  +  T   VL A ++  LI
Sbjct:   195 RMPERDLVS--WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query:   127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAY 186
               GK +HG  +R+GF S   +  ALVDMYAKCG  +   ++FD M  R++VSW  MI AY
Sbjct:   253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query:   187 EQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDL 246
              Q E P+EA+++FQK   EG+    V+++    A   LGD+ + + +H  ++      ++
Sbjct:   313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query:   247 CIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS 306
              + NS+++MY +C  V+ A  +F  ++ R L+SWN+M+ G+ QNG+  +AL  F +M++ 
Sbjct:   373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432

Query:   307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA 366
               KP+  T + +++A   L      +  HG ++ S +  +  +  A++DMYAKCG +  A
Sbjct:   433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492

Query:   367 ENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426
               +F+ +  SER+V++WN +I GYG HG G+ ALE F +M +  +KP+ +TF S++SACS
Sbjct:   493 RLIFDMM--SERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550

Query:   427 HAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVW 485
             H+GL++ G KCF  M +  S++  + HY  MVD+LGRAG L EA+D I QMP+ P  +V+
Sbjct:   551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query:   486 GALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540
             GA+L AC+IH      E AA  LF+L P+  GY VL++NIY A++ W +VG++R  M  +
Sbjct:   611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query:   541 GLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDV 600
             GL+K    S++E   ++  F +    +P  K++Y  +E +   IK AGY+PD +  L  V
Sbjct:   671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GV 729

Query:   601 EDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIV 660
             E++ +E +L+ HSEKLA++FG++N T    + V KNLRVC DCH+A ++IS +  R+I+V
Sbjct:   730 ENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVV 789

Query:   661 RDANRFHHFEGGTCSCNDYW 680
             RD  RFHHF+ G CSC DYW
Sbjct:   790 RDMQRFHHFKNGACSCGDYW 809

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 251/656 (38%), Positives = 398/656 (60%)

Query:    40 QALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYS 99
             +AL      ++    + E     +LFN  + DK+  F WN++I   A +G   E L  +S
Sbjct:     7 KALFCSVSRLLHTERHTERQNLTTLFNR-YVDKTDVFSWNSVIADLARSGDSAEALLAFS 65

Query:   100 TMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG 159
             +MR+  +     +FP  +KAC+S   I  GK  H      G+ SD +V +AL+ MY+ CG
Sbjct:    66 SMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG 125

Query:   160 QTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF------QKTQQEGLLSDSVT 213
             + +D  KVFDE+  R++VSWT MI  Y+      +A+ LF      +    + +  DS+ 
Sbjct:   126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185

Query:   214 IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGN--VEKARLVFDM 271
             +VSV SA  ++      +++H + I   F   + + N+++  YA+ G   V  AR +FD 
Sbjct:   186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query:   272 MEKRDLISWNSMLTGYIQNGQASEALLLFDEM-QNSDCKPNPVTALILVSACTYLGSRQL 330
             +  +D +S+NS+++ Y Q+G ++EA  +F  + +N     N +T   ++ A ++ G+ ++
Sbjct:   246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query:   331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390
             G+  H  +I   ++ D  +  +++DMY KCG ++TA   F+ +    +NV SW  +IAGY
Sbjct:   306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM--KNKNVRSWTAMIAGY 363

Query:   391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT-KLSVKPE 449
             GMHGH  KALE F  M++ GV+P++ITF S+L+ACSHAGL  EG + F  M  +  V+P 
Sbjct:   364 GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPG 423

Query:   450 VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLF 504
             ++HY CMVD+LGRAG L +A+D+I++M + P+  +W +LL ACRIH      EI+   LF
Sbjct:   424 LEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLF 483

Query:   505 QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTAD 564
             +L+  + GY++L+S+IYA + +W++V ++R  MKN+GL KP  FS++E   ++  F   D
Sbjct:   484 ELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGD 543

Query:   565 RVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMN 624
               +P  +++Y+ +  +  ++  AGY+ + S   HDV++E++E  L  HSEKLA+AFGIMN
Sbjct:   544 EEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMN 603

Query:   625 LTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680
               P + V V KNLRVC+DCH+  + IS I  R+ +VRDA RFHHF+ G CSC DYW
Sbjct:   604 TVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 252/662 (38%), Positives = 386/662 (58%)

Query:    26 RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
             R IH      G  ++ L LG+ I+  Y  +     AR +F+ +  +K  + LWNTMI  Y
Sbjct:   139 RVIHGQAVVDGCDSELL-LGSNIVKMYFKFWRVEDARKVFDRMP-EKD-TILWNTMISGY 195

Query:    86 ANNGHCVETLELYSTM-RRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD 144
               N   VE+++++  +   S    ++ T   +L A A    +  G  +H    +TG  S 
Sbjct:   196 RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSH 255

Query:   145 SYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQ 204
              YV    + +Y+KCG+   G  +F E    D+V++  MI  Y    + E +L LF++   
Sbjct:   256 DYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELML 315

Query:   205 EGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264
              G    S T+VS+    G L   +   A+HGY + + FL    +  ++  +Y++   +E 
Sbjct:   316 SGARLRSSTLVSLVPVSGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIES 372

Query:   265 ARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY 324
             AR +FD   ++ L SWN+M++GY QNG   +A+ LF EMQ S+  PNPVT   ++SAC  
Sbjct:   373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQ 432

Query:   325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWN 384
             LG+  LG+  H  + +++ +    +  A++ MYAKCG +  A  +F D+  +++N  +WN
Sbjct:   433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF-DLM-TKKNEVTWN 490

Query:   385 VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT-K 443
              +I+GYG+HG G++AL  F +ML  G+ P  +TF  +L ACSHAGL+ EG + F  M  +
Sbjct:   491 TMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query:   444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI----- 498
                +P VKHYACMVD+LGRAG L  A   I+ M + P  SVW  LL ACRIH +      
Sbjct:   551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610

Query:   499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQ 558
              +  LF+L+P++ GY VL+SNI++A   + +   +R+  K + L K   +++IE G+   
Sbjct:   611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query:   559 GFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAV 618
              F + D+ +P  KE+Y+K+E +  +++ AGY P+   ALHDVE+E+RE M+  HSE+LA+
Sbjct:   671 VFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAI 730

Query:   619 AFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND 678
             AFG++   P   +++ KNLRVC DCH+  + IS I  R I+VRDANRFHHF+ G CSC D
Sbjct:   731 AFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790

Query:   679 YW 680
             YW
Sbjct:   791 YW 792

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 256/674 (37%), Positives = 400/674 (59%)

Query:    17 KSCNFLASLR---QIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS 73
             KS + L S+    Q+H  +  SG   +   +G  ++  Y      ++AR +F+ +     
Sbjct:   203 KSFSSLRSVHGGEQLHGFILKSGF-GERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query:    74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH 133
              S  WN++I  Y +NG   + L ++  M  SGI  +  T   V   CA + LI  G+ VH
Sbjct:   262 IS--WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query:   134 GDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPE 193
                ++  F  +      L+DMY+KCG  D    VF EMS R +VS+T MI  Y +     
Sbjct:   320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAG 379

Query:   194 EALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV 253
             EA+ LF++ ++EG+  D  T+ +V +   +   + + + VH +   N    D+ + N+++
Sbjct:   380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALM 439

Query:   254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEM-QNSDCKPNP 312
              MYA+CG++++A LVF  M  +D+ISWN+++ GY +N  A+EAL LF+ + +     P+ 
Sbjct:   440 DMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 499

Query:   313 VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFND 372
              T   ++ AC  L +   GR+ HGYI+ +    D  + N+++DMYAKCG L  A  +F+D
Sbjct:   500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 559

Query:   373 IHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLID 432
             I  + +++ SW V+IAGYGMHG G++A+  F+QM + G++ D I+F S+L ACSH+GL+D
Sbjct:   560 I--ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617

Query:   433 EGRKCFADMT-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLA 491
             EG + F  M  +  ++P V+HYAC+VDML R G L +A+  I+ MP+PP+ ++WGALL  
Sbjct:   618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677

Query:   492 CRIHGEI-----AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPA 546
             CRIH ++      A  +F+LEPE+TGY+VLM+NIYA + KW +V +LR+ +  +GL+K  
Sbjct:   678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737

Query:   547 AFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDRE 606
               S IE    +  F   D  NP  + +   +  +   +   GY P    AL D E+ ++E
Sbjct:   738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query:   607 HMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRF 666
               L  HSEKLA+A GI++     +++VTKNLRVC DCH   +F+S + RR+I++RD+NRF
Sbjct:   798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query:   667 HHFEGGTCSCNDYW 680
             H F+ G CSC  +W
Sbjct:   858 HQFKDGHCSCRGFW 871

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 243/661 (36%), Positives = 372/661 (56%)

Query:    26 RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
             +Q+H+  T  G  +     GA + + Y    +  TA   F  +  +     LWN M+ AY
Sbjct:   409 QQLHAYTTKLGFASNNKIEGALLNL-YAKCADIETALDYF--LETEVENVVLWNVMLVAY 465

Query:    86 ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDS 145
                     +  ++  M+   I  N YT+P +LK C     +  G+ +H  II+T F  ++
Sbjct:   466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query:   146 YVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE 205
             YV + L+DMYAK G+ D    +    + +D+VSWT MI  Y Q    ++AL  F++    
Sbjct:   526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query:   206 GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKA 265
             G+ SD V + +  SA   L  + + Q +H  A  + F  DL  QN++V +Y+RCG +E++
Sbjct:   586 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query:   266 RLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL 325
              L F+  E  D I+WN++++G+ Q+G   EAL +F  M       N  T    V A +  
Sbjct:   646 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705

Query:   326 GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNV 385
              + + G++ H  I  +    +  + NA++ MYAKCG +  AE  F ++  S +N  SWN 
Sbjct:   706 ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEV--STKNEVSWNA 763

Query:   386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADM-TKL 444
             +I  Y  HG G +AL+ F QM+   V+P+H+T   +LSACSH GL+D+G   F  M ++ 
Sbjct:   764 IINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEY 823

Query:   445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-----GEIA 499
              + P+ +HY C+VDML RAG L  A + I++MP+ P+  VW  LL AC +H     GE A
Sbjct:   824 GLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFA 883

Query:   500 ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQG 559
             A++L +LEPE +  +VL+SN+YA S KW      R+ MK KG+KK    S IE    I  
Sbjct:   884 AHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943

Query:   560 FHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVA 619
             F+  D+ +P   E+++  + +       GY+ D    L++++ E ++ ++  HSEKLA++
Sbjct:   944 FYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAIS 1003

Query:   620 FGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDY 679
             FG+++L     + V KNLRVCNDCH+  +F+S +  R+IIVRDA RFHHFEGG CSC DY
Sbjct:  1004 FGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDY 1063

Query:   680 W 680
             W
Sbjct:  1064 W 1064

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 253/668 (37%), Positives = 398/668 (59%)

Query:    26 RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
             R++H  + T+GL++  + +G  ++  Y   G    AR +F  +  DK  S  WN+MI   
Sbjct:   333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM-TDKD-SVSWNSMITGL 390

Query:    86 ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDS 145
               NG  +E +E Y +MRR  I   S+T    L +CAS      G+ +HG+ ++ G   + 
Sbjct:   391 DQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNV 450

Query:   146 YVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKP-EEALILFQKTQQ 204
              V  AL+ +YA+ G  ++  K+F  M   D VSW  +I A  ++E+   EA++ F   Q+
Sbjct:   451 SVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQR 510

Query:   205 EGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264
              G   + +T  SV SAV  L      + +HG A+ N   ++   +N+++A Y +CG ++ 
Sbjct:   511 AGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDG 570

Query:   265 ARLVFDMM-EKRDLISWNSMLTGYIQNGQASEAL-LLFDEMQNSDCKPNPVTALILVSAC 322
                +F  M E+RD ++WNSM++GYI N   ++AL L++  +Q      + + A +L SA 
Sbjct:   571 CEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVL-SAF 629

Query:   323 TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSS 382
               + + + G + H   + + ++ D  + +A++DMY+KCG LD A   FN + P  RN  S
Sbjct:   630 ASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTM-PV-RNSYS 687

Query:   383 WNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPDHITFTSILSACSHAGLIDEGRKCFADM 441
             WN +I+GY  HG G +AL+ F  M  +G   PDH+TF  +LSACSHAGL++EG K F  M
Sbjct:   688 WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESM 747

Query:   442 T-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC-RIHG--- 496
             +    + P ++H++CM D+LGRAG L +  D I++MP+ PN  +W  +L AC R +G   
Sbjct:   748 SDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKA 807

Query:   497 EI---AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEY 553
             E+   AA  LFQLEPE+   +VL+ N+YAA  +W ++ K R+ MK+  +KK A +S +  
Sbjct:   808 ELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 867

Query:   554 GKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHS 613
                +  F   D+ +P    +YKK++ +  +++ AGY+P    AL+D+E E++E +L+YHS
Sbjct:   868 KDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHS 927

Query:   614 EKLAVAFGIMNLTPEAV-VQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGG 672
             EKLAVAF +       + +++ KNLRVC DCHSAF++IS I  R+II+RD+NRFHHF+ G
Sbjct:   928 EKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDG 987

Query:   673 TCSCNDYW 680
              CSC+D+W
Sbjct:   988 ACSCSDFW 995

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 240/665 (36%), Positives = 389/665 (58%)

Query:    26 RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY 85
             R IH  +   G  +  + +   ++  Y   G    A  +F  +      S  WN+++ ++
Sbjct:   281 RGIHGLVVKMGF-DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS--WNSLMASF 337

Query:    86 ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDS 145
              N+G  ++ L L  +M  SG S N  TF   L AC +     +G+++HG ++ +G   + 
Sbjct:   338 VNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQ 397

Query:   146 YVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE 205
              +  ALV MY K G+  +  +V  +M  RD+V+W  +I  Y + E P++AL  FQ  + E
Sbjct:   398 IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVE 457

Query:   206 GLLSDSVTIVSVASAVGQLGDVL-KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264
             G+ S+ +T+VSV SA    GD+L + + +H Y +   F  D  ++NS++ MYA+CG++  
Sbjct:   458 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS 517

Query:   265 ARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY 324
             ++ +F+ ++ R++I+WN+ML     +G   E L L  +M++     +  +    +SA   
Sbjct:   518 SQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAK 577

Query:   325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSW 383
             L   + G++ HG  +    + D+ + NA  DMY+KCG++     M   + PS  R++ SW
Sbjct:   578 LAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM---LPPSVNRSLPSW 634

Query:   384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443
             N+LI+  G HG+  +    F +MLE G+KP H+TF S+L+ACSH GL+D+G   + DM  
Sbjct:   635 NILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGL-AYYDMIA 693

Query:   444 --LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI--- 498
                 ++P ++H  C++D+LGR+G L EA   I +MP+ PND VW +LL +C+IHG +   
Sbjct:   694 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRG 753

Query:   499 --AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKD 556
               AA  L +LEPE    +VL SN++A + +W +V  +R+ M  K +KK  A S ++    
Sbjct:   754 RKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDK 813

Query:   557 IQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKL 616
             +  F   DR +P   E+Y K+E +   IK +GY+ D S AL D ++E +EH L  HSE+L
Sbjct:   814 VSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERL 873

Query:   617 AVAFGIMNLTPE-AVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCS 675
             A+A+ +M+ TPE + V++ KNLR+C+DCHS ++F+S +  R+I++RD  RFHHFE G CS
Sbjct:   874 ALAYALMS-TPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCS 932

Query:   676 CNDYW 680
             C DYW
Sbjct:   933 CKDYW 937

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 246/667 (36%), Positives = 380/667 (56%)

Query:    22 LASLRQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTM 81
             LA  +Q+H      GL +  L +   +I  Y    +   AR++F+++      S  WN++
Sbjct:   331 LALGQQVHCMALKLGL-DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLIS--WNSV 387

Query:    82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS--NSLILEGKVVHGDIIRT 139
             I   A NG  VE + L+  + R G+  + YT   VLKA +S    L L  K VH   I+ 
Sbjct:   388 IAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLS-KQVHVHAIKI 446

Query:   140 GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF 199
               +SDS+V  AL+D Y++     +   +F+  +  DLV+W  M+  Y Q+    + L LF
Sbjct:   447 NNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLF 505

Query:   200 QKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARC 259
                 ++G  SD  T+ +V    G L  + + + VH YAI + +  DL + + I+ MY +C
Sbjct:   506 ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC 565

Query:   260 GNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILV 319
             G++  A+  FD +   D ++W +M++G I+NG+   A  +F +M+     P+  T   L 
Sbjct:   566 GDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLA 625

Query:   320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN 379
              A + L + + GR+ H   +  N   D  +  +++DMYAKCG +D A  +F  I     N
Sbjct:   626 KASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM--N 683

Query:   380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA 439
             +++WN ++ G   HG G++ L+ F QM   G+KPD +TF  +LSACSH+GL+ E  K   
Sbjct:   684 ITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMR 743

Query:   440 DMT-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI 498
              M     +KPE++HY+C+ D LGRAG + +A ++I+ M +  + S++  LL ACR+ G+ 
Sbjct:   744 SMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDT 803

Query:   499 -----AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEY 553
                   A  L +LEP  +  +VL+SN+YAA++KW E+   R  MK   +KK   FS IE 
Sbjct:   804 ETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 863

Query:   554 GKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHS 613
                I  F   DR N   + +Y+KV+ M  +IK  GY+P+    L DVE+E++E  L YHS
Sbjct:   864 KNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHS 923

Query:   614 EKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGT 673
             EKLAVAFG+++  P   ++V KNLRVC DCH+A ++I+ +Y R+I++RDANRFH F+ G 
Sbjct:   924 EKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGI 983

Query:   674 CSCNDYW 680
             CSC DYW
Sbjct:   984 CSCGDYW 990

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 238/622 (38%), Positives = 374/622 (60%)

Query:    73 SYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVV 132
             SY+F +  ++++ A +    E  +++  + + G   + Y    ++     N  + +   V
Sbjct:   134 SYTFPF--VLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query:   133 -----HGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYE 187
                  H D++       SY   AL+  YA  G  ++  K+FDE+ V+D+VSW  MI+ Y 
Sbjct:   192 FDKSPHRDVV-------SYT--ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYA 242

Query:   188 QAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLC 247
             +    +EAL LF+   +  +  D  T+V+V SA  Q G +   + VH +   + F  +L 
Sbjct:   243 ETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLK 302

Query:   248 IQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSD 307
             I N+++ +Y++CG +E A  +F+ +  +D+ISWN+++ GY       EALLLF EM  S 
Sbjct:   303 IVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362

Query:   308 CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMK--IDAT-LRNAVMDMYAKCGDLD 364
               PN VT L ++ AC +LG+  +GR  H YI +  +K   +A+ LR +++DMYAKCGD++
Sbjct:   363 ETPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKRLKGVTNASSLRTSLIDMYAKCGDIE 421

Query:   365 TAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSA 424
              A  +FN I    +++SSWN +I G+ MHG    + + FS+M + G++PD ITF  +LSA
Sbjct:   422 AAHQVFNSI--LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479

Query:   425 CSHAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDS 483
             CSH+G++D GR  F  MT+   + P+++HY CM+D+LG +G   EA +MI  M + P+  
Sbjct:   480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539

Query:   484 VWGALLLACRIHGEIA-----ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK 538
             +W +LL AC++HG +      A  L ++EPE+ G +VL+SNIYA++ +W EV K R  + 
Sbjct:   540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599

Query:   539 NKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALH 598
             +KG+KK    S IE    +  F   D+ +P  +E+Y  +E M V ++ AG++PD S  L 
Sbjct:   600 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659

Query:   599 DVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKI 658
             ++E+E +E  L +HSEKLA+AFG+++  P   + + KNLRVC +CH A + IS IY+R+I
Sbjct:   660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 719

Query:   659 IVRDANRFHHFEGGTCSCNDYW 680
             I RD  RFHHF  G CSCNDYW
Sbjct:   720 IARDRTRFHHFRDGVCSCNDYW 741

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81767	PP348_ARATH	No assigned EC number	0.4165	0.9705	0.8019	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	680
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-175
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-159
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-76
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-65
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-49
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	6e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  520 bits (1342), Expect = e-175
 Identities = 252/673 (37%), Positives = 394/673 (58%), Gaps = 17/673 (2%)

Query: 15  LLKSCNFLASL---RQIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND 71
           +L++C  +  L   R++H+ +   G       + A +I  Y   G+  +AR +F+ +   
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA-LITMYVKCGDVVSARLVFDRMPRR 251

Query: 72  KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131
              S  WN MI  Y  NG C+E LEL+ TMR   +  +  T   V+ AC        G+ 
Sbjct: 252 DCIS--WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309

Query: 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEK 191
           +HG +++TGF  D  V  +L+ MY   G   +  KVF  M  +D VSWT MI+ YE+   
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369

Query: 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNS 251
           P++AL  +   +Q+ +  D +TI SV SA   LGD+     +H  A     +  + + N+
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429

Query: 252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN 311
           ++ MY++C  ++KA  VF  + ++D+ISW S++ G   N +  EAL+ F +M     KPN
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPN 488

Query: 312 PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN 371
            VT +  +SAC  +G+   G++ H +++ + +  D  L NA++D+Y +CG ++ A N FN
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548

Query: 372 DIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLI 431
                E++V SWN+L+ GY  HG G  A+E F++M+E GV PD +TF S+L ACS +G++
Sbjct: 549 S---HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605

Query: 432 DEGRKCFADMT-KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLL 490
            +G + F  M  K S+ P +KHYAC+VD+LGRAG L EA++ I +MP+ P+ +VWGALL 
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665

Query: 491 ACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKP 545
           ACRIH     GE+AA ++F+L+P   GY++L+ N+YA + KW EV ++R+ M+  GL   
Sbjct: 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725

Query: 546 AAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDR 605
              S +E    +  F T D  +P  KE+   +E    ++K +G     S ++ ++E   +
Sbjct: 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE-VSK 784

Query: 606 EHMLNYHSEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANR 665
           + +   HSE+LA+AFG++N  P   + VTKNL +C +CH+  +FIS I RR+I VRD  +
Sbjct: 785 DDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQ 844

Query: 666 FHHFEGGTCSCND 678
           FHHF+ G CSC D
Sbjct: 845 FHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  475 bits (1224), Expect = e-159
 Identities = 220/608 (36%), Positives = 356/608 (58%), Gaps = 9/608 (1%)

Query: 80  TMIRAYANNGHCVETLELYSTMR-RSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIR 138
           + I      G   E LEL+  +      +  + T+  +++AC +   I   K V+  +  
Sbjct: 92  SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151

Query: 139 TGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALIL 198
           +GF  D Y+   ++ M+ KCG   D  ++FDEM  R+L SW  +I     A    EA  L
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211

Query: 199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR 258
           F++  ++G  ++  T V +  A   LG     Q +H   +    + D  +  +++ MY++
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271

Query: 259 CGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALIL 318
           CG++E AR VFD M ++  ++WNSML GY  +G + EAL L+ EM++S    +  T  I+
Sbjct: 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331

Query: 319 VSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER 378
           +   + L   +  ++ H  +I +   +D     A++D+Y+K G ++ A N+F D  P  +
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF-DRMP-RK 389

Query: 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF 438
           N+ SWN LIAGYG HG G KA+E F +M+ EGV P+H+TF ++LSAC ++GL ++G + F
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449

Query: 439 ADMTK-LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-- 495
             M++   +KP   HYACM+++LGR G L EA+ MI++ P  P  ++W ALL ACRIH  
Sbjct: 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN 509

Query: 496 ---GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIE 552
              G +AA  L+ + PE    +V++ N+Y +S +  E  K+ E +K KGL    A + IE
Sbjct: 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569

Query: 553 YGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYH 612
             K    F + DR++P  +E+Y+K++ +  EI   GY+ + +  L DV++++ +    YH
Sbjct: 570 VKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYH 629

Query: 613 SEKLAVAFGIMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGG 672
           SEKLA+AFG++N +    +Q+T++ R+C DCH   +FI+ + +R+I+VRDA+RFHHF+ G
Sbjct: 630 SEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLG 689

Query: 673 TCSCNDYW 680
            CSC DYW
Sbjct: 690 KCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  260 bits (665), Expect = 8e-76
 Identities = 132/389 (33%), Positives = 207/389 (53%), Gaps = 3/389 (0%)

Query: 76  FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD 135
           F WN ++  YA  G+  E L LY  M  +G+  + YTFP VL+ C     +  G+ VH  
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212

Query: 136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEA 195
           ++R GF  D  V  AL+ MY KCG       VFD M  RD +SW  MI+ Y +  +  E 
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272

Query: 196 LILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAM 255
           L LF   ++  +  D +TI SV SA   LGD    + +HGY +   F  D+ + NS++ M
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332

Query: 256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTA 315
           Y   G+  +A  VF  ME +D +SW +M++GY +NG   +AL  +  M+  +  P+ +T 
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392

Query: 316 LILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP 375
             ++SAC  LG   +G K H       +     + NA+++MY+KC  +D A  +F++I  
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-- 450

Query: 376 SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR 435
            E++V SW  +IAG  ++    +AL FF QML   +KP+ +T  + LSAC+  G +  G+
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

Query: 436 KCFADMTKLSVKPEVKHYACMVDMLGRAG 464
           +  A + +  +  +      ++D+  R G
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCG 538

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  230 bits (588), Expect = 3e-65
 Identities = 129/467 (27%), Positives = 236/467 (50%), Gaps = 13/467 (2%)

Query: 44  LGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRR 103
             A  ++ Y  +     +R L  +  +  S     N+ +RA  ++G   + L+L  +M+ 
Sbjct: 21  HKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDS-NSQLRALCSHGQLEQALKLLESMQE 79

Query: 104 SGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDD 163
             +  +   +  + + C     + EG  V    + +       +  A++ M+ + G+   
Sbjct: 80  LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139

Query: 164 GCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ 223
              VF +M  RDL SW V++  Y +A   +EAL L+ +    G+  D  T   V    G 
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199

Query: 224 LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSM 283
           + D+ + + VH + +   F  D+ + N+++ MY +CG+V  ARLVFD M +RD ISWN+M
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259

Query: 284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM 343
           ++GY +NG+  E L LF  M+     P+ +T   ++SAC  LG  +LGR+ HGY++ +  
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319

Query: 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFF 403
            +D ++ N+++ MY   G    AE +F+ +    ++  SW  +I+GY  +G   KALE +
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNGLPDKALETY 377

Query: 404 SQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYAC----MVDM 459
           + M ++ V PD IT  S+LSAC+  G +D G K    + +L+ +  +  Y      +++M
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVK----LHELAERKGLISYVVVANALIEM 433

Query: 460 LGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI-HGEIAANYLFQ 505
             +  C+ +A ++   +P   +   W +++   R+ +    A   F+
Sbjct: 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFR 479

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  183 bits (467), Expect = 2e-49
 Identities = 119/405 (29%), Positives = 198/405 (48%), Gaps = 14/405 (3%)

Query: 4   LGPSTEGFYDQLLKSCNFLASLR---QIHSSLTTSGLINQALHLGAKIIIKYTTYGEPNT 60
           L  ST   YD L+++C  L S+R    ++  + +SG      ++  ++++ +   G    
Sbjct: 121 LPAST---YDALVEACIALKSIRCVKAVYWHVESSGF-EPDQYMMNRVLLMHVKCGMLID 176

Query: 61  ARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKAC 120
           AR LF+ +      S  W T+I    + G+  E   L+  M   G  +   TF  +L+A 
Sbjct: 177 ARRLFDEMPERNLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234

Query: 121 ASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWT 180
           A       G+ +H  +++TG + D++V  AL+DMY+KCG  +D   VFD M  +  V+W 
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294

Query: 181 VMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICN 240
            M+  Y      EEAL L+ + +  G+  D  T   +     +L  +  A+  H   I  
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354

Query: 241 AFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF 300
            F  D+    ++V +Y++ G +E AR VFD M +++LISWN+++ GY  +G+ ++A+ +F
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414

Query: 301 DEMQNSDCKPNPVTALILVSACTYLG-SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359
           + M      PN VT L ++SAC Y G S Q    F     N  +K  A     ++++  +
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474

Query: 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGH---GRKALE 401
            G LD A  M     P +  V+ W  L+    +H +   GR A E
Sbjct: 475 EGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAE 518

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 85.5 bits (212), Expect = 6e-20
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 14/103 (13%)

Query: 575 KKVESMAVEIKMAGYMPDLSCALHDVEDED------REHMLNYHSEKLAVAFGIMNLTPE 628
            K E     IK+ G +P+     HDV+ E+      +  +L  H+EK A+A+G++     
Sbjct: 21  SKEELF-QRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTTRI- 78

Query: 629 AVVQVTKNL-RVCNDCHSAFRFISYIYRRKIIVRDANRFHHFE 670
                 K L R+C DCH  FR+I+    R+IIVRD +RFHHF+
Sbjct: 79  -----IKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 299 LFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF--HGYIINSNMKIDATLRNAVMDM 356
           +F EM N+  + N  T   L+  C   G  Q+ + F  +G + + N+K D  + NA++  
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGIMRSKNVKPDRVVFNALISA 551

Query: 357 YAKCGDLDTA----ENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK 412
             + G +D A      M  + HP + +  +   L+      G   +A E +  + E  +K
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

Query: 413 PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM 472
                +T  +++CS  G  D     + DM K  VKP+   ++ +VD+ G AG L +AF++
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671

Query: 473 IKQMP---LPPNDSVWGALLLAC 492
           ++      +      + +L+ AC
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGAC 694

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.3 bits (145), Expect = 1e-11
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH 427
           +V ++N LI GY   G   +AL+ F++M + G+KP+  T++ ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 82/372 (22%), Positives = 153/372 (41%), Gaps = 36/372 (9%)

Query: 112 TFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEM 171
           TF  ++  CAS+  I     V   +   G  +D  +   L+   AK G+ D   +VF EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

Query: 172 SVR----DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLG-- 225
                  ++ ++  +I    +A +  +A   +   + + +  D V   ++ SA GQ G  
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558

Query: 226 ----DVL---KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLI 278
               DVL   KA+        +    D     +++   A  G V++A+ V+ M+ + ++ 
Sbjct: 559 DRAFDVLAEMKAET-------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

Query: 279 SWNSMLTGYI----QNGQASEALLLFDEMQNSDCKPNPV--TALILVSACTYLGSRQLGR 332
               + T  +    Q G    AL ++D+M+    KP+ V  +AL+ V+     G      
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA-----GHAGDLD 666

Query: 333 KFHGYIIN---SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN--VSSWNVLI 387
           K    + +     +K+     +++M   +   +   A  ++ DI   +    VS+ N LI
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726

Query: 388 AGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVK 447
                     KALE  S+M   G+ P+ IT++ +L A       D G    +   +  +K
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786

Query: 448 PEVKHYACMVDM 459
           P +    C+  +
Sbjct: 787 PNLVMCRCITGL 798

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 25/253 (9%)

Query: 257 ARCGNVEKARLVFDMME----KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP 312
           A+ G V+    VF  M     + ++ ++ +++ G  + GQ ++A   +  M++ + KP+ 
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542

Query: 313 VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDAT-------LRNAVMDMYAKCGDLDT 365
           V    L+SAC   G+    R F    + + MK +            A+M   A  G +D 
Sbjct: 543 VVFNALISACGQSGAVD--RAFD---VLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597

Query: 366 AENMFNDIHPSERNVSS----WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI 421
           A+ ++  IH  E N+      + + +      G    AL  +  M ++GVKPD + F+++
Sbjct: 598 AKEVYQMIH--EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655

Query: 422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM---IKQMPL 478
           +    HAG +D+  +   D  K  +K     Y+ ++     A    +A ++   IK + L
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715

Query: 479 PPNDSVWGALLLA 491
            P  S   AL+ A
Sbjct: 716 RPTVSTMNALITA 728

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 4e-10
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC 322
           D++++N+++ GY + G+  EAL LF+EM+    KPN  T  IL+   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 62.2 bits (151), Expect = 7e-10
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 23/253 (9%)

Query: 257 ARCGNVEKARLVFDMME----KRDLISWNSMLTGYIQNGQASEALLLFDEM--QNSDCKP 310
           AR G V KA   + +M     K D + +N++++   Q+G    A  +  EM  +     P
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577

Query: 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMF 370
           + +T   L+ AC   G     ++ +  I   N+K    +    ++  ++ GD D A +++
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637

Query: 371 ND-----IHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425
           +D     + P E   S+   L+   G  G   KA E      ++G+K   ++++S++ AC
Sbjct: 638 DDMKKKGVKPDEVFFSA---LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694

Query: 426 SHAGLIDEGRKCFADMTKLSVKPEVKHY------ACMVDMLGRAGCLYEAFDMIKQMPLP 479
           S+A    +  + + D+  + ++P V          C  + L +A    E    +K++ L 
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA---LEVLSEMKRLGLC 751

Query: 480 PNDSVWGALLLAC 492
           PN   +  LL+A 
Sbjct: 752 PNTITYSILLVAS 764

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 78  WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACA 121
           +NT+I  Y   G   E L+L++ M++ GI  N YT+  ++    
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.0 bits (127), Expect = 5e-07
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458
           AL     + E G+K D   +T+++S C+ +G +D   + F +M    V+  V  +  ++D
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515

Query: 459 MLGRAGCLYEAF---DMIKQMPLPPNDSVWGALLLACRIHGEI--AANYLFQL------- 506
              RAG + +AF    +++   + P+  V+ AL+ AC   G +  A + L ++       
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 507 EPEHTGYFVLMSNIYAASNKWREVGKLRE 535
           +P+H     LM     A     +V + +E
Sbjct: 576 DPDHITVGALMK----ACANAGQVDRAKE 600

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD 414
           ++N LI G    G   +ALE F +M E G++PD
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 413 PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR 462
           PD +T+ +++      G ++E  K F +M K  +KP V  Y+ ++D L +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN 311
           +++N+++ G  + G+  EAL LF EM+    +P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDC 308
           +++NS+++GY + G+  EAL LF EM+    
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGV 411
            ++N LI+GY   G   +ALE F +M E+GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 250 NSIVAMYARCGNVEKARLVFDMMEKR----DLISWNSMLTGY 287
           N+++  Y + G VE+A  +F+ M+KR    ++ +++ ++ G 
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 76  FLWNTMIRAYANNGHCVETLELYSTMRRSGI 106
             +N++I  Y   G   E LEL+  M+  G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 76  FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS 110
             +NT+I      G   E LEL+  M+  GI  + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	680
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.75
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.69
PRK14574	822	hmsH outer membrane protein; Provisional	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.57
KOG2003	840	consensus TPR repeat-containing protein [General f	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.52
KOG2076	895	consensus RNA polymerase III transcription factor	99.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.48
KOG2003	840	consensus TPR repeat-containing protein [General f	99.47
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.37
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.37
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.33
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.32
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
PF13041	50	PPR_2: PPR repeat family	99.28
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.26
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.25
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.24
PF13041	50	PPR_2: PPR repeat family	99.23
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.21
PRK12370	553	invasion protein regulator; Provisional	99.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.12
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.12
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.11
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.1
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.08
PRK12370	553	invasion protein regulator; Provisional	99.08
PRK11189	296	lipoprotein NlpI; Provisional	99.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.02
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.99
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.97
KOG1129	478	consensus TPR repeat-containing protein [General f	98.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.92
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.89
KOG1129	478	consensus TPR repeat-containing protein [General f	98.88
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.83
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.82
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.76
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.76
PRK11189	296	lipoprotein NlpI; Provisional	98.74
PRK04841	903	transcriptional regulator MalT; Provisional	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.67
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.67
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.63
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.61
KOG1125	579	consensus TPR repeat-containing protein [General f	98.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.6
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.59
PRK04841	903	transcriptional regulator MalT; Provisional	98.49
PF12854	34	PPR_1: PPR repeat	98.48
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.47
PF12854	34	PPR_1: PPR repeat	98.46
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.46
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.46
KOG1125	579	consensus TPR repeat-containing protein [General f	98.45
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.34
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.34
PLN02789	320	farnesyltranstransferase	98.27
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.26
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.19
PRK15359	144	type III secretion system chaperone protein SscB;	98.18
PLN02789	320	farnesyltranstransferase	98.16
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.14
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.13
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.11
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.1
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.08
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.01
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.01
PRK15359	144	type III secretion system chaperone protein SscB;	98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.98
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.97
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.95
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.92
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.91
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.89
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.86
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.84
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.73
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.7
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.62
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.35
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.32
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.26
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.24
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.2
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.14
PF13431	34	TPR_17: Tetratricopeptide repeat	97.13
KOG0553	304	consensus TPR repeat-containing protein [General f	97.1
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.08
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.07
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.04
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.02
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.01
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.99
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.95
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.93
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.83
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.81
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.78
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.72
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.72
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.69
PF12688	120	TPR_5: Tetratrico peptide repeat	96.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.61
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.59
KOG0553	304	consensus TPR repeat-containing protein [General f	96.54
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.39
PF12688	120	TPR_5: Tetratrico peptide repeat	96.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.05
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.9
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.87
PRK10803	263	tol-pal system protein YbgF; Provisional	95.8
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.78
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.63
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.63
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.53
KOG3941	406	consensus Intermediate in Toll signal transduction	95.5
PRK10803	263	tol-pal system protein YbgF; Provisional	95.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.41
PRK15331	165	chaperone protein SicA; Provisional	95.35
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.35
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.21
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.09
PF13371	73	TPR_9: Tetratricopeptide repeat	95.07
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.06
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.01
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.96
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.9
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.48
PF13371	73	TPR_9: Tetratricopeptide repeat	94.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.33
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.28
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.23
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.09
PRK15331	165	chaperone protein SicA; Provisional	94.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.59
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.57
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.46
KOG3941	406	consensus Intermediate in Toll signal transduction	93.19
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.66
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.54
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.33
PRK11906	458	transcriptional regulator; Provisional	92.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.29
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.15
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.11
KOG1258	577	consensus mRNA processing protein [RNA processing	92.1
KOG1585	308	consensus Protein required for fusion of vesicles	92.08
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.87
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.71
KOG4555	175	consensus TPR repeat-containing protein [Function	91.5
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.88
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.63
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.56
KOG1585	308	consensus Protein required for fusion of vesicles	90.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.12
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.97
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.8
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.78
PF13512	142	TPR_18: Tetratricopeptide repeat	89.73
KOG1258	577	consensus mRNA processing protein [RNA processing	89.66
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.49
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.13
PRK11906	458	transcriptional regulator; Provisional	89.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.74
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.59
KOG4555	175	consensus TPR repeat-containing protein [Function	88.55
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.15
PRK09687	280	putative lyase; Provisional	88.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	88.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.98
PF13428	44	TPR_14: Tetratricopeptide repeat	87.89
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.6
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.57
PF13428	44	TPR_14: Tetratricopeptide repeat	87.35
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.19
PF13512	142	TPR_18: Tetratricopeptide repeat	87.16
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.15
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.91
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.31
COG4105	254	ComL DNA uptake lipoprotein [General function pred	86.09
PRK09687	280	putative lyase; Provisional	85.87
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.81
KOG1586	288	consensus Protein required for fusion of vesicles	85.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	83.47
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.46
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.51
KOG4234	271	consensus TPR repeat-containing protein [General f	82.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	81.98
PF13431	34	TPR_17: Tetratricopeptide repeat	81.62
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	80.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.01

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-131  Score=1134.90  Aligned_cols=664  Identities=38%  Similarity=0.710  Sum_probs=650.7

Q ss_pred             CCcCC-CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccC
Q 037256            1 MRRLG-PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHN   70 (680)
Q Consensus         1 ~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~   70 (680)
                      |.+.| .||.+||+++|++|+..+++   +++|..+.      |++++|+||++|.+ +      |++++|.++|++|+.
T Consensus       178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k-~------g~~~~A~~lf~~m~~  250 (857)
T PLN03077        178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-C------GDVVSARLVFDRMPR  250 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc-C------CCHHHHHHHHhcCCC
Confidence            45678 79999999999999998887   89999987      99999999999999 9      999999999999998


Q ss_pred             CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256           71 DKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA  150 (680)
Q Consensus        71 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (680)
                      +  |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+
T Consensus       251 ~--d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~  328 (857)
T PLN03077        251 R--DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS  328 (857)
T ss_pred             C--CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence            7  99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256          151 LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA  230 (680)
Q Consensus       151 Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  230 (680)
                      |+.+|+++|++++|.++|++|..||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|
T Consensus       329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a  408 (857)
T PLN03077        329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG  408 (857)
T ss_pred             HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256          231 QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP  310 (680)
Q Consensus       231 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (680)
                      .++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++|
T Consensus       409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p  487 (857)
T PLN03077        409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP  487 (857)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986 5999


Q ss_pred             CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256          311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY  390 (680)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~  390 (680)
                      |..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+   .+|+++||+||.+|
T Consensus       488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~  564 (857)
T PLN03077        488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGY  564 (857)
T ss_pred             CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998   78999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh-cCCCcChHHHHHHHHHHHhcCCHHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEA  469 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A  469 (680)
                      +++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++|+++|+|+|++++|
T Consensus       565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999995 49999999999999999999999999


Q ss_pred             HHHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 037256          470 FDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKK  544 (680)
Q Consensus       470 ~~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~  544 (680)
                      .+++++|+++||..+|++|+++|+.|     |+.+++++++++|+++++|+.|+++|+..|+|++|.++++.|+++|++|
T Consensus       645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k  724 (857)
T PLN03077        645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV  724 (857)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999988     7889999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHHHHhcccC
Q 037256          545 PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMN  624 (680)
Q Consensus       545 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  624 (680)
                      +||+|||++++.+|.|.+||.+||+.++||..++++..+|++.||+||+..++ ++++++|+..+++||||||+|||||+
T Consensus       725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~  803 (857)
T PLN03077        725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN  803 (857)
T ss_pred             CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999888 55788999999999999999999999


Q ss_pred             CCCCCeEEEEecccccchhhhHHHHHhhhhCceEEEecCCccccccCccccCCC
Q 037256          625 LTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND  678 (680)
Q Consensus       625 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~  678 (680)
                      +|+|+||||+||||+|+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus       804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence            999999999999999999999999999999999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-123  Score=1044.54  Aligned_cols=605  Identities=36%  Similarity=0.668  Sum_probs=596.8

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSG-ISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALV  152 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li  152 (680)
                      +.++|+++|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            66799999999999999999999999998764 78999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 037256          153 DMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQA  232 (680)
Q Consensus       153 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  232 (680)
                      ++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.+
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~  245 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ  245 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256          233 VHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP  312 (680)
Q Consensus       233 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (680)
                      +|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus       246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~  325 (697)
T PLN03081        246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ  325 (697)
T ss_pred             HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh
Q 037256          313 VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM  392 (680)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~  392 (680)
                      .||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|  .+||+.+||+||.+|++
T Consensus       326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--PRKNLISWNALIAGYGN  403 (697)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--CCCCeeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999  78999999999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256          393 HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       393 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      +|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+. |+.|+..+|++|+++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999876 999999999999999999999999999


Q ss_pred             HHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 037256          472 MIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPA  546 (680)
Q Consensus       472 ~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~  546 (680)
                      ++++|+.+|+..+|++|+.+|+.+     |+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.|
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            999999999999999999999988     788999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHHHHhcccCCC
Q 037256          547 AFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLT  626 (680)
Q Consensus       547 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  626 (680)
                      |+|||++++.+|.|.+||..||+.++||.++.++..+|++.||+||+.+++||+++++|+..+++||||||+||||+++|
T Consensus       564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~  643 (697)
T PLN03081        564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS  643 (697)
T ss_pred             CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecccccchhhhHHHHHhhhhCceEEEecCCccccccCccccCCCCC
Q 037256          627 PEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW  680 (680)
Q Consensus       627 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~  680 (680)
                      +|.||||+||||+|+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus       644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-81  Score=722.33  Aligned_cols=645  Identities=26%  Similarity=0.404  Sum_probs=571.4

Q ss_pred             CCcCC-CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccC
Q 037256            1 MRRLG-PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHN   70 (680)
Q Consensus         1 ~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~   70 (680)
                      |.+.| .|+..||..++++|...+.+   .++|.++.      ++.++|+|+++|++ +      |+++.|+++|++|++
T Consensus        77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~-~------g~~~~A~~~f~~m~~  149 (857)
T PLN03077         77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR-F------GELVHAWYVFGKMPE  149 (857)
T ss_pred             HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-C------CChHHHHHHHhcCCC
Confidence            44567 68889999999999988776   88998877      78899999999999 9      999999999999998


Q ss_pred             CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256           71 DKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA  150 (680)
Q Consensus        71 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (680)
                      +  |+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++++|..+++.|+.||..++|+
T Consensus       150 ~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~  227 (857)
T PLN03077        150 R--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA  227 (857)
T ss_pred             C--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence            7  99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256          151 LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA  230 (680)
Q Consensus       151 Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  230 (680)
                      ||.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a  307 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG  307 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256          231 QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP  310 (680)
Q Consensus       231 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (680)
                      .++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus       308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P  387 (857)
T PLN03077        308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP  387 (857)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256          311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY  390 (680)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~  390 (680)
                      |..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|  .++|+++||+||.+|
T Consensus       388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m--~~~d~vs~~~mi~~~  465 (857)
T PLN03077        388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI--PEKDVISWTSIIAGL  465 (857)
T ss_pred             CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCeeeHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999  789999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF  470 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  470 (680)
                      +++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.+.+++..+.+.|+.++..++++||++|+++|++++|.
T Consensus       466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~  544 (857)
T PLN03077        466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW  544 (857)
T ss_pred             HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence            999999999999999986 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH-hCCC
Q 037256          471 DMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQ--LEPEHTGYFVLMSNIYAASNKWREVGKLREDMK-NKGL  542 (680)
Q Consensus       471 ~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~--l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~  542 (680)
                      ++|+++  .||.++|++++.+|.++     |...++++.+  ..|+ ..+|..+..+|++.|++++|.++|+.|. +.|+
T Consensus       545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi  621 (857)
T PLN03077        545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI  621 (857)
T ss_pred             HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence            999998  89999999999999998     4445555554  4565 5789999999999999999999999999 6788


Q ss_pred             CCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHH-HHhc
Q 037256          543 KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLA-VAFG  621 (680)
Q Consensus       543 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~  621 (680)
                      .|+..    .+...+..+..    .+..++    +.++++   +.+..||...+-.-+..+...+.+.- .|+.| ..+.
T Consensus       622 ~P~~~----~y~~lv~~l~r----~G~~~e----A~~~~~---~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~  685 (857)
T PLN03077        622 TPNLK----HYACVVDLLGR----AGKLTE----AYNFIN---KMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFE  685 (857)
T ss_pred             CCchH----HHHHHHHHHHh----CCCHHH----HHHHHH---HCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence            76432    11111111111    112222    344444   44688998665444444322111110 12222 3467


Q ss_pred             ccCCCCCCeEEEEecccccchhhhHHHHHhhhhCceEE-------EecCCccccccCccccC
Q 037256          622 IMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKII-------VRDANRFHHFEGGTCSC  676 (680)
Q Consensus       622 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~csc  676 (680)
                      +.|...+..+.+.+-+...|++.++.+....|..+.+.       |.-.+..|-|..|--|-
T Consensus       686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h  747 (857)
T PLN03077        686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH  747 (857)
T ss_pred             hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence            78887777776667778899999999999999777332       12246788888776543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.2e-67  Score=590.96  Aligned_cols=499  Identities=19%  Similarity=0.248  Sum_probs=457.0

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND---KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS  110 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  110 (680)
                      +...+..+++.|.+ +      |++++|+++|+.|+.+   .|+...++.++.+|.+.|..++|+.+|+.|..    ||.
T Consensus       369 ~~~~~~~~y~~l~r-~------G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~  437 (1060)
T PLN03218        369 KSPEYIDAYNRLLR-D------GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL  437 (1060)
T ss_pred             CchHHHHHHHHHHH-C------cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH
Confidence            56677778888888 8      9999999999999987   23556677888899999999999999999974    899


Q ss_pred             ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHH
Q 037256          111 YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS----VRDLVSWTVMITAY  186 (680)
Q Consensus       111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~  186 (680)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|.    .||..+|+.||.+|
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy  517 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC  517 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998    58999999999999


Q ss_pred             HhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH--ccCCCChhHHHHHHHHHHhcCCHHH
Q 037256          187 EQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC--NAFLEDLCIQNSIVAMYARCGNVEK  264 (680)
Q Consensus       187 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~  264 (680)
                      ++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+  .|+.||..+|++||.+|+++|++++
T Consensus       518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde  597 (1060)
T PLN03218        518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR  597 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999986  6789999999999999999999999


Q ss_pred             HHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256          265 ARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN  340 (680)
Q Consensus       265 A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~  340 (680)
                      |.++|+.|.+    ++..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus       598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k  677 (1060)
T PLN03218        598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK  677 (1060)
T ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999985    577999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256          341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP--SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF  418 (680)
Q Consensus       341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  418 (680)
                      .|+.|+..+|++||++|+++|++++|.++|++|..  ..||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus       678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            99999999999999999999999999999999943  3799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH----hcC-------------------CHHHHHHHHHh
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG----RAG-------------------CLYEAFDMIKQ  475 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~  475 (680)
                      ++++.+|++.|++++|.++|++|.+.|+.||..+|++|+.++.    +++                   ..++|+.+|++
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e  837 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE  837 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997643    222                   34679999999


Q ss_pred             C---CCCCCHhHHHHHHHHHHHH-HHHHHHHHHc---c--CCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCC
Q 037256          476 M---PLPPNDSVWGALLLACRIH-GEIAANYLFQ---L--EPEHTGYFVLMSNIYAASNKW-REVGKLREDMKNKGLKKP  545 (680)
Q Consensus       476 m---~~~p~~~~~~~ll~a~~~~-~~~~~~~~~~---l--~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~  545 (680)
                      |   ++.||..+|+++|+++... +...+..+++   .  .+.+..+|..|.+.+   |++ ++|..++++|.+.|+.|+
T Consensus       838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~  914 (1060)
T PLN03218        838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPS  914 (1060)
T ss_pred             HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCC
Confidence            9   7899999999999554333 3334444443   2  344567889999887   444 589999999999999875


Q ss_pred             C
Q 037256          546 A  546 (680)
Q Consensus       546 ~  546 (680)
                      .
T Consensus       915 ~  915 (1060)
T PLN03218        915 V  915 (1060)
T ss_pred             c
Confidence            5

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.4e-65  Score=573.86  Aligned_cols=432  Identities=26%  Similarity=0.463  Sum_probs=417.7

Q ss_pred             CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcc
Q 037256            6 PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSF   76 (680)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~   76 (680)
                      .||..||+.++++|+..+.+   +++|..+.      |++++|+|+++|.+ +      |++++|.++|++|+.+  |++
T Consensus       120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k-~------g~~~~A~~lf~~m~~~--~~~  190 (697)
T PLN03081        120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK-C------GMLIDARRLFDEMPER--NLA  190 (697)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc-C------CCHHHHHHHHhcCCCC--Cee
Confidence            58899999999999998877   89999887      99999999999999 9      9999999999999976  999


Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256           77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYA  156 (680)
Q Consensus        77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~  156 (680)
                      +||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..+.++++|..+.+.|+.+|..++|+||++|+
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~  270 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS  270 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHH
Q 037256          157 KCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGY  236 (680)
Q Consensus       157 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  236 (680)
                      ++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..
T Consensus       271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~  350 (697)
T PLN03081        271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG  350 (697)
T ss_pred             HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256          237 AICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL  316 (680)
Q Consensus       237 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (680)
                      +.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus       351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  430 (697)
T PLN03081        351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL  430 (697)
T ss_pred             HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCC
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIIN-SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGH  395 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~  395 (680)
                      .++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|+++ +..|+..+|++|+.+|..+|+
T Consensus       431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~  509 (697)
T PLN03081        431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKN  509 (697)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999976 699999999999999999999999999999998 248999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC
Q 037256          396 GRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE  449 (680)
Q Consensus       396 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~  449 (680)
                      .+.|..+++++.+  +.|+ ..+|+.+++.|++.|++++|.++++.|.+.|+...
T Consensus       510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            9999999999975  6776 46999999999999999999999999999987643

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.3e-63  Score=559.73  Aligned_cols=491  Identities=14%  Similarity=0.161  Sum_probs=453.8

Q ss_pred             CCCcchHHHHHHhccccccH---HHHHHHhh-------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc
Q 037256            6 PSTEGFYDQLLKSCNFLASL---RQIHSSLT-------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS   75 (680)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~---~~~h~~~~-------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~   75 (680)
                      .++...|..++..|.+.+.+   .++...+.       +..+++.++..|.+ .      |.+++|.++|+.|+.  ||.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~------g~~~eAl~lf~~M~~--pd~  437 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-Q------RAVKEAFRFAKLIRN--PTL  437 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-C------CCHHHHHHHHHHcCC--CCH
Confidence            34555688888888766766   55555555       66677888888998 8      999999999999997  699


Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037256           76 FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMY  155 (680)
Q Consensus        76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~  155 (680)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy  517 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC  517 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhccCChHH
Q 037256          156 AKCGQTDDGCKVFDEMS----VRDLVSWTVMITAYEQAEKPEEALILFQKTQQ--EGLLSDSVTIVSVASAVGQLGDVLK  229 (680)
Q Consensus       156 ~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~  229 (680)
                      ++.|++++|.++|++|.    .||.++||.||.+|++.|++++|.++|++|..  .|+.||..||+.++.+|++.|++++
T Consensus       518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde  597 (1060)
T PLN03218        518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR  597 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999996    58999999999999999999999999999986  6799999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          230 AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       230 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      |.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.++|++|.+
T Consensus       598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k  677 (1060)
T PLN03218        598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK  677 (1060)
T ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999984    7999999999999999999999999999999


Q ss_pred             CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhHH
Q 037256          306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSSW  383 (680)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~  383 (680)
                      .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|...  .||..+|
T Consensus       678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999543  7999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----A-------------------GLIDEGRKCFAD  440 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~  440 (680)
                      +++|.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+    .                   +..++|..+|++
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e  837 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE  837 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876542    1                   224679999999


Q ss_pred             hhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHHH---HHHHHHHHHc
Q 037256          441 MTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM---PLPPNDSVWGALLLACRIH---GEIAANYLFQ  505 (680)
Q Consensus       441 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~---~~~~~~~~~~  505 (680)
                      |.+.|+.||..+|+.++.++.+.+..+.+..+++.|   +..|+..+|++|+.++...   |...++.+.+
T Consensus       838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~  908 (1060)
T PLN03218        838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS  908 (1060)
T ss_pred             HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998   4567889999999998754   3344444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.7e-29  Score=293.52  Aligned_cols=493  Identities=10%  Similarity=0.061  Sum_probs=398.4

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      ++.+++.+...|.+ .      |++++|.+.|+.+....| +...|..+...+...|++++|++.|+++.+.... +...
T Consensus       362 ~~~~~~~l~~~~~~-~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~  433 (899)
T TIGR02917       362 DPAALSLLGEAYLA-L------GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRA  433 (899)
T ss_pred             CHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhh
Confidence            66777888888888 8      999999999999887777 5667888888899999999999999998876533 3345


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 037256          113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQA  189 (680)
Q Consensus       113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~  189 (680)
                      ...++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|.+.|+++.   ..+...+..+...+...
T Consensus       434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  512 (899)
T TIGR02917       434 DLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE  512 (899)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence            5567777888999999999999887753 5677788889999999999999999998764   23566788888889999


Q ss_pred             CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256          190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF  269 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f  269 (680)
                      |++++|.+.|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..++
T Consensus       513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  590 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL  590 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999988764 4466778888888888999999999998887765 455667778888999999999999999


Q ss_pred             HhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 037256          270 DMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID  346 (680)
Q Consensus       270 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~  346 (680)
                      +.+.+   .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  668 (899)
T TIGR02917       591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN  668 (899)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence            88864   467788888999999999999999999888653 4456677788888888999999999998888764 456


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC  425 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  425 (680)
                      ...+..+...+.+.|++++|.++++.+.... .+...|..+...+...|++++|++.|+++...  .|+..++..+..++
T Consensus       669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  746 (899)
T TIGR02917       669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL  746 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence            7788888889999999999999998885543 35667888888888899999999999988884  56667777788888


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHH----HHHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLP-PNDSVWGALLLACRIH----GEIA  499 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~----~~~~  499 (680)
                      .+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++...++.+...+...    +...
T Consensus       747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~  825 (899)
T TIGR02917       747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEY  825 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            88899999998888888754 566778888888888899999999888887 333 3566677776666554    5666


Q ss_pred             HHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          500 ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       500 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      +++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            7777888888888888888888888888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.6e-29  Score=291.34  Aligned_cols=491  Identities=12%  Similarity=0.041  Sum_probs=406.8

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      ++.....+...+.+ .      |++++|...|+.+....| +...|+.+...+.+.|++++|.++|+++.+..+ .+...
T Consensus       328 ~~~~~~~la~~~~~-~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~  399 (899)
T TIGR02917       328 SHQARRLLASIQLR-L------GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAA  399 (899)
T ss_pred             ChHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence            55666777777777 7      999999999998887766 567888899999999999999999999887642 24556


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhC
Q 037256          113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQA  189 (680)
Q Consensus       113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  189 (680)
                      +..+...+...|+.++|...+..+.+... ........++..|.+.|++++|.++++++..   .+..+|+.+...+...
T Consensus       400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  478 (899)
T TIGR02917       400 RTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK  478 (899)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence            77777788889999999999999888752 3445666788889999999999999988763   3667899999999999


Q ss_pred             CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256          190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF  269 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f  269 (680)
                      |++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+.++|...|
T Consensus       479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  556 (899)
T TIGR02917       479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL  556 (899)
T ss_pred             CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999988753 3455667778888889999999999999998765 456778888999999999999999999


Q ss_pred             HhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 037256          270 DMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID  346 (680)
Q Consensus       270 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~  346 (680)
                      +++.+   .+...+..++..|.+.|++++|..+++++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+
T Consensus       557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  634 (899)
T TIGR02917       557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS  634 (899)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence            98854   356678888999999999999999999998653 5677888899999999999999999999988765 456


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC  425 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  425 (680)
                      ...+..+..+|.+.|++++|...|+++....| +..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+
T Consensus       635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~  713 (899)
T TIGR02917       635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY  713 (899)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence            77888899999999999999999998866555 47889999999999999999999999998864 44556778888889


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH-----HHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP-NDSVWGALLLACRIH-----GEI  498 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~-----~~~  498 (680)
                      ...|++++|.+.|+.+...+  |+..++..+..++.+.|++++|.+.++++ ...| +...+..+...+...     +..
T Consensus       714 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~  791 (899)
T TIGR02917       714 LRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK  791 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999988764  55577788899999999999999999887 3344 455555555555543     777


Q ss_pred             HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      .++++++..|+++..+..+++++...|+ ++|++.++++.+..
T Consensus       792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            8888899999999999999999999999 88999999987653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.97  E-value=1.7e-32  Score=227.15  Aligned_cols=106  Identities=53%  Similarity=0.874  Sum_probs=97.3

Q ss_pred             ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhh--------hhhhhhchHHHHH
Q 037256          547 AFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDR--------EHMLNYHSEKLAV  618 (680)
Q Consensus       547 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~  618 (680)
                      |+||+++    |.|.+||.+||+.        ++..++...||.|++..+.|+++++++        +..+++||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            6899876    9999999999987        556777889999999999998877665        6688999999999


Q ss_pred             HhcccCCCCCCeEEEEecc-cccchhhhHHHHHhhhhCceEEEecCCcccccc
Q 037256          619 AFGIMNLTPEAVVQVTKNL-RVCNDCHSAFRFISYIYRRKIIVRDANRFHHFE  670 (680)
Q Consensus       619 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~  670 (680)
                      ||||+++      +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999998      899999 999999999999999999999999999999996

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=2.2e-20  Score=220.67  Aligned_cols=489  Identities=12%  Similarity=0.057  Sum_probs=302.5

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcch-H----------------HHHHHHHHhCCCchHHHH
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFL-W----------------NTMIRAYANNGHCVETLE   96 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~-~----------------~~li~~~~~~g~~~~A~~   96 (680)
                      ++.+...+...+.+ .      |+.++|.+.+++..+..|+... +                -.+.+.+.+.|++++|+.
T Consensus        61 ~p~~~~~~~~~~l~-~------g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~  133 (1157)
T PRK11447         61 NPDVIAARFRLLLR-Q------GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA  133 (1157)
T ss_pred             CHHHHHHHHHHHHh-C------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence            66777777777777 7      9999999999999988885432 2                223346788999999999


Q ss_pred             HHHHHHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 037256           97 LYSTMRRSGISSNSY-TFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD  175 (680)
Q Consensus        97 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~  175 (680)
                      .|+++.+... |+.. ............++.++|...++.+++.. +.+...+..+...+...|+.++|+..|+++....
T Consensus       134 ~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~  211 (1157)
T PRK11447        134 SYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP  211 (1157)
T ss_pred             HHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Confidence            9999987532 2321 11111222234588999999999999875 4567778889999999999999999988763211


Q ss_pred             h------hH-----------------HH----------------------------------HHHHHHHhCCCccHHHHH
Q 037256          176 L------VS-----------------WT----------------------------------VMITAYEQAEKPEEALIL  198 (680)
Q Consensus       176 ~------~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~~  198 (680)
                      .      ..                 +.                                  .....+...|++++|+..
T Consensus       212 ~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~  291 (1157)
T PRK11447        212 AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE  291 (1157)
T ss_pred             CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH
Confidence            0      00                 10                                  112345567788888888


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCCh-hHH------------HHHHHHHHhcCCHHHH
Q 037256          199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDL-CIQ------------NSIVAMYARCGNVEKA  265 (680)
Q Consensus       199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------------~~Li~~y~~~g~~~~A  265 (680)
                      |++.++.. +.+...+..+..++...|++++|...+..+++....... ..+            ..+...+.+.|++++|
T Consensus       292 l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        292 LQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            88777653 235666777777778888888888888887765432211 111            1223456677888888


Q ss_pred             HHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256          266 RLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN  342 (680)
Q Consensus       266 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~  342 (680)
                      ...|+++.+   .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.++|..++..+....
T Consensus       371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~  448 (1157)
T PRK11447        371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ  448 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence            888887764   345566777778888888888888888877642 223333333333332 233444444433221110


Q ss_pred             C--------CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          343 M--------KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       343 ~--------~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                      .        ......+..+...+...|++++|.+.|++.....|+ ...+..+...|.+.|++++|...++++.+  ..|
T Consensus       449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P  526 (1157)
T PRK11447        449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKP  526 (1157)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence            0        000112233444555566666666666665444443 44455555666666666666666666655  233


Q ss_pred             CHH-HHHH--------------------------------------------HHHHHHccCCHHHHHHHHHHhhhcCCCc
Q 037256          414 DHI-TFTS--------------------------------------------ILSACSHAGLIDEGRKCFADMTKLSVKP  448 (680)
Q Consensus       414 ~~~-t~~~--------------------------------------------ll~a~~~~g~~~~a~~~~~~m~~~~~~p  448 (680)
                      +.. .+..                                            +...+...|+.++|.++++.     .++
T Consensus       527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~  601 (1157)
T PRK11447        527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP  601 (1157)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence            221 2222                                            22334444555555555441     234


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHH
Q 037256          449 EVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN-DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIY  521 (680)
Q Consensus       449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~  521 (680)
                      +...+..+.+.|.+.|++++|++.+++. ...|+ ...+..+...+...     |...++++++..|+++..+..++.++
T Consensus       602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~  681 (1157)
T PRK11447        602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW  681 (1157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            4455666777777778888887777776 34443 44555555555444     56666777777777777777778888


Q ss_pred             HhcCChhHHHHHHHHHHhCC
Q 037256          522 AASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       522 ~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ...|++++|.++++.+....
T Consensus       682 ~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        682 AALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HhCCCHHHHHHHHHHHhhhC
Confidence            88888888888888776543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=6.9e-20  Score=216.47  Aligned_cols=473  Identities=11%  Similarity=0.086  Sum_probs=316.6

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH-----------------HHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF-----------------PFVL  117 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~ll  117 (680)
                      ++.+.|.+.++++....| |...+..++..+.+.|+.++|.+.+++..+..  |+...+                 ..+.
T Consensus        42 ~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A  119 (1157)
T PRK11447         42 HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQA  119 (1157)
T ss_pred             CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHH
Confidence            999999999999998888 67788999999999999999999999998864  444332                 2233


Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCcc
Q 037256          118 KACASNSLILEGKVVHGDIIRTGFLSDSYVQA-ALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPE  193 (680)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~  193 (680)
                      ..+...|++++|.+.++.+++.. +++..... .+.......|+.++|.+.|+++..  | +...+..+...+...|+++
T Consensus       120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~  198 (1157)
T PRK11447        120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD  198 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence            45778899999999999998764 33332211 112222346999999999999874  3 5667889999999999999


Q ss_pred             HHHHHHHHHHHcCC------------------CCCH-hHHH----------------------------------HHHHH
Q 037256          194 EALILFQKTQQEGL------------------LSDS-VTIV----------------------------------SVASA  220 (680)
Q Consensus       194 ~A~~~~~~m~~~g~------------------~p~~-~t~~----------------------------------~ll~~  220 (680)
                      +|++.|+++.....                  .++. ..+.                                  .....
T Consensus       199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~  278 (1157)
T PRK11447        199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA  278 (1157)
T ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            99999998865321                  0000 0010                                  01123


Q ss_pred             HhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHH------------
Q 037256          221 VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RD---LISWNSM------------  283 (680)
Q Consensus       221 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~---~~~~~~l------------  283 (680)
                      +...|++++|...+..+++.. +.+..++..|...|.+.|++++|+..|++..+  |+   ...|..+            
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            345567777777777766653 33556666677777777777777777766553  21   1112211            


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCH
Q 037256          284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDL  363 (680)
Q Consensus       284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~  363 (680)
                      ...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~  434 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP  434 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence            234556677777777777776643 2344455566666677777777777777776654 334445555555553 3456


Q ss_pred             HHHHHHHhhcCCCCCC----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHH
Q 037256          364 DTAENMFNDIHPSERN----------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLID  432 (680)
Q Consensus       364 ~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~  432 (680)
                      ++|...++.+....+.          ...+..+...+...|++++|++.|++..+  ..|+. ..+..+...+.+.|+++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence            7777776665222111          12344556677789999999999999998  56765 46777888999999999


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHH--------------------------------------------HHHHHhcCCHHH
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACM--------------------------------------------VDMLGRAGCLYE  468 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~l--------------------------------------------i~~~~~~g~~~~  468 (680)
                      +|...++++.+.. +.+...+..+                                            .+.+...|+.++
T Consensus       513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            9999999988752 2222222222                                            233444555555


Q ss_pred             HHHHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          469 AFDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       469 A~~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      |.++++.-|  ++...+..+-..+...     |...++++++.+|+++..+..++.+|...|++++|++.++...+.
T Consensus       592 A~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        592 AEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             HHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            555555322  2222333333333332     677788899999999999999999999999999999999987653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=1.6e-18  Score=195.75  Aligned_cols=469  Identities=13%  Similarity=0.034  Sum_probs=327.2

Q ss_pred             cCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256           53 TTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV  131 (680)
Q Consensus        53 ~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  131 (680)
                      ...|++++|...|+...+..| +..++..+.+.|.+.|++++|+..+++..+.  .|+...|..++...   ++.++|..
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~  129 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT  129 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence            344999999999999999988 5678899999999999999999999999886  45555555555333   88899999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHhcCCCCC--hhH-HHHHHHHHHhCCCccHHHHHHH
Q 037256          132 VHGDIIRTGFLSDSYVQAALVDM--------YAKCGQTDDGCKVFDEMSVRD--LVS-WTVMITAYEQAEKPEEALILFQ  200 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~Li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~  200 (680)
                      +++++++.. +.+..++..+...        |.+.++..+|++  .+...++  ... .-.+...|.+.|++++|++++.
T Consensus       130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            999999985 3445566656655        877777777776  3333333  433 4444899999999999999999


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHhc-cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 037256          201 KTQQEGLLSDSVTIVSVASAVGQ-LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK-----  274 (680)
Q Consensus       201 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----  274 (680)
                      ++.+.+. .+..-...+-.++.. .++ +.+..++..    .+..+..+...+.+.|.+.|+.++|.++++++..     
T Consensus       207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~  280 (987)
T PRK09782        207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD  280 (987)
T ss_pred             HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence            9999863 334435555556666 355 666666442    3446888899999999999999999999998762     


Q ss_pred             CChhHH-------------------------------------------HH-----------------------------
Q 037256          275 RDLISW-------------------------------------------NS-----------------------------  282 (680)
Q Consensus       275 ~~~~~~-------------------------------------------~~-----------------------------  282 (680)
                      ++..+|                                           ..                             
T Consensus       281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  360 (987)
T PRK09782        281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE  360 (987)
T ss_pred             CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence            100000                                           00                             


Q ss_pred             ---------------------HHHHHHHcCChhHHHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhh--------------
Q 037256          283 ---------------------MLTGYIQNGQASEALLLFDEMQNS-D-CKPNPVTALILVSACTYL--------------  325 (680)
Q Consensus       283 ---------------------li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~--------------  325 (680)
                                           +-....++|+.++|.++|++.... + -.++..-...++..+...              
T Consensus       361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~  440 (987)
T PRK09782        361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK  440 (987)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence                                 000123556677777777665441 1 111111111222222222              


Q ss_pred             -------------------------------------------------cchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          326 -------------------------------------------------GSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       326 -------------------------------------------------g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                                                                       +..++|...+.......  |+......+...
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a  518 (987)
T PRK09782        441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ  518 (987)
T ss_pred             ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence                                                             33344555444444332  333333334445


Q ss_pred             HHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHH
Q 037256          357 YAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       357 y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~  435 (680)
                      +...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+.  .|+.. .+..+.......|++++|.
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence            56788888888888887554555566777777788888999999999888874  35443 3333344555669999999


Q ss_pred             HHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHH-HHHHH-----HHHHHHHHHccCC
Q 037256          436 KCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLL-ACRIH-----GEIAANYLFQLEP  508 (680)
Q Consensus       436 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-a~~~~-----~~~~~~~~~~l~p  508 (680)
                      ..+++..+.  .|+...|..+..++.+.|++++|+..+++. ...|+...+...++ .+...     +...+++++++.|
T Consensus       597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999988865  467888889999999999999999999887 66777655444444 44333     6777889999999


Q ss_pred             CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          509 EHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       509 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      +++..+..++.+|...|++++|+..+++..+..
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999987643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-18  Score=174.96  Aligned_cols=447  Identities=14%  Similarity=0.120  Sum_probs=353.7

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK  157 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~  157 (680)
                      -..|..-..+.|++++|.+.-...-+.. +.+......+-..+.+..+++...+--...++.. +.-..+|+.+.+.+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            4455666778899999998776554432 2233344444445666666666555444444432 3456788999999999


Q ss_pred             cCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhccCChHHHHHH
Q 037256          158 CGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVA-SAVGQLGDVLKAQAV  233 (680)
Q Consensus       158 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~  233 (680)
                      .|++++|+.+++.+.+   ..+..|..+..++...|+.+.|.+.|.+.++.  .|+.+...+-+ ...-..|++.+|..-
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            9999999999998764   35679999999999999999999999998874  56655443322 333456889999998


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256          234 HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP  310 (680)
Q Consensus       234 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (680)
                      +.++++.. +.-..+|+.|...+-..|++..|..-|++..+-|   ...|-.|...|-..+.+++|+..+.+....  +|
T Consensus       207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp  283 (966)
T KOG4626|consen  207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP  283 (966)
T ss_pred             HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence            88887764 2345678889999999999999999999987644   357888999999999999999999888764  55


Q ss_pred             C-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHH
Q 037256          311 N-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIA  388 (680)
Q Consensus       311 ~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~  388 (680)
                      + ...+..+...|...|.++.|...+++.+... +.-...|+.|..++-..|++.+|.+.+.+.....|+ ..+.+.|..
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            4 5678888888899999999999999998765 344678999999999999999999999998666665 678899999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC-hHHHHHHHHHHHhcCCH
Q 037256          389 GYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-VKHYACMVDMLGRAGCL  466 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~  466 (680)
                      .|...|.+++|..+|....+  +.|... .++.|...|-+.|++++|...+++..+  |.|+ ...|+.|...|-..|+.
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence            99999999999999999988  888865 789999999999999999999999886  5676 56789999999999999


Q ss_pred             HHHHHHHHhC-CCCCCH-hHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 037256          467 YEAFDMIKQM-PLPPND-SVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLRED  536 (680)
Q Consensus       467 ~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  536 (680)
                      +.|.+.+.+. .+.|.- ...+.|-+.++..     |....+..+.++|+-+.+|..++..+--..+|.+-.+.+++
T Consensus       439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k  515 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK  515 (966)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence            9999999886 677764 3555666666655     67788899999999999999998887777777764433333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=3.3e-19  Score=187.80  Aligned_cols=302  Identities=12%  Similarity=0.097  Sum_probs=170.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 037256           81 MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD---SYVQAALVDMYAK  157 (680)
Q Consensus        81 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~~~~  157 (680)
                      ....+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+++.+..++   ...+..+...|.+
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34445667778888888888877532 2444666677777777777777777777766432211   2345666666666


Q ss_pred             cCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 037256          158 CGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVH  234 (680)
Q Consensus       158 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  234 (680)
                      .|++++|.++|+++.+   .+..+++.++..+.+.|++++|++.++.+.+.+..++...                     
T Consensus       120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------  178 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------  178 (389)
T ss_pred             CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence            7777777777666643   3445666666666666666666666666655432111100                     


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 037256          235 GYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN  311 (680)
Q Consensus       235 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  311 (680)
                                ....+..+...+.+.|++++|...|+++.+   .+...+..+...|.+.|++++|.++|+++.+.+....
T Consensus       179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence                      011233455556666666666666666543   2344566666777777777777777777765421111


Q ss_pred             HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256          312 PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG  391 (680)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~  391 (680)
                      ..++..+..++...|++++|.+.++.+.+..  |+...+..++..|.+.|++++|.++|+++....|+..+++.++..+.
T Consensus       249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            2334444455555555555555555544432  23333355555555555555555555555444555555555555444


Q ss_pred             h---cCChHHHHHHHHHHHHcCCCCCHH
Q 037256          392 M---HGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       392 ~---~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      .   .|+.++++.++++|.+.+++|++.
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            2   335555555555555555544444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=3.6e-16  Score=176.86  Aligned_cols=489  Identities=10%  Similarity=0.006  Sum_probs=340.1

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCC------
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGIS------  107 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------  107 (680)
                      ++.+...|...|.+ .      |++++|+..+++.....|+...|..++..+   +++.+|..+|+++....+.      
T Consensus        77 n~~~~~~LA~~yl~-~------g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~  146 (987)
T PRK09782         77 NIPLTLYLAEAYRH-F------GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPT  146 (987)
T ss_pred             CHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHH
Confidence            77788888888888 7      999999999999998888544444434333   7788888888887654321      


Q ss_pred             ------------------------------C--CcccHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037256          108 ------------------------------S--NSYTFPFV-LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDM  154 (680)
Q Consensus       108 ------------------------------p--~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~  154 (680)
                                                    |  +..+.... .+.+...++++++..++..+.+.+ +.+......|-.+
T Consensus       147 ~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~a  225 (987)
T PRK09782        147 LRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDV  225 (987)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence                                          1  12222222 455666777777888888887776 3334445556666


Q ss_pred             HHh-cCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC-CCHhHHHHH---------------
Q 037256          155 YAK-CGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL-SDSVTIVSV---------------  217 (680)
Q Consensus       155 ~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l---------------  217 (680)
                      |.. .++ ++|..+++.....|...+..+...|.+.|+.++|.++++++...-.. |...++...               
T Consensus       226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~  304 (987)
T PRK09782        226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY  304 (987)
T ss_pred             HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence            666 355 77777766544557778888888899999999998888887532111 111110000               


Q ss_pred             ---------------HHH--------------------------------------------------------------
Q 037256          218 ---------------ASA--------------------------------------------------------------  220 (680)
Q Consensus       218 ---------------l~~--------------------------------------------------------------  220 (680)
                                     +..                                                              
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~  384 (987)
T PRK09782        305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW  384 (987)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence                           011                                                              


Q ss_pred             -HhccCChHHHHHHHHHHHHc-c-CCCChhHHHHHHHHHHhcCC---HHHHHHH-------------------------H
Q 037256          221 -VGQLGDVLKAQAVHGYAICN-A-FLEDLCIQNSIVAMYARCGN---VEKARLV-------------------------F  269 (680)
Q Consensus       221 -~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~---~~~A~~~-------------------------f  269 (680)
                       ....|+.++|.+++...... + -..+....+-|+..|.+.+.   ..++..+                         +
T Consensus       385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (987)
T PRK09782        385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI  464 (987)
T ss_pred             HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence             11223344444444444331 1 11233455577778877766   2223222                         1


Q ss_pred             HhcCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 037256          270 DMMEK---R--DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMK  344 (680)
Q Consensus       270 ~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~  344 (680)
                      .....   +  +...|..+..++.. ++.++|+..+.+....  .|+......+..++...|++++|...++.+...  +
T Consensus       465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~  539 (987)
T PRK09782        465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D  539 (987)
T ss_pred             HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence            11111   2  55667777777776 7888999988887765  466655444555567899999999999987654  3


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256          345 IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS  423 (680)
Q Consensus       345 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  423 (680)
                      |+...+..+...+.+.|++++|.+.|++.....|+. ..+..+.......|++++|+..+++..+  ..|+...+..+..
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~  617 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARAT  617 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            444556677888999999999999999985555443 2333333444556999999999999998  6788788999999


Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHH-----H
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND-SVWGALLLACRIH-----G  496 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~-----~  496 (680)
                      ++.+.|++++|...+++..... +.+...+..+...+...|++++|++.+++. ...|+. ..+..+-.++...     +
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999864 456678888889999999999999999987 556654 4555565555544     7


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      +..++++++++|++.......+++..+..+++.|.+-++..-.-++
T Consensus       697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            8889999999999999999999999999999999998887766544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=3.8e-18  Score=171.22  Aligned_cols=424  Identities=12%  Similarity=0.121  Sum_probs=337.7

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |++.+|.+--.-.-++.| +....-.+-..+.+..+++.....-....+.. +--..+|..+.+.+...|+++.|..++.
T Consensus        62 gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~  140 (966)
T KOG4626|consen   62 GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYR  140 (966)
T ss_pred             cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            888888876665555555 22222223344555555555444333333332 2256789999999999999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh--hH-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDL--VS-WTVMITAYEQAEKPEEALILFQKTQQEGLLSD-  210 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-  210 (680)
                      .+++.. +.....|..+..++...|+.+.|...|.+..+-|+  .. .+-+...+-..|+.++|...|.+..+.  .|. 
T Consensus       141 ~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~f  217 (966)
T KOG4626|consen  141 AAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCF  217 (966)
T ss_pred             HHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCce
Confidence            999875 34577889999999999999999999988775444  32 233444455579999999999988775  333 


Q ss_pred             HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 037256          211 SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGY  287 (680)
Q Consensus       211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~  287 (680)
                      .+.|+.+...+-..|+...|.+-|+++++.. +.-...|-.|.+.|...+.++.|...+.+...   ...+.+..|...|
T Consensus       218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY  296 (966)
T KOG4626|consen  218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY  296 (966)
T ss_pred             eeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence            4567888888889999999999999998864 22345677899999999999999999987653   3567788888889


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH
Q 037256          288 IQNGQASEALLLFDEMQNSDCKPN-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA  366 (680)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A  366 (680)
                      -.+|..+-|+..+++..+.  .|+ ...|+.+..++-..|+..+|.+.+...+... +......+.|...|...|.+++|
T Consensus       297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence            9999999999999999875  555 6789999999999999999999999998875 45677888899999999999999


Q ss_pred             HHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          367 ENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       367 ~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..+|.......|. ....|.|...|-+.|+.++|+..+++.++  ++|+.. .|+.+-..|-..|+++.|.+.+.+.+..
T Consensus       374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            9999998666666 45789999999999999999999999999  999975 8999999999999999999999998864


Q ss_pred             CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHH
Q 037256          445 SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS-VWGALLLA  491 (680)
Q Consensus       445 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a  491 (680)
                        .|. .+..+.|...|-..|++.+|++-+++. .++||.. .+-.++.+
T Consensus       452 --nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  452 --NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             --CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence              454 567888999999999999999999886 7888754 34444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=1e-18  Score=184.09  Aligned_cols=292  Identities=12%  Similarity=0.080  Sum_probs=139.3

Q ss_pred             HhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhccCChHH
Q 037256          156 AKCGQTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD---SVTIVSVASAVGQLGDVLK  229 (680)
Q Consensus       156 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~  229 (680)
                      ...|++++|...|.++.+.   +..+|..+...+.+.|++++|+.+++.+...+..++   ...+..+...+...|+++.
T Consensus        46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            3444455555555444321   223444455555555555555555555444321111   1223333333344444444


Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCChhHHHHHHH
Q 037256          230 AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRD--------LISWNSMLTGYIQNGQASEALLLFD  301 (680)
Q Consensus       230 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~  301 (680)
                      |..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+        ...|..+...+.+.|++++|...|+
T Consensus       126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  204 (389)
T PRK11788        126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK  204 (389)
T ss_pred             HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            444444443321 2233344444444555555555555444443211        1123344555556666666666666


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHh
Q 037256          302 EMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVS  381 (680)
Q Consensus       302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~  381 (680)
                      ++.+.. +.+...+..+...+...|++++|.++++.+.+.+......+++.++.+|.+.|++++|.+.++++....|+..
T Consensus       205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            665432 2223344445555555556666665555555443222234455555555555566666555555543344444


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcChH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH---AGLIDEGRKCFADMTKLSVKPEVK  451 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~~~  451 (680)
                      .+..++..+.+.|++++|..+++++.+  ..|+..++..++..+..   .|+.+++..++++|.+.++.|++.
T Consensus       284 ~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        284 LLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            445555555555555556555555555  34555555555544432   335555555555555554444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=2e-16  Score=175.72  Aligned_cols=410  Identities=12%  Similarity=-0.010  Sum_probs=291.6

Q ss_pred             CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD  135 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  135 (680)
                      |+++.|++.|+......|+...|..+..+|.+.|++++|++.+++..+..+. +...+..+..++...|++++|..-+..
T Consensus       141 ~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~  219 (615)
T TIGR00990       141 KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTA  219 (615)
T ss_pred             CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999888888888888999999999999999999998876422 455788888889999999999888876


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH-hHH
Q 037256          136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS-VTI  214 (680)
Q Consensus       136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~  214 (680)
                      +...+-..+.. ...++.-+.+......+...++.-+ .+..++..+.. |........+..-+..-.+  ..++. ..+
T Consensus       220 ~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  294 (615)
T TIGR00990       220 SCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQ  294 (615)
T ss_pred             HHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccch
Confidence            65543222222 1222222222222344444444432 23334443333 3232223322222221111  11111 111


Q ss_pred             HHHHHH---HhccCChHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHH
Q 037256          215 VSVASA---VGQLGDVLKAQAVHGYAICNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTG  286 (680)
Q Consensus       215 ~~ll~~---~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~  286 (680)
                      ..+...   ....+++++|.+.++.+++.+  .+.....++.+...|...|++++|...|++..+  | +..+|..+...
T Consensus       295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~  374 (615)
T TIGR00990       295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM  374 (615)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            111111   123467889999999998865  233456788888899999999999999998865  3 35678888889


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH
Q 037256          287 YIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA  366 (680)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A  366 (680)
                      +...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|
T Consensus       375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999998763 4456788888888999999999999999998875 45677788889999999999999


Q ss_pred             HHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H-------HHHHHHHHHccCCHHHHHHH
Q 037256          367 ENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-T-------FTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       367 ~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t-------~~~ll~a~~~~g~~~~a~~~  437 (680)
                      ...|++.....| +...|+.+...+...|++++|++.|++..+  +.|+.. +       +...+..+...|++++|.++
T Consensus       453 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~  530 (615)
T TIGR00990       453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENL  530 (615)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999998865555 477889999999999999999999999988  444321 1       12222233446999999999


Q ss_pred             HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +++..+.. +.+...+..+...+.+.|++++|.++|++.
T Consensus       531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A  568 (615)
T TIGR00990       531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERA  568 (615)
T ss_pred             HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99987754 334456888999999999999999999876

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=2.6e-16  Score=174.84  Aligned_cols=413  Identities=12%  Similarity=-0.002  Sum_probs=258.2

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC
Q 037256          115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEK  191 (680)
Q Consensus       115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~  191 (680)
                      .....+.+.|++++|...|...++.  .|+...|..+..+|.+.|++++|++.++...+   .+...|..+..+|...|+
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            4445566677777777777777664  45666777777777777787777777776543   245567777777788888


Q ss_pred             ccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM  271 (680)
Q Consensus       192 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~  271 (680)
                      +++|+..|......+-. +......++.....    ..+........+.. +++...+..+.. |......+.+..-++.
T Consensus       210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  282 (615)
T TIGR00990       210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED  282 (615)
T ss_pred             HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence            88887777655443211 11111111111111    11122222222221 222222222222 2211111111111111


Q ss_pred             cCCCCh---hHHHHHHHH---HHHcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC
Q 037256          272 MEKRDL---ISWNSMLTG---YIQNGQASEALLLFDEMQNSD-CKP-NPVTALILVSACTYLGSRQLGRKFHGYIINSNM  343 (680)
Q Consensus       272 m~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~  343 (680)
                      ..+.+.   ..+..+...   ....+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++..++.. 
T Consensus       283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-  361 (615)
T TIGR00990       283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-  361 (615)
T ss_pred             ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence            111111   111111111   123467888888888887654 233 33456666666777888888888888887654 


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSI  421 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l  421 (680)
                      +.+...+..+...|...|++++|...|++.....| +...|..+...|...|++++|+..|++..+  +.|+. ..+..+
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~l  439 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQL  439 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHH
Confidence            33456777788888888888888888888755544 467788888888888889999888888887  55654 466667


Q ss_pred             HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hHHH------HHHHHHH
Q 037256          422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND-SVWG------ALLLACR  493 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~------~ll~a~~  493 (680)
                      ...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++. .+.|+. ..+.      .....+.
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~  518 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF  518 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence            777888888999988888887642 445677888888888889999998888875 444431 1111      1111111


Q ss_pred             H---H---HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          494 I---H---GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       494 ~---~---~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      .   .   +...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus       519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            1   1   667778888899999889999999999999999999999998753

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=7e-16  Score=174.56  Aligned_cols=394  Identities=11%  Similarity=0.039  Sum_probs=216.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK  157 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~  157 (680)
                      -.-.+......|+.++|+++|.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+..
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~   95 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD   95 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3444555566667777776666665421 2233345566666666666666666666666553 2334445555555566


Q ss_pred             cCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 037256          158 CGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVH  234 (680)
Q Consensus       158 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  234 (680)
                      .|+.++|...+++...  | +.. |..+...+...|++++|+..++++.+..  |                         
T Consensus        96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P-------------------------  147 (765)
T PRK10049         96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--P-------------------------  147 (765)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-------------------------
Confidence            6666666666555432  1 333 5555555555555666655555555432  2                         


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHH-----HHcCCh---hHHHH
Q 037256          235 GYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLI--------SWNSMLTGY-----IQNGQA---SEALL  298 (680)
Q Consensus       235 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~  298 (680)
                               .+...+..+...+.+.|..+.|.+.++.... ++.        ....++...     ...+++   ++|++
T Consensus       148 ---------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~  217 (765)
T PRK10049        148 ---------QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA  217 (765)
T ss_pred             ---------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence                     2233333344455555555555555555443 111        111111111     112223   66777


Q ss_pred             HHHHHHhC-CCCCCHh-hHH----HHHHHHhhhcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          299 LFDEMQNS-DCKPNPV-TAL----ILVSACTYLGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       299 ~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      .++.+.+. ...|+.. .+.    ..+.++...|+.++|...++.+.+.+.+ |+ .....+..+|...|++++|+..|+
T Consensus       218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~  296 (765)
T PRK10049        218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILT  296 (765)
T ss_pred             HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHH
Confidence            77777643 1222221 111    1123344556777777777777665422 21 112224566777777777777777


Q ss_pred             hcCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHccCCHH
Q 037256          372 DIHPSERN-----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-----------VKPDH---ITFTSILSACSHAGLID  432 (680)
Q Consensus       372 ~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~  432 (680)
                      ++....|.     ...+..+..++...|++++|.++++++....           -.|+.   ..+..+...+...|+++
T Consensus       297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~  376 (765)
T PRK10049        297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP  376 (765)
T ss_pred             HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence            76433332     2334555556677777777777777776631           01221   12334455666677777


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTG  512 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~  512 (680)
                      +|++.++++.... +.+...+..+...+...|++++|++.+++                           +++++|+++.
T Consensus       377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~---------------------------al~l~Pd~~~  428 (765)
T PRK10049        377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKK---------------------------AEVLEPRNIN  428 (765)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------------------------HHhhCCCChH
Confidence            7777777766542 34455666667777777777777666655                           4456666666


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          513 YFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       513 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      .+..++..+...|+|++|+++++.+.+.
T Consensus       429 l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        429 LEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7777777777777777777777776653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=4e-16  Score=172.76  Aligned_cols=347  Identities=11%  Similarity=0.004  Sum_probs=227.4

Q ss_pred             CChHHHHHHhhhccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS----YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV  131 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  131 (680)
                      .+++.---.|...++..-    +..-.-.++..+.+.|++++|+.+++......+. +...+..++.+....|++++|.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~   97 (656)
T PRK15174         19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ   97 (656)
T ss_pred             hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence            555555556666554411    2223345667788889999999999888876444 34445555566677889999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 037256          132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL  208 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  208 (680)
                      .++.+++.. +.+...+..+...+...|++++|...|++...   .+...|..+...+.+.|++++|...++.+......
T Consensus        98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~  176 (656)
T PRK15174         98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP  176 (656)
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence            999888875 44566777788888888999999888887653   35667888888888889999888888877665322


Q ss_pred             CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 037256          209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLT  285 (680)
Q Consensus       209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~  285 (680)
                       +...+.. +..+...|++++|...+..+++....++......+...+.+.|++++|...|++..+   .+...+..+..
T Consensus       177 -~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~  254 (656)
T PRK15174        177 -RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL  254 (656)
T ss_pred             -CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence             2222222 234666788888888877776654334444445556667777777777777777654   24566666777


Q ss_pred             HHHHcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256          286 GYIQNGQASE----ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG  361 (680)
Q Consensus       286 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g  361 (680)
                      .|.+.|++++    |+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+...+..+|.+.|
T Consensus       255 ~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G  332 (656)
T PRK15174        255 AYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG  332 (656)
T ss_pred             HHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            7777777765    677777776542 2234455666666666666666666666666554 334455555666666666


Q ss_pred             CHHHHHHHHhhcCCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          362 DLDTAENMFNDIHPSERNVSS-WNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       362 ~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ++++|.+.|+++....|+... +..+..++...|+.++|.+.|++..+
T Consensus       333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666444444332 23334556666666666666666665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=9.8e-16  Score=169.69  Aligned_cols=317  Identities=13%  Similarity=0.052  Sum_probs=171.6

Q ss_pred             HHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH
Q 037256          152 VDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL  228 (680)
Q Consensus       152 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  228 (680)
                      +..+.+.|++++|+.+++....   .+...+..++.+....|++++|++.|+++.... +.+...+..+...+...|+.+
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~  127 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA  127 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence            3444556666666666655432   233444455555556666666666666665542 223344555555556666666


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      +|...+..+++.. +.+...+..+...|...|+.++|...++.+..  | +...+..+ ..+.+.|++++|...++++.+
T Consensus       128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~  205 (656)
T PRK15174        128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLP  205 (656)
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence            6666666665542 33444555566666666666666666655432  2 22222222 235556666666666666554


Q ss_pred             CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH----HHHHHhhcCCCCCC-H
Q 037256          306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT----AENMFNDIHPSERN-V  380 (680)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~f~~~~~~~~~-~  380 (680)
                      ....++......+..++...|++++|...+..+.+.. +.+...+..+..+|.+.|++++    |...|++.....|+ .
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~  284 (656)
T PRK15174        206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV  284 (656)
T ss_pred             cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence            4322333333344455556666666666666665543 3345555556666666666654    56666665444333 4


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh-HHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV-KHYACMVD  458 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~  458 (680)
                      ..+..+...+...|++++|+..+++..+  ..|+.. .+..+..++...|++++|...|+.+.+.+  |+. ..+..+..
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~  360 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA  360 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence            4556666666666666666666666665  344432 44445555666666666666666655432  222 22233345


Q ss_pred             HHHhcCCHHHHHHHHHhC
Q 037256          459 MLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       459 ~~~~~g~~~~A~~~~~~m  476 (680)
                      ++...|+.++|.+.+++.
T Consensus       361 al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            556666666666666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=7.1e-16  Score=174.47  Aligned_cols=407  Identities=10%  Similarity=-0.008  Sum_probs=245.4

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      ++-..+-.+..... .      |+.++|++++.......| +...+..+...+...|++++|.++|++..+.. +.+...
T Consensus        14 ~~~~~~d~~~ia~~-~------g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a   85 (765)
T PRK10049         14 SNNQIADWLQIALW-A------GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDY   85 (765)
T ss_pred             CHHHHHHHHHHHHH-c------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            55556666777777 7      999999999999876444 55569999999999999999999999988763 224556


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhC
Q 037256          113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQA  189 (680)
Q Consensus       113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~  189 (680)
                      +..+...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|+..++++..  | +...+..+...+...
T Consensus        86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049         86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            6777788889999999999999999874 44566 88888999999999999999998864  3 556677788889999


Q ss_pred             CCccHHHHHHHHHHHcCCCCCHh------HHHHHHHHHhcc-----CCh---HHHHHHHHHHHHc-cCCCChhHHHHHHH
Q 037256          190 EKPEEALILFQKTQQEGLLSDSV------TIVSVASAVGQL-----GDV---LKAQAVHGYAICN-AFLEDLCIQNSIVA  254 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~-----~~~---~~a~~~~~~~~~~-g~~~~~~~~~~Li~  254 (680)
                      +..++|++.++....   .|+..      ....+++.....     +++   ++|.+.++.+++. ...|+.....    
T Consensus       164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~----  236 (765)
T PRK10049        164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY----  236 (765)
T ss_pred             CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH----
Confidence            999999999886653   23310      011111111111     112   3333344433322 1111110000    


Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhhhcchHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK-PNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                                            .......+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|..
T Consensus       237 ----------------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~  293 (765)
T PRK10049        237 ----------------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS  293 (765)
T ss_pred             ----------------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence                                  000001122233445555555555555544321 221 11113444555555555555


Q ss_pred             HHHHHHHcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-------------C---HhHHHHHHHHHHhcC
Q 037256          334 FHGYIINSNMKI---DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-------------N---VSSWNVLIAGYGMHG  394 (680)
Q Consensus       334 i~~~~~~~~~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------------~---~~~~~~li~~~~~~g  394 (680)
                      .++.+.+.....   .......+..++.+.|++++|.++++.+....|             +   ...+..+...+...|
T Consensus       294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g  373 (765)
T PRK10049        294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN  373 (765)
T ss_pred             HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence            555554432110   122333444455666666666666665533322             1   123344555666677


Q ss_pred             ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256          395 HGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI  473 (680)
Q Consensus       395 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  473 (680)
                      +.++|+++++++...  .|+. ..+..+...+...|++++|++.+++..... +-+...+..++..+.+.|++++|+.++
T Consensus       374 ~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        374 DLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            777777777777663  3433 356666666677777777777777666542 222445555555666777777777777


Q ss_pred             HhC-CCCCCHh
Q 037256          474 KQM-PLPPNDS  483 (680)
Q Consensus       474 ~~m-~~~p~~~  483 (680)
                      +++ ...|+..
T Consensus       451 ~~ll~~~Pd~~  461 (765)
T PRK10049        451 DDVVAREPQDP  461 (765)
T ss_pred             HHHHHhCCCCH
Confidence            665 3344433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=1.2e-14  Score=161.27  Aligned_cols=430  Identities=12%  Similarity=0.064  Sum_probs=287.3

Q ss_pred             CChHHHHHHhhhccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHH--HHHHhccCChHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSF-LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT-FPFV--LKACASNSLILEGKV  131 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l--l~~~~~~~~~~~a~~  131 (680)
                      |+++.|+..|++..+..|+.. ....++..+...|+.++|+..+++..    .|+... +..+  ...+...|++++|.+
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aie  123 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALA  123 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999888642 33388888999999999999999987    333332 3333  446778899999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHh--CCCccHHHHHHHHHHHcCCCC
Q 037256          132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQ--AEKPEEALILFQKTQQEGLLS  209 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p  209 (680)
                      +++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|..  .++..+|++.++++.+.. +-
T Consensus       124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~  201 (822)
T PRK14574        124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT  201 (822)
T ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence            999999886 44567777888899999999999999999876544433334444444  556656999999998873 33


Q ss_pred             CHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 037256          210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQ  289 (680)
Q Consensus       210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~  289 (680)
                      +...+.....++.+.|-...|.++...      .|+.++-..+...     +.+.|.+..+....++.          ..
T Consensus       202 n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~~  260 (822)
T PRK14574        202 SEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------SE  260 (822)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc----------cc
Confidence            455566777777777777777765543      2222211111100     11112222211110000          00


Q ss_pred             cCC---hhHHHHHHHHHHhC-CCCCCH-h----hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256          290 NGQ---ASEALLLFDEMQNS-DCKPNP-V----TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC  360 (680)
Q Consensus       290 ~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~  360 (680)
                      .++   .+.|+.-++.+... +-.|.. .    ...--+-++...++..++.+.++.+...+.+....+--++.++|...
T Consensus       261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~  340 (822)
T PRK14574        261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR  340 (822)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence            111   34455555555431 222322 1    11233456777888888888888888888776677888889999999


Q ss_pred             CCHHHHHHHHhhcCCCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------CCCCHH-HHH
Q 037256          361 GDLDTAENMFNDIHPSE-------RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-------------VKPDHI-TFT  419 (680)
Q Consensus       361 g~~~~A~~~f~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~-t~~  419 (680)
                      +++++|+.+|+.+....       ++......|.-+|...+++++|..+++++.+.-             ..||-. .+.
T Consensus       341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~  420 (822)
T PRK14574        341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT  420 (822)
T ss_pred             CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence            99999999999874332       123335678888899999999999999998731             112333 334


Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHH-HHHHHH--
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALL-LACRIH--  495 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~a~~~~--  495 (680)
                      .++..+...|++.+|++.++.+.... +-|......+.+.+...|++.+|++.++.. .+.|+......-. .+....  
T Consensus       421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e  499 (822)
T PRK14574        421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE  499 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence            45667889999999999999997764 668888899999999999999999999776 4556543322211 111111  


Q ss_pred             ---HHHHHHHHHccCCCCCch
Q 037256          496 ---GEIAANYLFQLEPEHTGY  513 (680)
Q Consensus       496 ---~~~~~~~~~~l~p~~~~~  513 (680)
                         ++...+.+++..|+++.+
T Consensus       500 ~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        500 WHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HHHHHHHHHHHHhhCCCchhH
Confidence               556667777778877643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.3e-13  Score=146.49  Aligned_cols=476  Identities=10%  Similarity=0.054  Sum_probs=339.8

Q ss_pred             hHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHhccCChHHHHHHH
Q 037256           58 PNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRSG--ISSNSYTFPFVLKACASNSLILEGKVVH  133 (680)
Q Consensus        58 ~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~  133 (680)
                      ++.|.+.|....+..|+.+. -.+..++  ...+++..|+.+|.......  .+||..  ..+-..+.+.++.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence            59999999999998885432 2344444  34689999999999976643  344443  22335567889999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhc---CChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC
Q 037256          134 GDIIRTGFLSDSYVQAALVDMYAKC---GQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL  207 (680)
Q Consensus       134 ~~~~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  207 (680)
                      ...++... .++..+-.|.-.-...   ..+..+..++...-   ..|++..+.|...|.-.|++..+..+..-+.....
T Consensus       223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            99987642 2333333332222222   23445555555442   35889999999999999999999999998876531


Q ss_pred             C--CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 037256          208 L--SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNS  282 (680)
Q Consensus       208 ~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~  282 (680)
                      .  .-...|-.+.+++-..|++++|..+|-+..+.....-+..+-.|..+|.+.|+++.|...|+.+.+   .+..+...
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i  381 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI  381 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence            1  123457788999999999999999998888765333344456788999999999999999999875   24556666


Q ss_pred             HHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHH----HHcCCCCchHHHHHHH
Q 037256          283 MLTGYIQNG----QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYI----INSNMKIDATLRNAVM  354 (680)
Q Consensus       283 li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~----~~~~~~~~~~~~~~li  354 (680)
                      |...|+..+    ..+.|..++.+..+.- +-|...|..+...+-. ++.......+..+    ...+-.+.+.+.|.+.
T Consensus       382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva  459 (1018)
T KOG2002|consen  382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVA  459 (1018)
T ss_pred             HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence            667777665    4577777777776543 4456666666555543 3333335555443    3455568889999999


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCC-----CCCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 037256          355 DMYAKCGDLDTAENMFNDIHPS-----ERNV------SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSIL  422 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~-----~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll  422 (680)
                      ..+...|++++|...|......     .++.      .+--.+...+-..++.+.|.+.|..+..  ..|+.+ .|..++
T Consensus       460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~  537 (1018)
T KOG2002|consen  460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLG  537 (1018)
T ss_pred             HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhh
Confidence            9999999999999999987433     2222      2223355566677899999999999998  568776 565555


Q ss_pred             HHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHHH---
Q 037256          423 SACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----PLPPNDSVWGALLLACRIH---  495 (680)
Q Consensus       423 ~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~---  495 (680)
                      ...-..+...+|...+....... ..++..++.+.+.+.+...+..|.+-|+..    ...+|+++.-+|-+-|...   
T Consensus       538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~  616 (1018)
T KOG2002|consen  538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN  616 (1018)
T ss_pred             HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence            33345678889999999888752 455566666777888888888787755443    3447888877777766543   


Q ss_pred             --------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          496 --------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       496 --------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                                    |...+.+++..+|.|.-+-..++-+++..|+|.+|..+|.+.++...
T Consensus       617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~  677 (1018)
T KOG2002|consen  617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS  677 (1018)
T ss_pred             cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence                          34445677889999988888999999999999999999999998655

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=5.8e-14  Score=135.69  Aligned_cols=262  Identities=18%  Similarity=0.185  Sum_probs=165.8

Q ss_pred             HHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 037256           63 SLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFL  142 (680)
Q Consensus        63 ~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  142 (680)
                      -+|+..|+   ...++..||.++++-...+.|.++|++......+.+..+||.+|.+..-    ..++.+..+|+.....
T Consensus       198 L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  198 LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT  270 (625)
T ss_pred             HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence            44444443   4567899999999999999999999999888888899999999987543    3348889999999999


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhc----CC----CCChhHHHHHHHHHHhCCCccH-HHHHHHHHHH----cCCC-
Q 037256          143 SDSYVQAALVDMYAKCGQTDDGCKVFDE----MS----VRDLVSWTVMITAYEQAEKPEE-ALILFQKTQQ----EGLL-  208 (680)
Q Consensus       143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~----~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~-  208 (680)
                      ||..++|+++.+.++.|+++.|++.+-+    |+    +|...+|..+|..+.+.+++.+ |..+..+...    +.++ 
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp  350 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP  350 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence            9999999999999999998887765322    21    3444455555555554444422 2222222221    1111 


Q ss_pred             ---CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 037256          209 ---SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLT  285 (680)
Q Consensus       209 ---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~  285 (680)
                         .|...|...+..|.+..|.+.|.++++...... .            |...|..      +     ...+-|..+..
T Consensus       351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~-----~~~fYyr~~~~  406 (625)
T KOG4422|consen  351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q-----HRNFYYRKFFD  406 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H-----HHHHHHHHHHH
Confidence               122334444444554455555544444332110 0            0000000      0     11233555666


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256          286 GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD  355 (680)
Q Consensus       286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~  355 (680)
                      ..++....+.-+..|+.|.-+-+-|+..+...++++....+.++...+++..++..|...+.....-++.
T Consensus       407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~  476 (625)
T KOG4422|consen  407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM  476 (625)
T ss_pred             HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            7777778888888888888777788888888888888888888888888888877775444444333333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.73  E-value=8.7e-14  Score=147.73  Aligned_cols=490  Identities=16%  Similarity=0.164  Sum_probs=254.6

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--CCc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGIS--SNS  110 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~  110 (680)
                      |+...++++.++.- -..+-....+..+...+...-...| |++..|.|.+-|.-.|+++.++.+...+......  .-.
T Consensus       229 dp~~v~alv~L~~~-~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a  307 (1018)
T KOG2002|consen  229 DPTCVSALVALGEV-DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA  307 (1018)
T ss_pred             ChhhHHHHHHHHHH-HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence            55555555554332 2222223445555555555544433 5666666666666667777776666666543210  112


Q ss_pred             ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHH
Q 037256          111 YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITA  185 (680)
Q Consensus       111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~  185 (680)
                      ..|-.+.+++-..|++++|...|.+..+..  +|.+  .+-.|..+|.+.|+++.|...|+.+..   .+..+-..|...
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            335566666666777777777666555543  3332  233456667777777777666666542   233444455555


Q ss_pred             HHhCC----CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHH----HHccCCCChhHHHHHHHHHH
Q 037256          186 YEQAE----KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA----ICNAFLEDLCIQNSIVAMYA  257 (680)
Q Consensus       186 ~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~  257 (680)
                      |+..+    ..+.|..++.+..+.- +.|...|..+...+-. ++.......+..+    ...+..+.+.+.|.+...+.
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF  463 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence            55543    2344444444443321 2344444444443332 3333334443332    23444455666666666666


Q ss_pred             hcCCHHHHHHHHHhcCCC-------Ch------h-HHHHHHHHHHHcC--------------------------------
Q 037256          258 RCGNVEKARLVFDMMEKR-------DL------I-SWNSMLTGYIQNG--------------------------------  291 (680)
Q Consensus       258 ~~g~~~~A~~~f~~m~~~-------~~------~-~~~~li~~~~~~g--------------------------------  291 (680)
                      ..|++++|...|+.....       |.      . -|| +...+-..+                                
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD  542 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence            666666666666654321       11      0 111 222222333                                


Q ss_pred             --ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHH---------
Q 037256          292 --QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN-MKIDATLRNAVMDMYAK---------  359 (680)
Q Consensus       292 --~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k---------  359 (680)
                        ...+|...+++..... ..++..++.+...+.....+..|..-+..+.+.- ..+|+.+.-+|.+.|..         
T Consensus       543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~  621 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP  621 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence              4445555555544321 2222222223333444444444444444333321 12455555555554432         


Q ss_pred             ---cCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037256          360 ---CGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       360 ---~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  435 (680)
                         .+..++|.++|.++... ..|..+-|-+.-.++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|.
T Consensus       622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI  700 (1018)
T KOG2002|consen  622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI  700 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence               23456677777666444 34566666677777777777777777777776532 23445666777777777777777


Q ss_pred             HHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhH--HHHHHHHHHHHHHHHHHHHHccCCCCC
Q 037256          436 KCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSV--WGALLLACRIHGEIAANYLFQLEPEHT  511 (680)
Q Consensus       436 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~--~~~ll~a~~~~~~~~~~~~~~l~p~~~  511 (680)
                      ++|+...+. .-.-+..+..+|..++.++|.+.+|.+..... ...|...+  +|..+-.     .+..+..++..+.  
T Consensus       701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~-----kkla~s~lr~~k~--  773 (1018)
T KOG2002|consen  701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL-----KKLAESILRLEKR--  773 (1018)
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH-----HHHHHHHHhcccc--
Confidence            777776665 44555666677777777777777776665544 33343222  2221111     1222233333331  


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          512 GYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                          .+=.+....+..++|.++|..|...+-
T Consensus       774 ----t~eev~~a~~~le~a~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  774 ----TLEEVLEAVKELEEARRLFTELSKNGD  800 (1018)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                222334456678999999999987654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=4e-13  Score=130.03  Aligned_cols=411  Identities=13%  Similarity=0.119  Sum_probs=259.0

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKAC--ASNSLILEG-KVVHGDIIRTGFLSDSYVQAAL  151 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L  151 (680)
                      +++=|.|+.. ..+|..+++.-+|+.|++.|+..+...-..|++..  ....++.-+ .+.|-.|.+.|- .+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence            4566776664 45688999999999999999877776666666543  233333322 234445555552 233333   


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256          152 VDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ  231 (680)
Q Consensus       152 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  231 (680)
                           |.|.+.+   ++-+...+...+|.+||.+.++-...+.|.++|++-.....+.+..+|+.++.+.+-.    .++
T Consensus       191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K  258 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK  258 (625)
T ss_pred             -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence                 4566544   4445555677899999999999999999999999999988899999999999876543    348


Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh----cC----CCChhHHHHHHHHHHHcCChhH-HHHHHHH
Q 037256          232 AVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM----ME----KRDLISWNSMLTGYIQNGQASE-ALLLFDE  302 (680)
Q Consensus       232 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~  302 (680)
                      ++..+|+...+.||..|+|+++.+.++.|+++.|.+.+-+    |+    +|...+|..+|..+.+.++..+ |..++.+
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence            8999999999999999999999999999998887654332    22    2455555555555555555432 3333333


Q ss_pred             HHhC----CCC---C-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256          303 MQNS----DCK---P-NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIH  374 (680)
Q Consensus       303 m~~~----g~~---p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~  374 (680)
                      .+..    .++   | |..-|.+.++.|.+..+.+.|.+++..+.... .                         +..|-
T Consensus       339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N-------------------------~~~ig  392 (625)
T KOG4422|consen  339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N-------------------------WKFIG  392 (625)
T ss_pred             HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c-------------------------hhhcC
Confidence            3321    111   1 23344555555555555555555554433211 0                         00000


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          375 PSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       375 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      +......-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....|.++-.-+++..++..|..-+.... 
T Consensus       393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~-  471 (625)
T KOG4422|consen  393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR-  471 (625)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH-
Confidence            0011123455666777777788888888888887767788888888888888888888888888888776533322222 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHh---HHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDS---VWGALLLACRIH----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKW  527 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~---~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~  527 (680)
                                  ++.+.++-.-+..|+..   .+..+..-|...    -+...++..+.+ -.+......+-++.+.|+.
T Consensus       472 ------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~  538 (625)
T KOG4422|consen  472 ------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRT  538 (625)
T ss_pred             ------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchH
Confidence                        22333333333334333   333333333322    112222222211 1234566777788999999


Q ss_pred             hHHHHHHHHHHhCCC
Q 037256          528 REVGKLREDMKNKGL  542 (680)
Q Consensus       528 ~~A~~~~~~m~~~g~  542 (680)
                      .+|.+++....+++-
T Consensus       539 qkA~e~l~l~~~~~~  553 (625)
T KOG4422|consen  539 QKAWEMLGLFLRKHN  553 (625)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999976554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.65  E-value=2.3e-12  Score=143.37  Aligned_cols=417  Identities=11%  Similarity=0.032  Sum_probs=296.7

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh-HHHHH--HHHHHhCCCccHHH
Q 037256          120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLV-SWTVM--ITAYEQAEKPEEAL  196 (680)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~  196 (680)
                      ..+.|+++.|...+.++++......+.++ .++..+...|+.++|+..+++...|+.. .+..+  ...|...|++++|+
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            46889999999999999987532223455 8888899999999999999999876443 34444  55788889999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 037256          197 ILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--  274 (680)
Q Consensus       197 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--  274 (680)
                      ++|+++.+.. +-|...+..++..+...++.++|.+.+..+.+.  .|+...+..++..+...++..+|.+.++++.+  
T Consensus       123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            9999998874 334566667788889999999999999998876  34455555555566556777679999999875  


Q ss_pred             C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhH------HHHHHHH-h----hhcc---hHHHHHHHHHHH
Q 037256          275 R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTA------LILVSAC-T----YLGS---RQLGRKFHGYII  339 (680)
Q Consensus       275 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-~----~~g~---~~~a~~i~~~~~  339 (680)
                      | +...+..+..+..+.|-...|+++..+-... +.+...-.      ...+.-- .    ...+   .+.+..-++.+.
T Consensus       200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~  278 (822)
T PRK14574        200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL  278 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence            3 5667788889999999999999776652211 11111111      1111111 0    1112   233444444444


Q ss_pred             H-cCC-CCchHH-HHHH---HHHHHHcCCHHHHHHHHhhcCCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 037256          340 N-SNM-KIDATL-RNAV---MDMYAKCGDLDTAENMFNDIHPSER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-  410 (680)
Q Consensus       340 ~-~~~-~~~~~~-~~~l---i~~y~k~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-  410 (680)
                      . .+- ++.... ..+.   +-++.+.|+..++.+.|+.+.....  ...+--++.++|...+++++|+.+|+++.... 
T Consensus       279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~  358 (822)
T PRK14574        279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG  358 (822)
T ss_pred             hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence            3 121 222222 2333   4466788999999999999954432  23355778899999999999999999997643 


Q ss_pred             ----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-----------CcC---hHHHHHHHHHHHhcCCHHHHHHH
Q 037256          411 ----VKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSV-----------KPE---VKHYACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       411 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~  472 (680)
                          ..++......|..++..++++++|..+++.+.+..-           .|+   ...+..++..+...|++.+|++.
T Consensus       359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~  438 (822)
T PRK14574        359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK  438 (822)
T ss_pred             cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                122333457788899999999999999999987311           122   12344567778899999999999


Q ss_pred             HHhC-CCCC-CHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          473 IKQM-PLPP-NDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       473 ~~~m-~~~p-~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ++++ ..-| |...+..+-......     |+..++....++|++..+...++..+...|+|++|.++.+...+.-
T Consensus       439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            9998 3344 455555555555544     7778888888999999999999999999999999999999887753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=1.8e-11  Score=129.58  Aligned_cols=479  Identities=11%  Similarity=0.063  Sum_probs=290.5

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |++++|.+++.++..+.| +...|.+|...|-+.|+.++++..+-..-...++ |...|..+..-..+.|++++|.-.+.
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            999999999999999988 6789999999999999999999887666544322 66788888888899999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----h----HHHHHHHHHHhCCCccHHHHHHHHHHHc-
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDL----V----SWTVMITAYEQAEKPEEALILFQKTQQE-  205 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-  205 (680)
                      ++++.. +++....-.-..+|-+.|+...|..-|.++.+.+.    .    .--..+..|...++-+.|++.+...... 
T Consensus       232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            999986 44444444457889999999999988887754322    1    1222355566667777888877776652 


Q ss_pred             CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHc---------------------------cCCCChhH-HHHHHHHHH
Q 037256          206 GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICN---------------------------AFLEDLCI-QNSIVAMYA  257 (680)
Q Consensus       206 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~Li~~y~  257 (680)
                      +-..+..+++.++..+.+...++.+..........                           +..++..+ ...+--...
T Consensus       311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L  390 (895)
T KOG2076|consen  311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL  390 (895)
T ss_pred             cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence            22334445556666666666666665554444331                           11222223 111111122


Q ss_pred             hcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          258 RCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       258 ~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                      +.+...+++.-|-....    .++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+...+...|..+.|.+
T Consensus       391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e  470 (895)
T KOG2076|consen  391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE  470 (895)
T ss_pred             cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            33344444433332222    24455667777888888888888888887765444456677777777788888888888


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC------------HhHHHHHHHHHHhcCChHHHHH
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN------------VSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      .+..++... +.+..+--.|-..|.+.|+.++|.+++..+.  .||            ...--.....|.+.|+.++=+.
T Consensus       471 ~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~  547 (895)
T KOG2076|consen  471 FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN  547 (895)
T ss_pred             HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            888777654 4455666677777888888888888887762  222            1111112233444455444333


Q ss_pred             HHHHHHHc---------------------------------------------------------------CCCCCH--H
Q 037256          402 FFSQMLEE---------------------------------------------------------------GVKPDH--I  416 (680)
Q Consensus       402 l~~~m~~~---------------------------------------------------------------g~~p~~--~  416 (680)
                      +-.+|+..                                                               |+.-+.  .
T Consensus       548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe  627 (895)
T KOG2076|consen  548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE  627 (895)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence            32222211                                                               000111  1


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhc-CCC-cCh---HHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HhH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKL-SVK-PEV---KHYACMVDMLGRAGCLYEAFDMIKQM----PL--PPN-DSV  484 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~-p~~---~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~  484 (680)
                      .+.-++.+.++.+++++|..+...+... -+. ++.   ..-.+++.+....+++.+|.+.++.|    +.  .|. ...
T Consensus       628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l  707 (895)
T KOG2076|consen  628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL  707 (895)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            2334455566667777777777666655 221 221   22234455555677777777776666    11  221 234


Q ss_pred             HHHHHHHHHHHHHHH-----HHHHHccCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          485 WGALLLACRIHGEIA-----ANYLFQLEPEH-TGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       485 ~~~ll~a~~~~~~~~-----~~~~~~l~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      |+..++...+++.++     ...+....|++ +..+...+......+.|..|...+-..-.
T Consensus       708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~  768 (895)
T KOG2076|consen  708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR  768 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence            554444444443332     22333445555 44455555666677777777775554433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.57  E-value=1.5e-09  Score=110.99  Aligned_cols=495  Identities=11%  Similarity=0.049  Sum_probs=346.1

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      ++-+|.+-+.+           ...++|+.++....+.-| +...|.    +|++..-++.|..++.+.++. ++.+...
T Consensus       379 sv~LWKaAVel-----------E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~I  442 (913)
T KOG0495|consen  379 SVRLWKAAVEL-----------EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREI  442 (913)
T ss_pred             hHHHHHHHHhc-----------cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhH
Confidence            55566655542           455667777776666544 333443    445555667777777777765 5557777


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CC-ChhHHHHH
Q 037256          113 FPFVLKACASNSLILEGKVVHGDII----RTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS-----VR-DLVSWTVM  182 (680)
Q Consensus       113 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~-----~~-~~~~~~~l  182 (680)
                      |.+....=-.+|+.+....+.+.-+    ..|+..+...|-.=...+-+.|..-.+..+.....     +. --.+|+.-
T Consensus       443 Witaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d  522 (913)
T KOG0495|consen  443 WITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD  522 (913)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence            7666666566777777666665433    34656666666555555555565555555544432     11 23477777


Q ss_pred             HHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH
Q 037256          183 ITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV  262 (680)
Q Consensus       183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~  262 (680)
                      ...|.+.+.++-|..+|...++. .+-+...|......--..|..+.-..++..++..- +.....|-....-+-+.|++
T Consensus       523 a~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv  600 (913)
T KOG0495|consen  523 AQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDV  600 (913)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCc
Confidence            78888888888888888777764 23344555555555556677788888888777653 34455566666777778899


Q ss_pred             HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHH
Q 037256          263 EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYII  339 (680)
Q Consensus       263 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~  339 (680)
                      ..|+.++...-+   .+...|-+-+..-..+..+++|..+|.+....  .|+...|.--+..--.++..++|.++++..+
T Consensus       601 ~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  601 PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            999888887754   35567888888888888999999999888764  5666655555555556788889999888887


Q ss_pred             HcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256          340 NSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF  418 (680)
Q Consensus       340 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  418 (680)
                      +.- +.-...|-.+...+-+.++++.|.+.|..-...-|+ +..|-.|...=-+.|+..+|..++++..-.+ +-|...|
T Consensus       679 k~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw  756 (913)
T KOG0495|consen  679 KSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW  756 (913)
T ss_pred             HhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence            653 445677888888899999999999998887666665 5578777777778889999999999888753 3355688


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhH-HHHHHHHHHHH--
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSV-WGALLLACRIH--  495 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~~~ll~a~~~~--  495 (680)
                      ...+..-.+.|+.+.|..+..+..+. .+.+-..|.--|.+..+.++-..+.+.+++..-.|.+.. ..-++.+-.+.  
T Consensus       757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k  835 (913)
T KOG0495|consen  757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK  835 (913)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence            88888889999999999888887774 466677888888888888888888888887754443321 11122222222  


Q ss_pred             HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 037256          496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEY  553 (680)
Q Consensus       496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~  553 (680)
                      ++.-+++.+..+|++..++..+-..+...|.-++-.+++++-...  .|..|..|..+
T Consensus       836 ar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av  891 (913)
T KOG0495|consen  836 AREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV  891 (913)
T ss_pred             HHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence            677788899999999999999999999999999999998887653  35567777544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=1.7e-11  Score=119.46  Aligned_cols=402  Identities=13%  Similarity=0.133  Sum_probs=227.7

Q ss_pred             CChHHHHHHhhhccCCCCC------cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256           56 GEPNTARSLFNSIHNDKSY------SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG  129 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  129 (680)
                      ..+..|++.++-...+-|+      ....|.+.-.+.+.|.++.|+..|+...+.  .||..+-..|+-.+..-|+-++.
T Consensus       251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekm  328 (840)
T KOG2003|consen  251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKM  328 (840)
T ss_pred             hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHH
Confidence            5667777766544333332      123444555677888888888888877664  46666544455555566778888


Q ss_pred             HHHHHHHHHhCCC------------CchhHHHHHH-----HHHHhcC--ChHHH----HHHHhcCCCCChh---HHH---
Q 037256          130 KVVHGDIIRTGFL------------SDSYVQAALV-----DMYAKCG--QTDDG----CKVFDEMSVRDLV---SWT---  180 (680)
Q Consensus       130 ~~~~~~~~~~g~~------------~~~~~~~~Li-----~~~~~~g--~~~~A----~~~f~~~~~~~~~---~~~---  180 (680)
                      ++.|..|+.....            |+....|.-|     .-.-+..  +.++|    .++..-...||-.   -|.   
T Consensus       329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~  408 (840)
T KOG2003|consen  329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES  408 (840)
T ss_pred             HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence            8888888764322            2222222221     1111111  11111    1122112222211   010   


Q ss_pred             ---------------HHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256          181 ---------------VMITAYEQAEKPEEALILFQKTQQEGLLSDSVT--IVSVASAVGQLGDVLKAQAVHGYAICNAFL  243 (680)
Q Consensus       181 ---------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  243 (680)
                                     .-...|.++|+++.|+++++-+.+..-+.-...  -..++..+-...++..|.++-+..+... .
T Consensus       409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-r  487 (840)
T KOG2003|consen  409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-R  487 (840)
T ss_pred             HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-c
Confidence                           012346777888888888777765432222211  2223333333456666666666555432 1


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH---HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLT---GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                      -+....+.-.+.-...|++++|.+.+.+....|..+-.+|..   .+-..|+.++|++.|-++..- +..+...+..+.+
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qian  566 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIAN  566 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            111111212223345677888888888777766655444433   456677888888887776532 2334555666666


Q ss_pred             HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHH
Q 037256          321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKA  399 (680)
Q Consensus       321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A  399 (680)
                      .|....+..+|.+++.+.... ++.|+.+.+-|.+.|-+.|+-.+|.+.+-+--.- .-|..+..=|..-|....-+++|
T Consensus       567 iye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~eka  645 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKA  645 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHH
Confidence            677777777777776655432 4567777777777777777777777665433222 33455555556666666777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCC
Q 037256          400 LEFFSQMLEEGVKPDHITFTSILSAC-SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGC  465 (680)
Q Consensus       400 ~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  465 (680)
                      +..|++..-  ++|+..-|..++..| .+.|+++.|..++....+ .++.|.....-|++..+..|.
T Consensus       646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence            777777665  777777777766655 456777777777776655 456666666666666666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.52  E-value=2.8e-09  Score=109.01  Aligned_cols=460  Identities=14%  Similarity=0.102  Sum_probs=361.5

Q ss_pred             HHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHH----HHhCCCCCCcccHHH
Q 037256           41 ALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYST----MRRSGISSNSYTFPF  115 (680)
Q Consensus        41 li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~  115 (680)
                      |.-+|++ .      ..++.|.++++...+.-| +...|-+-...--++|+.+...++..+    +...|+..+...|..
T Consensus       412 LwlAlar-L------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~  484 (913)
T KOG0495|consen  412 LWLALAR-L------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK  484 (913)
T ss_pred             HHHHHHH-H------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence            4445566 6      788999999998888766 778897776666778998888887765    456788889999999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCC
Q 037256          116 VLKACASNSLILEGKVVHGDIIRTGFLSD--SYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAE  190 (680)
Q Consensus       116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g  190 (680)
                      =..+|-..|..-.+..+....+..|++..  ..+|+.-...+.+.+.++-|+.+|....+   .+...|...+..--..|
T Consensus       485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg  564 (913)
T KOG0495|consen  485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG  564 (913)
T ss_pred             HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence            99999999999999999999998887543  46888888999999999999999987653   36677888877777788


Q ss_pred             CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 037256          191 KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFD  270 (680)
Q Consensus       191 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~  270 (680)
                      ..++-..+|++.... .+-....|....+..-..|++..|..++..+.+.. +.+..+|-+-+..-.....++.|+.+|.
T Consensus       565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~lla  642 (913)
T KOG0495|consen  565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLA  642 (913)
T ss_pred             cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence            899999999998875 33344455555566667799999999999998876 3477888889999999999999999999


Q ss_pred             hcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 037256          271 MMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV-TALILVSACTYLGSRQLGRKFHGYIINSNMKIDA  347 (680)
Q Consensus       271 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~  347 (680)
                      +...  ++...|.--+..---.++.++|++++++..+.  -|+-. .|..+.+.+-+.++.+.|+..|..-.+. ++..+
T Consensus       643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i  719 (913)
T KOG0495|consen  643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI  719 (913)
T ss_pred             HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence            8764  56777777677667789999999999998875  56544 5566667788889999998888765543 35677


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS  426 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  426 (680)
                      ..|-.|.+.--+.|.+-.|..+|++..-. ..|...|-..|..=.+.|+.+.|..+..+.++. .+-+...|..-|...-
T Consensus       720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~  798 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP  798 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence            88999999999999999999999988444 457889999999999999999999999988885 4444457777777666


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHHH-----HHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN-DSVWGALLLACRIHG-----EIA  499 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~~-----~~~  499 (680)
                      +.++-......+.+     .+-|..+.-.+...+-...++++|.+.|.+. ...|| .-+|.-+..-...||     .+.
T Consensus       799 ~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev  873 (913)
T KOG0495|consen  799 RPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV  873 (913)
T ss_pred             CcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence            66664444433332     2456667778888899999999999999987 56665 457877887788885     445


Q ss_pred             HHHHHccCCCCCchHHHHH
Q 037256          500 ANYLFQLEPEHTGYFVLMS  518 (680)
Q Consensus       500 ~~~~~~l~p~~~~~~~~l~  518 (680)
                      +.+...-+|.....+...+
T Consensus       874 ~~~c~~~EP~hG~~W~avS  892 (913)
T KOG0495|consen  874 LKKCETAEPTHGELWQAVS  892 (913)
T ss_pred             HHHHhccCCCCCcHHHHHh
Confidence            6677778888766555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.48  E-value=3.1e-09  Score=113.02  Aligned_cols=500  Identities=12%  Similarity=0.065  Sum_probs=238.7

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS-FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      |.-.|..+-....+ .      |.++.|+-.|.+..+..|+. ...---...|-+.|+...|.+.|.++.+..++.|-.-
T Consensus       206 d~e~W~~ladls~~-~------~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er  278 (895)
T KOG2076|consen  206 DYELWKRLADLSEQ-L------GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER  278 (895)
T ss_pred             ChHHHHHHHHHHHh-c------ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence            44455555554444 4      66666666666666664422 2222233445556666666666666655432212222


Q ss_pred             HHHH----HHHHhccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------------
Q 037256          113 FPFV----LKACASNSLILEGKVVHGDIIRTG-FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--------------  173 (680)
Q Consensus       113 ~~~l----l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--------------  173 (680)
                      +..+    ++.+...++-+.|.+.++..+..+ -..+...++.++.+|.+...++.|......+..              
T Consensus       279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~  358 (895)
T KOG2076|consen  279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE  358 (895)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence            2222    233334444455555555554422 123344555666666666666555554433211              


Q ss_pred             ------------CChhHHH----HHHHHHHhCCCccHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 037256          174 ------------RDLVSWT----VMITAYEQAEKPEEALILFQKTQQEG--LLSDSVTIVSVASAVGQLGDVLKAQAVHG  235 (680)
Q Consensus       174 ------------~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  235 (680)
                                  ++..+|+    -+.-++......+....+...+.+..  +.-+...|..+..++...|.+.+|..++.
T Consensus       359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~  438 (895)
T KOG2076|consen  359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS  438 (895)
T ss_pred             hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                        0111111    11222223333333333333333333  22234456666677777777777777777


Q ss_pred             HHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHHh-------
Q 037256          236 YAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDL---ISWNSMLTGYIQNGQASEALLLFDEMQN-------  305 (680)
Q Consensus       236 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-------  305 (680)
                      .+.......+..+|-.+..+|...|.++.|.+.|+.+..-++   ..--+|-..+.+.|+.++|++.+..+..       
T Consensus       439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e  518 (895)
T KOG2076|consen  439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE  518 (895)
T ss_pred             HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence            776665555666777777777777777777777776654322   2333444556677777777777766431       


Q ss_pred             -CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC----------------------CCCchHHHHHHHHHHHHcCC
Q 037256          306 -SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN----------------------MKIDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       306 -~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~----------------------~~~~~~~~~~li~~y~k~g~  362 (680)
                       .+..|+..........+.+.|+.++-..+-..++...                      ..........++.+-.+.++
T Consensus       519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~  598 (895)
T KOG2076|consen  519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD  598 (895)
T ss_pred             hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence             1233333333333444445555444333322222100                      00011111111222222221


Q ss_pred             HHHHHHHHhhc------CCCCCCHhH----HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--HH-HHHHHHHHc
Q 037256          363 LDTAENMFNDI------HPSERNVSS----WNVLIAGYGMHGHGRKALEFFSQMLEEG--VKPDHI--TF-TSILSACSH  427 (680)
Q Consensus       363 ~~~A~~~f~~~------~~~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t~-~~ll~a~~~  427 (680)
                      .....+-...-      ....-+..-    +.-++..+++.+++++|+.+...+.+..  ..++..  .+ ...+.++..
T Consensus       599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~  678 (895)
T KOG2076|consen  599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY  678 (895)
T ss_pred             hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence            11111000000      000111111    2334445556666666666655555432  111111  11 223344455


Q ss_pred             cCCHHHHHHHHHHhhhc-CCCcC---hHHHHHHHH-----------------------------------HHHhcCCHHH
Q 037256          428 AGLIDEGRKCFADMTKL-SVKPE---VKHYACMVD-----------------------------------MLGRAGCLYE  468 (680)
Q Consensus       428 ~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~-----------------------------------~~~~~g~~~~  468 (680)
                      .+++..|...++.|... ++..+   ...|++...                                   .+...+.+..
T Consensus       679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~  758 (895)
T KOG2076|consen  679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKH  758 (895)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHH
Confidence            56666666655555544 22111   122332111                                   2234456666


Q ss_pred             HHHHHHhC-CCCCCHhHHHHHHHHHHHH----------------HHHHHHHHHccCCC--CCchHHHHHHHHHhcCChhH
Q 037256          469 AFDMIKQM-PLPPNDSVWGALLLACRIH----------------GEIAANYLFQLEPE--HTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       469 A~~~~~~m-~~~p~~~~~~~ll~a~~~~----------------~~~~~~~~~~l~p~--~~~~~~~l~~~~~~~g~~~~  529 (680)
                      |+..+-+. ...||....+.+++.-..|                |..-+.+..++.-.  ...+.+.++.+|-..|-..-
T Consensus       759 Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L  838 (895)
T KOG2076|consen  759 ALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL  838 (895)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence            76655444 3456666666666554444                33333344444332  45788889999999999999


Q ss_pred             HHHHHHHHHhC
Q 037256          530 VGKLREDMKNK  540 (680)
Q Consensus       530 A~~~~~~m~~~  540 (680)
                      |..++++..+-
T Consensus       839 A~~YYekvL~~  849 (895)
T KOG2076|consen  839 AVSYYEKVLEV  849 (895)
T ss_pred             HHHHHHHHhCC
Confidence            99999988764

>TIGR00540 hemY_coli hemY protein

Probab=99.48  E-value=6e-11  Score=124.77  Aligned_cols=285  Identities=15%  Similarity=0.067  Sum_probs=197.8

Q ss_pred             hCCCccHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHH
Q 037256          188 QAEKPEEALILFQKTQQEGLLSDS-VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKAR  266 (680)
Q Consensus       188 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~  266 (680)
                      ..|+++.|.+.+.+..+.  .|+. ..+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            457777777777665543  2332 2333444556666777777777777665543333334445577788889999998


Q ss_pred             HHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---hhhcchHHHHHHHHHHHH
Q 037256          267 LVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC---TYLGSRQLGRKFHGYIIN  340 (680)
Q Consensus       267 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~  340 (680)
                      ..++.+.+   .++..+..+...+.+.|++++|.+++..+.+.++.+.......-..+.   ...+..+.+.+.+..+.+
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            88888865   366678888889999999999999999999886443322211111111   222233333334444444


Q ss_pred             cCC---CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256          341 SNM---KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSS---WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD  414 (680)
Q Consensus       341 ~~~---~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  414 (680)
                      ...   +.+...+..+...+...|+.++|.+++++..+..||...   +..........++.+.+++.+++..+  ..|+
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~  331 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD  331 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence            322   247888999999999999999999999999776666542   12222333446788899999988887  4566


Q ss_pred             HH---HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          415 HI---TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       415 ~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..   ...++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55   455778889999999999999996554445799988999999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.7e-10  Score=112.56  Aligned_cols=441  Identities=15%  Similarity=0.141  Sum_probs=292.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 037256           81 MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPF-VLKACASNSLILEGKVVHGDIIRTGFLSD----SYVQAALVDMY  155 (680)
Q Consensus        81 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~~  155 (680)
                      |.+-|.-+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+.+|.+.+...+..-...+    .-+.+.+.-.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            44456667778899999998888777777654432 22445677788899998887776532222    23445555567


Q ss_pred             HhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC------------HhHHHHHH---
Q 037256          156 AKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD------------SVTIVSVA---  218 (680)
Q Consensus       156 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t~~~ll---  218 (680)
                      .+.|++++|...|+...  .||..+--.|+-++.--|+-++..+.|.+|......||            ....+..+   
T Consensus       287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            88999999999999765  36666544455556667889999999999986533333            22222222   


Q ss_pred             --HHHhccC--ChHHHHHHHHHHHHccCCCChhH-------------HH--------HHHHHHHhcCCHHHHHHHHHhcC
Q 037256          219 --SAVGQLG--DVLKAQAVHGYAICNAFLEDLCI-------------QN--------SIVAMYARCGNVEKARLVFDMME  273 (680)
Q Consensus       219 --~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~Li~~y~~~g~~~~A~~~f~~m~  273 (680)
                        +-..+.+  +-+++.-.-..++.--+.|+-..             +.        .-..-|.+.|+++.|.+++.-..
T Consensus       367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~  446 (840)
T KOG2003|consen  367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE  446 (840)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence              1111111  11122111122221112222110             00        11234778899999988888777


Q ss_pred             CCChhHHHHH-----HHHHHH-cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 037256          274 KRDLISWNSM-----LTGYIQ-NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA  347 (680)
Q Consensus       274 ~~~~~~~~~l-----i~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~  347 (680)
                      ++|..+-++-     .--|.+ ..++.+|.+.-....... +-+....+.--......|++++|...+++.+...-....
T Consensus       447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e  525 (840)
T KOG2003|consen  447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE  525 (840)
T ss_pred             hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence            6554332221     112233 334666666555544322 223333332233334568999999999999876544444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC  425 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~  425 (680)
                      ..|| +.-.+-+.|++++|++.|-++... ..++...-.+.+.|-...+..+|++++.+...  +-| |.....-|...|
T Consensus       526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly  602 (840)
T KOG2003|consen  526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence            4444 344577889999999999888444 44566777788889999999999999977766  555 456778888899


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEI  498 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~  498 (680)
                      -+.|+-.+|.+.+-.--+ -++-++++...|..-|....-.++|+.+|++. -++|+.+-|-.++.+|.+.      +..
T Consensus       603 dqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d  681 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD  681 (840)
T ss_pred             hcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence            999999999988755433 46778889888999999999999999999997 5789999999999999887      444


Q ss_pred             HHHHHHccCCCCCchHHHHHHHHHhcCC
Q 037256          499 AANYLFQLEPEHTGYFVLMSNIYAASNK  526 (680)
Q Consensus       499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~  526 (680)
                      ..+.....-|.|....-.|..++...|.
T Consensus       682 ~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHhCccchHHHHHHHHHhccccc
Confidence            5556666789998888888888887774

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.46  E-value=1.2e-10  Score=121.84  Aligned_cols=248  Identities=17%  Similarity=0.124  Sum_probs=166.9

Q ss_pred             hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHH
Q 037256          222 GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALL  298 (680)
Q Consensus       222 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~  298 (680)
                      ...|+.+.+.+.+..+.+....+...........+...|+++.|...++.+.+   .++.....+...|.+.|++++|.+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            44455555555555554432111112222335566677777777777777654   255666777777888888888888


Q ss_pred             HHHHHHhCCCCCCH-------hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          299 LFDEMQNSDCKPNP-------VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       299 ~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      ++..+.+.+..++.       .+|..++.......+.+...++++.+.+. .+.++.....+...+.+.|+.++|.++++
T Consensus       209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            88888776544322       12223333333333444444555444322 24577788889999999999999999998


Q ss_pred             hcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh
Q 037256          372 DIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV  450 (680)
Q Consensus       372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~  450 (680)
                      +..+..++....  ++.+....++.+++++..++..+  -.|+.. .+..+...|.+.+++++|.+.|+.+.+.  .|+.
T Consensus       288 ~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~  361 (398)
T PRK10747        288 DGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA  361 (398)
T ss_pred             HHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence            886555555322  33444456899999999999887  456654 5777888899999999999999998864  6888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          451 KHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       451 ~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..|..|...+.+.|+.++|.+.+++.
T Consensus       362 ~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        362 YDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88889999999999999999988764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2.5e-10  Score=112.28  Aligned_cols=366  Identities=16%  Similarity=0.176  Sum_probs=254.5

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHH--HHH
Q 037256          140 GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTI--VSV  217 (680)
Q Consensus       140 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l  217 (680)
                      +...|.+.+-...-.+.+.|....|++.|......-+..|.+.+....-.-+.+    ...... .|.+.|...+  .-+
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----~~~~l~-~~l~~~~h~M~~~F~  233 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----ILSILV-VGLPSDMHWMKKFFL  233 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----HHHHHH-hcCcccchHHHHHHH
Confidence            334555544444445566788888888887776544444554443322222222    222222 1222222222  123


Q ss_pred             HHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcC
Q 037256          218 ASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR------DLISWNSMLTGYIQNG  291 (680)
Q Consensus       218 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g  291 (680)
                      ..++......+++.+-.......|++.+...-+-...+.-...+++.|+.+|+++.+.      |..+|+.++  |+++.
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~  311 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence            4555566678888888888888998888887777777888889999999999999874      445666655  34443


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          292 QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      +..  +.++.+-.-.--+--+.|...+.+-|+-.+..++|..+|+..++.+ +....+|+.+.+-|....+...|.+-++
T Consensus       312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            322  2222222111113344577778888888999999999999999987 5677889999999999999999999999


Q ss_pred             hcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC
Q 037256          372 DIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE  449 (680)
Q Consensus       372 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~  449 (680)
                      +..+. ..|-..|-.|..+|.-.+.+.-|+-.|++..+  ++|+. ..|.+|..+|.+.++.++|+..|......| ..+
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte  465 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE  465 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence            98666 45788999999999999999999999999998  77765 589999999999999999999999998875 346


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256          450 VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       450 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~  529 (680)
                      ...+..|.++|-+.++.++|.+.|++.-.     +               ....-+.+|+...+..-|+.-+.+.++|++
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~-----~---------------~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~  525 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVE-----V---------------SELEGEIDDETIKARLFLAEYFKKMKDFDE  525 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----H---------------HHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence            67888999999999999999888876410     0               000001223223334446677778888888


Q ss_pred             HHHHHHHHH
Q 037256          530 VGKLREDMK  538 (680)
Q Consensus       530 A~~~~~~m~  538 (680)
                      |..+-....
T Consensus       526 As~Ya~~~~  534 (559)
T KOG1155|consen  526 ASYYATLVL  534 (559)
T ss_pred             HHHHHHHHh
Confidence            877665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=5e-10  Score=110.87  Aligned_cols=211  Identities=16%  Similarity=0.124  Sum_probs=155.0

Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFF  403 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~  403 (680)
                      .|+.-.+.+-++..++....+ ...|--+..+|....+.++..+.|+...+..| |+.+|..-...+.-.+++++|..=|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            456666666677766655332 22255566677888888888888887755543 4666766666666777888888888


Q ss_pred             HHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256          404 SQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN  481 (680)
Q Consensus       404 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  481 (680)
                      ++.+.  +.|+.. .|..+--+..+.++++++...|++.+++ ++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus       418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            88887  677654 6777777777888888888888888774 5666788888888888888899888888775 44444


Q ss_pred             ---------HhHHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          482 ---------DSVWGALLLACRIH----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       482 ---------~~~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                               +.+-.+++-.-.+.    |...+.++++++|...-+|..|+.+-...|+.++|+++|++-..
T Consensus       495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                     22223333222222    77788899999999999999999999999999999999998653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.6e-09  Score=105.20  Aligned_cols=368  Identities=11%  Similarity=0.044  Sum_probs=259.4

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhH-HHHHHHHHHhCCCccHHHHH
Q 037256          120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVS-WTVMITAYEQAEKPEEALIL  198 (680)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~  198 (680)
                      ..+.|....|...+...+..    -+..|.+-+....-.-+.+.+..+-...+..+... ---+..++....+.+++++-
T Consensus       174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k  249 (559)
T KOG1155|consen  174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK  249 (559)
T ss_pred             HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777777777666543    23344444443333445555555554444432211 12244556666688888888


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC--CChhHHHHHHHHHHhcCCHHH-HHHHHHhcCCC
Q 037256          199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL--EDLCIQNSIVAMYARCGNVEK-ARLVFDMMEKR  275 (680)
Q Consensus       199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~-A~~~f~~m~~~  275 (680)
                      .......|++-+...-+....+.-...|+++|+.+|+.+.+..+-  .|..+|+.++-.--.+.++.- |..++ .+.+-
T Consensus       250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy  328 (559)
T KOG1155|consen  250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY  328 (559)
T ss_pred             HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence            888888887666655555555666789999999999999998532  256666665543333333322 22222 23333


Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD  355 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~  355 (680)
                      -+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++.+++-+ +.|-..|-.|..
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ  406 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence            45566666777888889999999999998764 3344567777778899999999999999998876 678899999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 037256          356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEG  434 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  434 (680)
                      +|.-.+...-|+-.|++.....| |...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+-+.++.++|
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999976666 68899999999999999999999999999865 33667899999999999999999


Q ss_pred             HHHHHHhhhc----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH
Q 037256          435 RKCFADMTKL----SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH  495 (680)
Q Consensus       435 ~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~  495 (680)
                      .+.|++-++.    |...+  .....-|..-+.+.+++++|....... ...+...--++|+..++++
T Consensus       486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~  553 (559)
T KOG1155|consen  486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKI  553 (559)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence            9999887663    43332  333334566778899999998876655 2244555556666666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=9.4e-11  Score=122.60  Aligned_cols=284  Identities=8%  Similarity=0.004  Sum_probs=170.5

Q ss_pred             CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCChHHHH
Q 037256           88 NGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA--ALVDMYAKCGQTDDGC  165 (680)
Q Consensus        88 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~Li~~~~~~g~~~~A~  165 (680)
                      .|+++.|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+.  .|+.....  .....+...|+.+.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            578888887776655432111 112322334446777888888888777664  34433222  3355677778888887


Q ss_pred             HHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256          166 KVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF  242 (680)
Q Consensus       166 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  242 (680)
                      ..+++..+   .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-                        
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------  228 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------  228 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence            77776653   25556677777777778888888777777766533211 111000                        


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256          243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILV  319 (680)
Q Consensus       243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (680)
                         ..++..++....+..+.+...++++.+++   .++.....+...+...|+.++|.+++++..+.  +||....  ++
T Consensus       229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l  301 (398)
T PRK10747        229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL  301 (398)
T ss_pred             ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence               00122223333333455666666666654   46777888888999999999999999888773  4444211  12


Q ss_pred             HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHH
Q 037256          320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKA  399 (680)
Q Consensus       320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A  399 (680)
                      .+....++.+.+.+..+...+.. +.|.....++..++.+.+++++|.+.|+......|+...+..+...+.+.|+.++|
T Consensus       302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA  380 (398)
T ss_pred             HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence            22223366666666666555443 34555566666666666666666666666655566666666666666666666666


Q ss_pred             HHHHHHHH
Q 037256          400 LEFFSQML  407 (680)
Q Consensus       400 ~~l~~~m~  407 (680)
                      .+++++-.
T Consensus       381 ~~~~~~~l  388 (398)
T PRK10747        381 AAMRRDGL  388 (398)
T ss_pred             HHHHHHHH
Confidence            66666553

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=7.2e-13  Score=132.27  Aligned_cols=255  Identities=19%  Similarity=0.271  Sum_probs=102.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHh-cCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh
Q 037256          251 SIVAMYARCGNVEKARLVFDM-MEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL  325 (680)
Q Consensus       251 ~Li~~y~~~g~~~~A~~~f~~-m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (680)
                      .+..++.+.|++++|.++++. +..    .|+.-|..+.......+++++|.+.++++...+. -+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            457788888999999998854 322    3556666666677778889999999988887642 245556666655 677


Q ss_pred             cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 037256          326 GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEF  402 (680)
Q Consensus       326 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l  402 (680)
                      +++++|.++.....+..  ++...+..++..|.+.++++++.++++.+...   ..+...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888776665443  45566677788888888888888888875322   35667788888888888888888888


Q ss_pred             HHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 037256          403 FSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPN  481 (680)
Q Consensus       403 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~  481 (680)
                      +++..+  ..|+ ......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|+.++++.     
T Consensus       169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~-----  240 (280)
T PF13429_consen  169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA-----  240 (280)
T ss_dssp             HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-----
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-----
Confidence            888888  5665 4467777778888888888888887777653 455566778888888888888888887653     


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                                            +...|+|+.....+++++...|+.++|.+++.+.-.
T Consensus       241 ----------------------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  241 ----------------------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             ----------------------HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ----------------------cccccccccccccccccccccccccccccccccccc
Confidence                                  456899999999999999999999999999887643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=8.7e-13  Score=131.71  Aligned_cols=255  Identities=16%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037256           80 TMIRAYANNGHCVETLELYSTMRRSGISSNS-YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC  158 (680)
Q Consensus        80 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~  158 (680)
                      .+...+.+.|++++|++++++......+|+. ..|..+...+...++.+.|.+.++.+++.+. .++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            4456667778888888888654433223333 3333444455567778888888888877652 355666666666 577


Q ss_pred             CChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 037256          159 GQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEG-LLSDSVTIVSVASAVGQLGDVLKAQAVHG  235 (680)
Q Consensus       159 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  235 (680)
                      +++++|.+++...-  .++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77888877776553  2355566777777778888888888877766432 23455556666666677777777777777


Q ss_pred             HHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256          236 YAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP  312 (680)
Q Consensus       236 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (680)
                      .+++.. +.|..+.+.++..+...|+.+++.++++...   ..|+..|..+..+|...|+.++|+..|++..... +.|.
T Consensus       171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            777664 3345566667777777777776655555443   2455666677777777777777777777766542 3345


Q ss_pred             hhHHHHHHHHhhhcchHHHHHHHHHH
Q 037256          313 VTALILVSACTYLGSRQLGRKFHGYI  338 (680)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~i~~~~  338 (680)
                      .+...+..++...|+.++|.++...+
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            55555555555555555555554443

>TIGR00540 hemY_coli hemY protein

Probab=99.38  E-value=1.3e-09  Score=114.80  Aligned_cols=287  Identities=8%  Similarity=0.015  Sum_probs=150.2

Q ss_pred             hCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 037256           87 NNGHCVETLELYSTMRRSGISSNSY-TFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGC  165 (680)
Q Consensus        87 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~  165 (680)
                      ..|+++.|.+.+.+..+..  |+.. .+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            3567777777766655542  3322 222333445566677777777666655432222223333455556666666666


Q ss_pred             HHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256          166 KVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF  242 (680)
Q Consensus       166 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  242 (680)
                      ..++.+.+   .+...+..+...+.+.|++++|.+++..+.+.++.+ ...+..+-.                       
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~-----------------------  229 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQ-----------------------  229 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHH-----------------------
Confidence            66665542   244455566666666666666666666666554321 111110000                       


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH-HH
Q 037256          243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL-IL  318 (680)
Q Consensus       243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l  318 (680)
                          ..+..++..-......+...+.++..++   .++..+..+...+...|+.++|.+++++..+.  .||..... .+
T Consensus       230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~  303 (409)
T TIGR00540       230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL  303 (409)
T ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence                0011111111122234445555555554   37778888888888999999999998888875  34433210 01


Q ss_pred             HHHH--hhhcchHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHHcCCHHHHHHHHh--hcCCCCCCHhHHHHHHHHHHh
Q 037256          319 VSAC--TYLGSRQLGRKFHGYIINSNMKIDA--TLRNAVMDMYAKCGDLDTAENMFN--DIHPSERNVSSWNVLIAGYGM  392 (680)
Q Consensus       319 l~a~--~~~g~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~y~k~g~~~~A~~~f~--~~~~~~~~~~~~~~li~~~~~  392 (680)
                      +..+  ...++.+.+.+.++...+.. +.|+  ....++...+.+.|++++|.+.|+  ......|+...+..+...+.+
T Consensus       304 l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~  382 (409)
T TIGR00540       304 CLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ  382 (409)
T ss_pred             HHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            1111  22344455555555444432 2233  445555666666666666666666  233335555555556666666


Q ss_pred             cCChHHHHHHHHHH
Q 037256          393 HGHGRKALEFFSQM  406 (680)
Q Consensus       393 ~g~~~~A~~l~~~m  406 (680)
                      .|+.++|.+++++.
T Consensus       383 ~g~~~~A~~~~~~~  396 (409)
T TIGR00540       383 AGDKAEAAAMRQDS  396 (409)
T ss_pred             cCCHHHHHHHHHHH
Confidence            66666666665553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.1e-09  Score=103.06  Aligned_cols=266  Identities=14%  Similarity=0.157  Sum_probs=168.7

Q ss_pred             CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCCHHHH
Q 037256          189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE---DLCIQNSIVAMYARCGNVEKA  265 (680)
Q Consensus       189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A  265 (680)
                      +.++++|.++|-+|.+.. +.+..+-.++-+.+.+.|..+.|..+|..+.++.--+   .....-.|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            467888888888887742 2233445567777888888888888888877642111   123445667778899999999


Q ss_pred             HHHHHhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhhhcchHHHHHHHHHH
Q 037256          266 RLVFDMMEKRDL---ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV----TALILVSACTYLGSRQLGRKFHGYI  338 (680)
Q Consensus       266 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~i~~~~  338 (680)
                      +.+|..+.+...   .....|+..|.+..+|++|++.-+++...+-.+..+    .|.-+........+.+.|+..++..
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999998877433   455668889999999999999999888776555433    2344444445556667777777666


Q ss_pred             HHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256          339 INSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV--SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       339 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      .+.+ +..+..--.+.+.+...|+++.|.+.++.+.+..|+.  .+...|..+|.+.|+.++....+.++.+.  .++..
T Consensus       207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~  283 (389)
T COG2956         207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD  283 (389)
T ss_pred             HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence            6554 2334444455666677777777777777764444543  24566666777777777777777776663  33333


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      .-..+..--....-.+.|..++.+-.+.  +|+...+..+++.-
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~  325 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH  325 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence            3333333222333344455444443332  56666666666654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=2.3e-08  Score=98.86  Aligned_cols=425  Identities=11%  Similarity=0.094  Sum_probs=315.7

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      +++..|+.+|+....-.. +...|-.-+..=.++.....|..+|++....=+..|.. |-..+..=-..|++..|+++|+
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHH
Confidence            678899999998876522 67788888888899999999999999988753333433 2233333346789999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV  212 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  212 (680)
                      .-.+  ..|+...|++.|+.=.+...++.|+.++++..  .|++.+|--....=-++|...-|..+|....+.  ..|..
T Consensus       166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~  241 (677)
T KOG1915|consen  166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE  241 (677)
T ss_pred             HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence            8876  47999999999999999999999999999864  789999999999889999999999999887764  12222


Q ss_pred             ----HHHHHHHHHhccCChHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---C
Q 037256          213 ----TIVSVASAVGQLGDVLKAQAVHGYAICNAFLED-LCIQNSIVAMYARCGNVEKARLV--------FDMMEKR---D  276 (680)
Q Consensus       213 ----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~--------f~~m~~~---~  276 (680)
                          .|++...--.....++.|.-++...+..-.... ...|..+...=-+.|+....++.        ++.+...   |
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n  321 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN  321 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence                333333333455677888888888876532221 34555555555556664443332        2222222   5


Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh-------hHHHHHHHH---hhhcchHHHHHHHHHHHHcCCCCc
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV-------TALILVSAC---TYLGSRQLGRKFHGYIINSNMKID  346 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~i~~~~~~~~~~~~  346 (680)
                      -.+|--.+..--..|+.+...++|++.... ++|-..       .|.-+=-+|   ....+.+.++++++..++ =++..
T Consensus       322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk  399 (677)
T KOG1915|consen  322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK  399 (677)
T ss_pred             chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence            567777778778889999999999999865 566321       121111122   346789999999999988 34555


Q ss_pred             hHHHHHHHHHH----HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037256          347 ATLRNAVMDMY----AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSI  421 (680)
Q Consensus       347 ~~~~~~li~~y----~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l  421 (680)
                      ..++.-+=-+|    .++.++..|.+++-......|...++...|..=.+.++++...+++++.++  ..| |..+|...
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky  477 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY  477 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence            66666555555    468899999999999977789999999999988999999999999999999  556 45688888


Q ss_pred             HHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037256          422 LSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALL  489 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll  489 (680)
                      ...-...|+.+.|..+|+-.++. ........|.+.|+.=...|.++.|..+++++ ...+-..+|-++.
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA  547 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA  547 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence            87778899999999999999886 44445567888888888999999999999987 3344555676554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=7.8e-11  Score=121.24  Aligned_cols=273  Identities=12%  Similarity=0.086  Sum_probs=206.7

Q ss_pred             CHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-C-CCCHhhHHHHHHHHhhhcchHHHHHHH
Q 037256          261 NVEKARLVFDMMEK--RDL-ISWNSMLTGYIQNGQASEALLLFDEMQNSD-C-KPNPVTALILVSACTYLGSRQLGRKFH  335 (680)
Q Consensus       261 ~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~g~~~~a~~i~  335 (680)
                      +..+|...|..+++  .|+ ....-+..+|...+++++|.++|+.+.+.. . .-+...|+++|--+-+.    .+...+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            46788888888664  233 344557788999999999999999988642 1 11445666666443221    112222


Q ss_pred             -HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          336 -GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       336 -~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                       +.+++.. +..+.+|.++...|+-.++.+.|.+.|++....+| ...+|+.+..-+.....+|.|...|+..+.  +.|
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence             2222222 56788999999999999999999999999976666 577899888889999999999999998876  677


Q ss_pred             CHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---hHHHH-
Q 037256          414 DHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND---SVWGA-  487 (680)
Q Consensus       414 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~---~~~~~-  487 (680)
                      ... .|..+...|.+.++++.|.-.|+++.+.+ +-+.....++...+-+.|+.|+|++++++. .+.|..   ....+ 
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            765 78888889999999999999999998765 445666777888899999999999999987 333322   22222 


Q ss_pred             HHHHHHHH--HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          488 LLLACRIH--GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       488 ll~a~~~~--~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ++-+.-++  +...++++.++-|++...|.+++.+|.+.|+.+.|..-|.-+.+-+
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            22222222  7778888999999999999999999999999999999999887644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.5e-07  Score=93.13  Aligned_cols=456  Identities=11%  Similarity=0.059  Sum_probs=312.2

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD  153 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  153 (680)
                      +...|-.-..-=..++++..|..+|++.+... ..+...|..-+..=.+++.+..|+.+++..+..=...| ..|-..+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence            44455555555556778889999999998754 23555566666666788999999999999988642223 34445555


Q ss_pred             HHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256          154 MYAKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ  231 (680)
Q Consensus       154 ~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  231 (680)
                      +=-..|++..|+++|++-.  +|+...|++.|..=.+-..++.|..+|++..-.  .|+..+|.-..+.-.+.|+...+.
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence            6667899999999999765  689999999999999999999999999998864  699999999988888999999999


Q ss_pred             HHHHHHHHc-c-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-hhHHHHHHHHHHHcCC---hhHHHHH--
Q 037256          232 AVHGYAICN-A-FLEDLCIQNSIVAMYARCGNVEKARLVFDMME----KRD-LISWNSMLTGYIQNGQ---ASEALLL--  299 (680)
Q Consensus       232 ~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~-~~~~~~li~~~~~~g~---~~~A~~~--  299 (680)
                      .+++.+++. | -..+...+.+....=.++..++.|.-+|.-..    +.. ...|.....-=-+-|+   .++++--  
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            999988764 2 11234455666666667788888888876543    322 2333333333334444   3444332  


Q ss_pred             ---HHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch-HHHHHHHHH--------HHHcCCHHHHH
Q 037256          300 ---FDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA-TLRNAVMDM--------YAKCGDLDTAE  367 (680)
Q Consensus       300 ---~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~-~~~~~li~~--------y~k~g~~~~A~  367 (680)
                         ++.+...+ +-|-.|+--.+..-...|+.+..+++++.++..-.+... ..|.-.|-.        -....+++.+.
T Consensus       308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence               33344333 556667777777777889999999999998865432221 122222211        13467888899


Q ss_pred             HHHhhcCCCCCC-HhHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          368 NMFNDIHPSERN-VSSWNVLIAGY----GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       368 ~~f~~~~~~~~~-~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      ++|+...+.-|. ..|+.-+--.|    .++.+...|.+++...+.  .-|-..+|...|..-.+.+.++.+..++++..
T Consensus       387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999887555443 44554443333    466788889888887664  78999999999998899999999999999988


Q ss_pred             hcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----hHHHHHHHHHHHH-----HHHHHHHHHccCCCCCch
Q 037256          443 KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPND----SVWGALLLACRIH-----GEIAANYLFQLEPEHTGY  513 (680)
Q Consensus       443 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~  513 (680)
                      +-+ +.+..+|......=...|+.+.|..+|+-.-.+|..    ..|.+.|.-=...     ++...+++++..+... .
T Consensus       465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v  542 (677)
T KOG1915|consen  465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V  542 (677)
T ss_pred             hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence            765 556777877777777889999999999876444532    3444443322111     4555667777666433 5


Q ss_pred             HHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 037256          514 FVLMSNIYA-----ASN-----------KWREVGKLREDMK  538 (680)
Q Consensus       514 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~  538 (680)
                      +...+..-.     ..|           ....|.++|+...
T Consensus       543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            555544333     223           4556666666653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.4e-10  Score=117.72  Aligned_cols=273  Identities=13%  Similarity=0.054  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCccHHHHHHH
Q 037256          127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV------RDLVSWTVMITAYEQAEKPEEALILFQ  200 (680)
Q Consensus       127 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~  200 (680)
                      .+|...|+.+.. .+.-...+...+..+|...+++++|+++|+.+..      .+...|++.+.-+-+    +-++..+.
T Consensus       336 ~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La  410 (638)
T KOG1126|consen  336 REALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA  410 (638)
T ss_pred             HHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence            445555555222 2222334445555555555555555555555432      144455554443221    11222221


Q ss_pred             -HHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 037256          201 -KTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLIS  279 (680)
Q Consensus       201 -~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~  279 (680)
                       .+... -+-.+.||..+...++-.++.+.|.+.|..+++.. +...++|+.+..=+.....+|.|...|+.....|+..
T Consensus       411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh  488 (638)
T KOG1126|consen  411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH  488 (638)
T ss_pred             HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence             11111 11222333333333333333333333333333321 1134444444444455555666666666655544444


Q ss_pred             HHH---HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          280 WNS---MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       280 ~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                      ||+   +...|.+.++++.|.-.|++..+-+                                    +.+.+....+...
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------------------------------------P~nsvi~~~~g~~  532 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------------------------------------PSNSVILCHIGRI  532 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCC------------------------------------ccchhHHhhhhHH
Confidence            433   3445666666666666666655432                                    2334444455566


Q ss_pred             HHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 037256          357 YAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEG  434 (680)
Q Consensus       357 y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a  434 (680)
                      +-+.|+.|+|+++|++.... ..|+..--..+..+...+++++|+..++++++  +.|+.. .|..+...|-+.|+.+.|
T Consensus       533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHH
Confidence            66677777777777766333 33444444455556667778888888888777  667665 455566677778888888


Q ss_pred             HHHHHHhhhc
Q 037256          435 RKCFADMTKL  444 (680)
Q Consensus       435 ~~~~~~m~~~  444 (680)
                      +.-|.-+.+.
T Consensus       611 l~~f~~A~~l  620 (638)
T KOG1126|consen  611 LLHFSWALDL  620 (638)
T ss_pred             HHhhHHHhcC
Confidence            7777777654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.32  E-value=1.4e-09  Score=114.94  Aligned_cols=255  Identities=11%  Similarity=0.032  Sum_probs=168.4

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 037256           96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD  175 (680)
Q Consensus        96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~  175 (680)
                      .++-.|...|+.||..||..++.-|+..|+.+.|- +|..|.-...+....+++.++......++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            45667888899999999999999999999998888 8888877777778888999999888888877765       677


Q ss_pred             hhHHHHHHHHHHhCCCccHHHHHHHH-HHH-------cCCCCCHhHHHHHHHHHhccC-Ch------HHHHHHHHHHHHc
Q 037256          176 LVSWTVMITAYEQAEKPEEALILFQK-TQQ-------EGLLSDSVTIVSVASAVGQLG-DV------LKAQAVHGYAICN  240 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~  240 (680)
                      ..+|+.|..+|.+.|+... ++..++ |..       .|+..-..-+-..++.|...- +.      .--+.++...++.
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998765 333333 221       222211122211112211110 00      0011222333333


Q ss_pred             cCCCChhHHH-H---HHHHHH-hcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256          241 AFLEDLCIQN-S---IVAMYA-RCGNVEKARLVFDMMEK-RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT  314 (680)
Q Consensus       241 g~~~~~~~~~-~---Li~~y~-~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  314 (680)
                      +....+..++ .   .++-.. ....+++-........+ +++.++.+++..-..+|+.+.|..++.+|.+.|++.+.+-
T Consensus       162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy  241 (1088)
T KOG4318|consen  162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY  241 (1088)
T ss_pred             HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence            3111111111 0   111111 11223333333333333 7889999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~  362 (680)
                      |..++-+   .++......+..-|...|+.|+..++.-.+-...+.|.
T Consensus       242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            8888866   78888888999999999999998888766655555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.32  E-value=5.5e-09  Score=110.54  Aligned_cols=510  Identities=9%  Similarity=0.041  Sum_probs=263.3

Q ss_pred             CcCC-CCCcchHHHHHHhccccccH--HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCC
Q 037256            2 RRLG-PSTEGFYDQLLKSCNFLASL--RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDK   72 (680)
Q Consensus         2 ~~~~-~~~~~~~~~~l~~~~~~~~~--~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~   72 (680)
                      +..| .||++||.+++..++..|+.  -.|...+.      +..++++++..-.. .      ++.+.|.         .
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~-A------nd~Enpk---------e   80 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKE-A------NDAENPK---------E   80 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccc-c------ccccCCC---------C
Confidence            4567 79999999999999888776  22444443      77788888887777 6      7766654         4


Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHH-HH-------hCCCCCCcccHHHHHHHHhcc-CChH------HHHHHHHHHH
Q 037256           73 SYSFLWNTMIRAYANNGHCVETLELYST-MR-------RSGISSNSYTFPFVLKACASN-SLIL------EGKVVHGDII  137 (680)
Q Consensus        73 p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~-~~~~------~a~~~~~~~~  137 (680)
                      |...+|+.|..+|.+.|+... ++..++ |.       ..|+..-..-|-..+..|-.. .+..      --+.+++..+
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            577789999999999998765 333333 21       223221122222222222111 0111      1122334444


Q ss_pred             HhCCCCchhHHHHHHHHHHhc-----CChHHHHHHHhcCC-CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH
Q 037256          138 RTGFLSDSYVQAALVDMYAKC-----GQTDDGCKVFDEMS-VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS  211 (680)
Q Consensus       138 ~~g~~~~~~~~~~Li~~~~~~-----g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  211 (680)
                      +.+..-.+..++.-...+.+.     ..+++-........ .++..+|..++..-.-+|+.+.|..++.+|.+.|++.+.
T Consensus       160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            443111111111111111221     22333333333333 478999999999999999999999999999999999888


Q ss_pred             hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256          212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG  291 (680)
Q Consensus       212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g  291 (680)
                      .-|-.++-+   .++......+..-|...|+.|+..|+.-.+-.+.+.|....+.+..+.-.--....+..+..+...+.
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k  316 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK  316 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence            877777755   78888888899999999999999999877777776555333322211100011122233333211111


Q ss_pred             Ch-----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHcCCH
Q 037256          292 QA-----SEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM---KIDATLRNAVMDMYAKCGDL  363 (680)
Q Consensus       292 ~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~y~k~g~~  363 (680)
                      +.     .-....+++..-.|+......|... .-....|.-+...++-..+...-.   ..++..+..++.-       
T Consensus       317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq-------  388 (1088)
T KOG4318|consen  317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ-------  388 (1088)
T ss_pred             HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH-------
Confidence            11     1122222332223433333222222 222235666666666655542211   1122333333333       


Q ss_pred             HHHHHHHhhcCCCCCCHh-HHH--H------------HHHHHHhcCChHHHHHHHHHHHHc----CCCC-------CHHH
Q 037256          364 DTAENMFNDIHPSERNVS-SWN--V------------LIAGYGMHGHGRKALEFFSQMLEE----GVKP-------DHIT  417 (680)
Q Consensus       364 ~~A~~~f~~~~~~~~~~~-~~~--~------------li~~~~~~g~~~~A~~l~~~m~~~----g~~p-------~~~t  417 (680)
                           .|.+.  ..++.. .++  .            .+.-++..-+...+++-+......    -..|       -...
T Consensus       389 -----yFrr~--e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi  461 (1088)
T KOG4318|consen  389 -----YFRRI--ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI  461 (1088)
T ss_pred             -----HHHHH--HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence                 33332  111110 011  0            000011111111111111111100    0111       1112


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHH
Q 037256          418 FTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP-----LPPNDSVWGALLLAC  492 (680)
Q Consensus       418 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~a~  492 (680)
                      -+.++..|.+.-+..+++..-+.....-+.   ..|..||+.+.+..+.++|..+.++..     ..-|...+..+....
T Consensus       462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL  538 (1088)
T KOG4318|consen  462 ANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL  538 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence            345555665555555555444333332221   467777777777777777777777762     112333444455544


Q ss_pred             HHHHHH-HHHHHH-------ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeE
Q 037256          493 RIHGEI-AANYLF-------QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSV  550 (680)
Q Consensus       493 ~~~~~~-~~~~~~-------~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~  550 (680)
                      .+++.. .+-+++       +..|.-.....-+.+..+..|+.+.-.+.++-+...|+.. .|.-|
T Consensus       539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~  603 (1088)
T KOG4318|consen  539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW  603 (1088)
T ss_pred             HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence            444211 111111       2233334455567777788999999999999999888865 34444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=2.9e-09  Score=105.51  Aligned_cols=218  Identities=13%  Similarity=0.085  Sum_probs=162.3

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      ..+.-+|+.-.|..-|+.....   ++..|--+...|.+..+.++..+.|.+....+ +-|+.+|..-.+...-+++++.
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence            3456678888888888887652   22336677778899999999999999888754 4455666666666667778888


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                      |..=|+..+... +.+...|-.+.-+..|.+++++++..|++....-|+ +..||-....+...+++++|.+.|+..++ 
T Consensus       413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-  490 (606)
T KOG0547|consen  413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-  490 (606)
T ss_pred             HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence            888888887765 446666777777778889999999999998666565 67888888999999999999999999887 


Q ss_pred             CCCCCH-------HHHHH-HHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          410 GVKPDH-------ITFTS-ILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       410 g~~p~~-------~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                       +.|+.       .++.. -+-..--.+++..|.+++++..+.. +-....|..|...-.+.|+.++|+++|++.
T Consensus       491 -LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  491 -LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             -hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             55552       11111 0111113478889999999888754 333457888999999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.1e-09  Score=101.23  Aligned_cols=297  Identities=12%  Similarity=0.123  Sum_probs=170.2

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---chhHHHHHHHH
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLS---DSYVQAALVDM  154 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~  154 (680)
                      |-.-+..+. ++++++|.++|-+|.+.... +..+-.+|-+.+.+.|..+.|..+|+.+.++.--+   .....-.|..=
T Consensus        39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          39 YVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            433333333 46789999999999875322 34455567777889999999999999888752111   11233446666


Q ss_pred             HHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhccCCh
Q 037256          155 YAKCGQTDDGCKVFDEMSVRD---LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT----IVSVASAVGQLGDV  227 (680)
Q Consensus       155 ~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~  227 (680)
                      |...|-+|.|+.+|..+.+..   ..+...|+..|-+..+|++|++.-+++.+.+-.+..+-    |.-+........++
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            888899999999999887632   34667788999999999999999998887765544332    33333444444555


Q ss_pred             HHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 037256          228 LKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSD  307 (680)
Q Consensus       228 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  307 (680)
                      +.|...+....+.+ +..+..--.+.+.+                               ...|+++.|++.++...+.+
T Consensus       197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~-------------------------------~~~g~y~~AV~~~e~v~eQn  244 (389)
T COG2956         197 DRARELLKKALQAD-KKCVRASIILGRVE-------------------------------LAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             HHHHHHHHHHHhhC-ccceehhhhhhHHH-------------------------------HhccchHHHHHHHHHHHHhC
Confidence            55555555554443 22223333334444                               44455555555555444443


Q ss_pred             CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHH
Q 037256          308 CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLI  387 (680)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li  387 (680)
                      ..--+.+...+..+|...|+.+.+...+..+.+...  ....-+.+-+.-....-.+.|.....+-...+|+...+..+|
T Consensus       245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~  322 (389)
T COG2956         245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM  322 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence            222223333444444444444444444444433221  122222233333333445555555555544577777777777


Q ss_pred             HHHH---hcCChHHHHHHHHHHHHcC
Q 037256          388 AGYG---MHGHGRKALEFFSQMLEEG  410 (680)
Q Consensus       388 ~~~~---~~g~~~~A~~l~~~m~~~g  410 (680)
                      ..-.   ..|...+.+.+++.|..+.
T Consensus       323 ~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         323 DYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             HhhhccccccchhhhHHHHHHHHHHH
Confidence            6543   3345666666777776543

>PF13041 PPR_2: PPR repeat family

Probab=99.28  E-value=9.4e-12  Score=87.29  Aligned_cols=50  Identities=32%  Similarity=0.634  Sum_probs=46.2

Q ss_pred             CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037256          378 RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH  427 (680)
Q Consensus       378 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  427 (680)
                      ||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.26  E-value=2.1e-08  Score=97.63  Aligned_cols=302  Identities=12%  Similarity=0.069  Sum_probs=209.1

Q ss_pred             HHHHHHHHh--CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256           79 NTMIRAYAN--NGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYA  156 (680)
Q Consensus        79 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~  156 (680)
                      ..+..++.+  .|+|..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+++.++.+..-.++..++-+......
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            345555544  689999999998887776554 23455556667788899999999988887644666677777778888


Q ss_pred             hcCChHHHHHHHhcC---CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 037256          157 KCGQTDDGCKVFDEM---SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAV  233 (680)
Q Consensus       157 ~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  233 (680)
                      ..|+.+.|+.-.++.   ..++........++|.+.|++.+.+.+...|.+.|+--|...                 .++
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l  227 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL  227 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH
Confidence            888888888776654   456777888888999999999999999998888876444321                 111


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256          234 HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP  310 (680)
Q Consensus       234 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (680)
                                 ...+++.+++-....+..+.-...++..+.   .++..-.+++.-+.+.|+.++|.++..+..+.+..|
T Consensus       228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~  296 (400)
T COG3071         228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP  296 (400)
T ss_pred             -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence                       011233333333333333444445555553   356666677778888888888888888888777666


Q ss_pred             CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256          311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY  390 (680)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~  390 (680)
                      +..+    +-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+..|+..+|+-+..+|
T Consensus       297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~  371 (400)
T COG3071         297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL  371 (400)
T ss_pred             hHHH----HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            6222    223455566655555555544432 34557788888888888888888888888877788888888888888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCC
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPD  414 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~  414 (680)
                      .+.|+..+|.+.+++....-.+|+
T Consensus       372 ~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         372 DQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHcCChHHHHHHHHHHHHHhcCCC
Confidence            888888888888887765434443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.25  E-value=2.4e-08  Score=97.20  Aligned_cols=281  Identities=15%  Similarity=0.128  Sum_probs=202.6

Q ss_pred             CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 037256          189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLV  268 (680)
Q Consensus       189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~  268 (680)
                      .|++.+|.++..+-.+.+-.| ...|.....+.-..||.+.+-.++.++-+..-.++..+.-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            366777777766655554322 3345555566667777777777777777665466666777777777888888888776


Q ss_pred             HHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhhhcchHHHHHHHHHH
Q 037256          269 FDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-------VTALILVSACTYLGSRQLGRKFHGYI  338 (680)
Q Consensus       269 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~i~~~~  338 (680)
                      .++..   .+++........+|.+.|++.+...++..|.+.|+--|+       .++..+++-+...+..+.-.+.++..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            66654   357778888888999999999999999999888765543       46677777666666666655566555


Q ss_pred             HHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256          339 INSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF  418 (680)
Q Consensus       339 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  418 (680)
                      .+. ...++.+-.+++.-+.++|+.++|.++..+..+...|..  -...-.+.+-++.+.-++..++-... .+-++-.+
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~  331 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL  331 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence            332 244566777888889999999999999888865555554  11222345667777777777666553 22233577


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+|-.-|.+.+.+.+|...|+...+  ..|+..+|+-+.++|.+.|+.++|.++.++.
T Consensus       332 ~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         332 STLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            7888889999999999999996665  5799999999999999999999999988764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.24  E-value=3.3e-07  Score=94.50  Aligned_cols=422  Identities=14%  Similarity=0.124  Sum_probs=272.6

Q ss_pred             hhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037256           36 GLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFP  114 (680)
Q Consensus        36 ~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  114 (680)
                      ..+...+..|-.        +++...++..+.+..+.|. ..|.....-.+...|+-++|.+..+.-.+..+. +.+.|.
T Consensus         9 ~lF~~~lk~yE~--------kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwH   79 (700)
T KOG1156|consen    9 ALFRRALKCYET--------KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWH   79 (700)
T ss_pred             HHHHHHHHHHHH--------HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHH
Confidence            455566777777        7787778887777777553 233333333455678899999988887776544 677888


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC
Q 037256          115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEK  191 (680)
Q Consensus       115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~  191 (680)
                      .+--.+...+++++|...+..+++.+ +.+...+.-|--.-++.|+++.....-....   ......|..++.++.-.|+
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            88777788889999999999988876 4556677666555566677666555544333   3456789999999999999


Q ss_pred             ccHHHHHHHHHHHcC-CCCCHhHHHHHH------HHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHH
Q 037256          192 PEEALILFQKTQQEG-LLSDSVTIVSVA------SAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK  264 (680)
Q Consensus       192 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~  264 (680)
                      +..|..+.++..+.. -.|+...|....      ......|.++.+.+.+...... +......--.-.+.+.+.+++++
T Consensus       159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEe  237 (700)
T KOG1156|consen  159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEE  237 (700)
T ss_pred             HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHh
Confidence            999999999987654 346666554433      2335667777777665543322 22223333455678889999999


Q ss_pred             HHHHHHhcCC--CChhHHHHHH-HHHHHcCChhHHH-HHHHHHHhCCCCCCHhhHHHH-HHHHhhhcchHHHHHHHHHHH
Q 037256          265 ARLVFDMMEK--RDLISWNSML-TGYIQNGQASEAL-LLFDEMQNSDCKPNPVTALIL-VSACTYLGSRQLGRKFHGYII  339 (680)
Q Consensus       265 A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~i~~~~~  339 (680)
                      |..++..+..  ||..-|+-.. .++.+-.+.-+++ .+|....+.  .|.......+ ++......-.+....++....
T Consensus       238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l  315 (700)
T KOG1156|consen  238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL  315 (700)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence            9999999876  4445554443 4443444444454 556555442  1111110000 111112222334445556666


Q ss_pred             HcCCCCchHHHHHHHHHHHHcCCHHH----HHHHHhhcCC------------CCCCHhHHHH--HHHHHHhcCChHHHHH
Q 037256          340 NSNMKIDATLRNAVMDMYAKCGDLDT----AENMFNDIHP------------SERNVSSWNV--LIAGYGMHGHGRKALE  401 (680)
Q Consensus       340 ~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~f~~~~~------------~~~~~~~~~~--li~~~~~~g~~~~A~~  401 (680)
                      +.|+++   ++..+...|-.-...+-    +..+...+..            ..|....|+.  ++..|-..|+++.|+.
T Consensus       316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~  392 (700)
T KOG1156|consen  316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE  392 (700)
T ss_pred             hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            777653   33334444432211111    1111222211            1455556654  5677889999999999


Q ss_pred             HHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          402 FFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       402 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .++....  ..|+.+ -|..=.+.+.+.|++++|..++++..+.+ .||...-+--+.-..|+.+.++|.++....
T Consensus       393 yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  393 YIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             HHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence            9999988  678876 66666788999999999999999998875 577666556667778999999999888776

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=1.4e-11  Score=86.39  Aligned_cols=50  Identities=28%  Similarity=0.602  Sum_probs=47.5

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037256           73 SYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS  122 (680)
Q Consensus        73 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  122 (680)
                      ||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.5e-07  Score=95.44  Aligned_cols=255  Identities=11%  Similarity=0.037  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k  359 (680)
                      ...-..-+-..+++.+.+++++...+.. ++....+..-|..+...|+..+-..+-..+++. .|..+.+|-++.--|.-
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence            3344455677889999999999988763 555555555666777777766666555556554 36778899999999999


Q ss_pred             cCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      .|+..+|++.|.+.....|. ...|-.....|+-.|..++|+..+...-+  +-|.. .-+.-+.--|.+.++.+.|.++
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            99999999999998545554 56899999999999999999999988776  33332 2333344568889999999999


Q ss_pred             HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC----CHhHHHHHHHHHHHH-----HHHHHHHH
Q 037256          438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP-----LPP----NDSVWGALLLACRIH-----GEIAANYL  503 (680)
Q Consensus       438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p----~~~~~~~ll~a~~~~-----~~~~~~~~  503 (680)
                      |.+..... +.|+...+-+.-.....+.+.+|..+|+..-     ..+    -..+|+.|-.+|++.     |...+++.
T Consensus       403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            99887642 4456667777777778889999999988751     111    234566777777776     67778999


Q ss_pred             HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      +.+.|.++.+|..++-+|...|+++.|++.|.+...
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=99.20  E-value=5.1e-09  Score=114.54  Aligned_cols=244  Identities=12%  Similarity=0.009  Sum_probs=171.5

Q ss_pred             ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHh---------hhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256          292 QASEALLLFDEMQNSDCKPN-PVTALILVSACT---------YLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG  361 (680)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g  361 (680)
                      ..++|.++|++..+.  .|+ ...+..+..++.         ..+++++|...++.+++.+ +.+...+..+..++...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            457888889888865  454 334444443332         2345788999999888876 557788888888999999


Q ss_pred             CHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 037256          362 DLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFA  439 (680)
Q Consensus       362 ~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~  439 (680)
                      ++++|...|++.....|+ ...|..+...+...|++++|+..+++..+  +.|+.. .+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            999999999998666665 66788888999999999999999999998  567643 33344445667899999999999


Q ss_pred             HhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHH-HHHHHH---HHHHHHHHccCCCCCchH
Q 037256          440 DMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLL-ACRIHG---EIAANYLFQLEPEHTGYF  514 (680)
Q Consensus       440 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-a~~~~~---~~~~~~~~~l~p~~~~~~  514 (680)
                      ++.+..-+-+...+..+...|...|++++|.+.++++ +..|+.......+. .+...+   ...++++++..-..+...
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~  510 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNP  510 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCc
Confidence            9876532224555777888899999999999999887 55566554444443 333333   333444444222222223


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          515 VLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       515 ~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ..+..+|+-.|+-+.+... +++.+.+
T Consensus       511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        511 GLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            3367778888887777766 7776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.15  E-value=4.8e-06  Score=85.90  Aligned_cols=476  Identities=10%  Similarity=0.082  Sum_probs=283.3

Q ss_pred             cCCCChHHHHHHhhhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256           53 TTYGEPNTARSLFNSIHNDKS---YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG  129 (680)
Q Consensus        53 ~~~g~~~~A~~~f~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  129 (680)
                      .+.|++..-+..|+.....-|   -...|...+.-..+.|-++-++.+|++-++.  .|.  .-.--+.-++..+++++|
T Consensus       113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~ea  188 (835)
T KOG2047|consen  113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEA  188 (835)
T ss_pred             HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHH
Confidence            344888999999987765544   2346888888888889999999999998764  332  245566777888999999


Q ss_pred             HHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCC--C--hhHHHHHHHHHHhCCCccHHH
Q 037256          130 KVVHGDIIRTG------FLSDSYVQAALVDMYAKCGQT---DDGCKVFDEMSVR--D--LVSWTVMITAYEQAEKPEEAL  196 (680)
Q Consensus       130 ~~~~~~~~~~g------~~~~~~~~~~Li~~~~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~  196 (680)
                      .+.++.++...      -+.+-..|..+-+..++.-+.   -....++..+..+  |  -..|++|...|.+.|.+++|-
T Consensus       189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar  268 (835)
T KOG2047|consen  189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR  268 (835)
T ss_pred             HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            88888776431      144556677666666654332   2344455555433  3  347999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhcc----------------CC------hHHHHHHHHHHHHccC-----------C
Q 037256          197 ILFQKTQQEGLLSDSVTIVSVASAVGQL----------------GD------VLKAQAVHGYAICNAF-----------L  243 (680)
Q Consensus       197 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~------~~~a~~~~~~~~~~g~-----------~  243 (680)
                      ++|++..+.-  .+...|+.+..+|+.-                ++      ++....-++.+.....           +
T Consensus       269 Dvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~  346 (835)
T KOG2047|consen  269 DVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP  346 (835)
T ss_pred             HHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence            9999887652  3333444444444321                11      1222222333322210           1


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---
Q 037256          244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEK---R------DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN---  311 (680)
Q Consensus       244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---  311 (680)
                      .++..|..-+..  ..|+..+-...|.+..+   |      -...|..+...|-.+|+.+.|..+|++..+...+--   
T Consensus       347 ~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL  424 (835)
T KOG2047|consen  347 HNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL  424 (835)
T ss_pred             ccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence            112222222211  12344444444444332   1      123577777777788888888888877765432111   


Q ss_pred             HhhHHHHHHHHhhhcchHHHHHHHHHHHHc-----------CCCC------chHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256          312 PVTALILVSACTYLGSRQLGRKFHGYIINS-----------NMKI------DATLRNAVMDMYAKCGDLDTAENMFNDIH  374 (680)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~k~g~~~~A~~~f~~~~  374 (680)
                      ..+|......=.+..+++.|..+.+.....           +.++      +..+|..+++.--..|-++....+++++.
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            112222222223445566666665554321           1111      23455566666667788888888888874


Q ss_pred             CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcC
Q 037256          375 PSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSH---AGLIDEGRKCFADMTKLSVKPE  449 (680)
Q Consensus       375 ~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~  449 (680)
                      +.. .++..--....-+-.+.-++++.+.+++-+..=-.|+.. .|+..|.-+.+   .-.++.|..+|++..+ |.+|.
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~  583 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE  583 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence            331 111111111122335566788888887655542335554 56666654432   3478999999999998 65554


Q ss_pred             hHHHHHHHHHHH----hcCCHHHHHHHHHhCC--CCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCch--H
Q 037256          450 VKHYACMVDMLG----RAGCLYEAFDMIKQMP--LPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGY--F  514 (680)
Q Consensus       450 ~~~~~~li~~~~----~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~--~  514 (680)
                      ..  .++--.|+    +-|....|+.++++..  .++.  ...||..|.--...     -+...+++++.-|++..-  .
T Consensus       584 ~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc  661 (835)
T KOG2047|consen  584 HA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC  661 (835)
T ss_pred             HH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence            32  22333343    4688889999999983  3332  23566666544333     366788999988876543  3


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          515 VLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       515 ~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      .-.+++-.+.|..+.|..++..-.+
T Consensus       662 lrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  662 LRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            3467778899999999999987654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=1.5e-08  Score=98.06  Aligned_cols=156  Identities=12%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhc
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMH  393 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~  393 (680)
                      .+...+...|+++.|.+.+....+.. +.+...+..+...|...|++++|.+.|++....   ......+..+...+...
T Consensus        70 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  148 (234)
T TIGR02521        70 ALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA  148 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence            33333344444444444444433332 223334444555555556666666666555322   11233455555566666


Q ss_pred             CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256          394 GHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       394 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  472 (680)
                      |++++|.+.+++..+.  .|+ ...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+
T Consensus       149 g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       149 GDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             CCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6666666666666653  333 335555556666666666666666666554 233445555556666666666666666


Q ss_pred             HHhC
Q 037256          473 IKQM  476 (680)
Q Consensus       473 ~~~m  476 (680)
                      .+.+
T Consensus       226 ~~~~  229 (234)
T TIGR02521       226 GAQL  229 (234)
T ss_pred             HHHH
Confidence            5543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.12  E-value=2.5e-08  Score=96.39  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=160.5

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                      .....+..+...|...|++++|.+.|++..+   .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3456778888999999999999999998754   356778888899999999999999999988764 445667777888


Q ss_pred             HHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256          321 ACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK  398 (680)
Q Consensus       321 a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~  398 (680)
                      .+...|++++|.+.+..+.+... +.....+..+...|.+.|++++|.+.|++.....| +...|..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            88999999999999999887532 23455677788899999999999999998855544 46678888899999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       399 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      |...+++..+. .+++...+..+...+...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999885 233455666777788889999999998887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-06  Score=84.31  Aligned_cols=299  Identities=10%  Similarity=-0.022  Sum_probs=206.0

Q ss_pred             CCCHhHHHHHHHHHhc--cCChHHHHHHHHHHHH-ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH-
Q 037256          208 LSDSVTIVSVASAVGQ--LGDVLKAQAVHGYAIC-NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSM-  283 (680)
Q Consensus       208 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l-  283 (680)
                      +|+..+....+.+++.  .++-..+.+.+-.+.+ .-++.|+....++.++|...|+.++|...|++...-|+.+..+| 
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            3444444445555443  3444444444444433 34677888999999999999999999999999877665554443 


Q ss_pred             --HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256          284 --LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG  361 (680)
Q Consensus       284 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g  361 (680)
                        .-.+.+.|+.++...+...+.... +-+...|..-+...-...+++.|..+-...++.+ +.+...+-.-..++...|
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence              234567889998888888776532 1222233333344456678888888888777655 334444444456778889


Q ss_pred             CHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHH
Q 037256          362 DLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSIL-SACS-HAGLIDEGRKCF  438 (680)
Q Consensus       362 ~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~  438 (680)
                      +.++|.-.|+......| +..+|.-|+..|...|++.+|.-+-+..... +.-+..+.+.+- ..|. ...--++|..++
T Consensus       349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~  427 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA  427 (564)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence            99999999998865654 6889999999999999999999888876663 344555655442 3333 233457888888


Q ss_pred             HHhhhcCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCC
Q 037256          439 ADMTKLSVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHT  511 (680)
Q Consensus       439 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~  511 (680)
                      ++-.+.  .|+ ....+.+...+.+.|+.++++.++++. ...||....+.|-.-.+..     +...+..++.++|+|.
T Consensus       428 ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  428 EKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             Hhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            887754  444 345567778899999999999999886 6678887777766655543     5666778888899874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.2e-06  Score=89.56  Aligned_cols=430  Identities=11%  Similarity=0.092  Sum_probs=239.9

Q ss_pred             HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 037256           82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA--LVDMYA--K  157 (680)
Q Consensus        82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~~~--~  157 (680)
                      +..+..+|.+++|.....++...+ +-+...+..-+-+..+.+.+++|..+.+   ..+.   ..+++.  +=.+|+  +
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence            344566778888888888887654 2245556666666777777777774432   2211   111111  233443  6


Q ss_pred             cCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHH
Q 037256          158 CGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVSVASAVGQLGDVLKAQAVHGY  236 (680)
Q Consensus       158 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~  236 (680)
                      .+..++|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-...    .+ +   .
T Consensus        92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~---~  163 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q---L  163 (652)
T ss_pred             cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---H
Confidence            7888899888885555555566666777888899999999999987765432111 111122111110    00 0   1


Q ss_pred             HHHccCCCChhHHHH---HHHHHHhcCCHHHHHHHHHhc--------CCCC-----hh-----HHHHHHHHHHHcCChhH
Q 037256          237 AICNAFLEDLCIQNS---IVAMYARCGNVEKARLVFDMM--------EKRD-----LI-----SWNSMLTGYIQNGQASE  295 (680)
Q Consensus       237 ~~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~  295 (680)
                      +......| ..+|..   ....+...|++.+|+++++..        .+.|     +.     .---|.-.+...|+.++
T Consensus       164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence            11111122 222222   344667889999999988877        1111     11     11224456778899999


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHH---HHHHhhhcchHH--HHHHH------------HHHHHcCCCCchHHHHHHHHHHH
Q 037256          296 ALLLFDEMQNSDCKPNPVTALIL---VSACTYLGSRQL--GRKFH------------GYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~--a~~i~------------~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      |.+++...+... .+|.......   |-+.....++-.  ....+            ..+.+. -......-+.++.+|.
T Consensus       243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            999999998775 4554222111   122222111111  11111            111110 0111222345556654


Q ss_pred             HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG-MHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~  435 (680)
                        +..+.+.++-.......|....=+.+..++. +...+.+|.+++...-+.  .|..  +.....+......|+++.|.
T Consensus       321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~  396 (652)
T KOG2376|consen  321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL  396 (652)
T ss_pred             --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence              4566777777766433455444444444433 223577888888777663  4444  34445556678899999999


Q ss_pred             HHHH--------HhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHhHHHHHHHH---HH-HH---
Q 037256          436 KCFA--------DMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-----PLPPNDSVWGALLLA---CR-IH---  495 (680)
Q Consensus       436 ~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~a---~~-~~---  495 (680)
                      +++.        ...+.+..|  .+-..++..|.+.++-+.|-+++.+.     .-.+......+++.-   +- ++   
T Consensus       397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~  474 (652)
T KOG2376|consen  397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE  474 (652)
T ss_pred             HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence            9998        554444444  45566788888887766555555443     011122222222221   11 11   


Q ss_pred             --HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 037256          496 --GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLRED  536 (680)
Q Consensus       496 --~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  536 (680)
                        +...++++++.+|++....+.++.+|++.. .+.|+.+-+.
T Consensus       475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~  516 (652)
T KOG2376|consen  475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK  516 (652)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence              455677888899999999999999998764 4566555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1e-07  Score=96.61  Aligned_cols=264  Identities=13%  Similarity=0.067  Sum_probs=167.4

Q ss_pred             CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256          174 RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV  253 (680)
Q Consensus       174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li  253 (680)
                      .|+...-.-..-+...+++.+.+++++...+.. +++...+..-|..+...|+..+-..+-..+++. .+....+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence            355555666677778889999999998887763 455555555566666777766655555555554 466788889999


Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      -.|.-.|+.++|++.|.+...-|   ...|-.....|+-.|..++|+..+...-+.- +-...-+.-+.--|.+.++++.
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence            98988999999999999876543   3679999999999999999999887765431 1111111222234566777788


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-------C-CHhHHHHHHHHHHhcCChHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-------R-NVSSWNVLIAGYGMHGHGRKALEF  402 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-------~-~~~~~~~li~~~~~~g~~~~A~~l  402 (680)
                      |.++|.+..... +.|+.+.+-+.-+..+.+.+.+|...|+......       + -..+++.|..+|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            888877776543 5567777777777777777777777777652110       0 112344455555555555555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          403 FSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       403 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      +++.+.. .+-|..|+.++.-.+...|+++.|.+.|.+..
T Consensus       478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            5555542 12233344444444555555555555554433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.10  E-value=1.7e-05  Score=82.05  Aligned_cols=451  Identities=14%  Similarity=0.145  Sum_probs=257.8

Q ss_pred             hHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 037256           58 PNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRS-GISSNSYTFPFVLKACASNSLILEGKVVHGDI  136 (680)
Q Consensus        58 ~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  136 (680)
                      ++.+......||..      |-.-+.-+..+|+.......|++.+.. .+.-....|...+......+-.+.+..+++..
T Consensus        91 ~er~lv~mHkmpRI------wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY  164 (835)
T KOG2047|consen   91 FERCLVFMHKMPRI------WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY  164 (835)
T ss_pred             HHHHHHHHhcCCHH------HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence            44555555666654      888888888999999999999887653 23334567888888888888888899999888


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----------hhHHHHHHHHHHhCCCccH---HHHHHHHHH
Q 037256          137 IRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD----------LVSWTVMITAYEQAEKPEE---ALILFQKTQ  203 (680)
Q Consensus       137 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~---A~~~~~~m~  203 (680)
                      ++..    +..-+..|..+++.+++++|.+.+..+...|          -..|..+-...+++-+.-.   ...+++.+.
T Consensus       165 Lk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi  240 (835)
T KOG2047|consen  165 LKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI  240 (835)
T ss_pred             HhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence            8653    3335667778888999999998888776432          2345555554444433222   222333322


Q ss_pred             HcCCCCCH--hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH-H---hcCCCCh
Q 037256          204 QEGLLSDS--VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF-D---MMEKRDL  277 (680)
Q Consensus       204 ~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f-~---~m~~~~~  277 (680)
                      .  .-+|.  ..|.+|..-|.+.|.++.|..++++.+..-  ..+.-++.+-+.|+....-.-+..+= .   .-.+.+.
T Consensus       241 ~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~  316 (835)
T KOG2047|consen  241 R--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD  316 (835)
T ss_pred             c--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence            2  12332  234555555555555555555555554432  12222333333333321111111000 0   0000011


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----------CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC----
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSD-----------CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN----  342 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~----  342 (680)
                      ..             ++-.+.-|+.+...+           -+-+..+|..-..  ...|+..+-...+.++++.-    
T Consensus       317 ~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~k  381 (835)
T KOG2047|consen  317 VD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKK  381 (835)
T ss_pred             hh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCccc
Confidence            11             122223333333221           0112222322222  23345556666666666531    


Q ss_pred             -CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------
Q 037256          343 -MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG------  410 (680)
Q Consensus       343 -~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------  410 (680)
                       .-.-...|..+.+.|-..|+++.|..+|++..... +.    ...|-.-...=.++.+++.|+++.+.....-      
T Consensus       382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~  461 (835)
T KOG2047|consen  382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE  461 (835)
T ss_pred             CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence             11224567888888999999999999998884432 22    2345555555567788888888887765421      


Q ss_pred             ----CCC-------CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037256          411 ----VKP-------DHITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P  477 (680)
Q Consensus       411 ----~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~  477 (680)
                          -.|       +...|...+.--...|-++....+++++.+..+ .|.+..--  ...+-...-++++.+++++- +
T Consensus       462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny--AmfLEeh~yfeesFk~YErgI~  539 (835)
T KOG2047|consen  462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY--AMFLEEHKYFEESFKAYERGIS  539 (835)
T ss_pred             hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHhhHHHHHHHHHHHcCCc
Confidence                111       112344444545566788888889999888733 44433221  22345566788999999885 3


Q ss_pred             C--CCCH-hHHHHHHHHHHHH--------HHHHHHHHHccCCCCC--chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          478 L--PPND-SVWGALLLACRIH--------GEIAANYLFQLEPEHT--GYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       478 ~--~p~~-~~~~~ll~a~~~~--------~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      +  -|+. ..|++.|.-+...        ++..++++++..|...  ..|.+.+.+--+-|.-..|.+++++...
T Consensus       540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            2  2444 4799988887666        6777888888877432  2344444455566888888888888643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=2e-07  Score=88.97  Aligned_cols=404  Identities=13%  Similarity=0.088  Sum_probs=202.3

Q ss_pred             CChHHHHHHhhhccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256           56 GEPNTARSLFNSIHNDK----SYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV  131 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  131 (680)
                      .++..|+.+++--....    .++..|  +...+.+.|++++|+..|.-+.+.. .|+...+..|.-...-.|.+.+|++
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence            67777777766443321    022223  4455667788888888887776643 4455555555555555677777777


Q ss_pred             HHHHHHHhCCCCchhHHHH-HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 037256          132 VHGDIIRTGFLSDSYVQAA-LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD  210 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~-Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  210 (680)
                      +-...      |+....+. |...-.+.|+-++-...-+.+.+. ..---+|.+..-..-.+.+|+++|++.+..  .|+
T Consensus       113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e  183 (557)
T KOG3785|consen  113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE  183 (557)
T ss_pred             HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence            65432      33333333 334444556555544444443321 122223333333344577788888877765  345


Q ss_pred             HhHHHHHHHHH-hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh--cCCHHHH--HHHHHhcCCCChhHHHHHHH
Q 037256          211 SVTIVSVASAV-GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR--CGNVEKA--RLVFDMMEKRDLISWNSMLT  285 (680)
Q Consensus       211 ~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~--~g~~~~A--~~~f~~m~~~~~~~~~~li~  285 (680)
                      -...+.-+..| .+..-++-+.+++.-.++. ++.+....|....-..+  .|+..++  .++-+.+.+.    | ..+.
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~  257 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIE  257 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHH
Confidence            55555544433 4555555566665554443 23334444443333333  2322221  1222222111    0 0111


Q ss_pred             HHHHc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHH-----H
Q 037256          286 GYIQN-----GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVM-----D  355 (680)
Q Consensus       286 ~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li-----~  355 (680)
                      -.++.     .+-+.|++++-.+.+.  -|..  -..++--+.+.++.++|..+.+.+.  ...|...+...++     .
T Consensus       258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQ  331 (557)
T KOG3785|consen  258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQ  331 (557)
T ss_pred             HHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhh
Confidence            11111     1234455444433321  1211  1122223444455555444433221  0112222222221     1


Q ss_pred             HHHHcCCHHHHHHHHhhcCCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 037256          356 MYAKCGDLDTAENMFNDIHPS--ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLID  432 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  432 (680)
                      -......+.-|.+.|+-.-++  .- ++.--.+|.+.+.-..++++.+-.++....- +..|...-..+..+.+..|++.
T Consensus       332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~  410 (557)
T KOG3785|consen  332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYV  410 (557)
T ss_pred             hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChH
Confidence            111122345566666655222  12 2333456666777777788888887777664 3333333335677888889999


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhH
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSV  484 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~  484 (680)
                      +|.++|-......++-+..-...|.++|.++++++-|++++-++....+..+
T Consensus       411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs  462 (557)
T KOG3785|consen  411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS  462 (557)
T ss_pred             HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH
Confidence            9999887766544443443344566888899999999999888753334433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=1.2e-06  Score=83.87  Aligned_cols=444  Identities=11%  Similarity=0.073  Sum_probs=252.3

Q ss_pred             HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 037256           82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQT  161 (680)
Q Consensus        82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~  161 (680)
                      +.-+..+.++..|+.+++--...+-.-...+-.-+...+...|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            34455667888888887765543322222222233344557888888888888777644 56666776677666677888


Q ss_pred             HHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHcc
Q 037256          162 DDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNA  241 (680)
Q Consensus       162 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  241 (680)
                      .+|..+-...+. ++..-..|...-.+.++-++-+.+-..+...     ...-.++.+..-....+.+|.+++..++..+
T Consensus       108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888887665542 2222233344444555555555544444321     1112223333333445677777777766543


Q ss_pred             CCCChhHHH-HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 037256          242 FLEDLCIQN-SIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALI  317 (680)
Q Consensus       242 ~~~~~~~~~-~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  317 (680)
                        |+-...| -+.-+|.|..-++-+.++++--..  | +++.-|.......+.=+..-|.+-.+.+.+.+-..    |--
T Consensus       182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f  255 (557)
T KOG3785|consen  182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPF  255 (557)
T ss_pred             --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chh
Confidence              2222222 123356677766666666554332  2 34444444443333322233333333333322111    101


Q ss_pred             HHHHHh----hhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HH-
Q 037256          318 LVSACT----YLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAG-YG-  391 (680)
Q Consensus       318 ll~a~~----~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~-  391 (680)
                      .-..|.    -...-+.|.+++--+.+.  -|  ..--.|+--|.+.+++.+|..+..++.+..|-......+..+ +. 
T Consensus       256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQ  331 (557)
T KOG3785|consen  256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQ  331 (557)
T ss_pred             HHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhh
Confidence            111111    112234455554333321  12  222345566899999999999999985555543333322221 11 


Q ss_pred             ---hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256          392 ---MHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY  467 (680)
Q Consensus       392 ---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  467 (680)
                         ......-|.+.|+-.-+++..-|.+ ---++.+++.-..++++.+.+++....--..-|...+| +..+++..|.+.
T Consensus       332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~  410 (557)
T KOG3785|consen  332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYV  410 (557)
T ss_pred             hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChH
Confidence               1122444555555544555444433 23345555566677889998888887654344555554 678999999999


Q ss_pred             HHHHHHHhCC--CCCCHhHHHHHHHHHHHH---HHHHHHHHHccCCC-CC-chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          468 EAFDMIKQMP--LPPNDSVWGALLLACRIH---GEIAANYLFQLEPE-HT-GYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       468 ~A~~~~~~m~--~~p~~~~~~~ll~a~~~~---~~~~~~~~~~l~p~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      +|+++|-++.  --.|..+|.+++.-|..+   -+.+.+.++..+.+ +. .....+++-|.+++.+=-|.+.|+.+...
T Consensus       411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l  490 (557)
T KOG3785|consen  411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL  490 (557)
T ss_pred             HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence            9999998873  224789999999999888   56677777776533 22 33456788899999999999999999875


Q ss_pred             CCC
Q 037256          541 GLK  543 (680)
Q Consensus       541 g~~  543 (680)
                      +..
T Consensus       491 DP~  493 (557)
T KOG3785|consen  491 DPT  493 (557)
T ss_pred             CCC
Confidence            543

>PRK12370 invasion protein regulator; Provisional

Probab=99.08  E-value=6.6e-08  Score=105.85  Aligned_cols=207  Identities=7%  Similarity=-0.049  Sum_probs=113.6

Q ss_pred             CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256          261 NVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY  337 (680)
Q Consensus       261 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~  337 (680)
                      ++++|...+++..+   .+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35666666666543   245556666666666666666666666666543 22344555555666666666666666666


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256          338 IINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH  415 (680)
Q Consensus       338 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  415 (680)
                      +.+.... +...+..++..+...|++++|...+++.... .| +...+..+...|...|+.++|...+.++..  ..|+.
T Consensus       398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~  474 (553)
T PRK12370        398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITG  474 (553)
T ss_pred             HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchh
Confidence            6665422 2222223333455567777777777665322 23 344456666667777777777777776655  34554


Q ss_pred             HHHH-HHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          416 ITFT-SILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       416 ~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+.. .+...+...|  +.+...++.+.+. .-.|.-..+..++  |.-.|+.+.+..+ +++
T Consensus       475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~  532 (553)
T PRK12370        475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKF  532 (553)
T ss_pred             HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHh
Confidence            4333 3333445555  4666666665554 3233333333333  4445555555554 555

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.07  E-value=2.7e-08  Score=99.58  Aligned_cols=210  Identities=16%  Similarity=0.083  Sum_probs=147.2

Q ss_pred             chHHHHHHHHHHHHcC-CCC--chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHH
Q 037256          327 SRQLGRKFHGYIINSN-MKI--DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEF  402 (680)
Q Consensus       327 ~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l  402 (680)
                      ..+.+..-+..++... ..|  ....+..+...|.+.|+.++|...|++.....| +...|+.+...|...|++++|...
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4455555555555422 222  245677788889999999999999998866655 477899999999999999999999


Q ss_pred             HHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 037256          403 FSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--PLP  479 (680)
Q Consensus       403 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~  479 (680)
                      |++..+  +.|+. .++..+..++...|++++|.+.|+...+.  .|+..........+...++.++|.+.+++.  ...
T Consensus       121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence            999988  67765 47777778888899999999999998875  343322222222345677899999999654  233


Q ss_pred             CCHhHHHHHHHHHHHH--HHHHHHHHH-------ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          480 PNDSVWGALLLACRIH--GEIAANYLF-------QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       480 p~~~~~~~ll~a~~~~--~~~~~~~~~-------~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      |+...|. +...+...  ...+++.+.       ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus       197 ~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        197 KEQWGWN-IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             ccccHHH-HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4433332 21111111  122333333       4567777899999999999999999999999998754

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.07  E-value=2.5e-06  Score=88.81  Aligned_cols=354  Identities=16%  Similarity=0.184  Sum_probs=197.3

Q ss_pred             HHHHHHHhcCChHHHHHHHhcC--CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCh
Q 037256          150 ALVDMYAKCGQTDDGCKVFDEM--SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDV  227 (680)
Q Consensus       150 ~Li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  227 (680)
                      +-|..|.+.|....|.+.-..-  ...|......+..++.+..-+++|=++|+++..         +.-.+..+-+...+
T Consensus       620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf  690 (1636)
T KOG3616|consen  620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF  690 (1636)
T ss_pred             HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence            3466777777776666553221  123444444455555555555666666655432         11122222222223


Q ss_pred             HHHHHHHHHHHHccCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256          228 LKAQAVHGYAICNAFLEDLCI-QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS  306 (680)
Q Consensus       228 ~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (680)
                      .+|.++-...    ++..++. -.....-+...|+++.|..-|-+...     .---|.+-.....|.+|+.+++.++..
T Consensus       691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdq  761 (1636)
T KOG3616|consen  691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQ  761 (1636)
T ss_pred             HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence            3333332221    1222111 12233344455666666665544321     112344556677888888888877764


Q ss_pred             CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 037256          307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVL  386 (680)
Q Consensus       307 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~l  386 (680)
                      .  .-.--|..+..-|+..|+++.|.++|-..         ..++--|+||.+.|++++|.++-.+...++.....|-+-
T Consensus       762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak  830 (1636)
T KOG3616|consen  762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK  830 (1636)
T ss_pred             c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence            3  22334666777888888888888887543         234566788888888888888888775445555666665


Q ss_pred             HHHHHhcCChHHHHHHHH-------------------HHHHc--CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          387 IAGYGMHGHGRKALEFFS-------------------QMLEE--GVKPDH--ITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       387 i~~~~~~g~~~~A~~l~~-------------------~m~~~--g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ..-+-.+|++.+|.++|-                   .|++.  ...|+.  .|-..+..-+...|++..|.+.|-+.. 
T Consensus       831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-  909 (1636)
T KOG3616|consen  831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-  909 (1636)
T ss_pred             HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-
Confidence            555566666666655441                   11110  123333  255556666777788888877775543 


Q ss_pred             cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHhHHHHHHHHH------HHHH--H---------HHHHH
Q 037256          444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPL----PPNDSVWGALLLAC------RIHG--E---------IAANY  502 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~a~------~~~~--~---------~~~~~  502 (680)
                              -|.+-+.+|-..+.+++|.++-+.-+-    +.-...|.--|++-      -+||  +         -+++-
T Consensus       910 --------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~  981 (1636)
T KOG3616|consen  910 --------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF  981 (1636)
T ss_pred             --------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence                    356677888888888888888765521    11122343322221      1111  0         01122


Q ss_pred             HHc-----cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          503 LFQ-----LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       503 ~~~-----l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      +++     .....+..+..++--+...|++++|.+-+-+..+.+
T Consensus       982 afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  982 AFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             HHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            222     233446778888888999999999988887776643

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.02  E-value=6.7e-06  Score=86.81  Aligned_cols=396  Identities=13%  Similarity=0.093  Sum_probs=245.4

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH-HH
Q 037256          140 GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT-IV  215 (680)
Q Consensus       140 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~  215 (680)
                      .+.-|..+|..|.-+...+|+++.+-+.|++...   .....|+.+...|...|.-..|+.+++.-....-.|+..+ +.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            4567889999999999999999999999998753   3456899999999999999999999987765443354443 43


Q ss_pred             HHHHHHh-ccCChHHHHHHHHHHHHc--cC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHHhcCC---CC
Q 037256          216 SVASAVG-QLGDVLKAQAVHGYAICN--AF--LEDLCIQNSIVAMYARCG-----------NVEKARLVFDMMEK---RD  276 (680)
Q Consensus       216 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~m~~---~~  276 (680)
                      ..-+.|. +.+..+++..+-.+++..  +.  ......+-.+.-+|...-           ...++...+++..+   .|
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3344444 457788888777777662  11  122334444444444321           12345556666533   23


Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-CCCCchHHHHHHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-NMKIDATLRNAVMD  355 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~  355 (680)
                      +...--+---|+-.++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |.  |-.....-+.
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~  555 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH  555 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence            33322333446677889999999999888765677777877777788888888888887766542 21  0000000111


Q ss_pred             HHHHcCCHHHHHHH--------------------------HhhcC---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256          356 MYAKCGDLDTAENM--------------------------FNDIH---PSERN-VSSWNVLIAGYGMHGHGRKALEFFSQ  405 (680)
Q Consensus       356 ~y~k~g~~~~A~~~--------------------------f~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~  405 (680)
                      .-..-++.++|...                          +..+.   +...+ +.++..+..-..  -+.+.+..-.. 
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-  632 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-  632 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-
Confidence            11122333333222                          22110   00111 112222211111  11111100000 


Q ss_pred             HHHcCCCCCH--------HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256          406 MLEEGVKPDH--------ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-  476 (680)
Q Consensus       406 m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-  476 (680)
                      |...-+.|..        ..|......+...+..++|...+.+..+.. +.....|......+...|.++||.+.|... 
T Consensus       633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence            2211122322        134455567788899999998888877642 445666777778888999999999988775 


Q ss_pred             CCCCCHhHHHHHHHHHHHH------HHH--HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          477 PLPPNDSVWGALLLACRIH------GEI--AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       477 ~~~p~~~~~~~ll~a~~~~------~~~--~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      -+.|+.+--.+-++.+...      +..  ....+++++|.|+..+..|+.++-+.|+.++|.+-|.....-.
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            6788766544444444333      333  6678889999999999999999999999999999999887643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.99  E-value=2.5e-07  Score=96.76  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----C--CCc
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEE----G--VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----S--VKP  448 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~--~~p  448 (680)
                      +++.|...|.+.|++++|.+++++.+..    +  ..+. ...++.+..+|.+.+.+++|.++|.+...-    |  .+-
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~  448 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence            5666666666667777666666665532    1  1222 235566666666666666666666553321    1  122


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          449 EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ...+|..|...|.+.|++++|.++.+..
T Consensus       449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  449 VTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            2456667777777777777777666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.97  E-value=4.4e-07  Score=94.91  Aligned_cols=225  Identities=17%  Similarity=0.210  Sum_probs=110.5

Q ss_pred             hHHHHHHHHhhhcchHHHHHHHHHHHHc-----CC-CCch-HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CC---
Q 037256          314 TALILVSACTYLGSRQLGRKFHGYIINS-----NM-KIDA-TLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ER---  378 (680)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~---  378 (680)
                      |+..+...|...|+++.|...++..++.     |. .|.+ ...+.+...|...+++++|..+|+++...     .+   
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444445555555555555555544432     10 1111 12223445555556665555555554211     11   


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc---CCC
Q 037256          379 N-VSSWNVLIAGYGMHGHGRKALEFFSQMLE-----EGVKP-DHI-TFTSILSACSHAGLIDEGRKCFADMTKL---SVK  447 (680)
Q Consensus       379 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~  447 (680)
                      . ..+++.|...|.+.|++++|...+++..+     .|..+ ... -++.+...|...+.+++|..+++...+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            1 23445555556666666655555554432     11111 111 3444444555666666666655554432   111


Q ss_pred             cC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHHH-----HHHHHH----HHH
Q 037256          448 PE----VKHYACMVDMLGRAGCLYEAFDMIKQM---------PLPPN-DSVWGALLLACRIH-----GEIAAN----YLF  504 (680)
Q Consensus       448 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~a~~~~-----~~~~~~----~~~  504 (680)
                      ++    ..+++.|...|...|++++|++++++.         +..+. ....+-|-.+|...     +...+.    .+.
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            11    245556666666666666666665554         00111 12233333344222     111111    122


Q ss_pred             ccCCCC---CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256          505 QLEPEH---TGYFVLMSNIYAASNKWREVGKLREDMK  538 (680)
Q Consensus       505 ~l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~  538 (680)
                      ...|+.   ..+|..|+.+|...|++++|.++.+...
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            234444   4568889999999999999999999876

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=3.7e-08  Score=92.94  Aligned_cols=229  Identities=16%  Similarity=0.143  Sum_probs=172.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256          281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC  360 (680)
Q Consensus       281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~  360 (680)
                      +-|..+|.+.|.+.+|.+.|+.-.+.  .|-..||..+-.+|.+...++.|..++..-++.- +.|+....-+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            56778888888888888888887765  5666677777788888888888888887776542 55666666677778888


Q ss_pred             CCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256          361 GDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA  439 (680)
Q Consensus       361 g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  439 (680)
                      ++.++|.++++...+..| |+.+...+..+|.-.++++-|+..++++.+.|+. +...|+.+.-+|...+++|-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            888899999888865544 5667777777888889999999999999988865 55667777778888888888888888


Q ss_pred             HhhhcCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHH
Q 037256          440 DMTKLSVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLM  517 (680)
Q Consensus       440 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l  517 (680)
                      +....--.|+  ..+|-.+.......|++.-|.+.                           ++..+.-+|++.+.++.|
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc---------------------------frlaL~~d~~h~ealnNL  435 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC---------------------------FRLALTSDAQHGEALNNL  435 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHH---------------------------HHHHhccCcchHHHHHhH
Confidence            7766532233  33454454444555555544444                           444556688999999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC
Q 037256          518 SNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       518 ~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      +-+-.+.|+.++|..++....+.
T Consensus       436 avL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  436 AVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhcCchHHHHHHHHHhhhh
Confidence            99999999999999999988764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.92  E-value=2.8e-06  Score=89.61  Aligned_cols=423  Identities=13%  Similarity=0.084  Sum_probs=227.4

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND-KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSY-  111 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-  111 (680)
                      |..+|..|.=+... |      |+++.+.+.|++...- --....|+.+-..++..|.-..|+.+++.-......|+.. 
T Consensus       322 d~ai~d~Lt~al~~-~------g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  322 DAAIFDHLTFALSR-C------GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             hHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            88889888888888 9      9999999999876543 1134579999999999999889999988765543335433 


Q ss_pred             cHHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhc-----------CChHHHHHHHhcCCCC-
Q 037256          112 TFPFVLKACA-SNSLILEGKVVHGDIIRTG--F--LSDSYVQAALVDMYAKC-----------GQTDDGCKVFDEMSVR-  174 (680)
Q Consensus       112 t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~~~~~-----------g~~~~A~~~f~~~~~~-  174 (680)
                      .+-..-+.|. +.+.++++...-..++...  .  ...+..+-.+.-+|...           ....++.+.+++..+. 
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            3333334454 4466777777666666521  1  11223333333333321           1122333344433211 


Q ss_pred             --ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHH
Q 037256          175 --DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSI  252 (680)
Q Consensus       175 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L  252 (680)
                        |..+--.+.--|+..++.+.|++..++..+.+-.-+...|..+...++..+++.+|+.+.+.....- +.|......-
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~  553 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK  553 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence              1111111222234445555555555555554444444555555555555555555555544443210 0000000001


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhhhcc-hH
Q 037256          253 VAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP--NPVTALILVSACTYLGS-RQ  329 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~-~~  329 (680)
                      +..-.+.++.++|......+..    .|... .+..+.++-...+++...+.-.--.|  ...|+..+..-....+. ..
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence            1111122333333322221110    00000 00111122222222222221110011  11222222221111100 00


Q ss_pred             HHHHHHHHHHHcCCCCc--------hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256          330 LGRKFHGYIINSNMKID--------ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~--------~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  400 (680)
                      -...    +.+....|.        ...|....+.+.+.+..++|...+.+.....| ....|+.....+...|+.++|.
T Consensus       629 se~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~  704 (799)
T KOG4162|consen  629 SELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK  704 (799)
T ss_pred             cccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence            0000    111111111        34566677888888999999877777644433 3556777777788889999999


Q ss_pred             HHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHH--HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          401 EFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRK--CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       401 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +.|.....  +.|+.+ ..+++...+...|+..-+..  ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|+..
T Consensus       705 ~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  705 EAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            99998888  889886 78888888999998777776  888888876 667888999999999999999998888764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2.8e-05  Score=79.79  Aligned_cols=43  Identities=19%  Similarity=0.044  Sum_probs=22.7

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELY   98 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~   98 (680)
                      |++++|.+..+.+....| |...+..=+-++.+.+.+++|+.+.
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i   69 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI   69 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence            556666665555555544 3334444445555555566555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=1.1e-07  Score=89.74  Aligned_cols=233  Identities=13%  Similarity=0.118  Sum_probs=191.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHH
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTA-LILVSA  321 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a  321 (680)
                      |-.--+-+..+|.+.|-+.+|++.|+...+  +-+.+|-.|-..|.+..+++.|+.+|.+-.+.  .|-.+|+ ......
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI  299 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence            334447788999999999999999988754  67788989999999999999999999988875  5655655 456677


Q ss_pred             HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHH
Q 037256          322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~  400 (680)
                      +...+..+.+.++++...+.. +.++....++...|.-.++.+.|...++++... -.+...|+.+.-+|.-.++++-++
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence            888899999999999998875 556666667777888889999999999998544 467888999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037256          401 EFFSQMLEEGVKPDHI--TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P  477 (680)
Q Consensus       401 ~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~  477 (680)
                      .-|.+.+..--.|+..  .|-.+-......|++..|.+.|+-....+ .-+.+.++.|.-.-.|.|++++|..+++.. .
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            9999998876667764  56666666778899999999999887754 456778888888889999999999999877 3


Q ss_pred             CCCC
Q 037256          478 LPPN  481 (680)
Q Consensus       478 ~~p~  481 (680)
                      ..|+
T Consensus       458 ~~P~  461 (478)
T KOG1129|consen  458 VMPD  461 (478)
T ss_pred             hCcc
Confidence            4454

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.83  E-value=9.8e-06  Score=86.01  Aligned_cols=141  Identities=17%  Similarity=0.158  Sum_probs=101.5

Q ss_pred             CCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          378 RNVSSW--NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       378 ~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      |....|  .-+...|-..|++++|++++++.++  ..|..+ .|..-...+-+.|++++|.+.++...... .-|...-+
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs  266 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS  266 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence            444445  5567778899999999999999999  678865 78888889999999999999999999875 45667777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLR  534 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~  534 (680)
                      -.+..+.|+|++++|.+++..... ++......|...-+                 .-...--+.+|.+.|++..|.+.+
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc-----------------~Wf~~e~a~a~~r~~~~~~ALk~~  328 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLFTR-EDVDPLSNLNDMQC-----------------MWFETECAEAYLRQGDYGLALKRF  328 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhcC-CCCCcccCHHHHHH-----------------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            788889999999999999887632 22111111110000                 112334567778888888887777


Q ss_pred             HHHHh
Q 037256          535 EDMKN  539 (680)
Q Consensus       535 ~~m~~  539 (680)
                      ..+.+
T Consensus       329 ~~v~k  333 (517)
T PF12569_consen  329 HAVLK  333 (517)
T ss_pred             HHHHH
Confidence            66643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.82  E-value=4.1e-06  Score=88.88  Aligned_cols=284  Identities=11%  Similarity=0.027  Sum_probs=172.1

Q ss_pred             HHHHhcCChHHHHHHHhcCCC--CChhH-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-cc----
Q 037256          153 DMYAKCGQTDDGCKVFDEMSV--RDLVS-WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG-QL----  224 (680)
Q Consensus       153 ~~~~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~----  224 (680)
                      ..+...|++++|++.+++-..  .|..+ .......+.+.|+.++|..+|+.+++.+  |+...|...+..+. ..    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence            445677888888888766543  24443 3556677777788888888888887764  56666555444443 11    


Q ss_pred             -CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCh-hHHHHHHHH
Q 037256          225 -GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQA-SEALLLFDE  302 (680)
Q Consensus       225 -~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~  302 (680)
                       .+.+.-.++++.+...-  |.                               ..+...+.-.+.....+ ..+...+..
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~-------------------------------s~~~~rl~L~~~~g~~F~~~~~~yl~~  136 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PR-------------------------------SDAPRRLPLDFLEGDEFKERLDEYLRP  136 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--cc-------------------------------ccchhHhhcccCCHHHHHHHHHHHHHH
Confidence             12233333333332221  10                               00000011111111112 233445556


Q ss_pred             HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc--------------CCCCchH--HHHHHHHHHHHcCCHHHH
Q 037256          303 MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS--------------NMKIDAT--LRNAVMDMYAKCGDLDTA  366 (680)
Q Consensus       303 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--------------~~~~~~~--~~~~li~~y~k~g~~~~A  366 (680)
                      +...|+++   +|+.+-..|......+...+++......              .-+|...  ++.-+...|-..|++++|
T Consensus       137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A  213 (517)
T PF12569_consen  137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA  213 (517)
T ss_pred             HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            66667554   3334444444444444444444433321              1134443  445667888899999999


Q ss_pred             HHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          367 ENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       367 ~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .+..++.....|+ +..|..-...|-+.|++.+|.+.++....  +.+. ...-+-....+.+.|++++|.+++....+.
T Consensus       214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            9999998777776 66788888899999999999999999988  4444 445555666788999999999999988877


Q ss_pred             CCCcChHHH--------HHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 SVKPEVKHY--------ACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 ~~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +..|....+        .--..+|.|.|++..|++.|..+
T Consensus       292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            544433222        33457899999999998877655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=4.4e-06  Score=88.21  Aligned_cols=385  Identities=14%  Similarity=0.107  Sum_probs=232.0

Q ss_pred             hhhhHHHHHH--hhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhC-C-----
Q 037256           34 TSGLINQALH--LGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRS-G-----  105 (680)
Q Consensus        34 ~~~~~~~li~--~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-----  105 (680)
                      |..+-.++++  +|.- .      |+.+.|.+..+.+...    +.|..|.+.|.+.++.+-|.-.+-.|... |     
T Consensus       725 d~~TRkaml~FSfyvt-i------G~MD~AfksI~~IkS~----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR  793 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVT-I------GSMDAAFKSIQFIKSD----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR  793 (1416)
T ss_pred             CHHHHHhhhceeEEEE-e------ccHHHHHHHHHHHhhh----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence            6666677765  4555 5      9999998888777654    57999999999999888877776666321 1     


Q ss_pred             ---CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhHHHH
Q 037256          106 ---ISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR-DLVSWTV  181 (680)
Q Consensus       106 ---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~  181 (680)
                         -.|+ .+=..+.-.....|.+++|+.++.+..+.+         .|=..|...|.+++|.++-+.-..- =..+|..
T Consensus       794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~  863 (1416)
T KOG3617|consen  794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN  863 (1416)
T ss_pred             HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence               1222 222333333467899999999999887754         2445677889999999886543221 1235655


Q ss_pred             HHHHHHhCCCccHHHHHHHHHH----------HcC---------CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256          182 MITAYEQAEKPEEALILFQKTQ----------QEG---------LLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF  242 (680)
Q Consensus       182 li~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  242 (680)
                      -...+-..++.+.|++.|++..          ...         -.-|...|.......-..|+.+.|..++..+..   
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---  940 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---  940 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence            6666666777888888776532          111         012333444444455566777777776665443   


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037256          243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC  322 (680)
Q Consensus       243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  322 (680)
                            |-+++...+-.|+.++|-++-++-  .|......+.+.|-..|++.+|..+|.+.+         +|...|+.|
T Consensus       941 ------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen  941 ------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred             ------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence                  345666666677777777776643  456667778889999999999999998765         344444444


Q ss_pred             hhhcc---------------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc------------CC
Q 037256          323 TYLGS---------------RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI------------HP  375 (680)
Q Consensus       323 ~~~g~---------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~------------~~  375 (680)
                      -..+-               .-.|..+|++   .|..     ..--+..|-|.|.+.+|+++--+-            ..
T Consensus      1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred             HhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence            33222               2222223322   2211     122345688888888887652211            12


Q ss_pred             CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcCh----
Q 037256          376 SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEV----  450 (680)
Q Consensus       376 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~----  450 (680)
                      ...|+...+.-..-|+.+.++++|..++-...+         |...+..|...| +.-..++-+.|.-. .-.|+.    
T Consensus      1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred             CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHH
Confidence            244666677777778888888888888766554         344444444433 22222222223211 112322    


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256          451 KHYACMVDMLGRAGCLYEAFDMIKQMP  477 (680)
Q Consensus       451 ~~~~~li~~~~~~g~~~~A~~~~~~m~  477 (680)
                      .....+.+.+.+.|.+..|-+-|.+.+
T Consensus      1146 ~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhhhh
Confidence            234455566666666666666555553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3e-05  Score=76.11  Aligned_cols=263  Identities=10%  Similarity=-0.027  Sum_probs=123.5

Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT-IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV  253 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li  253 (680)
                      |+.....+...+...|+.++|+..|++.+-.  .|+..+ ...-.-.+...|+.+....+...+....- ....-|-.-.
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~  307 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA  307 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence            4455555555555555555555555554432  122211 00011112334444444444333332210 0001111111


Q ss_pred             HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      ......++++.|..+-++..+.   ++..+-.-...+.+.|+.++|.-.|+..+... +-+...|..++..|...|.+.+
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence            1222334455555555544432   22223222334555555666655555554421 2244455556666555555555


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHH-HHHH-HcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVM-DMYA-KCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li-~~y~-k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      |...-....+. ++.+..+.+.+. +.+. ...--++|.+++++.....|+ ....+.+...+...|..+.++.++++-.
T Consensus       387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L  465 (564)
T KOG1174|consen  387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL  465 (564)
T ss_pred             HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            55444443332 122223322221 1111 112235666666666555555 3345555556666666666666666666


Q ss_pred             HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          408 EEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       408 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .  ..||....+.|...+...+.+++|.+.|....+.
T Consensus       466 ~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  466 I--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             h--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            6  5666666666666666666667776666666543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.79  E-value=2.1e-06  Score=77.79  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=145.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256          281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC  360 (680)
Q Consensus       281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~  360 (680)
                      .-|.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+.|+..++.. +.+..+.|.....+|..
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence            345556777777777777777777653 3344566666667777777777777777776655 45677888889999999


Q ss_pred             CCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 037256          361 GDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRK  436 (680)
Q Consensus       361 g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~  436 (680)
                      |++++|...|++....   ..-..+|..+.-+..+.|+.+.|.+.|++..+  ..|+. .+...+.......|++-.|..
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999987332   12356788888888899999999999999998  56665 478888888899999999999


Q ss_pred             HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +++.....+ .++.......|..--+.|+-+.|.++=..+
T Consensus       195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999888775 388888888888888888888776654444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.77  E-value=4.4e-05  Score=79.30  Aligned_cols=231  Identities=12%  Similarity=0.072  Sum_probs=123.2

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHH
Q 037256          121 ASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALI  197 (680)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  197 (680)
                      ...+++..+....+.+++ +++....+.....-.+...|+-++|......-..   ++.+.|..+.-.+-...++++|++
T Consensus        18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence            345667777777777776 3344444444333344566788888777665543   355678888888888889999999


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 037256          198 LFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDL  277 (680)
Q Consensus       198 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~  277 (680)
                      .|+.....+ +-|...+-.+.-.-++.++++..........+.                                ....-
T Consensus        97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------------------------------~~~~r  143 (700)
T KOG1156|consen   97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------------------------------RPSQR  143 (700)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------------------------hhhhH
Confidence            998887653 223333333322223333333333222222221                                11233


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHH------HHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSD-CKPNPVTALILVS------ACTYLGSRQLGRKFHGYIINSNMKIDATLR  350 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~  350 (680)
                      ..|.....++.-.|+...|..++++..+.. -.|+...+.....      .....|.++.+.+........ +......-
T Consensus       144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~  222 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE  222 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence            456666666666666666666666665443 2344443332221      223444555554444332211 11122222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVL  386 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~l  386 (680)
                      ..-.+.+.+.+++++|..++..+....||..-|+-.
T Consensus       223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~  258 (700)
T KOG1156|consen  223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG  258 (700)
T ss_pred             hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence            334456667777777777777775556665554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.76  E-value=3.4e-05  Score=83.66  Aligned_cols=180  Identities=11%  Similarity=0.013  Sum_probs=88.8

Q ss_pred             CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      .+...|...|-+..+..|+ ...|..|...|...-+...|...|++..+... .+..........+++..+++.|..+.-
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            4455666666555555332 33566666666655566666666666655432 244555556666666666666665511


Q ss_pred             HHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 037256          135 DIIRTG-FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD  210 (680)
Q Consensus       135 ~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  210 (680)
                      ..-+.. ...-..-|..+.-.|.+.++...|..-|+....   .|...|..+..+|...|++..|+++|.+....  .|+
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~  628 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL  628 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence            111100 000111222233334555666666665554432   24555666666666666666666666555442  232


Q ss_pred             HhHHHHHH--HHHhccCChHHHHHHHHHHHH
Q 037256          211 SVTIVSVA--SAVGQLGDVLKAQAVHGYAIC  239 (680)
Q Consensus       211 ~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~  239 (680)
                      . +|....  -.-+..|.+.++...++.++.
T Consensus       629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            2 121111  122344555565555555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.1e-05  Score=79.97  Aligned_cols=425  Identities=14%  Similarity=0.051  Sum_probs=210.3

Q ss_pred             CCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHH
Q 037256           54 TYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN-SYTFPFVLKACASNSLILEGKV  131 (680)
Q Consensus        54 ~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~  131 (680)
                      +.|+++.|...|-+.....| |.+.|..-..+|+..|++++|++=-.+-++.  .|+ ...|+-.-.+..-.|++++|..
T Consensus        14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~   91 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL   91 (539)
T ss_pred             ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence            34999999999998888866 8889999999999999999998877766654  454 4568888888888999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHHhcCCCCChhHHHHHH-----HHHHhCCCccHHHHHHHHHHHc
Q 037256          132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDD-GCKVFDEMSVRDLVSWTVMI-----TAYEQAEKPEEALILFQKTQQE  205 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~-A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~  205 (680)
                      .|..-++.. +.+...++.|.+++    ..+. +.+.|.     ++..|..+.     +.+...-.+..-++.+++    
T Consensus        92 ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~----  157 (539)
T KOG0548|consen   92 AYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK----  157 (539)
T ss_pred             HHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc----
Confidence            998877764 45667778888777    1111 112221     112222111     111111111111111110    


Q ss_pred             CCCCCH-hH---HHHHHHHHhccCChHHHHHHHHHHHHcc-------CCCChhHHHHHHHHHHhcCC-HHHHHHHHHhcC
Q 037256          206 GLLSDS-VT---IVSVASAVGQLGDVLKAQAVHGYAICNA-------FLEDLCIQNSIVAMYARCGN-VEKARLVFDMME  273 (680)
Q Consensus       206 g~~p~~-~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~  273 (680)
                        .|+. ..   ...++.+.......+..     .....|       ..|...    -.......++ .++.+.      
T Consensus       158 --~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~------  220 (539)
T KOG0548|consen  158 --NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV------  220 (539)
T ss_pred             --CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccc----cCCCCCccchhHHHHHH------
Confidence              0100 00   00111111110000000     000000       000000    0000000000 000000      


Q ss_pred             CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC------ch
Q 037256          274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKI------DA  347 (680)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~------~~  347 (680)
                      ..-..-...+.++.-+..+++.|++-+....+..  -+..-++..-.++...|........-...++.|-..      =.
T Consensus       221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa  298 (539)
T KOG0548|consen  221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA  298 (539)
T ss_pred             HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence            0001112334444444455555555555544432  122222223333444444443333333332222110      00


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACS  426 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~  426 (680)
                      .....+..+|.+.++++.|...|.+.....++....       .+....+++++......-  +.|... -...-.+.+.
T Consensus       299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~F  369 (539)
T KOG0548|consen  299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAF  369 (539)
T ss_pred             HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHH
Confidence            111123446777778888888887764333332221       122334555555544444  444442 1222245667


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHH----HHH--HHHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLAC----RIH--GEIA  499 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~----~~~--~~~~  499 (680)
                      +.|++..|...+.++++.. +-|...|..-.-+|.+.|.+.+|++=.+.. .+.|+...--.--+.+    ...  +.++
T Consensus       370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888877765 566777777777888888888777655544 3444432211111111    111  5677


Q ss_pred             HHHHHccCCCCCchHHHHHHHHHh
Q 037256          500 ANYLFQLEPEHTGYFVLMSNIYAA  523 (680)
Q Consensus       500 ~~~~~~l~p~~~~~~~~l~~~~~~  523 (680)
                      +.+.++++|++......+...+..
T Consensus       449 y~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  449 YQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHH
Confidence            778888888887766666665544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.74  E-value=3.3e-06  Score=84.59  Aligned_cols=56  Identities=20%  Similarity=0.099  Sum_probs=24.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          250 NSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       250 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      ..+...|.+.|+.++|...|++..+   .+...|+.+...+...|++++|...|++..+
T Consensus        68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3333344444444444444444332   1334444444444444444444444444443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.68  E-value=0.0004  Score=81.90  Aligned_cols=368  Identities=10%  Similarity=-0.008  Sum_probs=192.3

Q ss_pred             HHHHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256          153 DMYAKCGQTDDGCKVFDEMSVRDLVS--WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA  230 (680)
Q Consensus       153 ~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  230 (680)
                      ..|...|++.+|..........+...  ...........|+++.+...+..+.......+..........+...|+++++
T Consensus       349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a  428 (903)
T PRK04841        349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV  428 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence            34555666666666555554332211  1112233445666666666665542211111222222333444566778887


Q ss_pred             HHHHHHHHHccCC------CC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHHcCChh
Q 037256          231 QAVHGYAICNAFL------ED--LCIQNSIVAMYARCGNVEKARLVFDMMEK----RDL----ISWNSMLTGYIQNGQAS  294 (680)
Q Consensus       231 ~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~  294 (680)
                      ...+..+...--.      +.  ......+...+...|++++|...+++...    .+.    ..++.+...+...|+++
T Consensus       429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~  508 (903)
T PRK04841        429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA  508 (903)
T ss_pred             HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence            7777766443111      11  11222233455677888888777776432    121    23455555667788888


Q ss_pred             HHHHHHHHHHhCCC---CCC--HhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CCC---CchHHHHHHHHHHHHcCC
Q 037256          295 EALLLFDEMQNSDC---KPN--PVTALILVSACTYLGSRQLGRKFHGYIINS----NMK---IDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       295 ~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~---~~~~~~~~li~~y~k~g~  362 (680)
                      +|...+++.....-   .+.  ..+...+...+...|+++.|...+......    +..   .....+..+...+...|+
T Consensus       509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~  588 (903)
T PRK04841        509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR  588 (903)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence            88887777653211   111  223444455666778888887777665432    211   112334445556666788


Q ss_pred             HHHHHHHHhhcCCC----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHccCC
Q 037256          363 LDTAENMFNDIHPS----ER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PDHITF-----TSILSACSHAGL  430 (680)
Q Consensus       363 ~~~A~~~f~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~  430 (680)
                      +++|...+++....    .+  ....+..+...+...|+.++|.+.+.+.....-. .....+     ...+..+...|+
T Consensus       589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  668 (903)
T PRK04841        589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD  668 (903)
T ss_pred             HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence            88877777665221    11  1223444555666777888887777776542100 001101     011233344677


Q ss_pred             HHHHHHHHHHhhhcCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccC
Q 037256          431 IDEGRKCFADMTKLSVKPE---VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLE  507 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~  507 (680)
                      .+.|.+.+...........   ...+..+..++...|+.++|...+++.-            ...         .-....
T Consensus       669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al------------~~~---------~~~g~~  727 (903)
T PRK04841        669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN------------ENA---------RSLRLM  727 (903)
T ss_pred             HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHH---------HHhCch
Confidence            7777777665443211111   0112345556677777777777666541            000         000011


Q ss_pred             CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          508 PEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       508 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      +.....+..++.+|...|+.++|...+.+..+..
T Consensus       728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            1123456778889999999999999999887643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.67  E-value=7.8e-05  Score=77.38  Aligned_cols=296  Identities=13%  Similarity=0.016  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCHhHH-HHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHH---HH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGL-LSDSVTI-VSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQN---SI  252 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L  252 (680)
                      .|..+...+...|+++++...+.+..+... .++.... ......+...|+++++..++..+.+.. +.|...++   .+
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence            444444555555555555444444433211 1121111 111222344566666666666655543 22332322   11


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256          253 VAMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ  329 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (680)
                      .......+..+.+.+.++.....   .......+...+...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence            11122234455555555442222   22333445556777888888888888887653 334555666677777788888


Q ss_pred             HHHHHHHHHHHcCC-CCch--HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHH----H--HHHHHHHhcCChHHHH
Q 037256          330 LGRKFHGYIINSNM-KIDA--TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSW----N--VLIAGYGMHGHGRKAL  400 (680)
Q Consensus       330 ~a~~i~~~~~~~~~-~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~----~--~li~~~~~~g~~~~A~  400 (680)
                      +|...+....+... .++.  ..+..+...+...|++++|..+|++.....|....+    +  .++.-+...|....+.
T Consensus       166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  245 (355)
T cd05804         166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD  245 (355)
T ss_pred             HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence            88888777765432 1222  334567788888999999999998874333311111    1  2233333444332222


Q ss_pred             HHHHHHHHcC--CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC--------cChHHHHHHHHHHHhcCCHH
Q 037256          401 EFFSQMLEEG--VKPD---HITFTSILSACSHAGLIDEGRKCFADMTKLSVK--------PEVKHYACMVDMLGRAGCLY  467 (680)
Q Consensus       401 ~l~~~m~~~g--~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~  467 (680)
                      +. +.+....  ..|+   .........++...|+.++|..+++.+....-.        ..+...-...-++.+.|+.+
T Consensus       246 ~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~  324 (355)
T cd05804         246 RW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA  324 (355)
T ss_pred             HH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence            22 2221110  1111   122234566778889999999999888764211        01222223334456899999


Q ss_pred             HHHHHHHhC
Q 037256          468 EAFDMIKQM  476 (680)
Q Consensus       468 ~A~~~~~~m  476 (680)
                      +|.+.+...
T Consensus       325 ~A~~~L~~a  333 (355)
T cd05804         325 TALELLGPV  333 (355)
T ss_pred             HHHHHHHHH
Confidence            999888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.67  E-value=5.6e-05  Score=78.44  Aligned_cols=193  Identities=9%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGI-SSNSYT-FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA--  150 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--  150 (680)
                      ...|..+...+...|+++++...+.+..+... .++... .......+...|++++|...++..++.. +.|...++.  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            44566666777777888887777766654321 112111 1111223456788888888888887764 334434331  


Q ss_pred             -HHHHHHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 037256          151 -LVDMYAKCGQTDDGCKVFDEMSVRD---LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGD  226 (680)
Q Consensus       151 -Li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  226 (680)
                       +.......+..+.+.+.++.....+   ...+..+...+...|++++|.+.+++..+..  |                 
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p-----------------  145 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--P-----------------  145 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-----------------
Confidence             1122222345555555554422211   2233344455666666777777666666542  2                 


Q ss_pred             hHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChhHHHHH
Q 037256          227 VLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR-----DL--ISWNSMLTGYIQNGQASEALLL  299 (680)
Q Consensus       227 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~~  299 (680)
                                       .+...+..+...|...|++++|...+++....     +.  ..|..+...+...|++++|..+
T Consensus       146 -----------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         146 -----------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             -----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence                             22333344445555555555555555544321     11  2244555666667777777777


Q ss_pred             HHHHH
Q 037256          300 FDEMQ  304 (680)
Q Consensus       300 ~~~m~  304 (680)
                      +++..
T Consensus       209 ~~~~~  213 (355)
T cd05804         209 YDTHI  213 (355)
T ss_pred             HHHHh
Confidence            76664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.67  E-value=0.00071  Score=69.08  Aligned_cols=129  Identities=8%  Similarity=0.038  Sum_probs=87.2

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      |+..|+.||.-+..        ...++++..++++....| ....|..-|..-....+++....+|.+-+..-.  +...
T Consensus        19 di~sw~~lire~qt--------~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDL   88 (656)
T KOG1914|consen   19 DIDSWSQLIREAQT--------QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDL   88 (656)
T ss_pred             cHHHHHHHHHHHcc--------CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhH
Confidence            88899999987665        789999999999998888 566899999999999999999999998776432  4555


Q ss_pred             HHHHHHHHhc-cCChHHH----HHHHHHH-HHhCCCCc-hhHHHHHHHHH---------HhcCChHHHHHHHhcCC
Q 037256          113 FPFVLKACAS-NSLILEG----KVVHGDI-IRTGFLSD-SYVQAALVDMY---------AKCGQTDDGCKVFDEMS  172 (680)
Q Consensus       113 ~~~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~Li~~~---------~~~g~~~~A~~~f~~~~  172 (680)
                      |..-|.--.+ .++....    .+.|+.. .+.|.++- -..|+..+...         ....+++..++++.++.
T Consensus        89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral  164 (656)
T KOG1914|consen   89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL  164 (656)
T ss_pred             HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence            6555554332 2233222    2333333 34465443 34566665543         33456777788888775

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.63  E-value=1.7e-06  Score=85.37  Aligned_cols=218  Identities=11%  Similarity=0.050  Sum_probs=105.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhhcchH
Q 037256          251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP-NPVTALILVSACTYLGSRQ  329 (680)
Q Consensus       251 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~  329 (680)
                      -+.++|...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......+ +..........+...|+++
T Consensus        40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~  119 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE  119 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence            344555555655544333333233333333333222222233344444444333322221 2222222223344556666


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHH---HHHHHHHHhcCChHHHHHHHHHH
Q 037256          330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSW---NVLIAGYGMHGHGRKALEFFSQM  406 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m  406 (680)
                      .|.++....      .+.......+.+|.+.++++.|.+.++.|.+...|....   .+.+..+.-.+.+.+|..+|+++
T Consensus       120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El  193 (290)
T PF04733_consen  120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL  193 (290)
T ss_dssp             HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            665554321      234445556667777777777777777775444443322   12222222223567777777776


Q ss_pred             HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 037256          407 LEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL-YEAFDMIKQM  476 (680)
Q Consensus       407 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m  476 (680)
                      .+. ..++..+.+.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++.++
T Consensus       194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            543 45666666777777777777777777777665442 33445555566665666666 4555666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.63  E-value=0.00028  Score=74.04  Aligned_cols=36  Identities=11%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             HHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256          502 YLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       502 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      ..+.........++.-+.-+..+|+|..|...+-++
T Consensus      1146 ~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1146 EALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred             HHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence            344455555667777778888899999888877666

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=0.00091  Score=71.40  Aligned_cols=205  Identities=15%  Similarity=0.109  Sum_probs=137.4

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC-----------CCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND-----------KSYSFLWNTMIRAYANNGHCVETLELYSTMR  102 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  102 (680)
                      +-.+|..+-+|+.+ .      .+++-|.-.+-.|.+.           .|+ ..=....-.-.+.|..++|..+|++-+
T Consensus       756 S~~vW~nmA~McVk-T------~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck  827 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVK-T------RRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK  827 (1416)
T ss_pred             hhHHHHHHHHHhhh-h------ccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77899999999999 8      8888777766666432           232 111111112246788999999999887


Q ss_pred             hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----------
Q 037256          103 RSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS----------  172 (680)
Q Consensus       103 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~----------  172 (680)
                      +.         ..|=+.|-..|.+++|.++-+.--+..+.   .+|-....-+-..++.+.|++.|++..          
T Consensus       828 R~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL  895 (1416)
T KOG3617|consen  828 RY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML  895 (1416)
T ss_pred             HH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence            63         33445566788999998886543332221   233333344445678888888887653          


Q ss_pred             -------------CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256          173 -------------VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC  239 (680)
Q Consensus       173 -------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  239 (680)
                                   .+|...|.-....+-..|+.+.|+.+|...+.         |.++++..+-.|+.++|.++-++   
T Consensus       896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---  963 (1416)
T KOG3617|consen  896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---  963 (1416)
T ss_pred             HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---
Confidence                         13555666666666677999999999887654         56677777788888888877654   


Q ss_pred             ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256          240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME  273 (680)
Q Consensus       240 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~  273 (680)
                         .-|....--|.++|-..|++.+|..+|-+..
T Consensus       964 ---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  964 ---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               2355555667888888888888888887654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.61  E-value=5.5e-05  Score=82.12  Aligned_cols=468  Identities=12%  Similarity=0.064  Sum_probs=244.7

Q ss_pred             cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccCChH
Q 037256           51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA--CASNSLIL  127 (680)
Q Consensus        51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~  127 (680)
                      +|.+.++...|..-|+...+..| |..+|..+..+|.+.|++..|+++|.+....  .|+. +|.....+  -+..|.+.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence            44555667777777777766666 6677888888888888888888888776553  3332 33333222  24566777


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCChHHHHHHHhcCCC-----------CChhHHHHHHHHHHhC
Q 037256          128 EGKVVHGDIIRTGFLSDSYVQAALVDMYA-------KCGQTDDGCKVFDEMSV-----------RDLVSWTVMITAYEQA  189 (680)
Q Consensus       128 ~a~~~~~~~~~~g~~~~~~~~~~Li~~~~-------~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~  189 (680)
                      ++...++.++... .......+.|...+.       ..|-...|...|+.-.+           .|...|-.+-      
T Consensus       648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as------  720 (1238)
T KOG1127|consen  648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS------  720 (1238)
T ss_pred             HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh------
Confidence            7777776665431 111112222222222       22333333333332211           1122222221      


Q ss_pred             CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCh---H---HHHHHHHHHHHccCCCChhHHHHHHHHHHh----c
Q 037256          190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDV---L---KAQAVHGYAICNAFLEDLCIQNSIVAMYAR----C  259 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~  259 (680)
                          .|..+|-+.. .. .|+......+..-.-..+..   +   .|-+.+..-.+  +..+...|..|+..|.+    +
T Consensus       721 ----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l  792 (1238)
T KOG1127|consen  721 ----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL  792 (1238)
T ss_pred             ----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence                2333333322 11 23322222222212222222   1   11111111111  22234444444444433    2


Q ss_pred             C----CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHH
Q 037256          260 G----NVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR  332 (680)
Q Consensus       260 g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  332 (680)
                      |    +...|...+....   ..+...||+|.-. ...|++.-|...|-+-.... +-...+|..+--.|....+++.|.
T Consensus       793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~  870 (1238)
T KOG1127|consen  793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE  870 (1238)
T ss_pred             CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence            2    2345666666554   3577888877665 55577777777776655542 445667777777778888888888


Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc-----CC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256          333 KFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI-----HP-SERNVSSWNVLIAGYGMHGHGRKALEFFSQM  406 (680)
Q Consensus       333 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~-----~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  406 (680)
                      +.+....... +.+...|--.....-..|+.-++..+|..-     .. .-++..-|-.-..-..++|+.++-+...+.+
T Consensus       871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki  949 (1238)
T KOG1127|consen  871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI  949 (1238)
T ss_pred             HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence            8888776554 334444443333344567777777777652     11 1344445544444455666666555444333


Q ss_pred             HHc---------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHH----HHHHhcCCHHHHHHH
Q 037256          407 LEE---------GVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMV----DMLGRAGCLYEAFDM  472 (680)
Q Consensus       407 ~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li----~~~~~~g~~~~A~~~  472 (680)
                      -..         |.+-+...|........+.+.++.|.+...++... ..+.+...|+...    +.+...|.++.|..-
T Consensus       950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen  950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred             hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence            221         23334457777777777888888887777765543 3345555565433    344556778877666


Q ss_pred             HHhCCCCCCHhHHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHH---HHHHHHhcCChhHHHHHHHHHHh
Q 037256          473 IKQMPLPPNDSVWGALLLACRIH----GEIAANYLFQLEPEHTGYFVL---MSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       473 ~~~m~~~p~~~~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      +...+..-|.-+-.+-++.+...    ....+++++.+.-++...-++   ++.....++.-+.|...+-+...
T Consensus      1030 ~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             hcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            65554444444444444443333    566777777765554443233   33344556666777666555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=8.7e-06  Score=83.38  Aligned_cols=248  Identities=15%  Similarity=0.123  Sum_probs=181.8

Q ss_pred             hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHH
Q 037256          222 GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALL  298 (680)
Q Consensus       222 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~  298 (680)
                      .+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+   .|....-+|.-.|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            46688888888888888875 55778888888888888888888888888765   356677777788999999999999


Q ss_pred             HHHHHHhCCCC--------CCHhhHHHHHHHHhhhcchHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 037256          299 LFDEMQNSDCK--------PNPVTALILVSACTYLGSRQLGRKFHGY-IINSNMKIDATLRNAVMDMYAKCGDLDTAENM  369 (680)
Q Consensus       299 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~i~~~-~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~  369 (680)
                      .|+.-.....+        ++..+-..  ........+....++|-. ....+..+|+.+...|.-.|--.|++++|...
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            99887653210        01000000  112222233444444444 44566668999999999999999999999999


Q ss_pred             HhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc---
Q 037256          370 FNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL---  444 (680)
Q Consensus       370 f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~---  444 (680)
                      |+.....+| |...||-|...++...+.++|+..|++.++  ++|+.+ ....|.-+|...|.+++|...|-..+..   
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999977777 477899999999999999999999999999  899986 4445666899999999999988776542   


Q ss_pred             C------CCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 037256          445 S------VKPEVKHYACMVDMLGRAGCLYEAFDMIK  474 (680)
Q Consensus       445 ~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~  474 (680)
                      +      -.++...|.+|=.++.-.++.|-+.+...
T Consensus       531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~  566 (579)
T KOG1125|consen  531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP  566 (579)
T ss_pred             ccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence            1      11223466666666666666665544443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=4.9e-05  Score=71.41  Aligned_cols=293  Identities=16%  Similarity=0.125  Sum_probs=153.9

Q ss_pred             cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHH
Q 037256          224 LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLL  299 (680)
Q Consensus       224 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~  299 (680)
                      .+++..+..+.++...   +.+..+.+.......+.|+++.|.+-|....+    .....||.-+. .-+.|+++.|+++
T Consensus       125 e~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~  200 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKH  200 (459)
T ss_pred             cccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHH
Confidence            3444444444444321   12333444444455677777777777776654    23455665444 3466778888888


Q ss_pred             HHHHHhCCCCCCHhh-HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--
Q 037256          300 FDEMQNSDCKPNPVT-ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--  376 (680)
Q Consensus       300 ~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--  376 (680)
                      ..+..++|++-.+.- ......+- ....+..-..++...       -+..+|.-...+.+.|+++.|.+.+-.|.+.  
T Consensus       201 iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE  272 (459)
T KOG4340|consen  201 ISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE  272 (459)
T ss_pred             HHHHHHhhhhcCCccCccceeccC-chhcccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence            888887775422110 00000000 000000000111110       1223444455677899999999999999543  


Q ss_pred             -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHH
Q 037256          377 -ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHY  453 (680)
Q Consensus       377 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~  453 (680)
                       +.|++|...+.-. -..+++.+..+-+.-+.+.  .| ...||..++-.|++..-++-|-.++.+-...-+ -.+...|
T Consensus       273 ~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly  349 (459)
T KOG4340|consen  273 EELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY  349 (459)
T ss_pred             ccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH
Confidence             4567776554332 2345566666666666663  44 345999999999999999988888765332211 1223333


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH-----------HHHHHHHHccCCCC----CchHHHH
Q 037256          454 ACMVDMLG-RAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG-----------EIAANYLFQLEPEH----TGYFVLM  517 (680)
Q Consensus       454 ~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~-----------~~~~~~~~~l~p~~----~~~~~~l  517 (680)
                      +. ++++. ..-..++|++-++.+.        ..+..-.++-+           ..+.+++++--.+.    -.+....
T Consensus       350 ~L-LdaLIt~qT~pEea~KKL~~La--------~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~  420 (459)
T KOG4340|consen  350 DL-LDALITCQTAPEEAFKKLDGLA--------GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQ  420 (459)
T ss_pred             HH-HHHHHhCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32 33333 3345566655554431        11111111111           11222222110000    1245567


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC
Q 037256          518 SNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       518 ~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      +++|++..++..++++|..-.+-
T Consensus       421 AkiyW~~~Dy~~vEk~Fr~Svef  443 (459)
T KOG4340|consen  421 AKIYWNLEDYPMVEKIFRKSVEF  443 (459)
T ss_pred             HHhhccccccHHHHHHHHHHHhh
Confidence            78899999999999999876653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.60  E-value=1.5e-05  Score=72.37  Aligned_cols=189  Identities=16%  Similarity=0.040  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 037256          179 WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR  258 (680)
Q Consensus       179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~  258 (680)
                      ...|.-+|.+.|++..|.+-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+-.+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            3344455555555555555555555432 1223344444444455555555555555554443 2334455555555566


Q ss_pred             cCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          259 CGNVEKARLVFDMMEK-R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       259 ~g~~~~A~~~f~~m~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                      .|++++|...|++... |    -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            6666666666655443 2    23455555555566666666666666655542 2223334444444444455555555


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      +++.....+. ++..+.-..|..-...|+.+.|.+.=.
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            5544444332 444444444444444444444444333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.9e-05  Score=80.28  Aligned_cols=214  Identities=14%  Similarity=0.115  Sum_probs=140.6

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHh--------HHHHH
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVS--------SWNVL  386 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~--------~~~~l  386 (680)
                      ...+.++..+..+++.+.+-+.......  .+..-++....+|...|.+..+...-+...+......        +...+
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3455666667777888888887777665  5666677777888888877776665555422222211        12223


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH-HHHHHHHHHHhcCC
Q 037256          387 IAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK-HYACMVDMLGRAGC  465 (680)
Q Consensus       387 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~  465 (680)
                      ..+|.+.++++.|+..|.+....-..||..+         +....+++....+...-  +.|... -...=...+.+.|+
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence            4466677888888888888776544444322         22233344433333322  223321 11112566788999


Q ss_pred             HHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256          466 LYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK  538 (680)
Q Consensus       466 ~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  538 (680)
                      +.+|+..+.++ ...|+....-+=..+|...      |..-.++.++++|+....|..-+.++....+|++|.+.+.+-.
T Consensus       374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 5567665554444555443      5666789999999999999999999999999999999999887


Q ss_pred             hCC
Q 037256          539 NKG  541 (680)
Q Consensus       539 ~~g  541 (680)
                      +.+
T Consensus       454 e~d  456 (539)
T KOG0548|consen  454 ELD  456 (539)
T ss_pred             hcC
Confidence            654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.49  E-value=0.00017  Score=85.12  Aligned_cols=322  Identities=13%  Similarity=0.082  Sum_probs=190.4

Q ss_pred             HHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC------CCCHh--HHHHHHHHHh
Q 037256          155 YAKCGQTDDGCKVFDEMSV----RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL------LSDSV--TIVSVASAVG  222 (680)
Q Consensus       155 ~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~~  222 (680)
                      ....|+++.+...++.++.    .+..........+...|++++|...+......--      .+...  ....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            4456777777777776642    1232333444555677888888888877644210      11111  1122223445


Q ss_pred             ccCChHHHHHHHHHHHHccCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHH
Q 037256          223 QLGDVLKAQAVHGYAICNAFLEDL----CIQNSIVAMYARCGNVEKARLVFDMMEK-------RD--LISWNSMLTGYIQ  289 (680)
Q Consensus       223 ~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~  289 (680)
                      ..|+++.+...+......-...+.    ...+.+...+...|++++|...+++...       +.  ..++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            678888888888877653212221    2345566677788888888888777642       11  2344555667778


Q ss_pred             cCChhHHHHHHHHHHh----CCCC--C-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CCCCchHHHHHHHHHHH
Q 037256          290 NGQASEALLLFDEMQN----SDCK--P-NPVTALILVSACTYLGSRQLGRKFHGYIINS----NMKIDATLRNAVMDMYA  358 (680)
Q Consensus       290 ~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~y~  358 (680)
                      .|++++|...+++...    .+..  + ....+..+...+...|+++.|...+......    +.......+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            8888888888777654    2211  1 2233444455566778888888887776542    21112334445666778


Q ss_pred             HcCCHHHHHHHHhhcCCC---CCCHhHH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHc
Q 037256          359 KCGDLDTAENMFNDIHPS---ERNVSSW-----NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI---TFTSILSACSH  427 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~---~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~  427 (680)
                      ..|+.++|.+.++.....   ......+     ...+..+...|+.+.|.+.+.+...........   .+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            888888888887766221   1111111     112244556788888888876654321111111   13455567778


Q ss_pred             cCCHHHHHHHHHHhhhc----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          428 AGLIDEGRKCFADMTKL----SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       428 ~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .|+.++|...+++....    |..++ ..+...+..++.+.|+.++|.+.+.+.
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888888877653    33322 345566677788889988888888776

>PF12854 PPR_1: PPR repeat

Probab=98.48  E-value=2.4e-07  Score=58.26  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256          241 AFLEDLCIQNSIVAMYARCGNVEKARLVFDMME  273 (680)
Q Consensus       241 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~  273 (680)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677888888888888888888888888888774

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.47  E-value=5.3e-06  Score=81.97  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=97.0

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh----hcchH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY----LGSRQ  329 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~  329 (680)
                      .+|...|++++|.+++...  .+.......+..|.+.++++.|.+.++.|.+..   +..+...+..++..    ...+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHH
Confidence            3455566666666666554  344555556667777777777777777776532   23344444444322    23567


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 037256          330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHG-RKALEFFSQML  407 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~l~~~m~  407 (680)
                      .|..+|+++.+. +.+++.+.|.+..+....|++++|++++.+.....| |..+...+|......|+. +.+.+++.++.
T Consensus       185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            777777775443 456777788888888888888888888888755544 455666677777777777 66778888888


Q ss_pred             HcCCCCCHH
Q 037256          408 EEGVKPDHI  416 (680)
Q Consensus       408 ~~g~~p~~~  416 (680)
                      .  ..|+..
T Consensus       264 ~--~~p~h~  270 (290)
T PF04733_consen  264 Q--SNPNHP  270 (290)
T ss_dssp             H--HTTTSH
T ss_pred             H--hCCCCh
Confidence            7  466654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.47  E-value=0.00079  Score=64.79  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH---HHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH-HHHHHHh
Q 037256          147 VQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMI---TAYEQAEKPEEALILFQKTQQEGLLSDSVTIV-SVASAVG  222 (680)
Q Consensus       147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~  222 (680)
                      -.--|...+...|++.+|+.-|....+-|+..|.++.   ..|...|+...|+.-+.+.++.  +||-..-. .-...+.
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence            3344556666778888888888888877777777664   4577778888888777777663  56533211 1112234


Q ss_pred             ccCChHHHHHHHHHHHHc
Q 037256          223 QLGDVLKAQAVHGYAICN  240 (680)
Q Consensus       223 ~~~~~~~a~~~~~~~~~~  240 (680)
                      +.|.++.|..-|..+++.
T Consensus       118 K~Gele~A~~DF~~vl~~  135 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQH  135 (504)
T ss_pred             hcccHHHHHHHHHHHHhc
Confidence            555555555555555544

>PF12854 PPR_1: PPR repeat

Probab=98.46  E-value=2.7e-07  Score=58.00  Aligned_cols=32  Identities=31%  Similarity=0.624  Sum_probs=18.5

Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45555555555555555555555555555555

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.46  E-value=0.0027  Score=65.02  Aligned_cols=398  Identities=11%  Similarity=0.112  Sum_probs=225.3

Q ss_pred             CC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256           72 KS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA  150 (680)
Q Consensus        72 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (680)
                      .| |+.+|+.||+-+... ..+++.+.++++... .+-....|..-+..-...++++..+.+|.+.+..-+  +...|..
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l   91 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL   91 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence            56 899999999987666 899999999999864 223556788888888899999999999999887643  4555665


Q ss_pred             HHHHHHh-cCChHHHH----HHHhc------CCCCChhHHHHHHHH---------HHhCCCccHHHHHHHHHHHcCCCC-
Q 037256          151 LVDMYAK-CGQTDDGC----KVFDE------MSVRDLVSWTVMITA---------YEQAEKPEEALILFQKTQQEGLLS-  209 (680)
Q Consensus       151 Li~~~~~-~g~~~~A~----~~f~~------~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-  209 (680)
                      .++--.+ .|+...+.    +.|+-      |.-..-..|+..+.-         |.++.+.+...++|+++....+.- 
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            5542222 23333321    22221      222233446655533         334445666777777776532211 


Q ss_pred             -----CHhHHHHHHHHH-------hccCChHHHHHHHHHHHH--ccCCCChhH---------------HHHHHHHHHhcC
Q 037256          210 -----DSVTIVSVASAV-------GQLGDVLKAQAVHGYAIC--NAFLEDLCI---------------QNSIVAMYARCG  260 (680)
Q Consensus       210 -----~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~Li~~y~~~g  260 (680)
                           |-.+|..-++..       -+...+..|.+++.++..  .|+..+..+               |-.+|..=-..+
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 111121111111       122345556666655543  232221111               222221100000


Q ss_pred             ------CHH--HHHHHHHhcCC---CChhHHHH-------HHHHHHHcCC-------hhHHHHHHHHHHhCCCCCCHhhH
Q 037256          261 ------NVE--KARLVFDMMEK---RDLISWNS-------MLTGYIQNGQ-------ASEALLLFDEMQNSDCKPNPVTA  315 (680)
Q Consensus       261 ------~~~--~A~~~f~~m~~---~~~~~~~~-------li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~  315 (680)
                            ..-  ...-++++...   -.+..|--       .-..+...|+       .+++..++++....-..-+..+|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000  00000000000   00111110       0112223333       34555566555443223333333


Q ss_pred             HHHHHHHhhh---cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CC-CHhHHHHHHHH
Q 037256          316 LILVSACTYL---GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ER-NVSSWNVLIAG  389 (680)
Q Consensus       316 ~~ll~a~~~~---g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~~li~~  389 (680)
                      ..+..---..   ...+....++..+...-...-..+|..+++.-.+..-+..|+.+|.+..+.  .+ ++...++++.-
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy  411 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY  411 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence            3333221111   124455555655555433334567778888888888899999999988544  23 67788889888


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC--hHHHHHHHHHHHhcCCH
Q 037256          390 YGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPE--VKHYACMVDMLGRAGCL  466 (680)
Q Consensus       390 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~  466 (680)
                      || .++.+-|.++|+--...  -+|.. -....+.-+++.++-..+..+|++....++.|+  ...|..+++-=..-|++
T Consensus       412 ~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  412 YC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             Hh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence            87 46778899999865553  33443 445566777888888999999999988865555  57899999988889999


Q ss_pred             HHHHHHHHhC
Q 037256          467 YEAFDMIKQM  476 (680)
Q Consensus       467 ~~A~~~~~~m  476 (680)
                      ..+.++-+++
T Consensus       489 ~si~~lekR~  498 (656)
T KOG1914|consen  489 NSILKLEKRR  498 (656)
T ss_pred             HHHHHHHHHH
Confidence            9888887765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=0.00026  Score=66.65  Aligned_cols=180  Identities=8%  Similarity=-0.024  Sum_probs=125.2

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHhccCChHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV-LKACASNSLILEGKVVH  133 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~  133 (680)
                      .++++|++++..-.++.| +....+.+...|-...++..|-+.|+++-..  .|...-|..- ...+.+.+.+..|..+.
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~  101 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA  101 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            678888888888888877 6666777777888888899999999988764  3433333221 23445666777777777


Q ss_pred             HHHHHhCCCCchhHHHHHHH----HHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 037256          134 GDIIRTGFLSDSYVQAALVD----MYAKCGQTDDGCKVFDEMS-VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL  208 (680)
Q Consensus       134 ~~~~~~g~~~~~~~~~~Li~----~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  208 (680)
                      ..|...     ....+..+.    ..-..+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|....+-+--
T Consensus       102 ~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen  102 FLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence            665432     222222221    1234688888899999888 466666666666777889999999999888776544


Q ss_pred             CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256          209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL  243 (680)
Q Consensus       209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  243 (680)
                      .....|+..+.- -+.++.+.|.+...+++++|+.
T Consensus       177 qpllAYniALaH-y~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  177 QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence            455667666544 4668888999988888888754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=5e-06  Score=85.10  Aligned_cols=214  Identities=13%  Similarity=0.097  Sum_probs=164.8

Q ss_pred             hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHH
Q 037256          323 TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       323 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      .+.|++..|.-.|+..++.. +-+...|.-|...-...++-..|+..+++..+.+| |....-+|...|...|.-.+|++
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            46677788888888777766 55778888888888888888888888888866665 46778888888999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256          402 FFSQMLEEGVKPDHITFTSI--------LSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       402 l~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~  472 (680)
                      .++.-+...  |-..-...-        -........+....++|-.+... +..+|..++.+|.-.|--.|.+++|.+.
T Consensus       375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            998887632  211100000        01222233345566667666665 7678888999999999999999999999


Q ss_pred             HHhC-CCCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          473 IKQM-PLPPN-DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       473 ~~~m-~~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      |+.. ..+|+ ...||-|-......     |..+..+++++.|.-..+.+.|+-.|...|.++||.+.+-....
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9987 77785 56899887777654     88899999999999999999999999999999999999887654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.0061  Score=66.83  Aligned_cols=406  Identities=13%  Similarity=0.085  Sum_probs=221.8

Q ss_pred             HHHhccccccHHHHHHHhh---hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC----CCCcchHHHHHHHHHh
Q 037256           15 LLKSCNFLASLRQIHSSLT---TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND----KSYSFLWNTMIRAYAN   87 (680)
Q Consensus        15 ~l~~~~~~~~~~~~h~~~~---~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~----~p~~~~~~~li~~~~~   87 (680)
                      ++..|-..+-++..-+.++   |+-+|+..++-            .-..-+++.++..+.    ..|...-+.-+.++..
T Consensus       929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e------------~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt  996 (1666)
T KOG0985|consen  929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNE------------ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT  996 (1666)
T ss_pred             HHHhcCchhHHHHHHHHHHhccChHHHHHHHhc------------cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence            5566655444455555555   77777777631            111122333333211    1144445566788888


Q ss_pred             CCCchHHHHHHHHHHhCCCC--CCcccHHHHHHHHhccCChHHHHHHHHHHHHhC-----------------------CC
Q 037256           88 NGHCVETLELYSTMRRSGIS--SNSYTFPFVLKACASNSLILEGKVVHGDIIRTG-----------------------FL  142 (680)
Q Consensus        88 ~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------------------~~  142 (680)
                      .+-+.+-++++++..-..-.  -+...-+.|+-...+. +.....+..+.+-..+                       +.
T Consensus       997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen  997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred             cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc
Confidence            89999999999887643211  1111122222222222 1222222222221111                       11


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 037256          143 SDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG  222 (680)
Q Consensus       143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  222 (680)
                      .+....+.||.   .-+.++.|.+.-++..+  ...|+.+..+-.+.|...+|++-|-+.      -|...|..++..+.
T Consensus      1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred             ccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence            22222222222   22444444444444433  457999999999999999999988653      46778999999999


Q ss_pred             ccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 037256          223 QLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDE  302 (680)
Q Consensus       223 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  302 (680)
                      +.|.+++-..++..+.+..-+|.+  -+.||-+|++.+++.+-+++..   .||..-...+..-|...|.++.|.-+|..
T Consensus      1145 ~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred             hcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence            999999999999888887766654  4689999999999988777653   35555555566666666777666655543


Q ss_pred             HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCH
Q 037256          303 MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNV  380 (680)
Q Consensus       303 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~  380 (680)
                      .         ..|..+...+...|.++.|..--+.      ..+..+|..+-.++...+.+.-|.     |...  --..
T Consensus      1220 v---------SN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivha 1279 (1666)
T KOG0985|consen 1220 V---------SNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHA 1279 (1666)
T ss_pred             h---------hhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEeh
Confidence            2         2345555555556665555443322      124455555555555444443331     2110  0112


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCc------ChHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL-SVKP------EVKH  452 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~  452 (680)
                      .-..-++.-|...|-+++-+.+++.-..  +.--. ..|+-|.-.|++ =++++..+.++..-.+ +++.      ....
T Consensus      1280 deLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahl 1356 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHL 1356 (1666)
T ss_pred             HhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            2344566666666777766666654432  22222 234444444443 2334444333332222 2211      2346


Q ss_pred             HHHHHHHHHhcCCHHHHHHH
Q 037256          453 YACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       453 ~~~li~~~~~~g~~~~A~~~  472 (680)
                      |+-++-.|.+-..++.|.-.
T Consensus      1357 W~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1357 WSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred             HHHHHHHHHhhhhhhHHHHH
Confidence            77777777777777765433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=1.3e-05  Score=84.20  Aligned_cols=218  Identities=12%  Similarity=0.160  Sum_probs=179.2

Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256          242 FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA  321 (680)
Q Consensus       242 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (680)
                      ++|-...-..+...+..+|-...|..+|++.     ..|.-.|.+|...|+..+|..+..+-.+  -+||..-|..+.+.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            4455556677889999999999999999975     5688899999999999999999988887  38999999999999


Q ss_pred             HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256          322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  400 (680)
                      ..+..-+++|.++.+.....       .-..+.....+.++++++.+.|+.-....| -..+|-.+..+..+.+++..|.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            88888899999888765332       111122222346899999999997644444 4678998998999999999999


Q ss_pred             HHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          401 EFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       401 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +.|..-..  ..||.. .|+.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus       540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            99999988  789876 89999999999999999999999999876 445556766777788999999999999887

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.39  E-value=1.4e-05  Score=84.02  Aligned_cols=229  Identities=14%  Similarity=0.105  Sum_probs=138.1

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcC
Q 037256          181 VMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG  260 (680)
Q Consensus       181 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g  260 (680)
                      .+...+...|-..+|+.+|++...         +..++..|...|+..+|..+..+..+  -+||...|..|.+......
T Consensus       403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence            344455555555666666555432         33344444555555555555444444  2566666666666665556


Q ss_pred             CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256          261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN  340 (680)
Q Consensus       261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~  340 (680)
                      -+++|.++++....+--.+|+.+   ..++++++++.+.|+.-.+..                                 
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n---------------------------------  515 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN---------------------------------  515 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC---------------------------------
Confidence            67777777766544322222222   233677777777776655432                                 


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256          341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT  419 (680)
Q Consensus       341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  419 (680)
                         +....+|-.+..++.++++++.|.+.|.......|| ..+||.+-.+|.+.|+-.+|...+.+..+...+ +...|-
T Consensus       516 ---plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWE  591 (777)
T KOG1128|consen  516 ---PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWE  591 (777)
T ss_pred             ---ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeee
Confidence               223445555666677788888888888877666665 567888888888888888888888888876532 233344


Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHH
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDML  460 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~  460 (680)
                      ..+-.....|.+++|.+.+.++... ....|..+-..++...
T Consensus       592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~  633 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV  633 (777)
T ss_pred             chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence            4444567788888888888887765 2222555555454433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.34  E-value=1.9e-05  Score=76.53  Aligned_cols=163  Identities=11%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI----TF  418 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~  418 (680)
                      ...+..+...|.+.|++++|...|+++....|+    ..+|..+..+|...|++++|+..++++.+  ..|+..    ++
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~  110 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY  110 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence            334444555555566666666666555333332    12445555555666666666666666655  233221    22


Q ss_pred             HHHHHHHHcc--------CCHHHHHHHHHHhhhcCCCcCh-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 037256          419 TSILSACSHA--------GLIDEGRKCFADMTKLSVKPEV-KHY-----------------ACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       419 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~-----------------~~li~~~~~~g~~~~A~~~  472 (680)
                      ..+..++...        |+.++|.+.|+.+.+..  |+. ..+                 ..+.+.|.+.|++++|...
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            2233333322        45555666666555431  211 111                 1334455566666666655


Q ss_pred             HHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          473 IKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPE---HTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       473 ~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      +++.                           ++..|+   .+..+..++.+|.+.|++++|.++++.+..+
T Consensus       189 ~~~a---------------------------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       189 FETV---------------------------VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHH---------------------------HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5543                           334443   3468889999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.0093  Score=65.51  Aligned_cols=42  Identities=10%  Similarity=0.101  Sum_probs=23.2

Q ss_pred             HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q 037256           82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS  124 (680)
Q Consensus        82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  124 (680)
                      +.-.-+.++.+--+..++.....|.+ |..|+++|.+.|...+
T Consensus       845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN  886 (1666)
T KOG0985|consen  845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN  886 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence            33334444555555555666666654 6666666666665443

>PLN02789 farnesyltranstransferase

Probab=98.27  E-value=0.00024  Score=71.23  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=100.7

Q ss_pred             HHHHHcC-CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC
Q 037256          355 DMYAKCG-DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHG--RKALEFFSQMLEEGVKPD-HITFTSILSACSHAG  429 (680)
Q Consensus       355 ~~y~k~g-~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g  429 (680)
                      .++.+.| .+++++..++++... ..+..+|+.....+.+.|+.  ++++.+++++.+  ..|. ..+|.....++.+.|
T Consensus        79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~  156 (320)
T PLN02789         79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLG  156 (320)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhh
Confidence            3333444 355666666555333 23444555544444444442  456666666665  3443 346666666666666


Q ss_pred             CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH-----
Q 037256          430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA---GCL----YEAFDMIKQM-PLPP-NDSVWGALLLACRIH-----  495 (680)
Q Consensus       430 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~-----  495 (680)
                      +++++++.++++++.+ .-+...|+.....+.+.   |..    ++++++..++ ...| |...|+-+.+.+..+     
T Consensus       157 ~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~  235 (320)
T PLN02789        157 GWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV  235 (320)
T ss_pred             hHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence            6777777777666654 23334444444333332   222    3455555333 4444 456777666666552     


Q ss_pred             ----HHHHHHHHHccCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 037256          496 ----GEIAANYLFQLEPEHTGYFVLMSNIYAASN------------------KWREVGKLREDMK  538 (680)
Q Consensus       496 ----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~  538 (680)
                          +......++..+|+++.+...|+++|+...                  ..++|.++.+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence                334455666778888888888999987632                  2356777777773

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.26  E-value=0.00032  Score=78.97  Aligned_cols=222  Identities=16%  Similarity=0.157  Sum_probs=165.4

Q ss_pred             CHhHHHHHHHHHhccCChHHHHHHHHHHHHcc-C---CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHH
Q 037256          210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNA-F---LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR-D-LISWNSM  283 (680)
Q Consensus       210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~l  283 (680)
                      +...|..-|......++.+.|+++.+++++.= +   ..-..+|.+++++-..-|.-+...++|++..+- | ...|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34456666777777888888888888777642 1   123457888888888888888888999988763 3 4567888


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCC
Q 037256          284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~  362 (680)
                      ...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+...-+.|..++.++.+.=. .-......-.+.+-.++|+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            889999999999999999998752 34556777788888888888888888888776421 1245566666777889999


Q ss_pred             HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHH
Q 037256          363 LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLID  432 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~  432 (680)
                      .+.++.+|+......| -...|+..|..=.++|+.+.+..+|++....++.|-.  ..|.-.|..=.+.|+-+
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            9999999998855443 5778999999999999999999999999998887765  35555555444445433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.22  E-value=0.0001  Score=68.76  Aligned_cols=148  Identities=10%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLID  432 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~  432 (680)
                      +-.|.+.|+++.+....+.+.....          .|...++.++++..+++..+.  .| |...|..+...|...|+++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPLH----------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCccc----------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHH
Confidence            4567777777776555544311110          111245566777777776663  34 4456777777778888888


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHH-HhcCC--HHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCC
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDML-GRAGC--LYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPE  509 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~  509 (680)
                      +|...|++..+.. +.+...+..+..++ .+.|+  .++|.++++                           ++++++|+
T Consensus        91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~---------------------------~al~~dP~  142 (198)
T PRK10370         91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMID---------------------------KALALDAN  142 (198)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH---------------------------HHHHhCCC
Confidence            8888888777653 34566666666653 55565  356655554                           45678899


Q ss_pred             CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          510 HTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ++.++..++..+...|++++|...++++.+..
T Consensus       143 ~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        143 EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999998753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.19  E-value=0.00011  Score=71.34  Aligned_cols=184  Identities=12%  Similarity=-0.042  Sum_probs=115.9

Q ss_pred             CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch--H
Q 037256          274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP---VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA--T  348 (680)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~--~  348 (680)
                      ......+..+...+.+.|++++|...|+++.... +.+.   .++..+..++...|+++.|...++.+.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456778888888999999999999999987653 2222   35566667777888888888888887765422111  1


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256          349 LRNAVMDMYAKC--------GDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT  419 (680)
Q Consensus       349 ~~~~li~~y~k~--------g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  419 (680)
                      .+..+...|.+.        |+.++|.+.|+++....|+. ..+..+.....    ...       ...       ....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~-------~~~-------~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN-------RLA-------GKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH-------HHH-------HHHH
Confidence            344445555544        56677777777664444432 22222111100    000       000       0012


Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+...+.+.|++++|...++...+.  +-+.....+..+...+.+.|++++|...++.+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445677889999999998888876  22334567888888899999999998888776

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.18  E-value=5.5e-05  Score=66.60  Aligned_cols=110  Identities=9%  Similarity=-0.017  Sum_probs=77.9

Q ss_pred             HHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCC
Q 037256          368 NMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSV  446 (680)
Q Consensus       368 ~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~  446 (680)
                      .+|++..+..|+  .+..+...+.+.|++++|...|++...  ..|+. ..+..+..++...|++++|...|+...+.. 
T Consensus        14 ~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-   88 (144)
T PRK15359         14 DILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-   88 (144)
T ss_pred             HHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            445554333443  355566677788888888888888877  55544 477777778888888888888888888754 


Q ss_pred             CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 037256          447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND  482 (680)
Q Consensus       447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  482 (680)
                      +.+...+..+..++.+.|++++|...+++. ...|+.
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456777778888888888888888887764 344443

>PLN02789 farnesyltranstransferase

Probab=98.16  E-value=0.00043  Score=69.46  Aligned_cols=199  Identities=7%  Similarity=-0.022  Sum_probs=112.7

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC--hHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNG-HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKV  131 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~  131 (680)
                      ++.++|+.+.+.+....| +..+|+.--..+...| .+++++..++++.+...+ +..+|+..-..+.+.+.  .+++..
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHH
Confidence            778888888888877777 4556776666666666 567888888887766433 33455544434444443  245566


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhC---CCc----cHHHHHHHH
Q 037256          132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQA---EKP----EEALILFQK  201 (680)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~---g~~----~~A~~~~~~  201 (680)
                      +.+.+++.. +.+..+|+.....+.+.|++++|++.++++.+   +|..+|+.....+.+.   |..    +++++...+
T Consensus       130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~  208 (320)
T PLN02789        130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID  208 (320)
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence            666666654 44566777777777777777777777777653   3555666655544443   222    244555545


Q ss_pred             HHHcCCCCCHhHHHHHHHHHhcc----CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 037256          202 TQQEGLLSDSVTIVSVASAVGQL----GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR  258 (680)
Q Consensus       202 m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~  258 (680)
                      ++... +-|...|+.+...+...    +...++......+.+.+ +.+......|++.|+.
T Consensus       209 aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        209 AILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            54432 23444454444444431    22334545554444422 2334445555555553

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.14  E-value=0.00038  Score=78.43  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=144.7

Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT  417 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  417 (680)
                      +.....|-..|......+++++|++++++..+.      +.-.-.|.++++.-...|.-+...++|++..+.  .-....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            445667777777778888888888888877432      112446888887777778778888888888873  322346


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HhH----HHHHH
Q 037256          418 FTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN--DSV----WGALL  489 (680)
Q Consensus       418 ~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~----~~~ll  489 (680)
                      |..|+..|.+.+.+++|.++++.|.+. +  -....|...++.+.+...-+.|..++.+. ..-|.  .+-    +..|-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            778888888888888888888888886 4  66778888888888888888888888765 33333  111    11111


Q ss_pred             HHHHHH--HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 037256          490 LACRIH--GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK  543 (680)
Q Consensus       490 ~a~~~~--~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  543 (680)
                      -.|...  |+..++-++.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            111111  666888888889999999999999999999999999999999987764

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.14  E-value=4e-06  Score=53.47  Aligned_cols=35  Identities=43%  Similarity=0.746  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH  415 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  415 (680)
                      .+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999999988873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.13  E-value=0.00078  Score=62.89  Aligned_cols=157  Identities=16%  Similarity=0.121  Sum_probs=123.6

Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcC
Q 037256          316 LILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHG  394 (680)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g  394 (680)
                      ...-.++...|+-+....+...... ..+.|..+.+.++....+.|++..|...|++.... .+|...||.+..+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence            4444455555555555555444322 22456677777899999999999999999998665 567899999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256          395 HGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI  473 (680)
Q Consensus       395 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  473 (680)
                      ++++|..-|.+..+  +.|+. ..++.+.-.+.-.|+.+.|..++......+ .-|..+-..+....+..|++++|.++.
T Consensus       149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            99999999999998  67765 467788888888999999999999988764 346667777888899999999999988


Q ss_pred             HhC
Q 037256          474 KQM  476 (680)
Q Consensus       474 ~~m  476 (680)
                      ..-
T Consensus       226 ~~e  228 (257)
T COG5010         226 VQE  228 (257)
T ss_pred             ccc
Confidence            654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.11  E-value=0.026  Score=61.67  Aligned_cols=128  Identities=13%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             CChHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH  133 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  133 (680)
                      +++..|.+...++..+.||. .|...+.++  .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..++
T Consensus        23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence            77778888888888888876 356666665  5789999999988887765544 7888888888899999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCChH----HHHHHHhcCCCCChhHHHHHHHHHHh
Q 037256          134 GDIIRTGFLSDSYVQAALVDMYAKCGQTD----DGCKVFDEMSVRDLVSWTVMITAYEQ  188 (680)
Q Consensus       134 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~  188 (680)
                      ++..+.  .|+......+..+|.+.+++.    .|.+++...+.+--..|+ +++.+.+
T Consensus       101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilq  156 (932)
T KOG2053|consen  101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQ  156 (932)
T ss_pred             HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHH
Confidence            998876  456777777888888887764    477777766655444454 4444444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.10  E-value=0.0003  Score=65.55  Aligned_cols=116  Identities=13%  Similarity=0.147  Sum_probs=54.2

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHcCC--HHHHH
Q 037256          291 GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM-YAKCGD--LDTAE  367 (680)
Q Consensus       291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~-y~k~g~--~~~A~  367 (680)
                      ++.++++..+++..+.. +.|...|..+...+...|+++.|...++...+.. +.+..++..+..+ |...|+  .++|.
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34444444444444432 3344444444444445555555555554444443 2344444444443 234444  25555


Q ss_pred             HHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          368 NMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       368 ~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +++++.....| +...+..+...+.+.|++++|+..|+++.+
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555533333 344445555555555555555555555554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.08  E-value=0.0014  Score=73.34  Aligned_cols=150  Identities=11%  Similarity=0.111  Sum_probs=99.7

Q ss_pred             CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256          311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY  390 (680)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~  390 (680)
                      +...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+.             +..|
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-------------V~~~  179 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-------------IYRF  179 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------------HHHH
Confidence            33456666667777777777777777777766 66778888888888888 888888888777             3346


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPDHITF-TSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYE  468 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~  468 (680)
                      ...+++.++.++|.++..  ..|+.+.+ ..++                +.+... |..--+.++--+...|....++++
T Consensus       180 i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        180 IKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             HhhhcchHHHHHHHHHHh--cCcccchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence            777788889999998888  55665433 2222                222222 334444556666777888888888


Q ss_pred             HHHHHHhC-CCCCC-HhHHHHHHHHHH
Q 037256          469 AFDMIKQM-PLPPN-DSVWGALLLACR  493 (680)
Q Consensus       469 A~~~~~~m-~~~p~-~~~~~~ll~a~~  493 (680)
                      +.++++.+ ...|+ .....-+...++
T Consensus       242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        242 VIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            88888876 44443 334444444444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.05  E-value=7.2e-06  Score=52.25  Aligned_cols=35  Identities=31%  Similarity=0.554  Sum_probs=31.8

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256           76 FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS  110 (680)
Q Consensus        76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  110 (680)
                      ++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.04  E-value=0.0076  Score=58.29  Aligned_cols=318  Identities=12%  Similarity=0.079  Sum_probs=191.2

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCchhHH-HHHH
Q 037256           77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVL---KACASNSLILEGKVVHGDIIRTGFLSDSYVQ-AALV  152 (680)
Q Consensus        77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li  152 (680)
                      -.--+...+.-.|++..|+.-|....+.    |+..|.++.   ..|...|+-..|..=+..+++.  .||-... -.-.
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            3445777888889999999999988764    333444443   4566778878888888887775  4553221 1122


Q ss_pred             HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 037256          153 DMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQA  232 (680)
Q Consensus       153 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  232 (680)
                      ..+.+.|.++.|..-|+.+.+.++. -+....++.+.-       +.+++.         .....+..+...|+...+..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~  176 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIE  176 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHH
Confidence            3456788888888888776543221 001111111111       111111         12233444556677777777


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 037256          233 VHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK  309 (680)
Q Consensus       233 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  309 (680)
                      ....+++.. +-|...+..-..+|...|+...|+.-+....   ..++...--+-..+-..|+.+.++...++-.+  +.
T Consensus       177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld  253 (504)
T KOG0624|consen  177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD  253 (504)
T ss_pred             HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence            777776653 5577777777788888888888876555443   34566666666677778888888888777765  35


Q ss_pred             CCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC--Hh---HHH
Q 037256          310 PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN--VS---SWN  384 (680)
Q Consensus       310 p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~--~~---~~~  384 (680)
                      ||.......   |   ..+.+....+..|.                .....+++.++.+..+...+.+|.  .+   .+.
T Consensus       254 pdHK~Cf~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r  311 (504)
T KOG0624|consen  254 PDHKLCFPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR  311 (504)
T ss_pred             cchhhHHHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence            665432111   1   11111111111111                122345566666666655444444  22   334


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          385 VLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       385 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .+-.+|...|++.+|++.-.+.++  +.||. .++.--..+|.-...++.|+.-|+...+.
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            455667777888888888888887  67774 47777777888888888888888877764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=0.0017  Score=65.98  Aligned_cols=202  Identities=12%  Similarity=0.022  Sum_probs=131.4

Q ss_pred             CHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256          261 NVEKARLVFDMMEK------RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF  334 (680)
Q Consensus       261 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i  334 (680)
                      ++.+++..-+.++.      ++.......+.+.........+..++. +... ..-...-|...+ .....|.++.|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence            45555656666653      244445555554433333233322222 2221 011222233322 23456778888888


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                      +..+++.- +.|+.......+.+.+.++..+|.+.|+++....|+ ...+-.+..+|.+.|++.+|+.++++.... .+-
T Consensus       329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~  406 (484)
T COG4783         329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPE  406 (484)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCC
Confidence            88776653 567777778888889999999999999888777776 566777788888889999999888888775 344


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhHH
Q 037256          414 DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--PLPPNDSVW  485 (680)
Q Consensus       414 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~  485 (680)
                      |...|..|..+|...|+..++.....                  +.|...|++++|..+....  ..+++...|
T Consensus       407 dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~  462 (484)
T COG4783         407 DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQVKLGFPDW  462 (484)
T ss_pred             CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence            66788888889998888877766543                  4566788888888887765  344555555

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00029  Score=65.63  Aligned_cols=146  Identities=10%  Similarity=0.013  Sum_probs=101.5

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |+-+++..+........| |....+..+....++|++.+|+..|++..+.. ++|..+|+.+--+|.+.|+++.|+.-|.
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~  158 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYR  158 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHH
Confidence            666666666665544444 44455667777778888888888888877643 4577778888888888888888888888


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQ  203 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  203 (680)
                      +.++.. .-++...|.|.-.|.-.|+.+.|..++....   ..|...-..+.......|++++|.++-..-.
T Consensus       159 qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         159 QALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            777764 4456666777777777788888887776543   2356666667777777777777777665443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.01  E-value=0.00015  Score=63.87  Aligned_cols=68  Identities=13%  Similarity=0.044  Sum_probs=35.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH  415 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  415 (680)
                      +...+..+..++.+.|++++|...|++.....| +...|..+..++...|+.++|...|++..+  +.|+.
T Consensus        57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~  125 (144)
T PRK15359         57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD  125 (144)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence            344444455555555555555555555533333 344555555555555666666666665555  44444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.98  E-value=0.00027  Score=72.33  Aligned_cols=129  Identities=13%  Similarity=0.163  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC  425 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~  425 (680)
                      -....+|+..+...++++.|.++|+++....|++  +..|+..+...++-.+|++++++..+.  .| +......-...|
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL  244 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3444566777778899999999999996556654  445778888888999999999999974  45 444555556678


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPP  480 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p  480 (680)
                      .+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+|+-|
T Consensus       245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            89999999999999999753 4456799999999999999999999999998654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.97  E-value=1.3e-05  Score=50.74  Aligned_cols=33  Identities=36%  Similarity=0.668  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                      .+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            577888888888888888888888888877776

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.95  E-value=0.0023  Score=71.69  Aligned_cols=150  Identities=14%  Similarity=0.164  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256          212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG  291 (680)
Q Consensus       212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g  291 (680)
                      ..+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|++.+.+.           +..|...+
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k  183 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK  183 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence            345555555556666666666666666555 45566666676777666 777776665543           22356666


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 037256          292 QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-NMKIDATLRNAVMDMYAKCGDLDTAENMF  370 (680)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~f  370 (680)
                      ++.++.+++.++...  .|+.+.+               -.++.+.+... |...-+.++-.+-..|-+.++++++..+|
T Consensus       184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL  246 (906)
T PRK14720        184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL  246 (906)
T ss_pred             cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            777777777777764  3332222               11112222211 22333444555566667777777777777


Q ss_pred             hhcCCCC-CCHhHHHHHHHHHH
Q 037256          371 NDIHPSE-RNVSSWNVLIAGYG  391 (680)
Q Consensus       371 ~~~~~~~-~~~~~~~~li~~~~  391 (680)
                      ..+.+.+ .|.....-++..|.
T Consensus       247 K~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        247 KKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhcCCcchhhHHHHHHHHH
Confidence            7775543 34555566666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.92  E-value=0.0011  Score=73.34  Aligned_cols=128  Identities=9%  Similarity=0.021  Sum_probs=93.9

Q ss_pred             CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256          378 RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACM  456 (680)
Q Consensus       378 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  456 (680)
                      .++..+-.|.....+.|++++|..+++...+  +.||.. ....+...+.+.+++++|....++..... +-+......+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            3577788888888899999999999999998  788876 67777888999999999999999988764 4456677788


Q ss_pred             HHHHHhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCC
Q 037256          457 VDMLGRAGCLYEAFDMIKQMP-LPPN-DSVWGALLLACRIH-----GEIAANYLFQLEP  508 (680)
Q Consensus       457 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p  508 (680)
                      ..++.+.|++++|.++|++.- -.|+ ...|.++-.+....     |..+++++++...
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            888999999999999998872 2222 33444443333332     4444555555443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.91  E-value=1.7e-05  Score=50.09  Aligned_cols=34  Identities=26%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISS  108 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  108 (680)
                      +.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3578899999999999999999999998888877

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.89  E-value=0.0027  Score=70.40  Aligned_cols=142  Identities=9%  Similarity=0.092  Sum_probs=81.8

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVM  354 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li  354 (680)
                      ++..+-.|.....+.|.+++|..+++...+.  .||. .....+..++.+.+.+++|....+...+.. +.+....+.+.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence            4556666666667777777777777776653  4443 344455555666666666666666665554 33445555555


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256          355 DMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI  421 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  421 (680)
                      .++.+.|++++|..+|+++....|+ ..+|..+..++...|+.++|...|++..+. ..|....|+..
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~  228 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR  228 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence            6666666666666666666433333 455555566666666666666666666553 23333444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.86  E-value=0.003  Score=64.23  Aligned_cols=161  Identities=15%  Similarity=0.108  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k  359 (680)
                      +.-..-.+...|.+++|+..++.+... .+-|..-.......+...++..+|.+.++.+.... +....+.-.+..+|.+
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~  386 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence            333344455667777777777777654 13334444455566677777777777777777654 2225666667788888


Q ss_pred             cCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      .|++.+|.+++++.....| |+..|..|..+|...|+..+|..-..++..                  ..|++++|...+
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l  448 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFL  448 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHH
Confidence            8888888888877744433 577788888888888888777776666532                  356777777777


Q ss_pred             HHhhhc--CCCcChHHHHHHHHHH
Q 037256          439 ADMTKL--SVKPEVKHYACMVDML  460 (680)
Q Consensus       439 ~~m~~~--~~~p~~~~~~~li~~~  460 (680)
                      ....+.  ...|+..-+...|+..
T Consensus       449 ~~A~~~~~~~~~~~aR~dari~~~  472 (484)
T COG4783         449 MRASQQVKLGFPDWARADARIDQL  472 (484)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHH
Confidence            666665  2244444444545443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.84  E-value=0.00024  Score=61.98  Aligned_cols=109  Identities=12%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             HHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 037256          402 FFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPP  480 (680)
Q Consensus       402 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p  480 (680)
                      ++++..+  ..|+.. ....+...+...|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|...+++.    
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~----   77 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA----   77 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3444544  455443 44555566777788888888887776653 445667777777777777777777766543    


Q ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          481 NDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       481 ~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                                             +++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus        78 -----------------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        78 -----------------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             -----------------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                   3456778888889999999999999999999888764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.78  E-value=0.00043  Score=70.87  Aligned_cols=121  Identities=12%  Similarity=0.160  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK  157 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~  157 (680)
                      -.+|+..+...++++.|+.+|+++.+..  |+  ....+++.+...++-.+|.+++.+.++.. +.+......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3445555555667777777777776653  33  33445566655666666666666666543 3445555555566667


Q ss_pred             cCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 037256          158 CGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQ  203 (680)
Q Consensus       158 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  203 (680)
                      .++.+.|+++.++...  | +..+|..|..+|.+.|++++|+..++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            7777777777766642  3 44477777777777777777777766654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.76  E-value=0.00078  Score=58.72  Aligned_cols=62  Identities=8%  Similarity=0.025  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ...+..+...|.+.|++++|...|+......| +...|..+...|...|++++|+..|++..+
T Consensus        51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33334444444444444444444444322222 233344444444444444444444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.017  Score=54.22  Aligned_cols=84  Identities=11%  Similarity=0.201  Sum_probs=37.6

Q ss_pred             HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256          257 ARCGNVEKARLVFDMMEKR-DLISWNSMLTGYI----QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG  331 (680)
Q Consensus       257 ~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (680)
                      .|..+.+-|.+.++.|.+- +-.+.+-|..++.    ..+...+|.-+|++|-+. .+|+..+.+....++...+++++|
T Consensus       148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeA  226 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEA  226 (299)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHH
Confidence            3444455555555555442 2222222322222    223355555555555432 345555555555455555555555


Q ss_pred             HHHHHHHHHc
Q 037256          332 RKFHGYIINS  341 (680)
Q Consensus       332 ~~i~~~~~~~  341 (680)
                      ..+++.....
T Consensus       227 e~lL~eaL~k  236 (299)
T KOG3081|consen  227 ESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHhc
Confidence            5555444443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=4.6e-05  Score=46.89  Aligned_cols=31  Identities=42%  Similarity=0.704  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGV  411 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  411 (680)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677888888888888888888888777663

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.70  E-value=0.0011  Score=57.76  Aligned_cols=108  Identities=10%  Similarity=-0.073  Sum_probs=72.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKW  527 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~  527 (680)
                      .+...+...|++++|..+|+-. .+.|....+-.=|++|.+.      |..+..++..++|+++..+..++..|...|+.
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence            3444455566666666666654 3344433322223333322      45556677789999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 037256          528 REVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIK  585 (680)
Q Consensus       528 ~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~  585 (680)
                      +.|++.|+......                       ..+|+..++.++++.+...+.
T Consensus       120 ~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        120 CYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence            99999999887531                       135677777777777766654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.68  E-value=0.001  Score=58.78  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILS  423 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~  423 (680)
                      |..++..+ ..++...+...++.+....|+.    ...-.+...+...|++++|...|+........|+.  .....+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            34444444 3778888888888875554543    23344556788899999999999999986533332  24455677


Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      .+...|++++|+..++......  .....+....+.|.+.|+.++|...|++
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8889999999999997754333  3445677888999999999999998875

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.016  Score=54.32  Aligned_cols=109  Identities=12%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256          355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG----MHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL  430 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~  430 (680)
                      ..+.|..+++-|.+.+++|.+. .+..+.+.|..++.    -.+...+|.-+|++|.++ ..|+..+.+....++...|+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQI-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            3344555666666666666222 12233333333332    234466666667666654 56666666666666667777


Q ss_pred             HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256          431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  466 (680)
                      +++|..+++....+. ..++.+...+|..-...|..
T Consensus       223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence            777777766666552 23344444444444444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.043  Score=51.21  Aligned_cols=183  Identities=13%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             cCChhHHHHHHHHHHh---CC-CCCCHhh-HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHH
Q 037256          290 NGQASEALLLFDEMQN---SD-CKPNPVT-ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLD  364 (680)
Q Consensus       290 ~g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~  364 (680)
                      ..+.++.++++.++..   .| ..++..+ |--++-+....|+.+.|...++.+.+.- +.+..+...-.-.+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            3456677777766653   23 4455543 3344445555666666666666655443 333333333333344556677


Q ss_pred             HHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          365 TAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       365 ~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      +|.++++.+.+..| |.+++--=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            77777776654444 3445544444445556666666666666654 455666666666666666777777666666664


Q ss_pred             cCCCcChHHHHHHHHHHHhcC---CHHHHHHHHHh
Q 037256          444 LSVKPEVKHYACMVDMLGRAG---CLYEAFDMIKQ  475 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~  475 (680)
                      .. +.+...+..+.+.+.-.|   +++-|.+++.+
T Consensus       183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            32 222333344444443332   23334444444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.61  E-value=6.6e-05  Score=46.17  Aligned_cols=31  Identities=35%  Similarity=0.712  Sum_probs=25.2

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037256           76 FLWNTMIRAYANNGHCVETLELYSTMRRSGI  106 (680)
Q Consensus        76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  106 (680)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888887763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.53  E-value=0.0055  Score=54.07  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHcCCHH
Q 037256          290 NGQASEALLLFDEMQNSDCKPNPV---TALILVSACTYLGSRQLGRKFHGYIINSNMKID--ATLRNAVMDMYAKCGDLD  364 (680)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~  364 (680)
                      .++...+...++.+.... +.+..   ....+...+...|++++|...++.+......++  ......|...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            555555555555555432 11111   111122333344444444444444444331111  112223344445555555


Q ss_pred             HHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256          365 TAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQ  405 (680)
Q Consensus       365 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  405 (680)
                      +|...++...........+......|...|+.++|...|++
T Consensus       103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555544422222333444444455555555555555543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.44  E-value=0.16  Score=50.96  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (680)
                      .+.-|.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-.++-..      +-.++.|-.++.+|...|..
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK  253 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence            344566677889999999999999889999999999999999999987765432      22347888899999999998


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhh
Q 037256          329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFND  372 (680)
Q Consensus       329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~  372 (680)
                      .+|..+...+     +     +..-+.+|.++|++.+|.+.--+
T Consensus       254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888776652     1     25567889999999988776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.35  E-value=0.0039  Score=52.70  Aligned_cols=89  Identities=15%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSA  424 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a  424 (680)
                      +...+.+.|++++|.+.|+.+....|+    ...+..+...+.+.|++++|...|+++...  .|+    ...+..+..+
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHHHHH
Confidence            334444444555554444444222222    123333444444445555555555544442  122    1233333344


Q ss_pred             HHccCCHHHHHHHHHHhhh
Q 037256          425 CSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       425 ~~~~g~~~~a~~~~~~m~~  443 (680)
                      +.+.|+.++|...++++.+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHhCChHHHHHHHHHHHH
Confidence            4444455555555444444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.34  E-value=0.0072  Score=59.87  Aligned_cols=141  Identities=12%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA-CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                      .+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356666666666666777777777776432 2222223222222 22245566677777777665 45677778888888


Q ss_pred             HHHcCCHHHHHHHHhhcCCCCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037256          357 YAKCGDLDTAENMFNDIHPSERNVS----SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSIL  422 (680)
Q Consensus       357 y~k~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  422 (680)
                      +.+.++.+.|..+|++....-+...    .|...+.-=.+.|+.+.+.++.+++.+  .-|+...+..++
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~  147 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS  147 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence            8888888888888888755544333    677777777777777777777777777  345533333333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.32  E-value=0.0028  Score=50.44  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=43.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR  462 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  462 (680)
                      ..+...+...|++++|...+++..+.  .|+. ..+..+...+...+++++|.+.++...+.. +.+...+..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            33444445555555555555555442  2222 334444445555555555555555554432 2222344455555555


Q ss_pred             cCCHHHHHHHHHh
Q 037256          463 AGCLYEAFDMIKQ  475 (680)
Q Consensus       463 ~g~~~~A~~~~~~  475 (680)
                      .|+.++|...+++
T Consensus        81 ~~~~~~a~~~~~~   93 (100)
T cd00189          81 LGKYEEALEAYEK   93 (100)
T ss_pred             HHhHHHHHHHHHH
Confidence            5555555555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.27  E-value=0.25  Score=49.56  Aligned_cols=111  Identities=17%  Similarity=0.181  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA  428 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  428 (680)
                      +.+..+.-+...|+...|.++-.+.  .-|+-.-|-..+.+|+..+++++-.++...      +-.++-|-.++.+|...
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence            3344456667789999999999888  788999999999999999999877765432      22347788899999999


Q ss_pred             CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256          429 GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP  477 (680)
Q Consensus       429 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  477 (680)
                      |...+|..+...+.          +..-+.+|.++|++.+|.+.--+.+
T Consensus       251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            99999999887732          2456788999999999988766653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.26  E-value=0.0006  Score=53.70  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=42.7

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256          393 HGHGRKALEFFSQMLEEGVK-PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       393 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      .|++++|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46666777777777664221 1233344456666666777777666666 22211 122223344566666666666666


Q ss_pred             HHHh
Q 037256          472 MIKQ  475 (680)
Q Consensus       472 ~~~~  475 (680)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0081  Score=55.98  Aligned_cols=181  Identities=11%  Similarity=0.007  Sum_probs=124.3

Q ss_pred             HHHHHHhh--hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchH--------HHHHHHHHhCCCchHHH
Q 037256           26 RQIHSSLT--TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLW--------NTMIRAYANNGHCVETL   95 (680)
Q Consensus        26 ~~~h~~~~--~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~--------~~li~~~~~~g~~~~A~   95 (680)
                      |-+|+.++  .++-+++|+..|.- .      .-+++-...|+.-......+..|        +.++..+.-.|.+.-.+
T Consensus       125 R~lhAe~~~~lgnpqesLdRl~~L-~------~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~  197 (366)
T KOG2796|consen  125 RILHAELQQYLGNPQESLDRLHKL-K------TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSV  197 (366)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHH-H------HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhH
Confidence            88898888  77788999988887 5      55666666665443322133333        56667777778888888


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH-----HHHHHHHHhcCChHHHHHHHhc
Q 037256           96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQ-----AALVDMYAKCGQTDDGCKVFDE  170 (680)
Q Consensus        96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----~~Li~~~~~~g~~~~A~~~f~~  170 (680)
                      .++.+.++...+.++.....|.+...+.||.+.|...|+...+..-..|....     ...-..|.-.+++.+|...|++
T Consensus       198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~  277 (366)
T KOG2796|consen  198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE  277 (366)
T ss_pred             HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence            89998888765666777777777778889999999999977665333333333     3334456667888888888988


Q ss_pred             CCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH
Q 037256          171 MSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIV  215 (680)
Q Consensus       171 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  215 (680)
                      ++..   |++.-|.-.-+..-.|+...|++..+.|.+.  .|...+-.
T Consensus       278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            8754   4555555444455568888899998888875  34444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.24  E-value=0.0051  Score=48.90  Aligned_cols=27  Identities=19%  Similarity=0.197  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQNS  306 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (680)
                      |..+...+...|++++|...|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~   29 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALEL   29 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            334445555566666666666655543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.22  E-value=0.52  Score=52.03  Aligned_cols=185  Identities=11%  Similarity=0.068  Sum_probs=127.6

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |+.++|..+++......| |..+...+-..|...|+.++|..+|++....  .|+..-...+..++.+.+++.+-.++--
T Consensus        57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~  134 (932)
T KOG2053|consen   57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL  134 (932)
T ss_pred             cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988876655 7778899999999999999999999999864  5778888888999999988877666655


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCCCCC--hhH---HHHHHHHHHhCCCccHHHHHH
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQ----------TDDGCKVFDEMSVRD--LVS---WTVMITAYEQAEKPEEALILF  199 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~  199 (680)
                      ++-+. ++..++.+=++++.+...-.          +.-|.+.++.+.+.+  ..+   .-.-...+-..|++++|++++
T Consensus       135 ~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l  213 (932)
T KOG2053|consen  135 QLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL  213 (932)
T ss_pred             HHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence            55553 35556655556666554311          234556666655433  111   111122344568899999998


Q ss_pred             -HHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256          200 -QKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL  243 (680)
Q Consensus       200 -~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  243 (680)
                       ....+.-...+...-+--+..+...+++.+..++-.+++..|.+
T Consensus       214 ~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  214 AITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence             44444433444444455666777778888888888888877643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.20  E-value=0.28  Score=48.75  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcC--hHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVK-----PDHI-TFTSILSACSHAGLIDEGRKCFADMTKL--SVKPE--VKHY  453 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~  453 (680)
                      ..+...+.+.|++++|+++|++....-..     ++.. .|...+-.+...|++..|.+.|++....  ++..+  ....
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~  238 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL  238 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence            33456677778888888888777664322     2222 2333344566678888888888887654  44444  3345


Q ss_pred             HHHHHHHHh--cCCHHHHHHHHHhC
Q 037256          454 ACMVDMLGR--AGCLYEAFDMIKQM  476 (680)
Q Consensus       454 ~~li~~~~~--~g~~~~A~~~~~~m  476 (680)
                      ..|++++-.  ...+++|+.-|+.+
T Consensus       239 ~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  239 EDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHccc
Confidence            566666643  45677777777776

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.19  E-value=0.001  Score=52.31  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             cCCHHHHHHHHhhcCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSER---NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~  435 (680)
                      .|+++.|..+|+++....|   +...|-.+..+|.+.|++++|+.++++ ..  ..|.. .....+..+|...|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            5889999999999855555   345566689999999999999999998 32  34444 34445577899999999999


Q ss_pred             HHHHH
Q 037256          436 KCFAD  440 (680)
Q Consensus       436 ~~~~~  440 (680)
                      +++++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.14  E-value=0.01  Score=50.05  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYAC  455 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~  455 (680)
                      ++......+.+.|++++|.+.|.++.+.  .|+.    ..+..+..++...|++++|...|+.+...  +.+.....+..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4566777888999999999999999874  3442    35666788899999999999999998875  22223566778


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 037256          456 MVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       456 li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +..++.+.|+.++|.+.++++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHH
Confidence            888999999999999999876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.13  E-value=0.00035  Score=43.78  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             HHHHHccCCCCCchHHHHHHHHHhcCChhHHHH
Q 037256          500 ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGK  532 (680)
Q Consensus       500 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~  532 (680)
                      ++++++++|+|+.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            468899999999999999999999999999863

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.10  E-value=0.006  Score=58.27  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=70.2

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHH
Q 037256          390 YGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYE  468 (680)
Q Consensus       390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  468 (680)
                      +.+.+++.+|+..|.+.++  +.|+. +-|..=..+|++.|.++.|++-.+..+..+ +-....|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            4567888888888888888  66644 556666778888888888888777776543 2335678888888888888888


Q ss_pred             HHHHHHhC-CCCCCHhHHHHHH
Q 037256          469 AFDMIKQM-PLPPNDSVWGALL  489 (680)
Q Consensus       469 A~~~~~~m-~~~p~~~~~~~ll  489 (680)
                      |++.|++. .+.|+..+|..=|
T Consensus       168 A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhccCCCcHHHHHHH
Confidence            88887765 5666666554444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.09  E-value=0.0091  Score=61.42  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256          389 GYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY  467 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  467 (680)
                      .+...|++++|+++|++.++  ..|+. ..|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            34456777777777777776  34443 356666666777777777777777776653 334556666777777777777


Q ss_pred             HHHHHHHhC-CCCCCHhHHHHHHHHH
Q 037256          468 EAFDMIKQM-PLPPNDSVWGALLLAC  492 (680)
Q Consensus       468 ~A~~~~~~m-~~~p~~~~~~~ll~a~  492 (680)
                      +|+..|++. .+.|+.......+..|
T Consensus        88 eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            777777665 4555555544444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.08  E-value=0.024  Score=51.64  Aligned_cols=130  Identities=12%  Similarity=0.074  Sum_probs=79.3

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMV  457 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  457 (680)
                      ...+..+...|...|++++|...|++..+....|+  ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            44566666777777888888888887776433322  2456666777778888888888888777642 22345555666


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 037256          458 DMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNK  526 (680)
Q Consensus       458 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~  526 (680)
                      ..|...|+...+..-++..             ..+...+...++++++++|++   |..+...+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A-------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA-------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH-------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            6777766655544322221             011223566677777888876   5555555555554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.07  E-value=0.0055  Score=49.48  Aligned_cols=81  Identities=19%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 037256           77 LWNTMIRAYANNGHCVETLELYSTMRRSGI-SSNSYTFPFVLKACASNS--------LILEGKVVHGDIIRTGFLSDSYV  147 (680)
Q Consensus        77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~  147 (680)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-+...+++.|+..++.|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            344566777778999999999999999999 899999999999987653        23456788999999999999999


Q ss_pred             HHHHHHHHHh
Q 037256          148 QAALVDMYAK  157 (680)
Q Consensus       148 ~~~Li~~~~~  157 (680)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.04  E-value=0.0058  Score=55.81  Aligned_cols=100  Identities=15%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             HHHHhhcCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 037256          367 ENMFNDIHPSERNVSSWNVLIAGYGMH-----GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA-------------  428 (680)
Q Consensus       367 ~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-------------  428 (680)
                      ...|+......+|-.+|..++..|.+.     |..+=....++.|.+-|+.-|..+|+.||+.+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            445555544566777777777777643     66777777888888999999999999998876542             


Q ss_pred             ---CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256          429 ---GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       429 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  466 (680)
                         .+.+-|++++++|...|+.||.+++..+++.+++.+..
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence               23467899999999999999999999999999887753

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.02  E-value=0.014  Score=47.20  Aligned_cols=79  Identities=11%  Similarity=0.155  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGV-KPDHITFTSILSACSHAG--------LIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      ...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..        ++-+.+.+++.|...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666667999999999999999999 899999999999876543        3456778888998889999999999


Q ss_pred             HHHHHHHh
Q 037256          455 CMVDMLGR  462 (680)
Q Consensus       455 ~li~~~~~  462 (680)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.01  E-value=0.015  Score=60.06  Aligned_cols=122  Identities=12%  Similarity=0.051  Sum_probs=74.9

Q ss_pred             CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhH
Q 037256          307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS--NMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSS  382 (680)
Q Consensus       307 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~  382 (680)
                      +.+.....+..++..+....+++.+..++-.....  ....-..+..++|+.|.+.|..+++..+++.=..-  -||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            33555666666666666666666666666555443  22222334456777777777777777766653221  467777


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA  428 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  428 (680)
                      +|.||..+.+.|++..|.++..+|..++...+..|+.-.+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777777777776666666666666555555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0081  Score=57.76  Aligned_cols=96  Identities=10%  Similarity=0.045  Sum_probs=76.8

Q ss_pred             CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH--------HHHHHHHHHccCCCCCchHHH
Q 037256          447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP-NDSVWGALLLACRIH--------GEIAANYLFQLEPEHTGYFVL  516 (680)
Q Consensus       447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------~~~~~~~~~~l~p~~~~~~~~  516 (680)
                      +-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+-.++...        ++..+++++.++|.|......
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            567788888888888888888888888776 4444 344454444444433        788899999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          517 MSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       517 l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      |+-.+...|++.+|...|+.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.01  E-value=0.033  Score=50.51  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=60.5

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMV  457 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  457 (680)
                      ...|..+...+...|++++|+..|++.......|.  ..++..+...+...|++++|...++...+.. +.....+..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            44566666777777888888888877776422221  2366667777777888888888887777642 22334455555


Q ss_pred             HHHH-------hcCCHHHHHHHHHh
Q 037256          458 DMLG-------RAGCLYEAFDMIKQ  475 (680)
Q Consensus       458 ~~~~-------~~g~~~~A~~~~~~  475 (680)
                      ..+.       +.|++++|+..+++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            5555       66777766655543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.99  E-value=0.079  Score=55.72  Aligned_cols=232  Identities=14%  Similarity=0.123  Sum_probs=113.6

Q ss_pred             HHHHHHHHhccCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 037256          113 FPFVLKACASNSLILEGKV--VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAE  190 (680)
Q Consensus       113 ~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  190 (680)
                      ++..=++|.+.++..--+-  -++++.+.|-.|+....   ...++-.|.+.+|.++|.+                  +|
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G  659 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SG  659 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cC
Confidence            4444555555555443332  24456677766776543   3456667899999888764                  46


Q ss_pred             CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 037256          191 KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFD  270 (680)
Q Consensus       191 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~  270 (680)
                      .-..|+++|..|+--          ....-+...|+.++-+.+...-.+..  .++.--.+-..++...|+.++|..+. 
T Consensus       660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~-  726 (1081)
T KOG1538|consen  660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC-  726 (1081)
T ss_pred             chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh-
Confidence            667777777776532          12223334444444333322211110  00000112234444555555554432 


Q ss_pred             hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256          271 MMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLR  350 (680)
Q Consensus       271 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~  350 (680)
                                       ..+|-.+-+.++-+++-    ..+..+...+...+-+...+..|.++|..+-+.         
T Consensus       727 -----------------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------  776 (1081)
T KOG1538|consen  727 -----------------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------  776 (1081)
T ss_pred             -----------------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence                             22333333333333322    122333334444444555566666666655322         


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhH-----------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSS-----------WNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-----------~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      .+++++....+++++|..+-++..+..+|+..           |.---.+|-+.|+-.+|..+++++..
T Consensus       777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence            34666777777788877777776333444321           11112234444555555555555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.99  E-value=0.0078  Score=54.66  Aligned_cols=94  Identities=17%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTS  420 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~  420 (680)
                      ....+..+...+...|++++|...|++.....++    ..+|..+...|...|++++|++.+++...  +.|+. .++..
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~  111 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHH
Confidence            3455666777788889999999988887433332    34788888889999999999999988887  45543 35555


Q ss_pred             HHHHHH-------ccCCHHHHHHHHHHh
Q 037256          421 ILSACS-------HAGLIDEGRKCFADM  441 (680)
Q Consensus       421 ll~a~~-------~~g~~~~a~~~~~~m  441 (680)
                      +...+.       ..|++++|...+++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            555555       667777666555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.95  E-value=0.022  Score=49.65  Aligned_cols=92  Identities=10%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHA  428 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~  428 (680)
                      -++...+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|.....  +.||. ..+-.+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence            3445556778999999999988754454 466788888888889999999999998888  45554 5777777888889


Q ss_pred             CCHHHHHHHHHHhhhc
Q 037256          429 GLIDEGRKCFADMTKL  444 (680)
Q Consensus       429 g~~~~a~~~~~~m~~~  444 (680)
                      |+.+.|++.|+..+..
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999888776

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.77  Score=49.12  Aligned_cols=201  Identities=11%  Similarity=0.093  Sum_probs=114.8

Q ss_pred             CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CC--------CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 037256          107 SSNSYTFPFVLKACASNSLILEGKVVHGDIIRT-GF--------LSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLV  177 (680)
Q Consensus       107 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~  177 (680)
                      .|.+..|..+.......-.++.|+..|-+.... |+        -.+.....+=+.+|  .|++++|++++-++..+|. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence            466677877777766666677777666433211 11        11111122222332  4899999999998888774 


Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV  253 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li  253 (680)
                          .|..+.+.|++-...++++.   -|-..|    ...+..+...++....+++|.+.+.+--..         ..++
T Consensus       766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~  829 (1189)
T KOG2041|consen  766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI  829 (1189)
T ss_pred             ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence                34556666777666555542   111111    234666666666666777777766543211         2356


Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                      .+|.+..++++-+.+-+.+++.. ...-.|...+.+.|.-++|.+.|-+--    .|     ...+.+|..++++.+|.+
T Consensus       830 ecly~le~f~~LE~la~~Lpe~s-~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave  899 (1189)
T KOG2041|consen  830 ECLYRLELFGELEVLARTLPEDS-ELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE  899 (1189)
T ss_pred             HHHHHHHhhhhHHHHHHhcCccc-chHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence            66666666666666666665532 334556677777777777777654321    11     133455666666666655


Q ss_pred             HHH
Q 037256          334 FHG  336 (680)
Q Consensus       334 i~~  336 (680)
                      +-+
T Consensus       900 laq  902 (1189)
T KOG2041|consen  900 LAQ  902 (1189)
T ss_pred             HHH
Confidence            543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.93  E-value=0.011  Score=58.64  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAG-YGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS  426 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  426 (680)
                      +|..++...-+.+.++.|+.+|.+.....+ +...|-..... |...++.+.|.++|+...+. +..+...|...+.-+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            444455555555555555555555532211 12222222222 22234444466666665553 3334444555555555


Q ss_pred             ccCCHHHHHHHHHHhhhc-CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          427 HAGLIDEGRKCFADMTKL-SVKP-EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +.|+.+.++.+|++.... .-.. ....|...++.=.+.|+++.+.++.+++
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666666666666666554 2122 2245666666666666666666666554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.92  E-value=0.018  Score=59.54  Aligned_cols=119  Identities=14%  Similarity=0.109  Sum_probs=69.8

Q ss_pred             CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHH
Q 037256          207 LLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICN--AFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISW  280 (680)
Q Consensus       207 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~  280 (680)
                      .+.+...+..++..+....+++.++.++-.....  ....-..+..++|+.|.+.|..+.+..++..=..    +|..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445556666666666666666666665555443  1222233445666666666666666666654333    566666


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh
Q 037256          281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL  325 (680)
Q Consensus       281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (680)
                      |.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            666666666666666666666666555555666665555555443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.25  Score=46.33  Aligned_cols=183  Identities=14%  Similarity=0.171  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHH---cC-CCCchH-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHH
Q 037256          328 RQLGRKFHGYIIN---SN-MKIDAT-LRNAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKA  399 (680)
Q Consensus       328 ~~~a~~i~~~~~~---~~-~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A  399 (680)
                      .++..+++..++.   .| ..++.. ++..+.-+...+|+.+.|...++++...-|+   +.-..+|.  +-..|++++|
T Consensus        28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A  105 (289)
T KOG3060|consen   28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEA  105 (289)
T ss_pred             HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhH
Confidence            3444455544432   23 444443 3445556667789999999999987444343   22233222  3457899999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037256          400 LEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PL  478 (680)
Q Consensus       400 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  478 (680)
                      +++++...+.. +-|.+++..=+...-..|+.-+|++-+....+ -+..|.+.|.-+.+.|...|++++|.-.++++ -+
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            99999999864 34556777666666677877788887777766 36789999999999999999999999999987 34


Q ss_pred             CCCHhHHH-HHHHHHHHH--------HHHHHHHHHccCCCCCchH
Q 037256          479 PPNDSVWG-ALLLACRIH--------GEIAANYLFQLEPEHTGYF  514 (680)
Q Consensus       479 ~p~~~~~~-~ll~a~~~~--------~~~~~~~~~~l~p~~~~~~  514 (680)
                      .|-...|. .+-......        +++.+++.+++.|.+....
T Consensus       184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL  228 (289)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence            55443332 222222111        6677888889998654433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.83  E-value=0.02  Score=52.15  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC--cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN--SYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAAL  151 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L  151 (680)
                      ....|..+...+...|++++|+..|++.......+.  ...+..+...+...|++++|...+...++.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            344677777888888999999999998876543332  2466777777888889999988888888764 3345566666


Q ss_pred             HHHHHhcCChHHHH
Q 037256          152 VDMYAKCGQTDDGC  165 (680)
Q Consensus       152 i~~~~~~g~~~~A~  165 (680)
                      ...|...|+...+.
T Consensus       113 g~~~~~~g~~~~a~  126 (172)
T PRK02603        113 AVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHcCChHhHh
Confidence            77777777655444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.81  E-value=0.055  Score=58.33  Aligned_cols=63  Identities=8%  Similarity=0.148  Sum_probs=38.9

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ...|.++.......|++++|...+++..+  +.|+...|..+...+...|+.++|.+.+++....
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34555554445555666666666666666  4456556666666666666666666666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.81  E-value=0.19  Score=49.97  Aligned_cols=194  Identities=13%  Similarity=0.161  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC--HhhHHHHHHHHhhhcchHHHHHHH
Q 037256          261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDC---KPN--PVTALILVSACTYLGSRQLGRKFH  335 (680)
Q Consensus       261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~i~  335 (680)
                      ++++|...|++           ....|-..|++++|.+.|.+..+...   .+.  ...|......+ +..+++.|...+
T Consensus        30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~   97 (282)
T PF14938_consen   30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY   97 (282)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred             CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence            56666665543           45566777777777777766542110   110  01122222222 222444444433


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHc----C
Q 037256          336 GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH-GHGRKALEFFSQMLEE----G  410 (680)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g  410 (680)
                                     ...+..|.+.|++..|-+.+..+             ...|... |++++|++.|++..+.    |
T Consensus        98 ---------------~~A~~~y~~~G~~~~aA~~~~~l-------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~  149 (282)
T PF14938_consen   98 ---------------EKAIEIYREAGRFSQAAKCLKEL-------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG  149 (282)
T ss_dssp             ---------------HHHHHHHHHCT-HHHHHHHHHHH-------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHhcCcHHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence                           34456677888888877777665             5566666 8899999999887653    3


Q ss_pred             CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-----CcChH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256          411 VKPDH--ITFTSILSACSHAGLIDEGRKCFADMTKLSV-----KPEVK-HYACMVDMLGRAGCLYEAFDMIKQM-PLPPN  481 (680)
Q Consensus       411 ~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  481 (680)
                       .|..  ..+..+...+.+.|++++|.++|++......     ..+.. .|-..+-++...|++..|.+.+++. ...|.
T Consensus       150 -~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  150 -SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             -ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence             2221  2566777889999999999999999876522     22232 3334455667789999999999885 33331


Q ss_pred             ------HhHHHHHHHHHHHH
Q 037256          482 ------DSVWGALLLACRIH  495 (680)
Q Consensus       482 ------~~~~~~ll~a~~~~  495 (680)
                            ......|+.+|...
T Consensus       229 F~~s~E~~~~~~l~~A~~~~  248 (282)
T PF14938_consen  229 FASSREYKFLEDLLEAYEEG  248 (282)
T ss_dssp             STTSHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHHhC
Confidence                  23445566665543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.79  E-value=0.74  Score=46.78  Aligned_cols=445  Identities=10%  Similarity=0.050  Sum_probs=241.8

Q ss_pred             HHHHHHhh----hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHH
Q 037256           26 RQIHSSLT----TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYST  100 (680)
Q Consensus        26 ~~~h~~~~----~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  100 (680)
                      -++..++.    |...|=+||.-|.. .      |..++-+++++++..+.| =..+|..-+++-...++++....+|.+
T Consensus        29 lrLRerIkdNPtnI~S~fqLiq~~~t-q------~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r  101 (660)
T COG5107          29 LRLRERIKDNPTNILSYFQLIQYLET-Q------ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR  101 (660)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhh-h------hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence            45555555    78888899998887 7      999999999999998877 456899888887778889999999988


Q ss_pred             HHhCCCCCCcccHHHHHHHHhccCChHH------HHHHHHHHHH-hCCCC-chhHHHHHHHHHH---------hcCChHH
Q 037256          101 MRRSGISSNSYTFPFVLKACASNSLILE------GKVVHGDIIR-TGFLS-DSYVQAALVDMYA---------KCGQTDD  163 (680)
Q Consensus       101 m~~~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~Li~~~~---------~~g~~~~  163 (680)
                      -+....  +...|..-+.--.+....-+      -.+.++..+. .+++| ....|+..+...-         ...++|.
T Consensus       102 CL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~  179 (660)
T COG5107         102 CLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK  179 (660)
T ss_pred             HHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence            876543  45556655554443332221      2234444443 24444 3345555554332         1223445


Q ss_pred             HHHHHhcCCC-C--C-------hhHHHHHHHHHHhC---C----CccHHHHHHHHHHH--cCCCC----CHhHHHH----
Q 037256          164 GCKVFDEMSV-R--D-------LVSWTVMITAYEQA---E----KPEEALILFQKTQQ--EGLLS----DSVTIVS----  216 (680)
Q Consensus       164 A~~~f~~~~~-~--~-------~~~~~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~----  216 (680)
                      .++.+.++.. |  |       -..|..=+.-....   |    -+-.|...+++...  .|...    +..|++-    
T Consensus       180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~  259 (660)
T COG5107         180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART  259 (660)
T ss_pred             HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence            5555655542 1  1       11121111111100   1    13345555555532  23221    1222222    


Q ss_pred             -------HHHHHhc-----cCC-hHH-HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 037256          217 -------VASAVGQ-----LGD-VLK-AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNS  282 (680)
Q Consensus       217 -------ll~~~~~-----~~~-~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~  282 (680)
                             .|+--..     .++ ..+ .--+|++.+.. +.-...+|----..+...++-+.|....+.-..-.+. .+.
T Consensus       260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~  337 (660)
T COG5107         260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTM  337 (660)
T ss_pred             ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hhe
Confidence                   2211111     111 111 11223333322 2223344444444556677788888777665432111 111


Q ss_pred             -HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          283 -MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC---TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       283 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                       +-..|--..+.++....|+...+.     ...-.+.+.+=   ...|+++.-.+++-   +. ...-..+|..+++.-.
T Consensus       338 ~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~---kr-~~k~t~v~C~~~N~v~  408 (660)
T COG5107         338 FLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLL---KR-INKLTFVFCVHLNYVL  408 (660)
T ss_pred             eHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHH---HH-HhhhhhHHHHHHHHHH
Confidence             222333344444444444433220     00000001100   11222322222211   11 1134567778888888


Q ss_pred             HcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHH
Q 037256          359 KCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF-TSILSACSHAGLIDEG  434 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a  434 (680)
                      +..-++.|..+|-+..+.   .+++..++++|.-++ .|+..-|..+|+--..  .-||...| .-.+.-+...++-+.|
T Consensus       409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~na  485 (660)
T COG5107         409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENA  485 (660)
T ss_pred             HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHH
Confidence            888889999999887443   567888899998776 4677788888876555  34555433 4455666778888999


Q ss_pred             HHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 037256          435 RKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACR  493 (680)
Q Consensus       435 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~  493 (680)
                      ..+|+..+.+ .-..-...|..||+-=..-|++..+..+=++| ..-|...+...+.+-+.
T Consensus       486 raLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~  546 (660)
T COG5107         486 RALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence            9999866654 11123568899999888999998888777776 34455544445554444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.78  E-value=0.02  Score=58.92  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI  421 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  421 (680)
                      ...+..+..+|.+.|++++|...++++....| +...|..+..+|...|++++|+..|++..+  +.|+...+...
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~  109 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            33344444445555555555555555433333 244455555555555555555555555555  44444433333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.76  E-value=0.71  Score=46.08  Aligned_cols=269  Identities=19%  Similarity=0.204  Sum_probs=173.5

Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhhcchHH
Q 037256          258 RCGNVEKARLVFDMME---KRDLISWNSMLTG--YIQNGQASEALLLFDEMQNSDCKPNP--VTALILVSACTYLGSRQL  330 (680)
Q Consensus       258 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~  330 (680)
                      -.|+-..|.+.-.+..   ..|....-.++.+  -.-.|++++|.+-|+.|...   |..  ..+..|.-.-.+.|+.+.
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            4678888887766544   2455555555543  34579999999999999862   332  233344444567888899


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCCCHh--HHHHHHHHHH---hcCChHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP---SERNVS--SWNVLIAGYG---MHGHGRKALEF  402 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~--~~~~li~~~~---~~g~~~~A~~l  402 (680)
                      |+++-+..-..- +.-...+.+.+...+..|+++.|+++.+.-..   .++++.  .--.|+.+-+   -.-+...|...
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            988887776543 33456778899999999999999999986522   245543  2333444322   22346666666


Q ss_pred             HHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 037256          403 FSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----P  477 (680)
Q Consensus       403 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~  477 (680)
                      -.+..+  +.||.+ .-.....++.+.|++.++-.+++.+-+..  |.+..+...+  +.|.|+.  +++-+++.    .
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s  323 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRLKRAKKLES  323 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence            666655  788876 45555678999999999999999998864  4444443332  4455543  33222222    3


Q ss_pred             CCCCHh-HHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 037256          478 LPPNDS-VWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAA-SNKWREVGKLREDMKN  539 (680)
Q Consensus       478 ~~p~~~-~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~  539 (680)
                      ++||.. +-.++..+-...     ++..++.+..+.|.. +.|.+|+++-.. .|+-.++...+-+..+
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            466543 322233332222     566677788899974 788899988644 4888888777766554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.73  E-value=0.47  Score=45.78  Aligned_cols=89  Identities=11%  Similarity=0.036  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLG  461 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~  461 (680)
                      ..++.-|-...-..+|...+..+...   .-..- ..+..-|.+.|.+..|..-++.+++.  +.+...+....|+++|.
T Consensus       148 ~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~  223 (243)
T PRK10866        148 SKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR  223 (243)
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            33444444444455555444444321   01111 13455678888888888888888887  55566667778888999


Q ss_pred             hcCCHHHHHHHHHhC
Q 037256          462 RAGCLYEAFDMIKQM  476 (680)
Q Consensus       462 ~~g~~~~A~~~~~~m  476 (680)
                      ..|..++|.++...+
T Consensus       224 ~lg~~~~a~~~~~~l  238 (243)
T PRK10866        224 QLQLNAQADKVAKII  238 (243)
T ss_pred             HcCChHHHHHHHHHH
Confidence            999999888776543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.053  Score=54.13  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             HccCCHHHHHHHHHHhhhc---CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          426 SHAGLIDEGRKCFADMTKL---SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+.|++..|.+.+.+.+..   +..|+...|.....+..+.|++++|+.--++.
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            3456666666666665543   44555556666666666777777776655443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.72  E-value=0.0076  Score=45.03  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGAL  488 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l  488 (680)
                      ..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3455556666665555442 224445555556666666666666666655 334444444333

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=1.2  Score=48.27  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL  430 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~  430 (680)
                      +--+.-+...|+..+|.++-.+.  .-||-..|--=+.+++..+++++-.++-+.+.      .+.-|.-...+|.+.|+
T Consensus       688 ~dTv~~li~~g~~k~a~ql~~~F--kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n  759 (829)
T KOG2280|consen  688 HDTVTTLILIGQNKRAEQLKSDF--KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN  759 (829)
T ss_pred             HHHHHHHHHccchHHHHHHHHhc--CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence            33444555667777777777777  66666666666777777777766555544332      14456666777777888


Q ss_pred             HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      .++|..++.+...     .    .-.+.+|.+.|++.+|.++--+
T Consensus       760 ~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  760 KDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence            8877777655431     1    1356777777777777666544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.72  E-value=0.11  Score=50.26  Aligned_cols=65  Identities=12%  Similarity=0.129  Sum_probs=44.6

Q ss_pred             CChHHHHHHhhhccCCCCCcc-h---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSF-L---WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKAC  120 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  120 (680)
                      |++++|.+.|+.+....|+.. .   .-.+..++.+.+++++|...|++..+.-+.-....+...+.+.
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            899999999998888877542 2   1345567788899999999998888764433333444444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.087  Score=49.36  Aligned_cols=170  Identities=15%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKR--D--------LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALIL  318 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  318 (680)
                      +++|+..|.-...+++-...|+.-..+  .        ...-+.++..+.-.|.+.-.+..+++.++...+.++.-...+
T Consensus       139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L  218 (366)
T KOG2796|consen  139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL  218 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence            455555555544444444444433221  1        223455666666777788888888888876656677777778


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHH-----HHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHh
Q 037256          319 VSACTYLGSRQLGRKFHGYIINSNMKIDATLRN-----AVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGM  392 (680)
Q Consensus       319 l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~-----~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~  392 (680)
                      .+.-.+.|+.+.+...++...+..-..+....+     .....|.-.+++.+|...|.++... ..|++.-|.=.-+..-
T Consensus       219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            888888888888888888776643333333333     3334455567778888888777433 3345555544444444


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037256          393 HGHGRKALEFFSQMLEEGVKPDHITFTS  420 (680)
Q Consensus       393 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~  420 (680)
                      .|+..+|++.++.|.+  ..|...+-.+
T Consensus       299 lg~l~DAiK~~e~~~~--~~P~~~l~es  324 (366)
T KOG2796|consen  299 LGKLKDALKQLEAMVQ--QDPRHYLHES  324 (366)
T ss_pred             HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence            6788888888888887  4565554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.64  E-value=0.046  Score=45.87  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhcC-C-CcChHHHHHHHHHHH
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGRKCFADMTKLS-V-KPEVKHYACMVDMLG  461 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~-~p~~~~~~~li~~~~  461 (680)
                      +..++-..|+.++|+.+|++....|.....  ..+..+.+++...|++++|..+|+...... - +-+......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            345566778888888888888887766543  356667777888888888888888777641 0 112222223344667


Q ss_pred             hcCCHHHHHHHHHh
Q 037256          462 RAGCLYEAFDMIKQ  475 (680)
Q Consensus       462 ~~g~~~~A~~~~~~  475 (680)
                      ..|+.++|++.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            78888888777654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.61  E-value=1  Score=46.00  Aligned_cols=425  Identities=12%  Similarity=0.081  Sum_probs=210.2

Q ss_pred             hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhC--CCCC--
Q 037256           35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRS--GISS--  108 (680)
Q Consensus        35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p--  108 (680)
                      ....+-++++|-.        .+++.-........+..| ...|-.+..++  -+.+.+.+|++.+..-.+.  +..|  
T Consensus        46 Evl~grilnAffl--------~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~  116 (549)
T PF07079_consen   46 EVLGGRILNAFFL--------NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPW  116 (549)
T ss_pred             HHHhhHHHHHHHH--------hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccch
Confidence            3445566666666        566666665555555544 23355554443  2456666666666544332  2111  


Q ss_pred             -C---------cccHHHHHHHHhccCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 037256          109 -N---------SYTFPFVLKACASNSLILEGKVVHGDIIRTGF----LSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR  174 (680)
Q Consensus       109 -~---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~  174 (680)
                       |         -.-=+..+..+...|++.+|+.+++.++..=+    .-+..+||.++-++++.=-++.    -+.+...
T Consensus       117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~d  192 (549)
T PF07079_consen  117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSD  192 (549)
T ss_pred             hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccc
Confidence             1         11112233445566666666666666554322    2456666665555544311111    1111111


Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc--CChHHHHHHHHHHHHccCCCC-hhHHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQL--GDVLKAQAVHGYAICNAFLED-LCIQNS  251 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~  251 (680)
                      =..-|--||..|.+.=+.-++      -.=..+.|-...+..++....-.  ..+.--.+++....+.-+.|+ .-+...
T Consensus       193 l~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~  266 (549)
T PF07079_consen  193 LYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEP  266 (549)
T ss_pred             cChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHH
Confidence            112344444444332111000      00001223333333333322211  122223344444444434443 223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHH------
Q 037256          252 IVAMYARCGNVEKARLVFDMME--------KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALI------  317 (680)
Q Consensus       252 Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------  317 (680)
                      |+.-+.+  +.+++..+.+.+.        +.=+.++..++...++.++..+|-+.+.-+.--  .|+...-.-      
T Consensus       267 L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~  342 (549)
T PF07079_consen  267 LKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPK  342 (549)
T ss_pred             HHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHH
Confidence            5555544  4444444433332        233567888888999999999998888776543  333221111      


Q ss_pred             -HHHHHh-hhc---chHHHHHHHHHHHHcCCCCchHHHHHHH---HHHHHcCC-HHHHHHHHhhcCCCCC-CHhHHHHHH
Q 037256          318 -LVSACT-YLG---SRQLGRKFHGYIINSNMKIDATLRNAVM---DMYAKCGD-LDTAENMFNDIHPSER-NVSSWNVLI  387 (680)
Q Consensus       318 -ll~a~~-~~g---~~~~a~~i~~~~~~~~~~~~~~~~~~li---~~y~k~g~-~~~A~~~f~~~~~~~~-~~~~~~~li  387 (680)
                       +-+..+ .-.   +...-..++..+...++.... ...-|+   .-+-+.|. -++|.++++.+....+ |...-|...
T Consensus       343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~  421 (549)
T PF07079_consen  343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF  421 (549)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence             111111 111   122222333333333322111 111121   22333444 7888888888744433 444333322


Q ss_pred             ----HHHHh---cCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          388 ----AGYGM---HGHGRKALEFFSQMLEEGVKPDHI----TFTSILSA--CSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       388 ----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                          ..|.+   .....+-+++-+-..+.|+.|-.+    .-+.|..|  ....|++.++.-+-.-+.+  +.|++.+|.
T Consensus       422 ~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~R  499 (549)
T PF07079_consen  422 LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYR  499 (549)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHH
Confidence                22322   123445555666666778887543    33444443  4567899888876666654  689999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHH
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGA  487 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~  487 (680)
                      .+.-.+....+++||++++..+|  |+...|++
T Consensus       500 LlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds  530 (549)
T PF07079_consen  500 LLGLCLMENKRYQEAWEYLQKLP--PNERMRDS  530 (549)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence            99988899999999999999986  56666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.61  E-value=0.13  Score=55.55  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhc--------CChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHH
Q 037256          363 LDTAENMFNDIHPSERN-VSSWNVLIAGYGMH--------GHGRKALEFFSQMLEEG-VKPDHITFTSILSACSHAGLID  432 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~  432 (680)
                      .+.|..+|++.....|+ ...|..+..+|...        ++...+.+...+..... ...+...|..+.-.....|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            45666666666555554 23333332222211        11233344444433321 2233456666655556678899


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHH
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVW  485 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~  485 (680)
                      +|...++++...+  |+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus       438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            9999988888764  67788888888888899999998888775 555554444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.59  E-value=0.0082  Score=44.37  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ...+.+.|++++|.+.|+++....| +...|..+...+.+.|++++|...|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455666666666666666655444 345566666666666666666666666665

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.54  E-value=0.026  Score=54.11  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFF  403 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~  403 (680)
                      .+++++|...|..+++.. +.|.+.|..-..+|.+.|.++.|.+--+......|+ ..+|..|..+|...|++++|++.|
T Consensus        94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay  172 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY  172 (304)
T ss_pred             hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            344444444444444433 334444444555566666666666555555333443 345666666666666666666666


Q ss_pred             HHHHHcCCCCCHHHHHHHH
Q 037256          404 SQMLEEGVKPDHITFTSIL  422 (680)
Q Consensus       404 ~~m~~~g~~p~~~t~~~ll  422 (680)
                      ++.++  +.|+..+|-.=|
T Consensus       173 kKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  173 KKALE--LDPDNESYKSNL  189 (304)
T ss_pred             Hhhhc--cCCCcHHHHHHH
Confidence            66666  566665554433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.39  E-value=0.022  Score=52.09  Aligned_cols=99  Identities=10%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             HHHHhhhccCCCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC-----------
Q 037256           61 ARSLFNSIHNDKSYSFLWNTMIRAYANN-----GHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS-----------  124 (680)
Q Consensus        61 A~~~f~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----------  124 (680)
                      -...|+..+....|-.+|..++..|.+.     |..+=....+..|.+.|+.-|..+|+.||..+=+..           
T Consensus        33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F  112 (228)
T PF06239_consen   33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF  112 (228)
T ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence            3455666533333667777777777654     455556666778888888888888888888765422           


Q ss_pred             -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037256          125 -----LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG  159 (680)
Q Consensus       125 -----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g  159 (680)
                           +-+-|.+++++|...|+-||..++..|++.+++.+
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                 33457788888888888888888888888775544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.38  E-value=0.1  Score=43.89  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=53.8

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC--ChhHHHHHHHHHH
Q 037256          182 MITAYEQAEKPEEALILFQKTQQEGLLSD--SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE--DLCIQNSIVAMYA  257 (680)
Q Consensus       182 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~  257 (680)
                      +..++-..|+.++|+.+|++....|....  ...+..+.+.+...|++++|..+++........+  +..+...+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566677888888888888887776544  2345556666677777777777777666542110  1222222333455


Q ss_pred             hcCCHHHHHHHHHhc
Q 037256          258 RCGNVEKARLVFDMM  272 (680)
Q Consensus       258 ~~g~~~~A~~~f~~m  272 (680)
                      ..|+.++|.+.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            556666665555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.31  E-value=0.018  Score=43.00  Aligned_cols=60  Identities=15%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNV  385 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~  385 (680)
                      .|+++.|.++++.+.+.. +.+..+...+..+|.+.|++++|.++++++....|+...|..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            344444444444444433 335555556666666666666666666666444555444433

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.27  E-value=0.022  Score=42.58  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-CHHHHHHHHHHhhh
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAG-LIDEGRKCFADMTK  443 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~~~~~m~~  443 (680)
                      +..+|..+...+...|++++|+..|++..+  +.|+.. .|..+..++...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345677777777777777777777777777  456543 6666666777777 57777777776654

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.05  E-value=1  Score=40.24  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=49.2

Q ss_pred             CCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---CHhHHHH
Q 037256          309 KPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER---NVSSWNV  385 (680)
Q Consensus       309 ~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~~~  385 (680)
                      .|+...-..+..+....|+..+|...+++....-+..|..+.-.+.++....++...|...++++.+..|   ++.+--.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3444444445555555555555555555555444444555555555555555555555555555422211   1222333


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +...|...|++.+|..-|+....
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH
Confidence            34445555555555555555554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.95  E-value=0.017  Score=43.30  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHG-HGRKALEFFSQMLE  408 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~  408 (680)
                      +..+|..+...+.+.|++++|...|++.....| +...|..+..+|...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345667777778888888888888887754445 4667788888888888 68888888887776

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.90  E-value=0.014  Score=43.16  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRS  104 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  104 (680)
                      |++++|++.|+.+....| +...|..+...+.+.|++++|...|+++.+.
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888888888888888877 5667888888888888888888888888764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.12  Score=50.02  Aligned_cols=96  Identities=9%  Similarity=0.055  Sum_probs=55.5

Q ss_pred             CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C--ChHHHHHHHhcCCC---CChhHHHHH
Q 037256          109 NSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC-G--QTDDGCKVFDEMSV---RDLVSWTVM  182 (680)
Q Consensus       109 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~-g--~~~~A~~~f~~~~~---~~~~~~~~l  182 (680)
                      |...|-.|-.+|...++...|...|....+.. .+++..+..+...+... |  ...++..+|+++..   .|+.+...|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            55566666666666666666666666666553 34444444444433322 1  23455666665542   245555666


Q ss_pred             HHHHHhCCCccHHHHHHHHHHHc
Q 037256          183 ITAYEQAEKPEEALILFQKTQQE  205 (680)
Q Consensus       183 i~~~~~~g~~~~A~~~~~~m~~~  205 (680)
                      ...+.+.|++.+|...++.|.+.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc
Confidence            66777777777777777777765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.80  E-value=0.095  Score=51.06  Aligned_cols=92  Identities=16%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACM  456 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l  456 (680)
                      |+.-+..+.+.|++++|+..|+.+.+  ..|+.    ..+..+..++...|++++|...|+.+.+.  +-+.....+-.+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            33333333445666666666666665  23443    24445555666666666666666666653  112223334444


Q ss_pred             HHHHHhcCCHHHHHHHHHhC
Q 037256          457 VDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       457 i~~~~~~g~~~~A~~~~~~m  476 (680)
                      ...+...|+.++|...+++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            55555666666666666554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.78  E-value=0.16  Score=50.68  Aligned_cols=259  Identities=13%  Similarity=0.036  Sum_probs=115.1

Q ss_pred             HHHhCCCccHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCChHHHHHHHHHHH--Hc--cCC-CChhHHHHHHHH
Q 037256          185 AYEQAEKPEEALILFQKTQQEGLLSDSV----TIVSVASAVGQLGDVLKAQAVHGYAI--CN--AFL-EDLCIQNSIVAM  255 (680)
Q Consensus       185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~Li~~  255 (680)
                      -+++.|+....+.+|+..++.|- -|..    .|..+-.+|.-.+++++|.++|..=+  ..  |-. -.......|.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            35667777777777777776652 2322    34455556666677777777654321  11  100 011122223334


Q ss_pred             HHhcCCHHHHHHHHHhcC-------C--CChhHHHHHHHHHHHcCC--------------------hhHHHHHHHHH---
Q 037256          256 YARCGNVEKARLVFDMME-------K--RDLISWNSMLTGYIQNGQ--------------------ASEALLLFDEM---  303 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m---  303 (680)
                      +--.|.+++|.-...+-.       .  .....+..+...|...|+                    ++.|.++|.+=   
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            444555555543322211       0  012334445555554443                    12233333221   


Q ss_pred             -HhCCCC-CCHhhHHHHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-
Q 037256          304 -QNSDCK-PNPVTALILVSACTYLGSRQLGRKFHGYIIN----SNMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHP-  375 (680)
Q Consensus       304 -~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-  375 (680)
                       ...|-. .-...|..+-..|.-.|+++.+...|+.-+.    .|-. .....+..|..++.-.|+++.|.+.|..... 
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence             111100 0112344444444555666666666654321    2211 1223344455555555666666655554310 


Q ss_pred             ----CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          376 ----SER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLE----EG-VKPDHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       376 ----~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                          ..+  ...+..+|...|--...+++|+.++.+=..    .+ ..-....+.+|..++...|..++|+.+.+.-.+.
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                011  222334455555555555555555443221    00 1112234555555555555555555555554444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=1.9  Score=43.59  Aligned_cols=165  Identities=13%  Similarity=0.050  Sum_probs=104.3

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhH-HHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLIS-WNSMLT--GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~-~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      .++.-.|+.++|...--.+.+-|... +...++  ++--.++.+.|...|++.+..  .|+...-.+.          ..
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~----------~~  244 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA----------SM  244 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH----------hh
Confidence            35566677777777666555543322 222232  334567788888888877754  4554432221          11


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-----NVSSWNVLIAGYGMHGHGRKALEFFSQ  405 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~  405 (680)
                      ....+......|            ....+.|.+..|.+.|.+.....|     +...|-.......+.|+..+|+.--++
T Consensus       245 ~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  245 MPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            122222223332            446788999999999998866555     344566666777889999999988888


Q ss_pred             HHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          406 MLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       406 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ...  +.|... .+..-..++.-.+++++|.+-++...+.
T Consensus       313 Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  313 ALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            766  444433 4444445667788999999999988776

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.63  E-value=2  Score=40.28  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDML  460 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~  460 (680)
                      +..++.-|-......+|...+..+...   .-.. -..+..-|.+.|.+..|..-++.+++.  +.+........|+..|
T Consensus       113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y  188 (203)
T PF13525_consen  113 FEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY  188 (203)
T ss_dssp             HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            344455555555666665555544431   0011 122455678888888888888888876  3333345566777888


Q ss_pred             HhcCCHHHH
Q 037256          461 GRAGCLYEA  469 (680)
Q Consensus       461 ~~~g~~~~A  469 (680)
                      .+.|..+.|
T Consensus       189 ~~l~~~~~a  197 (203)
T PF13525_consen  189 YKLGLKQAA  197 (203)
T ss_dssp             HHTT-HHHH
T ss_pred             HHhCChHHH
Confidence            888877744

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=4.5  Score=43.69  Aligned_cols=200  Identities=12%  Similarity=0.021  Sum_probs=99.6

Q ss_pred             CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHh-CCCCCCcc--cHH--HH--HHHHhccCChHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRR-SGISSNSY--TFP--FV--LKACASNSLILE  128 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~--t~~--~l--l~~~~~~~~~~~  128 (680)
                      -.+++|.+..+.    .|-...|..+...-.+.-.++-|...|-+... .|++.-..  |..  .+  ....+--|.+++
T Consensus       677 vgledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  677 VGLEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             hchHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            345667666554    44556788777766665566666666655432 12211000  000  00  111223478888


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCCccHHHHHHHHH-
Q 037256          129 GKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR-----DLVSWTVMITAYEQAEKPEEALILFQKT-  202 (680)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-  202 (680)
                      |++++-++-+.++         -|.++.+.|++-...++++.-...     -..+|+.+...++....+++|.+.|..- 
T Consensus       753 aek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  753 AEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9888877765542         345566667766666666543211     1124444444444444444444443321 


Q ss_pred             ------------H--------HcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH
Q 037256          203 ------------Q--------QEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV  262 (680)
Q Consensus       203 ------------~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~  262 (680)
                                  .        ...++.|...+-.+..++.+.|.-++|.+.|-.   .+.+      .+-+..|....++
T Consensus       824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW  894 (1189)
T KOG2041|consen  824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQW  894 (1189)
T ss_pred             chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHH
Confidence                        1        112334444555555666666666665554422   2211      2234455555666


Q ss_pred             HHHHHHHHhcCCCCh
Q 037256          263 EKARLVFDMMEKRDL  277 (680)
Q Consensus       263 ~~A~~~f~~m~~~~~  277 (680)
                      .+|.++-+...-|.+
T Consensus       895 ~~avelaq~~~l~qv  909 (1189)
T KOG2041|consen  895 GEAVELAQRFQLPQV  909 (1189)
T ss_pred             HHHHHHHHhccchhH
Confidence            666666655544433

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.50  E-value=0.12  Score=49.02  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             HHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------
Q 037256          364 DTAENMFNDIHPSERNVSSWNVLIAGYGMH-----GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG---------  429 (680)
Q Consensus       364 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------  429 (680)
                      -..++.|..+.+.++|-.+|-+++..|..+     +..+=....++.|.+-|+.-|..+|..||+.+-+..         
T Consensus        51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~  130 (406)
T KOG3941|consen   51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK  130 (406)
T ss_pred             cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence            345667777765688888999999888654     556667777889999999999999999998875532         


Q ss_pred             -------CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHH-HHHHHHhC
Q 037256          430 -------LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYE-AFDMIKQM  476 (680)
Q Consensus       430 -------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m  476 (680)
                             +-+-++.++++|...|+.||.++-..|+.+++|.|..-. ..++.--|
T Consensus       131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence                   234578999999999999999999999999999887543 33443334

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.45  E-value=0.14  Score=49.97  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITF  418 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~  418 (680)
                      ...|...+..+.+.|++++|...|+.+....|+.    ..+--+...|...|++++|...|+.+...  .|+.    ..+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence            3445555555566788888888888875555543    35666777888888888888888888873  3442    244


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..+...+...|+.++|..+|+.+.+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44555677888888888888888765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.41  E-value=0.84  Score=41.81  Aligned_cols=176  Identities=14%  Similarity=0.081  Sum_probs=99.3

Q ss_pred             cCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      .|-..-|+--|.+.....|+ +..||-+.--+...|+++.|.+.|+...+  +.|.. .++..-.-++--.|+++-|.+-
T Consensus        78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence            34444555555555444554 45677777777777888888888887777  44432 2222222234456777777766


Q ss_pred             HHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHHH---HHHHHHHHHccCCCC--
Q 037256          438 FADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMI-KQMPLPPNDSVWGALLLACRIH---GEIAANYLFQLEPEH--  510 (680)
Q Consensus       438 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~~~~---~~~~~~~~~~l~p~~--  510 (680)
                      |...-+. .-.|-...|--++   -+.=++.+|..-+ ++. .+.|...|...|-.+.-.   -+..++++.+-..++  
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~  231 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS  231 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence            5554443 2233333333332   2333555554333 333 234555565555444322   233344444333333  


Q ss_pred             -----CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          511 -----TGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       511 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                           .++|.-|+.-|-..|..++|..+|+......
T Consensus       232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                 3678889999999999999999999987643

>PRK15331 chaperone protein SicA; Provisional

Probab=95.35  E-value=0.16  Score=44.62  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=79.2

Q ss_pred             HHHHHhccccccHHHHHHHhh--hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCC
Q 037256           13 DQLLKSCNFLASLRQIHSSLT--TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNG   89 (680)
Q Consensus        13 ~~~l~~~~~~~~~~~~h~~~~--~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g   89 (680)
                      ..+..+...-..++.+|+.-.  =-.+|..--+.|..        |++++|..+|.-+..-.| |..-|..|...+-..+
T Consensus        14 ~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~--------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k   85 (165)
T PRK15331         14 EMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQ--------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK   85 (165)
T ss_pred             HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence            344444444455566665433  11344445566666        999999999988776655 5556777777888888


Q ss_pred             CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256           90 HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIR  138 (680)
Q Consensus        90 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  138 (680)
                      ++++|+..|...-..+. -|...+-..-..+...|+.+.|+..|...+.
T Consensus        86 ~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         86 QFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999887655443 2444455566677788888888888887776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.35  E-value=2.8  Score=42.75  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCCC---C----hhHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          251 SIVAMYARCGNVEKARLVFDMMEKR---D----LISWNSMLTGYIQ---NGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       251 ~Li~~y~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                      .|+-.|-...+++...++++.+...   +    ...--...-++.+   .|+.++|++++..+....-.+++.|+..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4444688888888888888888753   1    1111223345556   7888999999888666656777777766655


Q ss_pred             HH
Q 037256          321 AC  322 (680)
Q Consensus       321 a~  322 (680)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            44

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.21  E-value=0.18  Score=47.25  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             CChHHHHHHhhhccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256           56 GEPNTARSLFNSIHNDKSYS----FLWNTMIRAYANNGHCVETLELYSTMRRS  104 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  104 (680)
                      |++++|.+.|+.+..+.|+.    .+.-.++.++.+.|++.+|...|+++.+.
T Consensus        19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888887765532    24555677778888888888888887765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.11  E-value=0.28  Score=41.66  Aligned_cols=49  Identities=20%  Similarity=0.467  Sum_probs=35.9

Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHH
Q 037256          445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----PLPPNDSVWGALLLACR  493 (680)
Q Consensus       445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~  493 (680)
                      ...|+..+..+++.+|+..|++..|+++++..    +++-+...|..|+.=+.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            55677888888888888888888888777665    55555777777776554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.09  E-value=0.088  Score=52.46  Aligned_cols=253  Identities=14%  Similarity=0.080  Sum_probs=120.3

Q ss_pred             HHHhCCCchHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHHHH
Q 037256           84 AYANNGHCVETLELYSTMRRSGISSNS----YTFPFVLKACASNSLILEGKVVHGDIIR--T--GFL-SDSYVQAALVDM  154 (680)
Q Consensus        84 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li~~  154 (680)
                      -+++.|+.+..+.+|+...+.|.. |.    .+|..|-++|.-.+++++|.+.|..=+-  .  |-. -..-....|.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            477888888999999988887743 33    3455666677777888888887654221  1  100 011111223333


Q ss_pred             HHhcCChHHHHHHHhcC-------CCC--ChhHHHHHHHHHHhCCCc--------------------cHHHHHHHHHHH-
Q 037256          155 YAKCGQTDDGCKVFDEM-------SVR--DLVSWTVMITAYEQAEKP--------------------EEALILFQKTQQ-  204 (680)
Q Consensus       155 ~~~~g~~~~A~~~f~~~-------~~~--~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~-  204 (680)
                      +--.|.+++|.-.-.+-       ..+  ...++..+...|...|+.                    +.|.++|.+=++ 
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            44456666665432211       111  122334455555544431                    223333332111 


Q ss_pred             ---cCCC-CCHhHHHHHHHHHhccCChHHHHHHHHHHHH----ccC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 037256          205 ---EGLL-SDSVTIVSVASAVGQLGDVLKAQAVHGYAIC----NAF-LEDLCIQNSIVAMYARCGNVEKARLVFDMME--  273 (680)
Q Consensus       205 ---~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--  273 (680)
                         .|-. .--..|..+-..|--.|+++.+...|..-+.    .|- ......+..|.+++.-.|+++.|.+.|+...  
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence               1100 0112233444444455667777766654332    121 1123345556666666666666666555322  


Q ss_pred             -----CC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256          274 -----KR--DLISWNSMLTGYIQNGQASEALLLFDEMQNS-----DCKPNPVTALILVSACTYLGSRQLGRKFHGY  337 (680)
Q Consensus       274 -----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~  337 (680)
                           .+  ...+..+|...|.-..++++|+.++.+-...     ...-....+.++..++...|..++|..+...
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                 12  2233444555555555556665555443210     0111233444555555555555555444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.07  E-value=0.093  Score=39.67  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=25.4

Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +|.+.+++++|.++++.+....| ++..|......+.+.|++++|.+.|++..+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34445555555555555433322 233444444455555555555555555554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.06  E-value=0.071  Score=45.25  Aligned_cols=96  Identities=13%  Similarity=0.168  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS  426 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  426 (680)
                      ..++.+++-++++.|+++....+.+..=....+         +-...+.         --......|+..+..+++.+|+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~---------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~   63 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN---------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFG   63 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC---------CccccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence            455667777777777777777777665111100         0000000         0112235677777777777777


Q ss_pred             ccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDML  460 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~  460 (680)
                      ..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus        64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            777777777777777776 7766777777766543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.01  E-value=0.32  Score=50.09  Aligned_cols=66  Identities=14%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                      +.+...++.+..+|.+.|++++|...|++.....|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456777788888888888888888888876666663    35888888888888888888888888774

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.96  E-value=0.081  Score=46.63  Aligned_cols=55  Identities=13%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256          352 AVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQM  406 (680)
Q Consensus       352 ~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m  406 (680)
                      .++..+...|++++|.+..+.+....| |...|..+|.+|...|+..+|++.|+++
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            344444455555555555554432222 3444555555555555555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.92  E-value=5.2  Score=41.00  Aligned_cols=429  Identities=9%  Similarity=0.035  Sum_probs=221.1

Q ss_pred             HHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 037256           63 SLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGF  141 (680)
Q Consensus        63 ~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  141 (680)
                      ++=+++.. .| |..+|-.||.-+...|..++..+++++|..- .+--...|..-+++=...+++...+.+|.+.++..+
T Consensus        30 rLRerIkd-NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l  107 (660)
T COG5107          30 RLRERIKD-NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL  107 (660)
T ss_pred             HHHHHhhc-CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence            44444443 45 8889999999999999999999999999753 222345676667666667889999999999988754


Q ss_pred             CCchhHHHHHHHHHHhcCC---------hHHHHHHHhc-C-CC-CChhHHHHHHHHHH---hCCC------ccHHHHHHH
Q 037256          142 LSDSYVQAALVDMYAKCGQ---------TDDGCKVFDE-M-SV-RDLVSWTVMITAYE---QAEK------PEEALILFQ  200 (680)
Q Consensus       142 ~~~~~~~~~Li~~~~~~g~---------~~~A~~~f~~-~-~~-~~~~~~~~li~~~~---~~g~------~~~A~~~~~  200 (680)
                      .  ...|...++--.+.+.         +-+|.++.-. + -+ .....|+..+..+-   ..|.      .+...+.|.
T Consensus       108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~  185 (660)
T COG5107         108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM  185 (660)
T ss_pred             c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            4  5566655553333321         1122222111 0 12 23345555443321   1233      344455566


Q ss_pred             HHHHcCCCC------CHhHHHHHHHHHh-------ccCChHHHHHHHHHHHH--ccCC----CChhHHHH----------
Q 037256          201 KTQQEGLLS------DSVTIVSVASAVG-------QLGDVLKAQAVHGYAIC--NAFL----EDLCIQNS----------  251 (680)
Q Consensus       201 ~m~~~g~~p------~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~----~~~~~~~~----------  251 (680)
                      +|+...+.-      |-..|..-+....       ...-+-.|.+.+.++..  .|+.    .+..++|-          
T Consensus       186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl  265 (660)
T COG5107         186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL  265 (660)
T ss_pred             HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence            655432110      0011111111110       01113344555554432  2321    12222221          


Q ss_pred             -HHHHHHhc-----CC-H-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          252 -IVAMYARC-----GN-V-EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       252 -Li~~y~~~-----g~-~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                       .|..=...     |+ . ...--+|++...   -....|----.-+...++-+.|+...++-.+.  .|.   .+..++
T Consensus       266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~ls  340 (660)
T COG5107         266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLS  340 (660)
T ss_pred             hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHH
Confidence             22111111     11 1 111122333222   12333443334455677788888776554322  333   333333


Q ss_pred             HHhhhc-chHHHHHHHHHHHHcCCCCchHHHHHHHHHHH---HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCCh
Q 037256          321 ACTYLG-SRQLGRKFHGYIINSNMKIDATLRNAVMDMYA---KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHG  396 (680)
Q Consensus       321 a~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~  396 (680)
                      -|.... +-+.....|+...+.     ..---+.++.=+   ..|+++.-.+++-.-  ...=...|...+..-.+..-.
T Consensus       341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr--~~k~t~v~C~~~N~v~r~~Gl  413 (660)
T COG5107         341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR--INKLTFVFCVHLNYVLRKRGL  413 (660)
T ss_pred             HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH--HhhhhhHHHHHHHHHHHHhhH
Confidence            343332 222222223222110     000000000000   023443333332221  234456788888888888889


Q ss_pred             HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH-HHHHHHHHhcCCHHHHHHHHH
Q 037256          397 RKALEFFSQMLEEG-VKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY-ACMVDMLGRAGCLYEAFDMIK  474 (680)
Q Consensus       397 ~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~  474 (680)
                      +.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-...  -||...| +..+..+.+.++-+.|..+|+
T Consensus       414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe  490 (660)
T COG5107         414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE  490 (660)
T ss_pred             HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            99999999999998 6678888999887665 57888999999876654  2343333 456677889999999999998


Q ss_pred             hC--CCCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCC
Q 037256          475 QM--PLPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEH  510 (680)
Q Consensus       475 ~m--~~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~  510 (680)
                      ..  .+..+  ...|..+|.-=...     +-..-+++.++-|..
T Consensus       491 tsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         491 TSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            65  22222  34565555443333     222334566677764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.90  E-value=0.72  Score=48.89  Aligned_cols=172  Identities=12%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             HHHHHhCC--CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037256           82 IRAYANNG--HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG  159 (680)
Q Consensus        82 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g  159 (680)
                      -.+|.+-.  .+-+-+.-+++|+++|-.|+..   .+...|+-.|.+.+|.++|.   +.|.+      |.-+.+|....
T Consensus       605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlR  672 (1081)
T KOG1538|consen  605 RKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLR  672 (1081)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHH
Confidence            34454433  2334445566778888778764   34455777888999988874   45543      34456666666


Q ss_pred             ChHHHHHHHhcCCC--------------CChhHHHHHHHHHHhCCCccHHHHHHHH------HHHcCCC---CCHhHHHH
Q 037256          160 QTDDGCKVFDEMSV--------------RDLVSWTVMITAYEQAEKPEEALILFQK------TQQEGLL---SDSVTIVS  216 (680)
Q Consensus       160 ~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~  216 (680)
                      .++.|.++...-..              +|+.--.+....+...|+.++|.++.-+      +.+-+-+   .+..++..
T Consensus       673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~  752 (1081)
T KOG1538|consen  673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL  752 (1081)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence            66666666543321              1111112334445556766666655321      1121212   22333333


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037256          217 VASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK  274 (680)
Q Consensus       217 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~  274 (680)
                      +..-+-+...+..|-++|..+-.         ..+++.+....+++++|..+-++.++
T Consensus       753 ~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  753 CATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             HHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence            33444445555556666654422         13466667777777777777777765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.81  E-value=0.32  Score=42.78  Aligned_cols=70  Identities=16%  Similarity=0.284  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-----CCCcChHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL-----SVKPEVKHY  453 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~  453 (680)
                      ....++..+...|++++|+.+.+++..  ..| |...+..++.++...|+..+|.+.|+.+.+.     |+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            345567778889999999999999998  455 5568999999999999999999999877542     888887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.76  E-value=2.9  Score=37.43  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=20.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256          320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN  368 (680)
Q Consensus       320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~  368 (680)
                      ..+...|....|+.-|+.....-  |+...-.-...++.+.|+.++|..
T Consensus       168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence            34444444444444444444332  222222223344555555554433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.76  E-value=0.27  Score=50.58  Aligned_cols=207  Identities=14%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhhcC--------C
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI----TFTSILSACSHAGLIDEGRKCFADMTKLS--------V  446 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--------~  446 (680)
                      +...|+.+..+|.+.|++++|+..|++.++  +.|+..    +|..+..+|.+.|++++|.+.+++..+.+        .
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~  151 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN  151 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence            577899999999999999999999999999  778854    58999999999999999999999988751        1


Q ss_pred             CcCh------HHHHHHHHHHHhcCCHH-----HHHHHHHhC--CCC-CCHhHHHHHHHHHHHHHHHHHHHH---HccCCC
Q 037256          447 KPEV------KHYACMVDMLGRAGCLY-----EAFDMIKQM--PLP-PNDSVWGALLLACRIHGEIAANYL---FQLEPE  509 (680)
Q Consensus       447 ~p~~------~~~~~li~~~~~~g~~~-----~A~~~~~~m--~~~-p~~~~~~~ll~a~~~~~~~~~~~~---~~l~p~  509 (680)
                      .|+.      .-+..++..+.+.|...     .-.++..+.  |++ .-...|.++..+-..-+...+-++   +.=.++
T Consensus       152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~  231 (453)
T PLN03098        152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDG  231 (453)
T ss_pred             CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            1221      13445555555555422     223333333  111 022345444444333222222221   111111


Q ss_pred             -------------CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-------CCceeEEEECCEEEEEEe-CCCCCc
Q 037256          510 -------------HTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKK-------PAAFSVIEYGKDIQGFHT-ADRVNP  568 (680)
Q Consensus       510 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-------~~~~s~~~~~~~~~~f~~-~~~~~~  568 (680)
                                   +.+....++.+|....+-+++ ++-+..++..+..       ..-++...+.+..+.++. |+.  .
T Consensus       232 ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~--e  308 (453)
T PLN03098        232 APDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK--E  308 (453)
T ss_pred             CccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH--H
Confidence                         123445566666544443333 3333444433211       111222334555565554 433  3


Q ss_pred             ccHHHHHHHHHHHHHHHHcCcc
Q 037256          569 YWKEVYKKVESMAVEIKMAGYM  590 (680)
Q Consensus       569 ~~~~i~~~~~~l~~~m~~~g~~  590 (680)
                      ...+....++.....+.+.|+.
T Consensus       309 ~v~~al~~ae~~r~~L~~r~Vl  330 (453)
T PLN03098        309 SVTLAMQKAERYRTELLKRGVL  330 (453)
T ss_pred             HHHHHHHHhHHHHHHHHHcCcE
Confidence            3556666777777888888754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.69  E-value=1  Score=47.53  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             HHHcCChhHHHHHHHH-HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH
Q 037256          287 YIQNGQASEALLLFDE-MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT  365 (680)
Q Consensus       287 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~  365 (680)
                      ..-.++++++.+..+. -.-..++  ..-...++.-+.+.|-.+.|.++-.         |+   ..-.+...++|+++.
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~  336 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI  336 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence            3445566665554431 1111111  2234555555566666666665532         11   122345567888888


Q ss_pred             HHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC
Q 037256          366 AENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       366 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~  445 (680)
                      |.++-++.    .+...|..|.......|+++-|.+.|.+..+         |..|+--|.-.|+.+.-.++.+.....|
T Consensus       337 A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            88776655    3666888888888888888888888876554         5566666777787777666666665554


Q ss_pred             CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256          446 VKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP  477 (680)
Q Consensus       446 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  477 (680)
                            -++....++.-.|+.++..+++.+.+
T Consensus       404 ------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  404 ------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                  23344444555677777777777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.52  E-value=5.2  Score=46.08  Aligned_cols=91  Identities=24%  Similarity=0.322  Sum_probs=52.1

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHH
Q 037256          355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGLID  432 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~  432 (680)
                      -+|.++|+.++|.+.|..                    .|++.+|+.+..+|..   .-|..  +--.|..-+..+++.-
T Consensus       960 l~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen  960 LMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred             HHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccch
Confidence            356666666666655544                    4677777777666532   11222  1234555666677777


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +|-++..+....   |     .-.+..|+++-.+++|..+....
T Consensus      1017 eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             hHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            776666655432   1     22345566666777777666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=2.2  Score=41.34  Aligned_cols=117  Identities=9%  Similarity=0.036  Sum_probs=82.2

Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHH--HHH-----H
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC--RIH-----G  496 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~--~~~-----~  496 (680)
                      .....|+..++..+|+...... +-+...--.|..+|...|+.++|..++..+|.+-...-|..+..-.  ..+     -
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4566777888888777776652 2224455567778888888888888888887555444554422211  111     1


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      ...++.-+.-+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            234566677899999999999999999999999999888887654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.48  E-value=0.078  Score=40.76  Aligned_cols=59  Identities=14%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhc----C-CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKL----S-VKPE-VKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      +++.+...|...|++++|+..|++..+.    | -.|+ ..++..+...|.+.|++++|++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444555555555555555555554432    1 1121 34556666677777777777776654

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.47  E-value=0.18  Score=37.99  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          388 AGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       388 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..|.+.+++++|++.++++..  +.|+.. .+......+...|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            456777888888888888877  455543 5555666777788888888888777765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.33  E-value=6.5  Score=39.57  Aligned_cols=266  Identities=16%  Similarity=0.154  Sum_probs=156.9

Q ss_pred             CCHhHHHHHHHHHh--ccCChHHHHHHHHHHHHccCCCChhH--HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH
Q 037256          209 SDSVTIVSVASAVG--QLGDVLKAQAVHGYAICNAFLEDLCI--QNSIVAMYARCGNVEKARLVFDMMEKR---DLISWN  281 (680)
Q Consensus       209 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~  281 (680)
                      .|...+..++.+-.  -.|+.+.+++-|+.|...   |....  ...|.----+.|..+.|...-+..-..   -...|.
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~  192 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR  192 (531)
T ss_pred             ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence            34444444444332  336666666666665431   11111  112222233567777777666655432   345678


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHhh---hcchHHHHHHHHHHHHcCCCCchHHH-HHHH
Q 037256          282 SMLTGYIQNGQASEALLLFDEMQNSD-CKPNPV--TALILVSACTY---LGSRQLGRKFHGYIINSNMKIDATLR-NAVM  354 (680)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g~~~~a~~i~~~~~~~~~~~~~~~~-~~li  354 (680)
                      +.+...+..|+|+.|+++++.-+... +.++..  .-..|+.+-+.   ..+...|+..-.+..|.  .||..-. -.-.
T Consensus       193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AA  270 (531)
T COG3898         193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHH
Confidence            88888899999999999888765432 344432  22233333221   12344555555444443  3332211 2234


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHccCCHH
Q 037256          355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLE-EGVKPDHI-TFTSILSACSHAGLID  432 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~~g~~~  432 (680)
                      .+|.+.|++.++-.+++.+=+.+|.+..|...+  +++.|+  .++.-+++... ..++||.. +-..+..+-...|++.
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~  346 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS  346 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence            778999999999999999855567666654333  334444  44444444432 12778764 6777778888889998


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHhHH
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQMPLPPNDSVW  485 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~  485 (680)
                      .|..--+...+  ..|....|..|.+.-... |+-.++..++-+.--.|-...|
T Consensus       347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW  398 (531)
T COG3898         347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW  398 (531)
T ss_pred             HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence            88776665554  478888898888876655 9999999998776223333334

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.28  E-value=0.11  Score=39.81  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEE--GVK---PD-HITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      .+|+.+...|...|++++|+..|++..+.  ...   |+ ..++..+...+...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35666777777777777777777766642  122   22 23667777778888888888888877653

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.23  E-value=1.1  Score=48.11  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHhhcCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHccCCHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSERNVSSWNVLIA-GYGMHGHGRKALEFFSQMLEEG--V-KPDHITFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~  435 (680)
                      ....+.|.++++.+...-|+...|.-.-. .+...|+.++|++.|++.....  . +.....+--+...+....++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            45778899999988666788777755543 4567889999999998765411  1 112234555566777889999999


Q ss_pred             HHHHHhhhc-CCCcChHHHHHHHHHHHhcCCH-------HHHHHHHHhCC
Q 037256          436 KCFADMTKL-SVKPEVKHYACMVDMLGRAGCL-------YEAFDMIKQMP  477 (680)
Q Consensus       436 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~  477 (680)
                      +.|..+.+. ...+...+|-. .-++...|+.       ++|.++|.+.|
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            999999886 33333333322 2345567777       77888887763

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.09  E-value=2.5  Score=36.78  Aligned_cols=122  Identities=18%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLI  431 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  431 (680)
                      ++..+.+.+........++.+... ..+....|.++..|++.+ ..+.++.++.      .++......++..|.+.+.+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~   85 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY   85 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence            344444444455555555444222 223344555555555442 2233333331      23344455566777777777


Q ss_pred             HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 037256          432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQMPLPPNDSVWGALLLACR  493 (680)
Q Consensus       432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~  493 (680)
                      +++..++.++..         |...++.+... ++++.|.+++.+-.   +...|..++..|.
T Consensus        86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l  136 (140)
T smart00299       86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            777777766532         12233333333 77777777777632   5556766665553

>PRK15331 chaperone protein SicA; Provisional

Probab=94.02  E-value=0.61  Score=41.09  Aligned_cols=39  Identities=10%  Similarity=-0.034  Sum_probs=34.0

Q ss_pred             HHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          501 NYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       501 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      .....++++||..+...+..|...|+.+.|...|+...+
T Consensus        95 ~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         95 AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            344457788999999999999999999999999998876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=11  Score=42.04  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=28.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFAD  440 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  440 (680)
                      ++..+.+..+.++++.+.+..-..    ++.-|..+|+.+.+.+.++...++..+
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~  761 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYK  761 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence            344455556666666655544332    555666677777766655554444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.67  E-value=3.2  Score=43.85  Aligned_cols=103  Identities=14%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                      +...++|+++.|.++.++..  +...|..|.....++|+++-|.+.|.+...         +..++-.+...|+.+.-.+
T Consensus       326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k  394 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK  394 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence            44456677777776655444  455777777777777777777777765542         3444445555666665555


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      +.......|-      +|....++.-.|++++..+++.+.
T Consensus       395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5555554441      233334444456666666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.59  E-value=0.73  Score=44.07  Aligned_cols=95  Identities=13%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHhCCCC-CC-c
Q 037256           37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS----FLWNTMIRAYANNGHCVETLELYSTMRRSGIS-SN-S  110 (680)
Q Consensus        37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~  110 (680)
                      .|+.-++.|-.        |++..|...|.......|+.    -++-.|...+...|++++|...|..+.+.-++ |- +
T Consensus       144 ~Y~~A~~~~ks--------gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         144 LYNAALDLYKS--------GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence            57877887777        99999999999888887742    35677889999999999999999988764322 21 2


Q ss_pred             ccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 037256          111 YTFPFVLKACASNSLILEGKVVHGDIIRT  139 (680)
Q Consensus       111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  139 (680)
                      .++.-|.....+.|+.++|...++++++.
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            45666667778889999999999998886

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.57  E-value=4.1  Score=35.37  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccH
Q 037256          115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEE  194 (680)
Q Consensus       115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~  194 (680)
                      .++..+...+........++.+++.+ ..++..+|.++..|++.. .++....+..  ..+......+++.+.+.+.+++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~   87 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE   87 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence            34444444445555555555555554 244555666666665542 2223333331  1122233334444444455555


Q ss_pred             HHHHHHH
Q 037256          195 ALILFQK  201 (680)
Q Consensus       195 A~~~~~~  201 (680)
                      +..++.+
T Consensus        88 ~~~l~~k   94 (140)
T smart00299       88 AVELYKK   94 (140)
T ss_pred             HHHHHHh
Confidence            5444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.46  E-value=8.1  Score=39.50  Aligned_cols=72  Identities=15%  Similarity=0.070  Sum_probs=48.9

Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCCC---C----hhHHHHHHHHHHh---CCCccHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 037256          150 ALVDMYAKCGQTDDGCKVFDEMSVR---D----LVSWTVMITAYEQ---AEKPEEALILFQKTQQEGLLSDSVTIVSVAS  219 (680)
Q Consensus       150 ~Li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  219 (680)
                      .|+-.|....+++.-.++.+.+...   +    ...--...-++-+   .|+.++|++++..+....-.++..||..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444587888888888888887643   1    1112233445555   7888999999888766666777888877766


Q ss_pred             HH
Q 037256          220 AV  221 (680)
Q Consensus       220 ~~  221 (680)
                      .+
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            55

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.19  E-value=0.43  Score=45.39  Aligned_cols=102  Identities=11%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             HHHHHHhhhccCCCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC---------
Q 037256           59 NTARSLFNSIHNDKSYSFLWNTMIRAYANN-----GHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS---------  124 (680)
Q Consensus        59 ~~A~~~f~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------  124 (680)
                      -.-++.|..++..+-|-.+|-+.+..+...     +..+=-...++.|.+.|+.-|..+|+.||+.+-+..         
T Consensus        51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~  130 (406)
T KOG3941|consen   51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK  130 (406)
T ss_pred             cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence            344566766662222667787777777543     445555667788999999999999999998875533         


Q ss_pred             -------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037256          125 -------LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQ  160 (680)
Q Consensus       125 -------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~  160 (680)
                             .-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus       131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                   223456777788888888888777777777766553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.13  E-value=1.2  Score=45.03  Aligned_cols=119  Identities=13%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256          253 VAMYARCGNVEKARLVFDMMEK------------------RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT  314 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  314 (680)
                      .+.|.+.|++..|..-|++...                  .-..+++.+..+|.+.+++.+|++.-.+.++.+ ++|.-.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            3567788888888777776431                  123456677778888888888888888887765 566666


Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH-HHHHhhc
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA-ENMFNDI  373 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~f~~~  373 (680)
                      +..=..++...|+++.|+..|+.+++.. +.|..+-+.|+.+-.+..+..+. .++|..|
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777777777777777776654 33444555555554444443332 4455555

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.06  E-value=6.5  Score=37.47  Aligned_cols=79  Identities=20%  Similarity=0.229  Sum_probs=54.9

Q ss_pred             hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-Ccch---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256           35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFL---WNTMIRAYANNGHCVETLELYSTMRRSGISSNS  110 (680)
Q Consensus        35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  110 (680)
                      ..+|+.-++-+.+        |++++|.+.|+.+..+.| +..+   --.++-++-+.+++++|+..+++..+.-+.-..
T Consensus        35 ~~LY~~g~~~L~~--------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          35 SELYNEGLTELQK--------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            3556666666666        999999999999988877 3333   334556677889999999999888775444344


Q ss_pred             ccHHHHHHHHh
Q 037256          111 YTFPFVLKACA  121 (680)
Q Consensus       111 ~t~~~ll~~~~  121 (680)
                      ..|..-|.+.+
T Consensus       107 ~dY~~YlkgLs  117 (254)
T COG4105         107 ADYAYYLKGLS  117 (254)
T ss_pred             hhHHHHHHHHH
Confidence            55666666655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.66  E-value=0.84  Score=43.66  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             ccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIHGEIAANYL  503 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~~~~  503 (680)
                      ..|++..|.+.|..-++.  +-.-....+-.|...+...|++++|...|..+ .--|                       
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-----------------------  209 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-----------------------  209 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-----------------------
Confidence            344555555555555554  11122223334556666666666666555544 1111                       


Q ss_pred             HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                        ..|.-|+.+.-|+....+.|+.++|..++++..++
T Consensus       210 --~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         210 --KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             --CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              13444556666666666666666766666666553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.54  E-value=12  Score=37.07  Aligned_cols=158  Identities=9%  Similarity=0.001  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhhcch---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHH
Q 037256          315 ALILVSACTYLGSR---QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGY  390 (680)
Q Consensus       315 ~~~ll~a~~~~g~~---~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~  390 (680)
                      +..+..++...+..   ++|..+.+.+.+. .+..+.++-.-+..+.+.++.+.+.+++.+|..... ....+..++..+
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i  165 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI  165 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            34444555444433   3344444444322 222344444455666667777777777777744322 334455555444


Q ss_pred             ---HhcCChHHHHHHHHHHHHcCCCCCHH-H----HHHHHHHHHccC------CHHHHHHHHHHhhhc-CCCcChHHHHH
Q 037256          391 ---GMHGHGRKALEFFSQMLEEGVKPDHI-T----FTSILSACSHAG------LIDEGRKCFADMTKL-SVKPEVKHYAC  455 (680)
Q Consensus       391 ---~~~g~~~~A~~l~~~m~~~g~~p~~~-t----~~~ll~a~~~~g------~~~~a~~~~~~m~~~-~~~p~~~~~~~  455 (680)
                         .. .....|...++.+....+.|... .    +...+-...+.+      .++...++++...+. +.+.+..+-.+
T Consensus       166 ~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a  244 (278)
T PF08631_consen  166 KQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA  244 (278)
T ss_pred             HHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence               33 23456666776666655555542 1    111111122221      245555566644443 44444444333


Q ss_pred             HH-------HHHHhcCCHHHHHHHHH
Q 037256          456 MV-------DMLGRAGCLYEAFDMIK  474 (680)
Q Consensus       456 li-------~~~~~~g~~~~A~~~~~  474 (680)
                      +.       ....+.+++++|.++++
T Consensus       245 ~~~LLW~~~~~~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  245 IHTLLWNKGKKHYKAKNYDEAIEWYE  270 (278)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            33       33456788899988886

It is also involved in sporulation [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.33  E-value=21  Score=39.36  Aligned_cols=114  Identities=11%  Similarity=0.071  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 037256          413 PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC  492 (680)
Q Consensus       413 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~  492 (680)
                      -..-|.+--+.-+...|+..+|.++-.+.+    .||...|-.-+.+++..+++++-+++-+++.   .+..|.-+..+|
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c  754 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC  754 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence            334456666777888888888888877665    6888888888899999999999888887763   245566677778


Q ss_pred             HHHHH-HHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256          493 RIHGE-IAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       493 ~~~~~-~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      .+.+. ..+.+.+-.-++.+    -...+|.+.|++.+|.+.--+-
T Consensus       755 ~~~~n~~EA~KYiprv~~l~----ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVGGLQ----EKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HhcccHHHHhhhhhccCChH----HHHHHHHHhccHHHHHHHHHHh
Confidence            77632 22333333333322    5778899999999988875543

>PRK11906 transcriptional regulator; Provisional

Probab=92.33  E-value=3  Score=43.35  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=20.6

Q ss_pred             HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+|.++-++..+.+ +-|......+..++.-.|+++.|..+|++.
T Consensus       321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA  364 (458)
T PRK11906        321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA  364 (458)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            34444444444433 334444444444444455555555555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=1.7  Score=42.00  Aligned_cols=119  Identities=8%  Similarity=0.009  Sum_probs=50.2

Q ss_pred             HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCh
Q 037256           85 YANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC---GQT  161 (680)
Q Consensus        85 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~---g~~  161 (680)
                      ....|++.+|..+|......... +...-..+..++...|+.+.|..+++.+...--........+-|..+.+.   ++.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            34445555555555555443222 23334444445555555555555555443221111111111122222222   222


Q ss_pred             HHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc
Q 037256          162 DDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE  205 (680)
Q Consensus       162 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  205 (680)
                      ....+.+..-+ .|...--.+...+...|+.++|++.+-.+...
T Consensus       223 ~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         223 QDLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            23222222211 13444445556666666666666665555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=2.7  Score=42.60  Aligned_cols=59  Identities=14%  Similarity=-0.001  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ++..+..+|.+.+.+.+|++.-+.....+ ++|+...-.=..+|...|.++.|+..|+++
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            45666667788888888888888877765 556655555567777778888887777765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.11  E-value=1.8  Score=39.42  Aligned_cols=93  Identities=17%  Similarity=0.120  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhhc---CCCcCh----HH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGLIDEGRKCFADMTKL---SVKPEV----KH  452 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~p~~----~~  452 (680)
                      .+..+..-|.+.|+.++|++.|.++.+....|...  .+..++..+...+++..+.....+....   |-.++.    ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            45566667777777777777777777665555543  4566677777777777777776666554   111221    22


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          453 YACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       453 ~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      |..+.  +...|++.+|-+.|-..
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHcc
Confidence            22222  23467888888887766

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.10  E-value=19  Score=38.55  Aligned_cols=143  Identities=6%  Similarity=0.049  Sum_probs=94.3

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSF-LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      +-..|+.||.--.. .      ..++.++.+++.+..+.|... -|-....-=.+.|..+.+.++|++-.. |++.+...
T Consensus        44 ~f~~wt~li~~~~~-~------~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~Svdl  115 (577)
T KOG1258|consen   44 DFDAWTTLIQENDS-I------EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDL  115 (577)
T ss_pred             cccchHHHHhccCc-h------hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHH
Confidence            44556666643333 3      556778888888888877654 466666666778889999999998876 35556666


Q ss_pred             HHHHHHHHh-ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHH
Q 037256          113 FPFVLKACA-SNSLILEGKVVHGDIIRT-GFL-SDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMIT  184 (680)
Q Consensus       113 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~  184 (680)
                      |...+..+. ..++.+..+..|+..+.. |.. .....|-..|..-..+++......+++++.+--...++..-.
T Consensus       116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~  190 (577)
T KOG1258|consen  116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFD  190 (577)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence            666665544 456777788888877664 322 234456667766677788888888888876544444444333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.08  E-value=11  Score=35.59  Aligned_cols=44  Identities=20%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQ  304 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (680)
                      ++--..+|..+|..+.|-..+++.-+            ...+.++++|+++|++..
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral  137 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL  137 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence            34445566777766666555544321            223445666666665543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.06  E-value=20  Score=38.54  Aligned_cols=158  Identities=13%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHHhc----cCChHHHHHHHHHHHHccCCCChhH
Q 037256          179 WTVMITAYEQAEKPEEALILFQKTQQEG-LLSDS-----VTIVSVASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCI  248 (680)
Q Consensus       179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  248 (680)
                      ...+++...=.|+-+.+++++.+-.+.+ +.-..     -+|..++..+..    ..+.+.+.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            3344455555677777777776654422 22111     123333333322    34566777777777665  344433


Q ss_pred             HH-HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          249 QN-SIVAMYARCGNVEKARLVFDMMEKR-------DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       249 ~~-~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                      |. .-...+...|++++|.+.|+.....       ....+--+...+.-..+|++|.+.|.++.+.. .....+|.-+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            33 2345667778888888888865431       22334445566777788888888888887653 333344444433


Q ss_pred             HH-hhhcch-------HHHHHHHHHHH
Q 037256          321 AC-TYLGSR-------QLGRKFHGYII  339 (680)
Q Consensus       321 a~-~~~g~~-------~~a~~i~~~~~  339 (680)
                      +| ...++.       ++|.+++..+.
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            33 334555       56666665553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.96  E-value=23  Score=39.17  Aligned_cols=321  Identities=10%  Similarity=0.101  Sum_probs=153.0

Q ss_pred             ccCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHH
Q 037256          122 SNSLILEGKVVHGDIIRTGFLS---DSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALIL  198 (680)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  198 (680)
                      +.+.+++|..+-....  |..+   -..++..+|+.+.-.|++++|-...-.|...+..-|--.+..+...++......+
T Consensus       368 ~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~  445 (846)
T KOG2066|consen  368 EKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY  445 (846)
T ss_pred             HhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence            3444555554433222  3333   3457788888898999999999999999888888898888888888776543332


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037256          199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLI  278 (680)
Q Consensus       199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~  278 (680)
                         +.......+...|..+|-.+.. .   ....+++...+.  +++...-...++         ....-+++-.++ ..
T Consensus       446 ---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W--p~~Lys~l~iis---------a~~~q~~q~Se~-~~  506 (846)
T KOG2066|consen  446 ---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW--PGHLYSVLTIIS---------ATEPQIKQNSES-TA  506 (846)
T ss_pred             ---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC--ChhhhhhhHHHh---------hcchHHHhhccc-hh
Confidence               2221112344556666666654 1   122222222211  111111111111         111111111111 11


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHH-HHHHHHHHcCCCCchHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR-KFHGYIINSNMKIDATLRNAVMDMY  357 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y  357 (680)
                      .-..|...|...+++.+|++++-..+.    ++.+++  +.    +..-++... ++...|.   +..+     ..++++
T Consensus       507 L~e~La~LYl~d~~Y~~Al~~ylklk~----~~vf~l--I~----k~nL~d~i~~~Iv~Lml---l~sk-----ka~~lL  568 (846)
T KOG2066|consen  507 LLEVLAHLYLYDNKYEKALPIYLKLQD----KDVFDL--IK----KHNLFDQIKDQIVLLML---LDSK-----KAIDLL  568 (846)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHhccC----hHHHHH--HH----HHhhHHHHHHHHHHHHc---cchh-----hHHHHH
Confidence            222366777777777777777665542    222211  11    001111111 1111110   0000     122222


Q ss_pred             HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-----C-ChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH
Q 037256          358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH-----G-HGRKALEFFSQMLEEGVKP-----DHITFTSILSACS  426 (680)
Q Consensus       358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g-~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~  426 (680)
                      ....+.-.-.++++++.   .++...+..+..+...     + -.+..++++.+.....+-|     ........+..|.
T Consensus       569 ldn~d~ip~a~Vveql~---~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~  645 (846)
T KOG2066|consen  569 LDNRDSISPSEVVEQLE---DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICS  645 (846)
T ss_pred             hhccccCCHHHHHHHHh---cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHH
Confidence            22222222333343332   1111111111111111     1 1345666666665544333     2223445566666


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH  495 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~  495 (680)
                      +.|-+++-.-++.+|-.        ++.+|.-.--+.++.++|.++.++   +.|...|..||+-+..+
T Consensus       646 q~~~~~E~VYlLgrmGn--------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldk  703 (846)
T KOG2066|consen  646 QKNFYEELVYLLGRMGN--------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDK  703 (846)
T ss_pred             hhCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcC
Confidence            66666666666666531        333343344455667777776655   45888999999887644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.87  E-value=11  Score=35.15  Aligned_cols=61  Identities=13%  Similarity=0.022  Sum_probs=32.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256          246 LCIQNSIVAMYARCGNVEKARLVFDMMEK-----RDLISWNSMLTGYIQNGQASEALLLFDEMQNS  306 (680)
Q Consensus       246 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (680)
                      ..........+...+.+..+...+.....     .....+......+...+++.++.+.+......
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL  124 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence            34445555556666666666555555431     23344444555555555666666666665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.71  E-value=5.6  Score=39.58  Aligned_cols=92  Identities=13%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             HHHHHHHhhcCCCC-----CCHhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC--
Q 037256          364 DTAENMFNDIHPSE-----RNVSSWNVLIAGYGMHGH----GRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGL--  430 (680)
Q Consensus       364 ~~A~~~f~~~~~~~-----~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--  430 (680)
                      ..|..+|+.|.+..     ++...+.+|+..  ..++    .+++..+|+.+.+.|+..+..  ....+|..+.....  
T Consensus       120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~  197 (297)
T PF13170_consen  120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK  197 (297)
T ss_pred             HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence            34555555554332     233445555443  2222    345667777787777776543  33333333322222  


Q ss_pred             HHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256          431 IDEGRKCFADMTKLSVKPEVKHYACMV  457 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~~~~~~~li  457 (680)
                      +..+.++++.+.+.|+++...+|..+.
T Consensus       198 v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  198 VARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHcCCccccccccHHH
Confidence            446778888888888888888876654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.50  E-value=0.89  Score=37.97  Aligned_cols=89  Identities=13%  Similarity=0.001  Sum_probs=55.1

Q ss_pred             cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcc---cHHHHHHHHhccCC
Q 037256           51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRS-GISSNSY---TFPFVLKACASNSL  125 (680)
Q Consensus        51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~~~  125 (680)
                      ++++.|+++.|++.|.+....-| +...||.-..++.-+|+.++|++-+++..+. |.+ ...   .|..--..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence            34445888888888877766555 5667888888888888888888877777653 222 111   12222223445566


Q ss_pred             hHHHHHHHHHHHHhC
Q 037256          126 ILEGKVVHGDIIRTG  140 (680)
Q Consensus       126 ~~~a~~~~~~~~~~g  140 (680)
                      .+.|+.=|+...+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            666666666665555

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.36  E-value=0.87  Score=44.55  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256          388 AGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       388 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  466 (680)
                      .-|.+.|.+++|+..|..-..  +.| |.+++..-..+|.+...+..|..-....+..+        ...+.+|+|.|.-
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA  174 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence            346677888888888877666  566 77777777778887777776666555554321        2456677776655


Q ss_pred             HHHHHHHHh
Q 037256          467 YEAFDMIKQ  475 (680)
Q Consensus       467 ~~A~~~~~~  475 (680)
                      .+++..+.+
T Consensus       175 R~~Lg~~~E  183 (536)
T KOG4648|consen  175 RESLGNNME  183 (536)
T ss_pred             HHHHhhHHH
Confidence            555444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.89  E-value=0.92  Score=44.10  Aligned_cols=78  Identities=10%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHh-----CCCCC
Q 037256           35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRR-----SGISS  108 (680)
Q Consensus        35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p  108 (680)
                      .-+...++..|.. |      |+.+.+...+++.....| |-..|..++.+|.+.|+...|+..|+++.+     .|+.|
T Consensus       153 ~~~l~~lae~~~~-~------~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P  225 (280)
T COG3629         153 IKALTKLAEALIA-C------GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHHh-c------ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence            3456778888888 8      899999999998888877 778899999999999999999999888754     46666


Q ss_pred             CcccHHHHHHH
Q 037256          109 NSYTFPFVLKA  119 (680)
Q Consensus       109 ~~~t~~~ll~~  119 (680)
                      ...+......+
T Consensus       226 ~~~~~~~y~~~  236 (280)
T COG3629         226 APELRALYEEI  236 (280)
T ss_pred             cHHHHHHHHHH
Confidence            65554444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.88  E-value=0.44  Score=30.12  Aligned_cols=26  Identities=12%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256          513 YFVLMSNIYAASNKWREVGKLREDMK  538 (680)
Q Consensus       513 ~~~~l~~~~~~~g~~~~A~~~~~~m~  538 (680)
                      ++..|+++|.+.|+|++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999954

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.63  E-value=32  Score=38.37  Aligned_cols=70  Identities=27%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCh-------HHHHHHHHHHHHhCCCCchh
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI-------LEGKVVHGDIIRTGFLSDSY  146 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~  146 (680)
                      ...| ++|-.+.|.|.+++|.++..+.... .......|...+..+....+-       +....-+.+.++.....|++
T Consensus       112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy  188 (613)
T PF04097_consen  112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY  188 (613)
T ss_dssp             EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred             CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence            3455 5777889999999999999665543 455667788889988765332       34445555555544333554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.56  E-value=3.7  Score=40.32  Aligned_cols=152  Identities=18%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             hCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCChHH
Q 037256           87 NNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRT---GFLSDSYVQAALVDMYAKCGQTDD  163 (680)
Q Consensus        87 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~~~~~g~~~~  163 (680)
                      -+|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-+..++.++..   +++-..++...+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            467778888888888765 3447777777777888888888888888777654   222122333333344557888888


Q ss_pred             HHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhccCChHHHHHHHHHH
Q 037256          164 GCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQE---GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA  237 (680)
Q Consensus       164 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  237 (680)
                      |++.-++..+-   |..+-.+....+--+|+..++.++..+-...   +-..-...|-...-.+...+.++.|+++|+.-
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence            88888876654   3344456666677788888888876553221   10111122333344455568888888888765


Q ss_pred             HH
Q 037256          238 IC  239 (680)
Q Consensus       238 ~~  239 (680)
                      +-
T Consensus       274 i~  275 (491)
T KOG2610|consen  274 IW  275 (491)
T ss_pred             HH
Confidence            43

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=16  Score=34.54  Aligned_cols=25  Identities=4%  Similarity=-0.000  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHH
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQ  304 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~  304 (680)
                      |.--..+|-...++++|...+.+..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4444455666666666666555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.12  E-value=5.1  Score=35.29  Aligned_cols=121  Identities=12%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHH-HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 037256           37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNT-MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPF  115 (680)
Q Consensus        37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  115 (680)
                      +.+.|+..... .   .+.++.+++..+++.+.-.+|....... -...+.+.|++.+|+.+|+++.+.+  |....-..
T Consensus         9 iv~gLie~~~~-a---l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kA   82 (160)
T PF09613_consen    9 IVGGLIEVLSV-A---LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKA   82 (160)
T ss_pred             HHHHHHHHHHH-H---HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHH
Confidence            34455555443 2   3338999999999998877775443322 2334678899999999999987653  33333344


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 037256          116 VLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCK  166 (680)
Q Consensus       116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~  166 (680)
                      |+..|.....-..=+..-++++..+-.|+.   ..|+..+....+...|..
T Consensus        83 LlA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   83 LLALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence            444444333323333333445555533433   234444444444444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.97  E-value=2.3  Score=41.40  Aligned_cols=78  Identities=13%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE-----EGVKPDHITFTS  420 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~  420 (680)
                      ..++..++..+..+|+.+.+.+.++++....| +...|..+|.+|.+.|+...|+..|+++..     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34566778888888888888888888855544 677888899999999998888888888765     467776666555


Q ss_pred             HHHH
Q 037256          421 ILSA  424 (680)
Q Consensus       421 ll~a  424 (680)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.80  E-value=3.3  Score=40.68  Aligned_cols=154  Identities=11%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH----HHHHHHHHhcCCHH
Q 037256          392 MHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY----ACMVDMLGRAGCLY  467 (680)
Q Consensus       392 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~  467 (680)
                      -.|+..+|-..++++.+. .+-|...+.-.=.+|...|+.+.-...++++... ..|+...|    ..+.-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            478888999999999885 5556678887888999999999999999888764 13444333    34445566899999


Q ss_pred             HHHHHHHhC-CCCCCHhHHHH--HHHHHHHHHH-HHHHHHHccCCCC--------CchHHHHHHHHHhcCChhHHHHHHH
Q 037256          468 EAFDMIKQM-PLPPNDSVWGA--LLLACRIHGE-IAANYLFQLEPEH--------TGYFVLMSNIYAASNKWREVGKLRE  535 (680)
Q Consensus       468 ~A~~~~~~m-~~~p~~~~~~~--ll~a~~~~~~-~~~~~~~~l~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~  535 (680)
                      +|++.-++. .+.|.. .|.+  +-...-..|+ +...++.+...++        .-.|-..+-.|...+.++.|+++++
T Consensus       193 dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            999999886 555432 2322  2211111111 1112222211111        1223345555677799999999999


Q ss_pred             HHHhCCCCCCCce
Q 037256          536 DMKNKGLKKPAAF  548 (680)
Q Consensus       536 ~m~~~g~~~~~~~  548 (680)
                      .=.-+.+.++.+.
T Consensus       272 ~ei~k~l~k~Da~  284 (491)
T KOG2610|consen  272 REIWKRLEKDDAV  284 (491)
T ss_pred             HHHHHHhhccchh
Confidence            8766666666553

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.78  E-value=11  Score=31.80  Aligned_cols=63  Identities=13%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM  343 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~  343 (680)
                      .+.-+.....+|+-+.-.++++++.+.+ .+++.....+..||.+.|+..++.+++..+-+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3445666777777777777777776533 66777777777778888877777777777766664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.73  E-value=4.4  Score=34.97  Aligned_cols=67  Identities=12%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CChHHHHHHhhhccCCCC-Cc---chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037256           56 GEPNTARSLFNSIHNDKS-YS---FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS  122 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  122 (680)
                      |++++|.+.|+.+..+.| +.   .+--.++.+|.+++++++|+..+++.++..+.--..-|...+.+++.
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            999999999999988866 32   24456788899999999999999999887655445567777766554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.66  E-value=33  Score=36.92  Aligned_cols=406  Identities=9%  Similarity=0.018  Sum_probs=201.0

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT-FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALV  152 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li  152 (680)
                      +...|+.+|..--+....+.+...+..++..  .|..+- |.....-=.+.|..+.+..+|++-+. |++.+...|...+
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence            5567888887665555566677777777754  344332 22222223467888889999998876 4566777777766


Q ss_pred             HHHH-hcCChHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHH---h
Q 037256          153 DMYA-KCGQTDDGCKVFDEMSV------RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAV---G  222 (680)
Q Consensus       153 ~~~~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~  222 (680)
                      .... ..|+.+..++.|+....      .....|...|.--..++++.....+|++.++...    .-|+....-+   .
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l  196 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLL  196 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHH
Confidence            6554 45677777777876543      3556788888888888889999999998876421    1111111111   1


Q ss_pred             cc------CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhH
Q 037256          223 QL------GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARC-GNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASE  295 (680)
Q Consensus       223 ~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~  295 (680)
                      +.      ...++..++-.......             .-... ...+.-....+....+.              +..++
T Consensus       197 ~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~  249 (577)
T KOG1258|consen  197 NQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTE  249 (577)
T ss_pred             hcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhH
Confidence            11      11111111111111000             00000 00111111111111110              00111


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256          296 ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-------NMKIDATLRNAVMDMYAKCGDLDTAEN  368 (680)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~y~k~g~~~~A~~  368 (680)
                      +.....+...           .--.++...-.....+..++.-++.       -..++..+|...++.-.+.|+.+.+.-
T Consensus       250 ~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~  318 (577)
T KOG1258|consen  250 EKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI  318 (577)
T ss_pred             HHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence            1110000000           0000000111111111222222221       112345667777777778888888888


Q ss_pred             HHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC
Q 037256          369 MFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVK  447 (680)
Q Consensus       369 ~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~  447 (680)
                      .|++..-+ ..=...|--.+.-.-..|+.+-|..++....+--++-...+-..-..-+-..|+++.|..+++...+.-  
T Consensus       319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--  396 (577)
T KOG1258|consen  319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--  396 (577)
T ss_pred             HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--
Confidence            88877211 111234444444444447777777666665553222222222111223456778888888888887752  


Q ss_pred             cCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHhHHHHHHHHHH-------HH---HHHHHHHHHccCCCCCc
Q 037256          448 PEV-KHYACMVDMLGRAGCLYEAF---DMIKQM-PLPPNDSVWGALLLACR-------IH---GEIAANYLFQLEPEHTG  512 (680)
Q Consensus       448 p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~a~~-------~~---~~~~~~~~~~l~p~~~~  512 (680)
                      |+. ..-..-+....|.|..+.+.   +++... +.+-+......+.--+.       ..   |...+.++.+..|++..
T Consensus       397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~  476 (577)
T KOG1258|consen  397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV  476 (577)
T ss_pred             CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence            332 22223345566777777776   444443 22222222222222221       11   45556677778888888


Q ss_pred             hHHHHHHHHHhcCC
Q 037256          513 YFVLMSNIYAASNK  526 (680)
Q Consensus       513 ~~~~l~~~~~~~g~  526 (680)
                      .|..+.+.....+.
T Consensus       477 ~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  477 LYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHHHHHHhCCc
Confidence            88888877665553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.49  E-value=15  Score=32.82  Aligned_cols=133  Identities=11%  Similarity=0.060  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcC
Q 037256          196 LILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG--NVEKARLVFDMME  273 (680)
Q Consensus       196 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~m~  273 (680)
                      ++..+.+.+.+++|+...+..++..+.+.|.+..-.+    ++..++-+|.......+-.+....  -..-|.+.+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            3556666677888888888888888888887654433    344444444443333322222111  1233344444433


Q ss_pred             CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256          274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN  340 (680)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~  340 (680)
                          ..+..++..+...|++-+|+++.++....    +......++.+..+.++...--.+++....
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                24566777888999999999888775322    222334556666666666555555555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.13  E-value=21  Score=35.78  Aligned_cols=164  Identities=9%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCC---HhhHHHHHHHHhhhcchHHHHHHHHHHHHcC-----CCCchHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQN-SDCKPN---PVTALILVSACTYLGSRQLGRKFHGYIINSN-----MKIDATL  349 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~-----~~~~~~~  349 (680)
                      +|-.+..++-+.-++.+++.+-..-.. .|..|.   .....++-.++...+.++++.+.|+...+.-     -.....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            444455555555555555554433221 122221   1233446667777888888888888776532     1234567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCC----C-CCHh------HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPS----E-RNVS------SWNVLIAGYGMHGHGRKALEFFSQMLE----EGVKPD  414 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~----~-~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~  414 (680)
                      +.+|...|.+..++++|.-...+..+.    . .|..      +.-.|..++...|....|.+.-++..+    .|-+|-
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            888888898888888876555443111    1 2221      223455567777887777777766543    343333


Q ss_pred             H-HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          415 H-ITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       415 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      . .....+.+.|-..|+.+.|+.-++...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2 244556667777888888777766544

>PRK11906 transcriptional regulator; Provisional

Probab=89.03  E-value=24  Score=36.88  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 037256          363 LDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFAD  440 (680)
Q Consensus       363 ~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~  440 (680)
                      ..+|.+.-++..+. ..|......+..+....++++.|..+|++...  +.||.. +|......+...|+.++|.+.+++
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455555555333 33556666666666666778888888888777  677764 555555556667888888888877


Q ss_pred             hhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          441 MTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       441 m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      ..+. ....-.......++.|... .+++|..++-+
T Consensus       398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            6554 2222233333445566544 45666666543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.74  E-value=33  Score=36.12  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=32.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          385 VLIAGYGMHGHGRKALEFFSQMLEEGVKP-D-HITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       385 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      .+..+.-+.|+.++|++.|++|.+.. ++ | ....-.|+.++...+.+.++..++.+--
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            34445556667777777776666532 12 1 1244556666666666666666666643

The molecular function of this protein is uncertain.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.64  E-value=14  Score=31.30  Aligned_cols=83  Identities=10%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA  439 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  439 (680)
                      ||++......+-.+   ..+....+.-+......|+-++-.+++.++... -+|++.....+..||.+.|+..++.+++.
T Consensus        69 C~NlKrVi~C~~~~---n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~  144 (161)
T PF09205_consen   69 CGNLKRVIECYAKR---NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK  144 (161)
T ss_dssp             -S-THHHHHHHHHT---T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hcchHHHHHHHHHh---cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            44444444444333   223333445566666777777777777776642 46666777777777888888777777777


Q ss_pred             HhhhcCC
Q 037256          440 DMTKLSV  446 (680)
Q Consensus       440 ~m~~~~~  446 (680)
                      +.-+.|+
T Consensus       145 ~ACekG~  151 (161)
T PF09205_consen  145 EACEKGL  151 (161)
T ss_dssp             HHHHTT-
T ss_pred             HHHHhch
Confidence            7777664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.59  E-value=47  Score=37.29  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 037256           85 YANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDG  164 (680)
Q Consensus        85 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A  164 (680)
                      +.+.|++++|..-|-+-... +.|     ..+++-+.....+.+-..+++.+.+.|+.. ...-+.|+.+|.+.++.+.-
T Consensus       378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL  450 (933)
T KOG2114|consen  378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKL  450 (933)
T ss_pred             HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHH
Confidence            44567777777777655432 222     234455555555555666677777777543 33335677788888877777


Q ss_pred             HHHHhcCCCCChh-HHHHHHHHHHhCCCccHHHHHHH
Q 037256          165 CKVFDEMSVRDLV-SWTVMITAYEQAEKPEEALILFQ  200 (680)
Q Consensus       165 ~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~  200 (680)
                      .+..+........ -....+..+.+.+-.++|.-+-.
T Consensus       451 ~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~  487 (933)
T KOG2114|consen  451 TEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT  487 (933)
T ss_pred             HHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence            7766665522111 13344444555555555544433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=88.55  E-value=4.9  Score=33.75  Aligned_cols=90  Identities=23%  Similarity=0.267  Sum_probs=51.5

Q ss_pred             HHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHccCCH
Q 037256          356 MYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE-GVKPD--HITFTSILSACSHAGLI  431 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~  431 (680)
                      +.+..|+++.|++.|.+.... ..+...||.-..++.-.|+.++|++=+++..+. |-+--  ...|..-...|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            455667777777777765333 245666777777777777777777777766653 21100  01233333344555666


Q ss_pred             HHHHHHHHHhhhcC
Q 037256          432 DEGRKCFADMTKLS  445 (680)
Q Consensus       432 ~~a~~~~~~m~~~~  445 (680)
                      +.|..-|+...+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            66666666555443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.26  E-value=37  Score=35.76  Aligned_cols=194  Identities=15%  Similarity=0.149  Sum_probs=128.3

Q ss_pred             hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037256           37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV  116 (680)
Q Consensus        37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  116 (680)
                      +-|+++..|..        |-+....+.+        |-...-+++..+.++-...-...+..+|...|  -+...|..+
T Consensus        44 ~k~si~~lyis--------g~~~~s~~~l--------~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el  105 (711)
T COG1747          44 SKNSIIALYIS--------GIISLSKQLL--------DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLEL  105 (711)
T ss_pred             hhhhhHHHHHH--------HHHHhhhccc--------cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHH
Confidence            45666666665        5443333322        44556778888988888888888889998865  467788999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------Ch---hHHHHHHHHHH
Q 037256          117 LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR------DL---VSWTVMITAYE  187 (680)
Q Consensus       117 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~------~~---~~~~~li~~~~  187 (680)
                      ++.|... .-++-..+++++++..+ .|++....|..-|-+ ++...+...|..+..+      +.   ..|..|+..- 
T Consensus       106 ~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-  181 (711)
T COG1747         106 LQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-  181 (711)
T ss_pred             HHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-
Confidence            9999888 55677888998888764 455666667777766 8888888888765422      11   1566665422 


Q ss_pred             hCCCccHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256          188 QAEKPEEALILFQKTQQ-EGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA  254 (680)
Q Consensus       188 ~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  254 (680)
                       ..+.+.-+.+..+... .|..--.+.+..+-.-|....++.++.+++..+.+.. ..|......++.
T Consensus       182 -~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~  247 (711)
T COG1747         182 -GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE  247 (711)
T ss_pred             -cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence             2345555555555543 2444455666667777888888888888888777765 334444444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.19  E-value=1.1  Score=27.58  Aligned_cols=32  Identities=31%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD  414 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  414 (680)
                      .+|..+...|...|++++|+..|++.++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            3566777777777777777777777776  4554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.15  E-value=35  Score=35.39  Aligned_cols=37  Identities=11%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             HHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256          501 NYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK  538 (680)
Q Consensus       501 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  538 (680)
                      ..+.++.| ++.+|.+++-.+....++++|..++..+.
T Consensus       486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            44566788 68899999999999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK09687 putative lyase; Provisional

Probab=88.09  E-value=29  Score=34.31  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS  423 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  423 (680)
                      .++..+-...+.++++.|+.+-...+.+.+  ..++  ..-..+.++...|.. +|+..+.++.+.  .||...-...+.
T Consensus       203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L--~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~  275 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKDKRVLSVLIKEL--KKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID  275 (280)
T ss_pred             CCChHHHHHHHHHHHccCChhHHHHHHHHH--cCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence            345556666666677766643333333333  2233  233566777777775 677777777763  456665555555


Q ss_pred             HHH
Q 037256          424 ACS  426 (680)
Q Consensus       424 a~~  426 (680)
                      +|.
T Consensus       276 a~~  278 (280)
T PRK09687        276 KLK  278 (280)
T ss_pred             HHh
Confidence            554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=88.03  E-value=19  Score=36.10  Aligned_cols=24  Identities=13%  Similarity=0.247  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHH
Q 037256          514 FVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       514 ~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      ...++++|-..|+.+.|..-++..
T Consensus       249 ~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  249 LLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHhcccHhHHHHHHHHH
Confidence            346888888888888777666653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.98  E-value=61  Score=37.96  Aligned_cols=91  Identities=23%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHhhhcchHHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT--ALILVSACTYLGSRQLG  331 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a  331 (680)
                      -+|.++|+.++|.+.                  |...|+|.+|+.+-.+|...   -|...  -..|.+-+...++.-+|
T Consensus       960 l~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen  960 LMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred             HHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence            356677777777654                  45678888888887776532   22222  13455555666666555


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      -++..+....   |     .-.+..|++...+++|.++-...
T Consensus      1019 a~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            5555444321   1     23445667777777777776554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=87.89  E-value=0.59  Score=31.10  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRS  104 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~  104 (680)
                      |..+...|.+.|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445555555555555555555555543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.60  E-value=4.9  Score=39.17  Aligned_cols=100  Identities=15%  Similarity=0.292  Sum_probs=73.0

Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                      .|.+....+...++..-....+++++...+-++...     .|  ...+|-.++.    .-++++++.++..=++-|+-|
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence            344555555566666666677888888887776322     12  2344444443    346779999999889999999


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          414 DHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       414 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      |..|++.+++.+.+.+++.+|.++...|+..
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999888777665

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.57  E-value=53  Score=36.77  Aligned_cols=192  Identities=8%  Similarity=-0.011  Sum_probs=103.4

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHH-hCCCchHHHHHHHHHHhCCCCCCcc-
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYA-NNGHCVETLELYSTMRRSGISSNSY-  111 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-  111 (680)
                      ++--|-.||.+-.+ |        ++.+.+-|.--|..  +..++-.+...+. ...++++|...+++....--+++-. 
T Consensus        29 ~l~~Y~kLI~~ai~-C--------L~~~~~~~~l~p~~--ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d   97 (608)
T PF10345_consen   29 QLKQYYKLIATAIK-C--------LEAVLKQFKLSPRQ--EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD   97 (608)
T ss_pred             hHHHHHHHHHHHHH-H--------HHHHhccCCCCHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            44556666666666 6        33332211111111  4566777777776 5788999999998775433222211 


Q ss_pred             ----cHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHHHH-HHHHHhcCChHHHHHHHhcCCC-----CC--
Q 037256          112 ----TFPFVLKACASNSLILEGKVVHGDIIRTGFL----SDSYVQAAL-VDMYAKCGQTDDGCKVFDEMSV-----RD--  175 (680)
Q Consensus       112 ----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~L-i~~~~~~g~~~~A~~~f~~~~~-----~~--  175 (680)
                          .-..++..+.+.+... |....+..++.--.    +-...+.-+ +..+...++...|.+.++.+..     .|  
T Consensus        98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~  176 (608)
T PF10345_consen   98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA  176 (608)
T ss_pred             HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence                1123344455554444 88888877654211    222233333 2333334788888888876642     12  


Q ss_pred             hhHHHHHHHHH--HhCCCccHHHHHHHHHHHcCC---------CCCHhHHHHHHHHHh--ccCChHHHHHHHHHH
Q 037256          176 LVSWTVMITAY--EQAEKPEEALILFQKTQQEGL---------LSDSVTIVSVASAVG--QLGDVLKAQAVHGYA  237 (680)
Q Consensus       176 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~  237 (680)
                      +..+-.++.+.  .+.+.++++++...++.....         .|-..+|..++..++  ..|+++.+.+....+
T Consensus       177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            23333444443  344667778888777743221         234556666776654  456666666554443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=87.35  E-value=1.7  Score=28.90  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +|..+...|...|++++|.++|++.++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555666666666666666655

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.19  E-value=33  Score=33.93  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHcCCHH---HHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLD---TAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS  423 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~---~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  423 (680)
                      .+...++.+|...+..+   +|.++.+.+....|+ +..+-.-+..+.+.++.+++.+.+.+|+.. +.-....|..++.
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~  163 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence            45566677777666544   445555555333444 333333444555577778888888888775 2212233444444


Q ss_pred             HH---HccCCHHHHHHHHHHhhhcCCCcCh
Q 037256          424 AC---SHAGLIDEGRKCFADMTKLSVKPEV  450 (680)
Q Consensus       424 a~---~~~g~~~~a~~~~~~m~~~~~~p~~  450 (680)
                      ..   .. .....+...++.+....+.|..
T Consensus       164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence            33   33 2234555555555555344444

It is also involved in sporulation [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.16  E-value=14  Score=31.89  Aligned_cols=52  Identities=12%  Similarity=0.057  Sum_probs=28.3

Q ss_pred             HHccCCHHHHHHHHHHhhhc-CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          425 CSHAGLIDEGRKCFADMTKL-SV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       425 ~~~~g~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..+.|++++|.+.|+.+... .. +-....--.++.+|.+.|++++|...+++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34456666666666666655 11 222333445566666666666666555543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.15  E-value=15  Score=36.62  Aligned_cols=61  Identities=5%  Similarity=-0.057  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHhCCCCCC-H-hhHHHHHHHHhhhcc--hHHHHHHHHHHHHcCCCCchHHHHHHH
Q 037256          294 SEALLLFDEMQNSDCKPN-P-VTALILVSACTYLGS--RQLGRKFHGYIINSNMKIDATLRNAVM  354 (680)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~--~~~a~~i~~~~~~~~~~~~~~~~~~li  354 (680)
                      +++..+|+.+.+.|...+ . ...+.++..+.....  ...+..+++.+.+.|+++....|..+.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            455666666666665543 2 233444443333222  346666777777777776666555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.14  E-value=16  Score=32.59  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhc-CChHHHHHHHhcCCC
Q 037256           96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA-ALVDMYAKC-GQTDDGCKVFDEMSV  173 (680)
Q Consensus        96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~~~~~-g~~~~A~~~f~~~~~  173 (680)
                      +..+.+.+.++.|+...+..++..+.+.|.+..-.+    ++..++-+|..... .|++.-.+. .-..-|.+++.++. 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-   89 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-   89 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence            445555667777888888888888888777654443    34444444443333 232221110 01223344444432 


Q ss_pred             CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256          174 RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC  239 (680)
Q Consensus       174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  239 (680)
                         ..+..++..+...|++-+|+++.+.....    +......++.+..+.+|...-..++.....
T Consensus        90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               24566777788888888888887764221    222234455555566665555555544443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.91  E-value=26  Score=32.46  Aligned_cols=164  Identities=14%  Similarity=0.078  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNS-DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD  355 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~  355 (680)
                      ...+......+...+.+..+...+...... ........+..........+....+...+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            355566666677777777777777666542 123333444444445555555555555555555433222 111111122


Q ss_pred             -HHHHcCCHHHHHHHHhhcCCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcc
Q 037256          356 -MYAKCGDLDTAENMFNDIHPSER----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHA  428 (680)
Q Consensus       356 -~y~k~g~~~~A~~~f~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~  428 (680)
                       .+...|+++.|...|.+.....+    ....+......+...++.++|...+.+...  ..|+  ...+..+...+...
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence             45555666666665555422222    112222222234445555555555555555  2222  33444444455555


Q ss_pred             CCHHHHHHHHHHhhh
Q 037256          429 GLIDEGRKCFADMTK  443 (680)
Q Consensus       429 g~~~~a~~~~~~m~~  443 (680)
                      +.++.+...+.....
T Consensus       216 ~~~~~a~~~~~~~~~  230 (291)
T COG0457         216 GKYEEALEYYEKALE  230 (291)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            555555555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.31  E-value=10  Score=33.74  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=8.6

Q ss_pred             HHcCChhHHHHHHHHHHh
Q 037256          288 IQNGQASEALLLFDEMQN  305 (680)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~  305 (680)
                      .+.|+...|...|.+.-.
T Consensus       105 a~kgdta~AV~aFdeia~  122 (221)
T COG4649         105 AQKGDTAAAVAAFDEIAA  122 (221)
T ss_pred             hhcccHHHHHHHHHHHhc
Confidence            344445555555554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=86.09  E-value=33  Score=32.87  Aligned_cols=56  Identities=14%  Similarity=0.041  Sum_probs=33.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          421 ILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       421 ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +..-|.+.|.+..|..-++.|++.  ...-.....-.|..+|-+.|..++|.+.-.-+
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            344566777777777777777775  22222334455666777777777765554443

>PRK09687 putative lyase; Provisional

Probab=85.87  E-value=38  Score=33.46  Aligned_cols=236  Identities=10%  Similarity=0.028  Sum_probs=122.6

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCh----hHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256          243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQA----SEALLLFDEMQNSDCKPNPVTALIL  318 (680)
Q Consensus       243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l  318 (680)
                      .+|..+....+..+...|..+....+..-...+|...-...+.++.+.|+.    ++++..+..+...  .|+...-...
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A  111 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA  111 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence            344445555555555555433333333333345555555566666666653    4566666666432  4555544455


Q ss_pred             HHHHhhhcchH--HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcC-C
Q 037256          319 VSACTYLGSRQ--LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHG-H  395 (680)
Q Consensus       319 l~a~~~~g~~~--~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-~  395 (680)
                      +.++...+...  ........+...-..++..+-...+.++++.++.+ |...+-.+. ..+|...-..-+.++.+.+ .
T Consensus       112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~  189 (280)
T PRK09687        112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINLL-KDPNGDVRNWAAFALNSNKYD  189 (280)
T ss_pred             HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHHh-cCCCHHHHHHHHHHHhcCCCC
Confidence            55554443211  01112222222222346666677777777777744 444444432 2344333334444444432 2


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      ..++...+..+..   .+|...-...+.+..+.|+. .+...+-...+.+   +  .....+.+++..|.. +|...+.+
T Consensus       190 ~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~  259 (280)
T PRK09687        190 NPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDT  259 (280)
T ss_pred             CHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence            4456666666663   45666666677777777774 4555555555432   2  234567778888875 56666666


Q ss_pred             C-CCCCCHhHHHHHHHHH
Q 037256          476 M-PLPPNDSVWGALLLAC  492 (680)
Q Consensus       476 m-~~~p~~~~~~~ll~a~  492 (680)
                      + .-.||..+-..-+.+|
T Consensus       260 l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        260 LLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             HHhhCCChhHHHHHHHHH
Confidence            5 3345655544444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.81  E-value=1.8  Score=27.21  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      |+.|...|.+.|++++|+++|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5556666666666666666666643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=33  Score=32.28  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             HhcCCHHHHHHHHHhC---CCCCCHhHHHH---HHHH--HHH------HHHHHHHHHHccCCCCCch
Q 037256          461 GRAGCLYEAFDMIKQM---PLPPNDSVWGA---LLLA--CRI------HGEIAANYLFQLEPEHTGY  513 (680)
Q Consensus       461 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~a--~~~------~~~~~~~~~~~l~p~~~~~  513 (680)
                      +..|++.+|+++|++.   .+..+..-|..   ++.+  |.-      .+..++++..+++|.-..+
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            4556667777776665   22223333321   1111  111      1567788888899974433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.77  E-value=1.6  Score=26.68  Aligned_cols=28  Identities=11%  Similarity=0.133  Sum_probs=24.4

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          512 GYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      ..+..++.+|...|++++|++.+++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4678899999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.56  E-value=2.6  Score=25.73  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      .|..+...|...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455566666667777777777776666

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=83.47  E-value=38  Score=31.47  Aligned_cols=124  Identities=10%  Similarity=0.053  Sum_probs=71.6

Q ss_pred             CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccCChHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA--CASNSLILEGKVV  132 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~  132 (680)
                      |-..-|+-=|.+.....|+ ...||-+.--+...|+++.|.+.|+...+..+.   .-|..+=++  +.-.|+++.|.+-
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHH
Confidence            5566666666666666674 456888888888999999999999998876533   223333222  2345778887766


Q ss_pred             HHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHH-HhcCCCCChhHHHHHHHHH
Q 037256          133 HGDIIRTGFLSDS--YVQAALVDMYAKCGQTDDGCKV-FDEMSVRDLVSWTVMITAY  186 (680)
Q Consensus       133 ~~~~~~~g~~~~~--~~~~~Li~~~~~~g~~~~A~~~-f~~~~~~~~~~~~~li~~~  186 (680)
                      +-..-+.+ +.|+  ..|--|+.   ..-+..+|..- .++....|..-|..-|-.|
T Consensus       156 ~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~  208 (297)
T COG4785         156 LLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF  208 (297)
T ss_pred             HHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHH
Confidence            65554443 2233  33333322   22344455433 3344444555565544443

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.46  E-value=19  Score=28.77  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256          253 VAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL  316 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (680)
                      +..+...|++++|..+.+.+.-||...|-+|-..  +.|..+++..-+.+|..+| .|...+|.
T Consensus        46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa  106 (115)
T TIGR02508        46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV  106 (115)
T ss_pred             HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            4456788999999999999988999999877554  6777777777777888777 66555553

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.14  E-value=32  Score=30.39  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=26.8

Q ss_pred             HcCCHHHHHHHHhhcCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSERNV---SSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +.++.++++.++..+.-..|..   .++...+  +...|++.+|+.+|+++.+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence            4556666666666553334432   2333222  4566777777777777655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.80  E-value=69  Score=33.91  Aligned_cols=58  Identities=17%  Similarity=0.105  Sum_probs=34.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ..|....-|.|+.++|.+.|+++.+..|.   ......|+.++...+.+.++..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            34445555667777777777766433222   23445566666667777777766666543

The molecular function of this protein is uncertain.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.51  E-value=1.7  Score=25.00  Aligned_cols=24  Identities=13%  Similarity=0.036  Sum_probs=21.2

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHH
Q 037256          512 GYFVLMSNIYAASNKWREVGKLRE  535 (680)
Q Consensus       512 ~~~~~l~~~~~~~g~~~~A~~~~~  535 (680)
                      .....|+.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            457789999999999999999875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=82.12  E-value=7.7  Score=35.33  Aligned_cols=47  Identities=11%  Similarity=0.073  Sum_probs=39.9

Q ss_pred             HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      +.....++++++|....+...-+.+|.+..++++|++-++++.+...
T Consensus       153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            44555688999998888888889999999999999999999987543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=81.98  E-value=26  Score=31.88  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256          248 IQNSIVAMYARCGNVEKARLVFDMMEKRD------LISWNSMLTGYIQNGQASEALLLFDEMQ  304 (680)
Q Consensus       248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (680)
                      .+..+.+.|.+.|+.+.|.+.|.++.+..      ...+-.+|....-.+++..+...+.+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45566666666666666666666665431      2234455555556666666665555544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=81.62  E-value=0.81  Score=28.47  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             ccCCCC-CcchHHHHHHHHHhCCCchHHH
Q 037256           68 IHNDKS-YSFLWNTMIRAYANNGHCVETL   95 (680)
Q Consensus        68 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~   95 (680)
                      ..+..| |..+|+.+...|...|++++|+
T Consensus         5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    5 AIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            333456 6778888888888888888875

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.68  E-value=55  Score=31.42  Aligned_cols=241  Identities=14%  Similarity=0.239  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHhcCC----CC---hhHHHHHHHHHHHcCChhHHHHHHHHHHh---CCC--CCCHhhHHHHHHHHhhhcch
Q 037256          261 NVEKARLVFDMMEK----RD---LISWNSMLTGYIQNGQASEALLLFDEMQN---SDC--KPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       261 ~~~~A~~~f~~m~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~g~~  328 (680)
                      +.++|..-|++..+    +.   --+.-.+|..+.+.+++++.+..+++|..   +.+  .-...+.++++...+...+.
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m  121 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM  121 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence            45555555555432    11   12234466677777777777777777642   111  12344566666655555554


Q ss_pred             HHHHHHHHHHHH----c-CCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC------CCC-------HhHHHHHHHHH
Q 037256          329 QLGRKFHGYIIN----S-NMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS------ERN-------VSSWNVLIAGY  390 (680)
Q Consensus       329 ~~a~~i~~~~~~----~-~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~-------~~~~~~li~~~  390 (680)
                      +.-..+++.-.+    . +-..--.+-+-|...|...|++.+..+++.++...      +.|       ...|..=|..|
T Consensus       122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY  201 (440)
T KOG1464|consen  122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY  201 (440)
T ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence            444444433221    0 10111122244666777777777777777776322      111       23566667778


Q ss_pred             HhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHH-HHhhhc---CCCcChHH---HHHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEG-VKPDHITFTSILSACS-----HAGLIDEGRKCF-ADMTKL---SVKPEVKH---YACMV  457 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~-~~m~~~---~~~p~~~~---~~~li  457 (680)
                      ....+-.+-..++++...-. --|-+ ....+++-|.     +.|.+++|-.-| +....-   | .|...+   |-.|.
T Consensus       202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLA  279 (440)
T KOG1464|consen  202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHH
Confidence            77777777777887766532 22333 3445566653     567787776443 333322   4 344333   44455


Q ss_pred             HHHHhcCCHHHHHHHHHh--C-C--CCCCHhHHHHHHHHHHHHHHHHHHHHHccCC
Q 037256          458 DMLGRAGCLYEAFDMIKQ--M-P--LPPNDSVWGALLLACRIHGEIAANYLFQLEP  508 (680)
Q Consensus       458 ~~~~~~g~~~~A~~~~~~--m-~--~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p  508 (680)
                      .++.+.|-     .-|+.  . |  ..|.......|+.+|.......+++++.-+.
T Consensus       280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~  330 (440)
T KOG1464|consen  280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNR  330 (440)
T ss_pred             HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence            55555541     11111  1 2  3455667778888888887777777766443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.54  E-value=2.6  Score=25.89  Aligned_cols=29  Identities=10%  Similarity=0.104  Sum_probs=24.9

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          512 GYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      ..|..++.+|...|++++|...+++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.01  E-value=3.1  Score=26.78  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          512 GYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      .++..|+.+|...|++++|.+++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4678899999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	680
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 80.6 bits (197), Expect = 9e-16
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 6/191 (3%)

Query: 296 ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355
           A  L D  + +   P       L+       S  + +   G    + +        A   
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 356 MYAKCGDLDTAENMFNDIHPSER-----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG 410
                  L  A ++    H   +      +  +N ++ G+   G  ++ +     + + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 411 VKPDHITFTSILSACSHAGLIDEG-RKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEA 469
           + PD +++ + L              +C   M++  +K +    A ++    RA  L   
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255

Query: 470 FDMIKQMPLPP 480
             +     LPP
Sbjct: 256 HKVKPTFSLPP 266

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 55.2 bits (131), Expect = 5e-08
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 8/148 (5%)

Query: 183 ITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAV---HGYAIC 239
           +         +       +  Q  L      +++          +  A  +   H     
Sbjct: 99  LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158

Query: 240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR----DLISWNSMLTGYIQNGQASE 295
              L  L + N+++  +AR G  ++   V  M++      DL+S+ + L    +  Q + 
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218

Query: 296 ALL-LFDEMQNSDCKPNPVTALILVSAC 322
            +    ++M     K   +   +L+S  
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEE 246

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.0 bits (115), Expect = 4e-06
 Identities = 14/181 (7%), Positives = 43/181 (23%), Gaps = 8/181 (4%)

Query: 101 MRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQ 160
            R++  S        +L+       +   +   G   +           A         Q
Sbjct: 83  TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142

Query: 161 TDDGCKVFDEM-------SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT 213
                 +            +  L  +  ++  + +    +E + +    +  GL  D ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 214 IVSVASAVGQLGDVLKA-QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMM 272
             +    +G+        +                    +++   R   ++    V    
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 273 E 273
            
Sbjct: 263 S 263

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.9 bits (99), Expect = 3e-04
 Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 56  GEPNTARSLFNSIHNDKSYSF-----LWNTMIRAYANNGHCVETLELYSTMRRSGISSNS 110
            +   A  L    H  +         ++N ++  +A  G   E + +   ++ +G++ + 
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200

Query: 111 YTFPFVLKACA 121
            ++   L+   
Sbjct: 201 LSYAAALQCMG 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 95/710 (13%), Positives = 188/710 (26%), Gaps = 230/710 (32%)

Query: 11  FYDQLLKS--CNFLA-SLRQIHSSLTTSGLINQ--ALHLGAKIIIKYTTYGEPNTARSLF 65
           F D  + +  C  +    + I S      +I    A+    ++     +  E    +   
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFV 83

Query: 66  NSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFP--FV------- 116
             +    +Y FL + +          + T  +Y   R    + N   F    V       
Sbjct: 84  EEVL-RINYKFLMSPI--KTEQRQPSMMT-RMYIEQRDRLYNDNQ-VFAKYNVSRLQPYL 138

Query: 117 -LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD 175
            L+         +  ++ G +   G           +    +C       K+F       
Sbjct: 139 KLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKM---DFKIF------- 185

Query: 176 LVSWTVMITAYEQAEKPEEALILFQ-------KTQQEGLLSDSVTIVSVASAVGQLGDVL 228
              W   +   +    PE  L + Q                 S   + + S   +L  +L
Sbjct: 186 ---W---LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARL--------VFDMM--EKRDLI 278
           K+     Y  C   L ++    +  A    C      ++        V D +       I
Sbjct: 239 KS---KPYENCLLVLLNVQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHI 289

Query: 279 SWNSMLTGYIQNGQASEALLLFDEMQNSD-----CKPNP-----VTALILVSACTYLGSR 328
           S +          +    LL + + +  D        NP     +   I     T+   +
Sbjct: 290 SLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE--NMFND--IHPSERNVSSWN 384
            +              I+++L             L+ AE   MF+   + P   ++ +  
Sbjct: 349 HVNCD------KLTTIIESSLNV-----------LEPAEYRKMFDRLSVFPPSAHIPT-- 389

Query: 385 VLIAGYGMHGHGRKALEFF-SQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT- 442
                          L      +++  V         +++      L+++  K   + T 
Sbjct: 390 -------------ILLSLIWFDVIKSDVM-------VVVNKLHKYSLVEKQPK---ESTI 426

Query: 443 -------KLSVKPE---------VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWG 486
                  +L VK E         V HY             +++ D+I     P  D    
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY--------NIPKTFDSDDLIP----PYLD---- 470

Query: 487 ALLLACRIHGEIAANYLFQLEPEHTGY----------FVLMSNIYAASNKWREVGKLRED 536
                          Y +     H G+            L   ++    ++ E  K+R D
Sbjct: 471 --------------QYFYS----HIGHHLKNIEHPERMTLFRMVF-LDFRFLE-QKIRHD 510

Query: 537 MKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCA 596
                    A+ S++   + +              + YK             Y+ D +  
Sbjct: 511 ----STAWNASGSILNTLQQL--------------KFYKP------------YICD-NDP 539

Query: 597 LHDVEDEDREHMLNYHSEKLA-------VAFGIMN----LTPEAVVQVTK 635
            ++         L    E L        +   +M     +  EA  QV +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 8e-08
 Identities = 77/584 (13%), Positives = 182/584 (31%), Gaps = 146/584 (25%)

Query: 158 CGQTDDGCKVFDEMSVRDLVSWTVMITAY-EQAEKPEEALILFQKTQQEGLLSDSVTI-- 214
             + ++  + F E  +R    +  +++    +  +P     ++   Q++ L +D+     
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAK 128

Query: 215 --VSVASAVGQLGDVLKAQ------AVHGYA----------ICNAFLEDLCIQNSIVAMY 256
             VS      +L   L          + G            +C ++     +   I   +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW 186

Query: 257 ARCGNVEKARLVFDMME--------------------KRDLISWNSMLTGYIQNGQASEA 296
               N      V +M++                    K  + S  + L   +++      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 297 LLLFDEMQNSD--------CKPNPVTALILV-----SACTYLGSRQLGRKFHGYIINSNM 343
           LL+   +QN+         CK       IL+         +L +       H   I+ + 
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK-------ILLTTRFKQVTDFLSA---ATTTH---ISLDH 293

Query: 344 KIDATLRNAVMDMYAKCGDLDTAE--NMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALE 401
                  + V  +  K  D    +        +P  R +S    +IA     G      +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLS----IIAESIRDGLAT--WD 345

Query: 402 FFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-VKHYACMVDML 460
            +  +  +         T+I+ +  +     E RK F     LSV P        ++ ++
Sbjct: 346 NWKHVNCD-------KLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI 395

Query: 461 GRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVL---M 517
                  +   ++ ++      S     L+  +            +    + Y  L   +
Sbjct: 396 WFDVIKSDVMVVVNKL---HKYS-----LVEKQ-----PKESTISI---PSIYLELKVKL 439

Query: 518 SNIYAASNKWREVGKLREDMKNKGLKKPAA----FSVIEYGKDIQGFH-----TADRVNP 568
            N YA      +   + +   +  L  P      +S I       G H       +R+  
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-------GHHLKNIEHPERMTL 492

Query: 569 YWKEVY-------KKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFG 621
           + + V+       +K+   +     +G + +    L  ++   + ++ +   +   +   
Sbjct: 493 F-RMVFLDFRFLEQKIRHDSTAWNASGSILNT---LQQLKFY-KPYICDNDPKYERLVNA 547

Query: 622 IMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANR 665
           I++  P    ++ +NL +C+      R I+ +   + I  +A++
Sbjct: 548 ILDFLP----KIEENL-ICSKYTDLLR-IALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 31/173 (17%)

Query: 2   RRLGPSTEGFYDQLLKSCNFLASLRQIHSSLTTSGLINQALHLGAKIIIKYTTY------ 55
           ++   ST       L+    L +   +H S+     I +       I      Y      
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 56  -----GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMR--RSGISS 108
                 E     +LF  +  D  + FL   +             L     ++  +  I  
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 109 NSYTFP--------FVLKACASNSLILEGKVVHGDIIRTGFLSDS---YVQAA 150
           N   +         F+ K    N  ++  K  + D++R   +++    + +A 
Sbjct: 537 NDPKYERLVNAILDFLPK-IEEN--LICSK--YTDLLRIALMAEDEAIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	680
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.75
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.67
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.63
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.48
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.44
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.35
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.34
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.22
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.19
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.05
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.94
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.87
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.86
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.81
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.79
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.79
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.66
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.6
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.5
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.45
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.43
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.33
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.32
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.3
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.21
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.21
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.17
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.16
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.16
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.15
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.07
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.02
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.99
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.98
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.96
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.96
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.95
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.95
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.94
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.92
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.92
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.88
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.88
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.85
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.85
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.84
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.8
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.75
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.72
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.64
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.38
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.92
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.82
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.7
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.53
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.44
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.45
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.34
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.17
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.61
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.61
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.95
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.9
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.27
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.26
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.17
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.03
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.65
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.3
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	90.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.98
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.66
2p58_C	116	Putative type III secretion protein YSCG; type III	87.88
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.8
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	86.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.1
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.53
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.95
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.9
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.84
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.57
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	84.41
2p58_C	116	Putative type III secretion protein YSCG; type III	82.09
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.43
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	80.67
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	80.11

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-42  Score=383.76  Aligned_cols=508  Identities=8%  Similarity=-0.044  Sum_probs=402.3

Q ss_pred             HHHHhccccccHHHHHHHhh----hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCC
Q 037256           14 QLLKSCNFLASLRQIHSSLT----TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNG   89 (680)
Q Consensus        14 ~~l~~~~~~~~~~~~h~~~~----~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g   89 (680)
                      .+...+.....++++|....    .......+...+.+ +      |.+..+...|+.++..  ++..|+.++..+.+.|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g   98 (597)
T 2xpi_A           28 AAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTST-D------GSFLKERNAQNTDSLS--REDYLRLWRHDALMQQ   98 (597)
T ss_dssp             -----------------CTTSCGGGGCGGGGGC----------------------------C--HHHHHHHHHHHHHHTT
T ss_pred             HHhcCCccHHHHhhccccccccceeechhhhhcccccc-c------CccCCCCCccccchHH--HHHHHHHHHHHHHHcc
Confidence            33333444444466676554    11112223334555 6      8889999999988876  8999999999999999


Q ss_pred             CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 037256           90 HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFD  169 (680)
Q Consensus        90 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~  169 (680)
                      ++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..+++.+...  ++++.+++.++.+|.++|++++|.++|+
T Consensus        99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~  174 (597)
T 2xpi_A           99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG  174 (597)
T ss_dssp             CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence            99999999999985  4678899999999999999999999999988653  6789999999999999999999999999


Q ss_pred             cCCCC-------------------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCChHH
Q 037256          170 EMSVR-------------------DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-SVTIVSVASAVGQLGDVLK  229 (680)
Q Consensus       170 ~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~  229 (680)
                      ++...                   ++.+|+.++.+|.+.|++++|+++|++|.+.+  |+ ...+..+...+...+..+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~  252 (597)
T 2xpi_A          175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEW  252 (597)
T ss_dssp             SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHH
T ss_pred             ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHH
Confidence            65433                   47899999999999999999999999999864  43 4444444443333322222


Q ss_pred             H--HHH-HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256          230 A--QAV-HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQ  304 (680)
Q Consensus       230 a--~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (680)
                      +  ..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+  ++..+|+.++.+|.+.|++++|+++|+++.
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  332 (597)
T 2xpi_A          253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL  332 (597)
T ss_dssp             HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1  111 44455555556667788889999999999999999999988  799999999999999999999999999999


Q ss_pred             hCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHH
Q 037256          305 NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSW  383 (680)
Q Consensus       305 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~  383 (680)
                      +.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.... .+..+|
T Consensus       333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  410 (597)
T 2xpi_A          333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW  410 (597)
T ss_dssp             HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            765 4477889999999999999999999999998765 6688999999999999999999999999985444 468899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA  463 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  463 (680)
                      +.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.
T Consensus       411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          411 IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence            999999999999999999999999852 3467899999999999999999999999999864 45788999999999999


Q ss_pred             CCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256          464 GCLYEAFDMIKQM-------PLPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       464 g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~  529 (680)
                      |++++|.++|+++       +..|+  ..+|..+..+|...     |...++++++++|+++.+|..++.+|.+.|++++
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  568 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL  568 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            9999999999988       45787  67999999999887     7788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 037256          530 VGKLREDMKNK  540 (680)
Q Consensus       530 A~~~~~~m~~~  540 (680)
                      |.+.++++.+.
T Consensus       569 A~~~~~~~l~~  579 (597)
T 2xpi_A          569 AITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.9e-39  Score=355.68  Aligned_cols=476  Identities=9%  Similarity=-0.001  Sum_probs=401.8

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF  113 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  113 (680)
                      ++..++.++..|.+ .      |++++|..+|+++....||..+|+.++.+|.+.|++++|+.+|+++...  +++..++
T Consensus        83 ~~~~~~~~~~~~~~-~------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~  153 (597)
T 2xpi_A           83 REDYLRLWRHDALM-Q------QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR  153 (597)
T ss_dssp             HHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred             HHHHHHHHHHHHHH-c------cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence            78899999999999 8      9999999999999877788899999999999999999999999998653  6788999


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 037256          114 PFVLKACASNSLILEGKVVHGDIIRT---------------GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR---D  175 (680)
Q Consensus       114 ~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~---~  175 (680)
                      +.++.++.+.|++++|.++|+++...               |.+.+..+|+.++.+|.+.|++++|.++|+++...   +
T Consensus       154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  233 (597)
T 2xpi_A          154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC  233 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999853211               22335889999999999999999999999998643   4


Q ss_pred             hhHHHHHHHHHHhCCCccHHHHH---HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHH
Q 037256          176 LVSWTVMITAYEQAEKPEEALIL---FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSI  252 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L  252 (680)
                      ...|..+...+...+..+.+...   +..+...+..++..+|..++..|.+.|++++|.++++.+.+.  +++..+++.+
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l  311 (597)
T 2xpi_A          234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK  311 (597)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred             hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence            45666666555544333322211   455555555556667777788888999999999999988776  5789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256          253 VAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ  329 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (680)
                      +.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|+++
T Consensus       312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence            9999999999999999998863   467889999999999999999999999998653 567888999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|.++|++|.+
T Consensus       391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999998765 45788999999999999999999999998855444 688999999999999999999999999998


Q ss_pred             cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 037256          409 EGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL----SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP-  480 (680)
Q Consensus       409 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-  480 (680)
                      .. +.+..+|+.+...|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++ ...| 
T Consensus       470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            53 336778999999999999999999999999876    66787  789999999999999999999999887 3344 


Q ss_pred             CHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256          481 NDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAA  523 (680)
Q Consensus       481 ~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~  523 (680)
                      +..+|..+...|...     |...++++++++|+++..+..|+++|..
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            678888888888776     7778889999999999999999998754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=7.9e-28  Score=257.28  Aligned_cols=186  Identities=16%  Similarity=0.205  Sum_probs=174.4

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc---------chHHHHHHHHHHHHcCCCCchH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG---------SRQLGRKFHGYIINSNMKIDAT  348 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~i~~~~~~~~~~~~~~  348 (680)
                      ..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|+..+         .++.|.++|+.|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            4578889999999999999999999999999999999999999998654         4788999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS  426 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  426 (680)
                      +||+||++|++.|++++|.++|++|...  .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999543  79999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA  463 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  463 (680)
                      +.|++++|.++|++|.+.|..|+..||+.+++.|...
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=5.7e-25  Score=230.39  Aligned_cols=374  Identities=12%  Similarity=0.099  Sum_probs=241.6

Q ss_pred             HHHHHhCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037256           82 IRAYANNGHCVETLELYSTMRRSGISSN-SYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQ  160 (680)
Q Consensus        82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~  160 (680)
                      ...+.+.|++++|++.|+++.+..  |+ ...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            344556677777777776666542  33 3344444455566667777776666666653 4455666666666666666


Q ss_pred             hHHHHHHHhcCC--CC-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHH
Q 037256          161 TDDGCKVFDEMS--VR-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA  237 (680)
Q Consensus       161 ~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  237 (680)
                      +++|...|+++.  .| +..+|..+...+.+.|++++|++.|+++.+..  |+                           
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------------------------  133 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PD---------------------------  133 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TT---------------------------
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------------
Confidence            666666666553  12 34456666666666666666666666665532  22                           


Q ss_pred             HHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256          238 ICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT  314 (680)
Q Consensus       238 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  314 (680)
                             +...+..+...|...|++++|.+.|+++.+   .+..+|+.+...+.+.|++++|+..|+++.+.. +.+...
T Consensus       134 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~  205 (388)
T 1w3b_A          134 -------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA  205 (388)
T ss_dssp             -------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             -------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence                   223334444455555555555555555432   234556666666666666666666666666542 223445


Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH  393 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~  393 (680)
                      +..+...+...|++++|...+....+.. +.+..++..+...|.+.|++++|.+.|+++....| +..+|..+...|.+.
T Consensus       206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            5556666666666666666666665543 34566777778888888888888888887755444 466788888888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256          394 GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI  473 (680)
Q Consensus       394 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  473 (680)
                      |++++|++.|+++.+. .+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus       285 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888888875 23455678888888888888888888888887643 445677888888888888888888887


Q ss_pred             HhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 037256          474 KQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASN  525 (680)
Q Consensus       474 ~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g  525 (680)
                      +++                           ++++|+++..+..++.++...|
T Consensus       363 ~~a---------------------------~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          363 KEA---------------------------IRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHH---------------------------HTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHH---------------------------HhhCCCCHHHHHhHHHHHHHcc
Confidence            764                           3456666677777777766655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=7.1e-27  Score=249.89  Aligned_cols=202  Identities=12%  Similarity=0.119  Sum_probs=175.4

Q ss_pred             hHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC---------H
Q 037256          294 SEALLLFDEMQNSDCKPNP-VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD---------L  363 (680)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~---------~  363 (680)
                      ..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4456677788877766544 46888999999999999999999999999999999999999999998765         6


Q ss_pred             HHHHHHHhhcCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 037256          364 DTAENMFNDIHPS--ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADM  441 (680)
Q Consensus       364 ~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m  441 (680)
                      ++|.++|++|...  .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            8899999999443  79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHHH
Q 037256          442 TKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM---PLPPNDSVWGALLLACRIH  495 (680)
Q Consensus       442 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~  495 (680)
                      .+.|+.||..+|++||++|++.|++++|.+++++|   +..|+..||++++..+...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999   7899999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=2.4e-24  Score=225.64  Aligned_cols=362  Identities=9%  Similarity=0.032  Sum_probs=277.9

Q ss_pred             CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |++++|.+.|+.+....|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++
T Consensus        13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~   91 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999888784 5567778888899999999999999988764 3477889999999999999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS  211 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  211 (680)
                      .+++.. +.+...+..+...|.+.|++++|.+.|+++..  | +...+..+...+...|++++|.+.|+++.+.. +.+.
T Consensus        92 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~  169 (388)
T 1w3b_A           92 HALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA  169 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH
Confidence            999875 44567899999999999999999999998752  3 45678889999999999999999999998763 3356


Q ss_pred             hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 037256          212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYI  288 (680)
Q Consensus       212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~  288 (680)
                      .++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+   .+..+|..+...|.
T Consensus       170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            778888888888999999999988888765 34566777788888888888888888876643   35677788888888


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256          289 QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN  368 (680)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~  368 (680)
                      +.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..+++.+...|.+.|++++|.+
T Consensus       249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  326 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888887653 3345566667777777777777777777776654 4556666667777777777777777


Q ss_pred             HHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 037256          369 MFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSAC  425 (680)
Q Consensus       369 ~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~  425 (680)
                      .|+++....| +..+|..+...|.+.|++++|++.|+++.+  ..|+.. .+..+...+
T Consensus       327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence            7776654444 355666666677777777777777776665  455432 444444333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.6e-22  Score=216.21  Aligned_cols=250  Identities=11%  Similarity=0.028  Sum_probs=167.1

Q ss_pred             cCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256          259 CGNVEKARLVFDMMEK----------------R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA  321 (680)
Q Consensus       259 ~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (680)
                      .|++++|...|+++.+                + +..+|..+...+...|++++|...|+++.+..  |+...+..+...
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~  279 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI  279 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence            5666666666655433                1 23456666667777777777777777766543  235566666666


Q ss_pred             HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256          322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  400 (680)
                      +...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++....| +...|..+...|...|++++|+
T Consensus       280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  358 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE  358 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence            666777777777776666544 33555666677777777777777777776643333 4556666777777777777777


Q ss_pred             HHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcC----hHHHHHHHHHHHh---cCCHHHHHH
Q 037256          401 EFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPE----VKHYACMVDMLGR---AGCLYEAFD  471 (680)
Q Consensus       401 ~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~----~~~~~~li~~~~~---~g~~~~A~~  471 (680)
                      ..++++.+.  .| +..++..+...+...|++++|...++++.+. .-.++    ...+..+...|.+   .|++++|.+
T Consensus       359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~  436 (514)
T 2gw1_A          359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN  436 (514)
T ss_dssp             HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred             HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence            777777663  33 3446666666777777777777777776654 11122    3366666677777   777777766


Q ss_pred             HHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          472 MIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       472 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      .+++                           ++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       437 ~~~~---------------------------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          437 LLEK---------------------------ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHH---------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHH---------------------------HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            6654                           45567888889999999999999999999999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.2e-21  Score=209.55  Aligned_cols=430  Identities=10%  Similarity=-0.055  Sum_probs=285.7

Q ss_pred             HHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037256           40 QALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA  119 (680)
Q Consensus        40 ~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  119 (680)
                      .+-..|.+ .      |++++|+..|+++....||..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..+
T Consensus        11 ~~g~~~~~-~------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~   82 (514)
T 2gw1_A           11 DKGNQFFR-N------KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHH-T------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred             HHHHHHHH-h------ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence            34445555 5      999999999999988888888999999999999999999999999987642 255688888899


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCccHH
Q 037256          120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV----RDLVSWTVMITAYEQAEKPEEA  195 (680)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A  195 (680)
                      +...|++++|...++.+.+.+ +++......++..+.+......+.+.+..+..    ++...++.-.............
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            999999999999999998876 34444444555544443333333332221110    0000010000000111111111


Q ss_pred             HHHHHHHHHcCCC--------CC-HhHHHHHHHHHh---ccCChHHHHHHHHHHHH-----ccC--------CCChhHHH
Q 037256          196 LILFQKTQQEGLL--------SD-SVTIVSVASAVG---QLGDVLKAQAVHGYAIC-----NAF--------LEDLCIQN  250 (680)
Q Consensus       196 ~~~~~~m~~~g~~--------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~  250 (680)
                      ..+...+......        |+ ...+......+.   ..|++++|...+..+++     ..-        +.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            1111111111100        11 222333333333   36777777777777766     211        22355677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256          251 SIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       251 ~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (680)
                      .+...|...|++++|...|+++.+  |+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence            777888888888888888877642  336677778888888888888888888887653 34556677777788888888


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256          329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      +.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++....| +...|..+...|...|++++|...++++.
T Consensus       321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88888888887765 34567778888888888888888888887744333 46678888888888888888888888887


Q ss_pred             HcCCCCC-------HHHHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256          408 EEGVKPD-------HITFTSILSACSH---AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-  476 (680)
Q Consensus       408 ~~g~~p~-------~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-  476 (680)
                      +.  .|+       ..++..+...+..   .|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. 
T Consensus       400 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          400 EL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Hh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            63  232       2277778888888   888888888888887753 345677788888888888988888888876 


Q ss_pred             CCCCCHh
Q 037256          477 PLPPNDS  483 (680)
Q Consensus       477 ~~~p~~~  483 (680)
                      .+.|+..
T Consensus       477 ~~~~~~~  483 (514)
T 2gw1_A          477 DLARTME  483 (514)
T ss_dssp             HHCSSHH
T ss_pred             HhccccH
Confidence            4455543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.89  E-value=3.2e-20  Score=198.12  Aligned_cols=313  Identities=11%  Similarity=0.041  Sum_probs=166.1

Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 037256          143 SDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVAS  219 (680)
Q Consensus       143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  219 (680)
                      .+...+..+...|.+.|++++|...|+++.   ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            345556666666666666666666666543   2345566666666666666666666666665543 223444555555


Q ss_pred             HHhccCChHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHH
Q 037256          220 AVGQLGDVLKAQAVHGYAICNAFLEDL---CIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEA  296 (680)
Q Consensus       220 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A  296 (680)
                      .+...|++++|...+..+.+.. +.+.   ..+..++..+...                   .+..+...+.+.|++++|
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence            5555555555555555554432 1122   2333332220000                   011112235555566666


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 037256          297 LLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS  376 (680)
Q Consensus       297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~  376 (680)
                      +..|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++...
T Consensus       163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66665555432 3344455555555555555555555555555443 334555555666666666666666666655333


Q ss_pred             CCC-HhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHH
Q 037256          377 ERN-VSSWNVL------------IAGYGMHGHGRKALEFFSQMLEEGVKPD-----HITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       377 ~~~-~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      .|+ ...+..+            ...|...|++++|+..|+++.+  +.|+     ...+..+...+.+.|++++|...+
T Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            332 2333333            5556666666666666666665  3343     224555555666666666666666


Q ss_pred             HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256          439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN  481 (680)
Q Consensus       439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  481 (680)
                      +++.+.. +.+...|..+..+|...|++++|.+.++++ .+.|+
T Consensus       319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            6665542 234556666666666666666666666654 44444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.89  E-value=9.3e-21  Score=202.34  Aligned_cols=382  Identities=10%  Similarity=0.005  Sum_probs=216.5

Q ss_pred             ChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256           57 EPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD  135 (680)
Q Consensus        57 ~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  135 (680)
                      ....+...|.......| +...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.
T Consensus         7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A            7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            33445555666655666 56778888888888888888888888887753 23567778888888888888888888888


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch---hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCC
Q 037256          136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR---DL---VSWTVMITAYEQAEKPEEALILFQKTQQEGLLS  209 (680)
Q Consensus       136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  209 (680)
                      +++.+ +.+..++..+..+|.+.|++++|.+.|+++...   +.   ..|..++..+...+                   
T Consensus        86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------  145 (450)
T 2y4t_A           86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------  145 (450)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------
Confidence            88875 445677778888888888888888888776543   22   45555544311100                   


Q ss_pred             CHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037256          210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTG  286 (680)
Q Consensus       210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~  286 (680)
                          +..+...+...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+   .+..+|..+...
T Consensus       146 ----~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  220 (450)
T 2y4t_A          146 ----LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL  220 (450)
T ss_dssp             ----HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                1111122233344444444444444332 23344455555555555555555555555432   344555555555


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCC-HhhHHHH------------HHHHhhhcchHHHHHHHHHHHHcCCCCc----hHH
Q 037256          287 YIQNGQASEALLLFDEMQNSDCKPN-PVTALIL------------VSACTYLGSRQLGRKFHGYIINSNMKID----ATL  349 (680)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~i~~~~~~~~~~~~----~~~  349 (680)
                      |.+.|++++|+..|+++.+.  .|+ ...+..+            ...+...|++++|...+..+.+.... +    ..+
T Consensus       221 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~  297 (450)
T 2y4t_A          221 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS  297 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence            55556666666555555543  222 2222222            45566666666666666666554311 1    235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH-----
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSIL-----  422 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll-----  422 (680)
                      +..+..+|.+.|++++|...++++....| +...|..+..+|...|++++|...|+++.+  +.|+.. .+..+.     
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH
Confidence            66667777777777777777776633333 466777777777777777777777777766  556543 333333     


Q ss_pred             -------HHHHccC-----CHHHHHHHHHHh-hhc--CCCcC-------hHHHHHHHHHHHhcCCHHHH
Q 037256          423 -------SACSHAG-----LIDEGRKCFADM-TKL--SVKPE-------VKHYACMVDMLGRAGCLYEA  469 (680)
Q Consensus       423 -------~a~~~~g-----~~~~a~~~~~~m-~~~--~~~p~-------~~~~~~li~~~~~~g~~~~A  469 (680)
                             ..|...|     ..+++.+.++++ .+.  ...|+       ...+..+..+|...|+.+++
T Consensus       376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence                   1233344     556667766653 222  11122       23666777777777776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=7.2e-21  Score=208.13  Aligned_cols=424  Identities=13%  Similarity=0.062  Sum_probs=264.9

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDM  154 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~  154 (680)
                      ...|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            35677788888889999999999998887642 366778888888888899999999999888876 4567788888888


Q ss_pred             HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc------CCCCCHhHHHHHHHHHhccCChH
Q 037256          155 YAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE------GLLSDSVTIVSVASAVGQLGDVL  228 (680)
Q Consensus       155 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~  228 (680)
                      |...|++++|...|+.+. .+....+..+..+...+...+|+..++++...      ...|+...+...+    ...+.+
T Consensus       103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~  177 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH  177 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred             HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence            888999999998886442 22223333344555556667788888887543      1223333332222    223333


Q ss_pred             HHHHHHHHHHHccCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHHhcCCC--C--------hhHHHHHHHHH
Q 037256          229 KAQAVHGYAICNAFLEDLC---IQNSIVAMYAR--------CGNVEKARLVFDMMEKR--D--------LISWNSMLTGY  287 (680)
Q Consensus       229 ~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~--------~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~  287 (680)
                      .+...+..    ....+..   ....+...+..        .|++++|..+|+++.+.  +        ..+|..+...+
T Consensus       178 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~  253 (537)
T 3fp2_A          178 LEVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH  253 (537)
T ss_dssp             HHHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence            22221111    1111111   22333333222        23667777777766542  1        22455556667


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHH
Q 037256          288 IQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE  367 (680)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~  367 (680)
                      ...|++++|...|+++.+.  .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus       254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence            7777777777777777764  3445666666667777777777777777776654 345666666777777777777777


Q ss_pred             HHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC
Q 037256          368 NMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       368 ~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~  445 (680)
                      +.|+++....| +...|..+...|...|++++|++.++++.+.  .|+ ...+..+...+...|++++|.+.|+++.+..
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            77776633333 3456666667777777777777777777663  333 3456666666677777777777776665531


Q ss_pred             -----CCcChHHHHHHHHHHHhc----------CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256          446 -----VKPEVKHYACMVDMLGRA----------GCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH  510 (680)
Q Consensus       446 -----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~  510 (680)
                           .......+..+...|.+.          |++++|...++                           +++++.|++
T Consensus       409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~---------------------------~a~~~~p~~  461 (537)
T 3fp2_A          409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT---------------------------KACELDPRS  461 (537)
T ss_dssp             HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH---------------------------HHHHHCTTC
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH---------------------------HHHHhCCCC
Confidence                 011112223333444444          55555555554                           456778999


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          511 TGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      +..+..++.+|...|++++|.+.+++..+..
T Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998743

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=9.6e-20  Score=199.16  Aligned_cols=428  Identities=8%  Similarity=-0.005  Sum_probs=315.4

Q ss_pred             hhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037256           36 GLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFP  114 (680)
Q Consensus        36 ~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  114 (680)
                      ..+..+-..|.+ .      |++++|.+.|+.+....| +..+|..+...+.+.|++++|++.|+++.+..+ .+..++.
T Consensus        26 ~~~~~~g~~~~~-~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~   97 (537)
T 3fp2_A           26 VQLKNRGNHFFT-A------KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALL   97 (537)
T ss_dssp             HHHHHHHHHHHH-T------TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHHHHHHHHH-h------ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHH
Confidence            444555666666 6      999999999999988877 678899999999999999999999999988653 2667888


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChhHHHHHHHHHHh
Q 037256          115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR------DLVSWTVMITAYEQ  188 (680)
Q Consensus       115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~  188 (680)
                      .+..++...|++++|...++ .+..  .|+.  .+..+..+...+....|...++++...      ........+..+..
T Consensus        98 ~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T 3fp2_A           98 RRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG  172 (537)
T ss_dssp             HHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence            88899999999999999996 3332  2222  222344555666678888888877542      12233445555666


Q ss_pred             CCCccHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhc--------cCChHHHHHHHHHHHHccCCCC------hhHHHHHH
Q 037256          189 AEKPEEALILFQKTQQEGLLSDSVTIVSVA-SAVGQ--------LGDVLKAQAVHGYAICNAFLED------LCIQNSIV  253 (680)
Q Consensus       189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~g~~~~------~~~~~~Li  253 (680)
                      ..+.+.++..+.....  ..+....+...+ ..+..        .+++++|..++..+++......      ..++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g  250 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG  250 (537)
T ss_dssp             TSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence            6776666555443322  122222222222 22222        2477888888888877643221      22466777


Q ss_pred             HHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256          254 AMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG  331 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (680)
                      ..+...|++++|...|++..+  |+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++.|
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence            888999999999999998864  567888889999999999999999999998764 44677888999999999999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 037256          332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG  410 (680)
Q Consensus       332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  410 (680)
                      ...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++....| +...|..+...|...|++++|.+.|+++.+..
T Consensus       330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            99999998876 44678889999999999999999999998854444 46789999999999999999999999988743


Q ss_pred             CC-C----CHHHHHHHHHHHHcc----------CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          411 VK-P----DHITFTSILSACSHA----------GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       411 ~~-p----~~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      .. +    ....+......+...          |++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++
T Consensus       409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            11 1    112244445667777          99999999999998864 45678899999999999999999999998


Q ss_pred             C-CCCCC
Q 037256          476 M-PLPPN  481 (680)
Q Consensus       476 m-~~~p~  481 (680)
                      . .+.|+
T Consensus       488 al~~~~~  494 (537)
T 3fp2_A          488 SAILART  494 (537)
T ss_dssp             HHHHC--
T ss_pred             HHHhCCC
Confidence            6 34444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.81  E-value=4.4e-17  Score=167.61  Aligned_cols=298  Identities=9%  Similarity=0.021  Sum_probs=195.3

Q ss_pred             hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 037256          177 VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMY  256 (680)
Q Consensus       177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y  256 (680)
                      ..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+..+|
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            344555555555555555555555555432 2234455555555555555555555555555543 22445555566666


Q ss_pred             HhcCCHHHHHHHHHhcCCC------ChhHHHHH------------HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256          257 ARCGNVEKARLVFDMMEKR------DLISWNSM------------LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALIL  318 (680)
Q Consensus       257 ~~~g~~~~A~~~f~~m~~~------~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  318 (680)
                      .+.|++++|...|+++.+.      +...+..+            ...+...|++++|++.|+++.+.. +.+...+..+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~  160 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR  160 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence            6666666666666655432      22223222            567778888888888888877653 4456677777


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHH------------H
Q 037256          319 VSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWN------------V  385 (680)
Q Consensus       319 l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~------------~  385 (680)
                      ...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.....|+ ...|.            .
T Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  239 (359)
T 3ieg_A          161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE  239 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence            777788888888888888777654 456677778888888888888888888877443443 33332            2


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-----TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      +...+.+.|++++|+..++++.+.  .|+..     .+..+...+...|++++|...++...+.. +.+...+..+...|
T Consensus       240 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          240 SAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            355678888999999999888884  34432     24446677888889999999988888753 44677888888888


Q ss_pred             HhcCCHHHHHHHHHhC-CCCCC
Q 037256          461 GRAGCLYEAFDMIKQM-PLPPN  481 (680)
Q Consensus       461 ~~~g~~~~A~~~~~~m-~~~p~  481 (680)
                      .+.|++++|.+.+++. .+.|+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Confidence            8899998888888775 34443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=1.4e-16  Score=163.77  Aligned_cols=296  Identities=13%  Similarity=0.105  Sum_probs=221.3

Q ss_pred             HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 037256          211 SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGY  287 (680)
Q Consensus       211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~  287 (680)
                      ...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+   .+...|..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4556677788889999999999999998875 45677888899999999999999999998764   3667889999999


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCC----CHhhHHHH------------HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHH
Q 037256          288 IQNGQASEALLLFDEMQNSDCKP----NPVTALIL------------VSACTYLGSRQLGRKFHGYIINSNMKIDATLRN  351 (680)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~  351 (680)
                      ...|++++|...|+++.+.  .|    +...+..+            ...+...|+++.|...+..+.+.. +.+..++.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            9999999999999999875  34    33333333            356677788888888888777665 45667777


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHH----------
Q 037256          352 AVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFT----------  419 (680)
Q Consensus       352 ~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~----------  419 (680)
                      .+...|.+.|++++|...|+++....| +...|..+...|...|++++|...|++..+.  .|+.. .+.          
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence            777888888888888888877754433 5667777777788888888888888877773  34432 222          


Q ss_pred             --HHHHHHHccCCHHHHHHHHHHhhhcCCCcCh----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 037256          420 --SILSACSHAGLIDEGRKCFADMTKLSVKPEV----KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACR  493 (680)
Q Consensus       420 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~  493 (680)
                        .+...+...|++++|...++++.+.. +.+.    ..+..+...+.+.|++++|.+.+++                  
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------  297 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSE------------------  297 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH------------------
Confidence              22445667777777777777776652 1112    2344566677777777777766654                  


Q ss_pred             HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          494 IHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       494 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                               ++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       298 ---------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          298 ---------VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             ---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ---------HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                     45568888999999999999999999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=9.6e-18  Score=170.94  Aligned_cols=284  Identities=14%  Similarity=0.090  Sum_probs=138.0

Q ss_pred             hcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHH
Q 037256          157 KCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGY  236 (680)
Q Consensus       157 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  236 (680)
                      +.|++++|.+.++++..|+  +|+.|+.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|..++..
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            6788999999999996654  999999999999999999999975      36778999999999999999999998888


Q ss_pred             HHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256          237 AICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL  316 (680)
Q Consensus       237 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (680)
                      .++.  .+++.+.+.|+.+|.++|+++++.++++   .|+..+|+.+...|...|++++|..+|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            8774  4557889999999999999999998885   467789999999999999999999999977         3789


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCCh
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHG  396 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~  396 (680)
                      .+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+.   .++.-...++..|.+.|++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCH
Confidence            9999999999999999999887      378999999999999999999988777652   3333345688999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH--ccCCHHHHHHHHHHhhhc-CCCc------ChHHHHHHHHHHHhcCCH
Q 037256          397 RKALEFFSQMLEEGVKPDH-ITFTSILSACS--HAGLIDEGRKCFADMTKL-SVKP------EVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       397 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~  466 (680)
                      ++|+.+++....  ..|.. ..|+-+.-+++  +.+++.+.++.|.   ++ +++|      +..+|.-++-.|...+++
T Consensus       224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~  298 (449)
T 1b89_A          224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY  298 (449)
T ss_dssp             HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            999999998875  44443 35665555554  4455555555554   33 6666      467899999999999999


Q ss_pred             HHHHHHHHhC
Q 037256          467 YEAFDMIKQM  476 (680)
Q Consensus       467 ~~A~~~~~~m  476 (680)
                      +.|...+-+-
T Consensus       299 d~A~~tm~~h  308 (449)
T 1b89_A          299 DNAIITMMNH  308 (449)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9998877655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.78  E-value=2.1e-16  Score=160.59  Aligned_cols=266  Identities=10%  Similarity=-0.023  Sum_probs=168.8

Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA  254 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  254 (680)
                      +...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+..+++.. +.          
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~----------   88 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS----------   88 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT----------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC----------
Confidence            44555566666666666666666666665542 2233334444444455555555555555554432 22          


Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG-QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                                           +...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|..
T Consensus        89 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  146 (330)
T 3hym_B           89 ---------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA  146 (330)
T ss_dssp             ---------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ---------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence                                 3344444444455555 4555555555544432 2223344444455555555555555


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV-  411 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-  411 (680)
                      .+..+.+.. +.+...+..+...|...|++++|.+.|++.....| +...|..+...|...|++++|...+++..+... 
T Consensus       147 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          147 AYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            555554443 22345556677788888888888888888755543 567888888888888888888888888876411 


Q ss_pred             -------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          412 -------KPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       412 -------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                             +.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus       226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                   2234578888888888999999999998888764 446778888888999999999998888876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.7e-17  Score=169.10  Aligned_cols=281  Identities=13%  Similarity=0.101  Sum_probs=114.0

Q ss_pred             CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD  135 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  135 (680)
                      |++++|.+.+++++.+    .+|..+..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...++.
T Consensus        17 ~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           17 GNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999999554    48999999999999999999999763      5778999999999999999999998887


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH
Q 037256          136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIV  215 (680)
Q Consensus       136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  215 (680)
                      ..+.  .+++.+.+.|+.+|.++|+++++.++|+.   |+..+|+.+...|...|.+++|...|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            7774  46688899999999999999999988864   67789999999999999999999999976         3677


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhH
Q 037256          216 SVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASE  295 (680)
Q Consensus       216 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~  295 (680)
                      .+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence            8888888888888888887766      367788888888888888888877666554 344444567778888888888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHh--hhcchHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHcCCHHHHH
Q 037256          296 ALLLFDEMQNSDCKPNPVTALILVSACT--YLGSRQLGRKFHGYIINSNMKI------DATLRNAVMDMYAKCGDLDTAE  367 (680)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~y~k~g~~~~A~  367 (680)
                      |+.+++...... +.....|+-+.-+++  +.+.+.+..+.|..  +.++++      +...|..++-.|.+-++++.|.
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~  302 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  302 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            888887776443 333333443333333  33444444443331  122222      3455666666666666666665


Q ss_pred             HHH
Q 037256          368 NMF  370 (680)
Q Consensus       368 ~~f  370 (680)
                      ...
T Consensus       303 ~tm  305 (449)
T 1b89_A          303 ITM  305 (449)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=3.5e-16  Score=167.97  Aligned_cols=283  Identities=11%  Similarity=0.021  Sum_probs=164.8

Q ss_pred             CHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh----hhcchHH
Q 037256          261 NVEKARLVFDMMEK--R-DLISWNSMLTG---YIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACT----YLGSRQL  330 (680)
Q Consensus       261 ~~~~A~~~f~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~  330 (680)
                      ++++|...|++..+  | ++..+..+...   +...++.++|++.|++..+.. +.+...+..+...+.    ..++.+.
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            45666666665542  2 33344433333   334456666777776666542 223444444433332    2345666


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHh-----------------
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGM-----------------  392 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~-----------------  392 (680)
                      |.+.++...+.. +.+..++..+...|.+.|++++|...|++.....|+ ..+|..+...|..                 
T Consensus       232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            777776666554 445666677777777777777777777776443443 4455555544432                 


Q ss_pred             --cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH--HHHHHHH-HHHhcCCH
Q 037256          393 --HGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK--HYACMVD-MLGRAGCL  466 (680)
Q Consensus       393 --~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~  466 (680)
                        .+..++|...|++..+  ..|+. .++..+...+...|++++|.+.|++..+....|...  .+..+.. .+...|+.
T Consensus       311 ~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE  388 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence              2336778888888887  44544 478888889999999999999999998764333321  2233332 24578999


Q ss_pred             HHHHHHHHhC-CCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 037256          467 YEAFDMIKQM-PLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKP  545 (680)
Q Consensus       467 ~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~  545 (680)
                      ++|++.+++. .+.|+...+...+..    .+..+++.++.+|+++.++..|+.+|...|++++|++.+++..+.+-..+
T Consensus       389 ~~Ai~~y~kal~i~~~~~~~~~~~~~----l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          389 DKAIHHFIEGVKINQKSREKEKMKDK----LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCHHHHHHHHH----HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            9999999876 677776655443333    35566778889999999999999999999999999999999988765544


Q ss_pred             CceeEE
Q 037256          546 AAFSVI  551 (680)
Q Consensus       546 ~~~s~~  551 (680)
                      ...+|+
T Consensus       465 ~a~~~~  470 (472)
T 4g1t_A          465 SASSWN  470 (472)
T ss_dssp             ------
T ss_pred             cHhhcC
Confidence            555554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.3e-15  Score=154.67  Aligned_cols=285  Identities=15%  Similarity=0.026  Sum_probs=197.1

Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHH
Q 037256          141 FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSV  217 (680)
Q Consensus       141 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  217 (680)
                      .+.+..++..+...+...|++++|.++|+++..   .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            356777888889999999999999999998753   356678888899999999999999999998863 3456677777


Q ss_pred             HHHHhccC-ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 037256          218 ASAVGQLG-DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQA  293 (680)
Q Consensus       218 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~  293 (680)
                      ...+...| ++++|...+..+++.. +.+...+..+...|...|++++|...|++..+   .+...+..+...|...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            78888888 8888888888887764 33556677777777777777777777776643   2345666677777777777


Q ss_pred             hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          294 SEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      ++|.+.|++..+.. +.+.                                   .++..+...|.+.|++++|...|++.
T Consensus       176 ~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDP-----------------------------------FVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCh-----------------------------------HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            77777777766542 2233                                   34444445555555555555555444


Q ss_pred             CCC----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          374 HPS----------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       374 ~~~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      ...          ..+..+|..+...|...|++++|+..|++..+.  .| +...+..+...+...|++++|.+.|+++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            111          223456777777777777888888777777774  34 34567777777777888888888887776


Q ss_pred             hcCCCcChHHHHHHHHHH-HhcCCH
Q 037256          443 KLSVKPEVKHYACMVDML-GRAGCL  466 (680)
Q Consensus       443 ~~~~~p~~~~~~~li~~~-~~~g~~  466 (680)
                      +.. +.+...+..+..++ ...|+.
T Consensus       298 ~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          298 GLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             ccC-CCchHHHHHHHHHHHHHhCch
Confidence            543 33555666666666 344443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.75  E-value=1.5e-14  Score=156.04  Aligned_cols=350  Identities=11%  Similarity=0.023  Sum_probs=229.2

Q ss_pred             CcchHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCch
Q 037256           74 YSFLWNTMIRAYAN----NGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS----NSLILEGKVVHGDIIRTGFLSDS  145 (680)
Q Consensus        74 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~  145 (680)
                      +..++..+...|..    .+++++|+..|++..+.|   +...+..|-..+..    .++.++|...+....+.|   ++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            55667777777776    778888888888877764   44566666666666    778888888888877765   45


Q ss_pred             hHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCccHHHHHHHHHHHcCCCCCHhHHHH
Q 037256          146 YVQAALVDMYAK----CGQTDDGCKVFDEMSVR-DLVSWTVMITAYEQ----AEKPEEALILFQKTQQEGLLSDSVTIVS  216 (680)
Q Consensus       146 ~~~~~Li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~  216 (680)
                      ..+..|..+|..    .++.++|.+.|++..+. +..++..|...|..    .+++++|++.|++..+.|   +...+..
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~  188 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ  188 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            566667777776    67788888887765433 55667777777766    677778888887777654   4555666


Q ss_pred             HHHHHhc----cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHH
Q 037256          217 VASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGY  287 (680)
Q Consensus       217 ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~  287 (680)
                      +...+..    .++.++|...+....+.|   +...+..|..+|..    .++.++|...|++..+ .+..++..+...|
T Consensus       189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y  265 (490)
T 2xm6_A          189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6666655    677777777777777654   44556666667765    6777777777776544 3556666666666


Q ss_pred             HH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh-----cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          288 IQ----NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL-----GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       288 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      ..    .++.++|+..|++..+.|   +...+..+...+...     ++.++|...+....+.+   +...+..+..+|.
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~  339 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF  339 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence            66    677777777777776554   333444455555544     66677777776666654   3445555666666


Q ss_pred             HcC---CHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 037256          359 KCG---DLDTAENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----  427 (680)
Q Consensus       359 k~g---~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----  427 (680)
                      +.|   ++++|.+.|++... ..+...+..|...|..    .+++++|++.|++..+.|   +...+..+...|..    
T Consensus       340 ~~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          340 RLGSEEEHKKAVEWFRKAAA-KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             HSCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred             hCCCcccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCC
Confidence            545   56666666666532 2455666666666666    566677777776666644   34455555555555    


Q ss_pred             cCCHHHHHHHHHHhhhcC
Q 037256          428 AGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       428 ~g~~~~a~~~~~~m~~~~  445 (680)
                      .+++++|...|++..+.+
T Consensus       416 ~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          416 ERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC
Confidence            566677777776666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=2.4e-13  Score=153.92  Aligned_cols=447  Identities=14%  Similarity=0.114  Sum_probs=311.7

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-----YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISS  108 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  108 (680)
                      ++.-.+..+..|.. .      |.+.+|.++++++... |     +....|.++.+..+. +..+..+..++...     
T Consensus       984 ~PeeVs~~vKaf~~-a------glp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----- 1049 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMT-A------DLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----- 1049 (1630)
T ss_pred             CHHHhHHHHHHHHh-C------CCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----
Confidence            44444555566665 5      7777777777777632 1     223455566666555 34555555544431     


Q ss_pred             CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 037256          109 NSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQ  188 (680)
Q Consensus       109 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  188 (680)
                        ....-+...|...|.+++|.++|+...     ......+.++   -..|++++|.++.++..  +..+|..+..++.+
T Consensus      1050 --~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A         1050 --YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred             --ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Confidence              123345666778888888888887641     1122223332   26788999999888774  46788899999999


Q ss_pred             CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 037256          189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLV  268 (680)
Q Consensus       189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~  268 (680)
                      .|++++|++.|.+.      -|...|..++.+|.+.|+++++.+.+....+..  +++.+.+.++.+|++.+++++...+
T Consensus      1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence            99999999999663      467788889999999999999999999888765  4444455699999999999865544


Q ss_pred             HHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchH
Q 037256          269 FDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDAT  348 (680)
Q Consensus       269 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~  348 (680)
                      .   ..++...|..+...|...|++++|..+|...         ..|..+...+.+.|+++.|.+.++..      .+..
T Consensus      1190 I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A         1190 I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred             H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence            3   4556677888899999999999999999885         37889999999999999999998876      4668


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH--
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSAC--  425 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~--  425 (680)
                      +|..+..++...|++..|......+   ..+...+..++..|...|.+++|+.+++....  +.|... .|+-+...+  
T Consensus      1252 aWkev~~acve~~Ef~LA~~cgl~I---iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1252 TWKEVCFACVDGKEFRLAQMCGLHI---VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhh---hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence            8888889999999999998877643   34556677899999999999999999987775  555543 554444444  


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCc------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--------------CCCCHhHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKP------EVKHYACMVDMLGRAGCLYEAFDMIKQMP--------------LPPNDSVW  485 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------~~p~~~~~  485 (680)
                      .+.+++.++.++|..-.  +++|      +...|.-++-.|.+.|+++.|...+-+-+              ...|...|
T Consensus      1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~ely 1404 (1630)
T 1xi4_A         1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 1404 (1630)
T ss_pred             CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHH
Confidence            45556666666666322  4444      56779999999999999999985543331              12244444


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          486 GALLLACRIHGEIAANYLFQ-LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       486 ~~ll~a~~~~~~~~~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      .-.+.-|..+....+..++. +.|.  --+.....++.+.|.+.-+..+++......
T Consensus      1405 ykai~Fyl~~~P~~lndLl~~l~~r--lD~~R~V~l~~~~~~l~lik~yl~~vq~~n 1459 (1630)
T 1xi4_A         1405 YRAIQFYLEFKPLLLNDLLMVLSPR--LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 1459 (1630)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhhhc--CChHHHHHHHHHcCChHHhHHHHHHHHHhc
Confidence            44444444432223332222 3232  223455667777888877777777766544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=1.5e-14  Score=157.72  Aligned_cols=409  Identities=9%  Similarity=0.017  Sum_probs=225.1

Q ss_pred             CCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 037256           71 DKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA  149 (680)
Q Consensus        71 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  149 (680)
                      ..| |..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|+.+++..  |+...|.
T Consensus         8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~   83 (530)
T 2ooe_A            8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK   83 (530)
T ss_dssp             HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred             hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence            355 6778988888 477899999999999998753 2255678888888888899999999999888764  5666777


Q ss_pred             HHHHH-HHhcCChHHHHH----HHhcCC------CCChhHHHHHHHHHHh---------CCCccHHHHHHHHHHHcCCCC
Q 037256          150 ALVDM-YAKCGQTDDGCK----VFDEMS------VRDLVSWTVMITAYEQ---------AEKPEEALILFQKTQQEGLLS  209 (680)
Q Consensus       150 ~Li~~-~~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p  209 (680)
                      .++.. ....|+.++|.+    +|+...      ..+...|...+....+         .|++++|..+|++.++.   |
T Consensus        84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P  160 (530)
T 2ooe_A           84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P  160 (530)
T ss_dssp             HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence            66643 335677776655    555431      1345667776665544         56677777777777662   2


Q ss_pred             CH---hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------
Q 037256          210 DS---VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM-------ME------  273 (680)
Q Consensus       210 ~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~------  273 (680)
                      +.   ..|..........+. .                   +...++.  .+.++++.|..++..       +.      
T Consensus       161 ~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~  218 (530)
T 2ooe_A          161 MINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSV  218 (530)
T ss_dssp             CTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             hhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            21   122111110000000 0                   0011110  012334445444433       11      


Q ss_pred             CCC--------hhHHHHHHHHHHHc----CCh----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh-------hcchH-
Q 037256          274 KRD--------LISWNSMLTGYIQN----GQA----SEALLLFDEMQNSDCKPNPVTALILVSACTY-------LGSRQ-  329 (680)
Q Consensus       274 ~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-  329 (680)
                      .|+        ...|...+.....+    ++.    .+|..+|++..... +-+...|......+.+       .|+++ 
T Consensus       219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~  297 (530)
T 2ooe_A          219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN  297 (530)
T ss_dssp             CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence            011        23444444322221    121    25555666655431 2234444444444433       45554 


Q ss_pred             ------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-H-hHHHHHHHHHHhcCChHHHHH
Q 037256          330 ------LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-V-SSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       330 ------~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~  401 (680)
                            .|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++....|+ . ..|..++..+.+.|+.++|.+
T Consensus       298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~  377 (530)
T 2ooe_A          298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  377 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence                  56666666554222344566666666666666666666666665433343 2 356666666666666666666


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHH-HHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 037256          402 FFSQMLEEGVKPD-HITFTSILSA-CSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP  479 (680)
Q Consensus       402 l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  479 (680)
                      +|++..+.  .|+ ...|...... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.   
T Consensus       378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a---  451 (530)
T 2ooe_A          378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV---  451 (530)
T ss_dssp             HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH---
T ss_pred             HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH---
Confidence            66666552  232 1222221111 224566666666666655542 223555666666666666666666666543   


Q ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCc----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          480 PNDSVWGALLLACRIHGEIAANYLFQLEPEHTG----YFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       480 p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                                              ++..|.++.    .+...+......|+.+.+.++.+++.+
T Consensus       452 ------------------------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          452 ------------------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             ------------------------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             ------------------------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                    344443333    555556667778888888888888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=7.3e-15  Score=160.14  Aligned_cols=401  Identities=11%  Similarity=0.073  Sum_probs=245.1

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT  112 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  112 (680)
                      ++.+|..++. +.+ .      |++++|+.+|+.+....| +...|...+..+.+.|++++|..+|+++...  .|+...
T Consensus        12 ~~~~w~~l~~-~~~-~------~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~l   81 (530)
T 2ooe_A           12 DLDAWSILIR-EAQ-N------QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDL   81 (530)
T ss_dssp             CHHHHHHHHH-HHH-S------SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHH
T ss_pred             CHHHHHHHHH-HHH-h------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHH
Confidence            5667777776 766 6      999999999999999988 5668999999999999999999999999876  367666


Q ss_pred             HHHHHHHH-hccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-CC
Q 037256          113 FPFVLKAC-ASNSLILEGKV----VHGDIIRT-GFLS-DSYVQAALVDMYAK---------CGQTDDGCKVFDEMSV-RD  175 (680)
Q Consensus       113 ~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~~~~---------~g~~~~A~~~f~~~~~-~~  175 (680)
                      |...+... ...|+.+.|++    +|+..++. |..| +...|...+....+         .|+++.|.++|++... |+
T Consensus        82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~  161 (530)
T 2ooe_A           82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM  161 (530)
T ss_dssp             HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence            76666533 34567766655    77777654 5444 46778888877655         7899999999998654 22


Q ss_pred             h---hHHHHHHHHHH-------------hCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256          176 L---VSWTVMITAYE-------------QAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC  239 (680)
Q Consensus       176 ~---~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  239 (680)
                      .   ..|........             +.+++.+|..++.++...                             ....+
T Consensus       162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----------------------------~~~l~  212 (530)
T 2ooe_A          162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV-----------------------------MKGLD  212 (530)
T ss_dssp             TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH-----------------------------HHHCC
T ss_pred             hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------------------HHHhc
Confidence            1   23333222110             112233333333331100                             00001


Q ss_pred             cc---CCCC--------hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChhHHHHHHHHHHH-------c
Q 037256          240 NA---FLED--------LCIQNSIVAMYARC----GNV----EKARLVFDMMEK---RDLISWNSMLTGYIQ-------N  290 (680)
Q Consensus       240 ~g---~~~~--------~~~~~~Li~~y~~~----g~~----~~A~~~f~~m~~---~~~~~~~~li~~~~~-------~  290 (680)
                      ..   ++|+        ...|...+..-...    ++.    +.|..+|++...   .++..|...+..+.+       .
T Consensus       213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~  292 (530)
T 2ooe_A          213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK  292 (530)
T ss_dssp             SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhc
Confidence            00   1111        12222222221111    111    244445554432   245566666655554       4


Q ss_pred             CChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHcCC
Q 037256          291 GQAS-------EALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID-ATLRNAVMDMYAKCGD  362 (680)
Q Consensus       291 g~~~-------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~y~k~g~  362 (680)
                      |+++       +|..+|++..+.-.+-+...+..+...+...|+++.|..+++.+++.. +.+ ..+|..++..+.+.|+
T Consensus       293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence            6655       666666666642112235555666666666677777777777766643 112 2467777777777777


Q ss_pred             HHHHHHHHhhcCCCCCC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 037256          363 LDTAENMFNDIHPSERN-VSSWNVLIA-GYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFA  439 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~  439 (680)
                      +++|.++|++.....|+ ...|...+. .+...|+.++|..+|++..+.  .|+ ...|..++....+.|+.++|..+|+
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            78888887777444332 222222111 233578888888888887773  454 4577777777778888888888888


Q ss_pred             Hhhhc-CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          440 DMTKL-SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       440 ~m~~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +.... ...|+  ...|...+....+.|+.+.+.++.+++
T Consensus       450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88775 23332  446777777777788888887777665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.73  E-value=3.2e-16  Score=162.12  Aligned_cols=281  Identities=11%  Similarity=0.033  Sum_probs=189.4

Q ss_pred             hcCChHHHHH-HHhcCCC---C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH
Q 037256          157 KCGQTDDGCK-VFDEMSV---R----DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL  228 (680)
Q Consensus       157 ~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  228 (680)
                      ..|++++|.. .|++...   .    +...|..+...+.+.|++++|+..|+++.+..                      
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------   94 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----------------------   94 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence            3456666665 5554321   1    23445566666666666666666666665542                      


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                                    +.+..++..+..+|.+.|++++|.+.|+++.+   .+..+|..+...|...|++++|++.|+++.+
T Consensus        95 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  160 (368)
T 1fch_A           95 --------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR  160 (368)
T ss_dssp             --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                          22333444455555555555555555554432   3455666666666666666666666666665


Q ss_pred             CCCCCCHhhHHH---------------HHHHHhhhcchHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHcCCHHHHHHH
Q 037256          306 SDCKPNPVTALI---------------LVSACTYLGSRQLGRKFHGYIINSNMKI-DATLRNAVMDMYAKCGDLDTAENM  369 (680)
Q Consensus       306 ~g~~p~~~t~~~---------------ll~a~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~  369 (680)
                      .... +...+..               .+..+...|++++|...+..+.+..... +..++..+...|.+.|++++|...
T Consensus       161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~  239 (368)
T 1fch_A          161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC  239 (368)
T ss_dssp             TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4311 1111110               2333448899999999999988875332 688899999999999999999999


Q ss_pred             HhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--
Q 037256          370 FNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS--  445 (680)
Q Consensus       370 f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--  445 (680)
                      |+++....| +..+|..+...|...|++++|+..|+++.+.  .|+ ..++..+..++...|++++|...|+++.+..  
T Consensus       240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            998854444 5788999999999999999999999999984  454 5688889999999999999999999988752  


Q ss_pred             C-C-------cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          446 V-K-------PEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       446 ~-~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      . .       .....|..+..+|.+.|+.++|..++++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            1 1       12678999999999999999999988743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=1.3e-13  Score=155.93  Aligned_cols=374  Identities=13%  Similarity=0.108  Sum_probs=281.6

Q ss_pred             cHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 037256          112 TFPFVLKACASNSLILEGKVVHGDIIRTG--FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQA  189 (680)
Q Consensus       112 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~  189 (680)
                      --...++++...|...++.++++.++-.+  +..+....+.|+.+..+. +..+..+..++...-+   ...+...+...
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence            34667788889999999999999888332  123456667777777666 5566666655554323   44577888899


Q ss_pred             CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256          190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF  269 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f  269 (680)
                      |.+++|..+|++..     -.......++.   ..+++++|.++.+.+      .+..+|..+..++.+.|++++|.+.|
T Consensus      1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred             CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999852     11222233322   667888888887754      45788899999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHH
Q 037256          270 DMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATL  349 (680)
Q Consensus       270 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~  349 (680)
                      .+.  .|...|..++..+.+.|++++|++.|...++..  +++...+.+..+|++.++++....+.    +   .++...
T Consensus      1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A         1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred             Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence            764  678888899999999999999999998877654  33333445888899998888644442    1   345566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG  429 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g  429 (680)
                      +..+.+.|...|++++|...|...       ..|..+...|.+.|++++|.+.+++.      -+..+|..+-.+|...|
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence            777999999999999999999986       48999999999999999999999876      35688999999999999


Q ss_pred             CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHH-------HHHHH
Q 037256          430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS-VWGALLLACRIH-------GEIAA  500 (680)
Q Consensus       430 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~-------~~~~~  500 (680)
                      ++..|......     +..+...+..++..|.+.|.+++|+.+++.. ++.|... .|.-|...+.+.       ..+.+
T Consensus      1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A         1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred             HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99998887653     3456777889999999999999999999775 6655443 454444555544       22223


Q ss_pred             HHHHccCC-----CCCchHHHHHHHHHhcCChhHHHH
Q 037256          501 NYLFQLEP-----EHTGYFVLMSNIYAASNKWREVGK  532 (680)
Q Consensus       501 ~~~~~l~p-----~~~~~~~~l~~~~~~~g~~~~A~~  532 (680)
                      ..-..+.|     .+...+.-++-+|.+.|+|+.|..
T Consensus      1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            33333444     566778899999999999999985

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=9e-14  Score=149.90  Aligned_cols=358  Identities=11%  Similarity=0.051  Sum_probs=282.6

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHH
Q 037256           94 TLELYSTMRRSGISSNSYTFPFVLKACAS----NSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK----CGQTDDGC  165 (680)
Q Consensus        94 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~  165 (680)
                      +++.+++..+.|   +...+..+-..+..    .+++++|...+....+.|   ++..+..|...|..    .++.++|.
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            455565555543   55666666666666    789999999999998875   56677888888888    89999999


Q ss_pred             HHHhcCCC-CChhHHHHHHHHHHh----CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHH
Q 037256          166 KVFDEMSV-RDLVSWTVMITAYEQ----AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ----LGDVLKAQAVHGY  236 (680)
Q Consensus       166 ~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~  236 (680)
                      +.|++..+ .+..++..|...|..    .+++++|++.|++..+.|   +...+..+...+..    .++.++|.+.+..
T Consensus       100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  176 (490)
T 2xm6_A          100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK  176 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            99988754 367788888888888    789999999999988875   45666667666765    7899999999999


Q ss_pred             HHHccCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 037256          237 AICNAFLEDLCIQNSIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGYIQ----NGQASEALLLFDEMQNSD  307 (680)
Q Consensus       237 ~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  307 (680)
                      ..+.|   +...+..|..+|..    .++.++|.+.|++..+ .+..++..+...|..    .+++++|..+|++..+.|
T Consensus       177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  253 (490)
T 2xm6_A          177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG  253 (490)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred             HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            88875   67788888888888    8999999999988754 467778888888886    789999999999988765


Q ss_pred             CCCCHhhHHHHHHHHhh----hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc-----CCHHHHHHHHhhcCCCCC
Q 037256          308 CKPNPVTALILVSACTY----LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC-----GDLDTAENMFNDIHPSER  378 (680)
Q Consensus       308 ~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~~~~~  378 (680)
                         +...+..+...+..    .++.++|...++...+.|   +...+..|..+|...     +++++|...|++... ..
T Consensus       254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~  326 (490)
T 2xm6_A          254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG  326 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT
T ss_pred             ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC
Confidence               44455566666665    788999999999888765   456777788888887     899999999988733 34


Q ss_pred             CHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCCCcChH
Q 037256          379 NVSSWNVLIAGYGMHG---HGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSVKPEVK  451 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~p~~~  451 (680)
                      +...+..+...|...|   +.++|++.|++..+.|   +...+..+...|..    .+++++|.+.|++..+.+   +..
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~  400 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA  400 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence            5677788888887766   7889999999988864   56677777777777    789999999999988765   466


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHhC
Q 037256          452 HYACMVDMLGR----AGCLYEAFDMIKQM  476 (680)
Q Consensus       452 ~~~~li~~~~~----~g~~~~A~~~~~~m  476 (680)
                      .+..|..+|.+    .+++++|.+.|++.
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            77778888887    78999999888875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.72  E-value=5.5e-16  Score=160.38  Aligned_cols=278  Identities=10%  Similarity=0.012  Sum_probs=150.5

Q ss_pred             CCCchHHHH-HHHHHHhCCC---CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 037256           88 NGHCVETLE-LYSTMRRSGI---SSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDD  163 (680)
Q Consensus        88 ~g~~~~A~~-~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~  163 (680)
                      .|++++|++ .|++......   ..+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            466777777 6665543221   1134556677777777778888888877777764 4456677777777778888888


Q ss_pred             HHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHH---------------HHHHHhcc
Q 037256          164 GCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVS---------------VASAVGQL  224 (680)
Q Consensus       164 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~  224 (680)
                      |...|+++.   ..+..+|..+...|...|++++|++.|+++....  |+.. .+..               .+..+...
T Consensus       117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            887777653   3366677888888888888888888888877653  2221 1111               11122244


Q ss_pred             CChHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHH
Q 037256          225 GDVLKAQAVHGYAICNAFLE-DLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLF  300 (680)
Q Consensus       225 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~  300 (680)
                      |++++|...+..+++..... +..++..+...|.+.|++++|...|+++.+   .+..+|..+...+.+.|++++|+..|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555554443211 344444455555555555555555544331   23344444555555555555555555


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC--
Q 037256          301 DEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER--  378 (680)
Q Consensus       301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~--  378 (680)
                      +++.                                   +.. +.+..++..+..+|.+.|++++|...|+++....|  
T Consensus       275 ~~al-----------------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          275 RRAL-----------------------------------ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHH-----------------------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHH-----------------------------------HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            5444                                   332 23344455555555555555555555554422111  


Q ss_pred             ----------CHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256          379 ----------NVSSWNVLIAGYGMHGHGRKALEFFS  404 (680)
Q Consensus       379 ----------~~~~~~~li~~~~~~g~~~~A~~l~~  404 (680)
                                ...+|..+..+|...|+.++|..+++
T Consensus       319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence                      14556666666666666666655554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.69  E-value=2.5e-17  Score=180.55  Aligned_cols=130  Identities=14%  Similarity=0.217  Sum_probs=112.6

Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256          343 MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP-----SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT  417 (680)
Q Consensus       343 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  417 (680)
                      ...-..+||+||++|+++|++++|.++|++|..     ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            344567899999999999999999999977632     378999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCC-HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256          418 FTSILSACSHAGL-IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       418 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  472 (680)
                      |+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....|.+-++...++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            9999999999997 578999999999999999999999999888776555544444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=3.9e-15  Score=153.90  Aligned_cols=262  Identities=13%  Similarity=0.074  Sum_probs=186.8

Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA  254 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  254 (680)
                      +...|..+...+.+.|++++|++.|+++.+..                                    +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~  107 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI  107 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence            44456666667777777777777777666542                                    223444555556


Q ss_pred             HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----------HhhHHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN-----------PVTALILVS  320 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~  320 (680)
                      +|.+.|++++|...|+++.+   .+..+|..+...|...|++++|+..|+++.+.  .|+           ...+..+..
T Consensus       108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC----------------
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHH
Confidence            66666666666666665542   34566777777777777777777777777653  222           122334466


Q ss_pred             HHhhhcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256          321 ACTYLGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK  398 (680)
Q Consensus       321 a~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~  398 (680)
                      .+...|++++|...++.+.+.... .+..++..+...|.+.|++++|.+.|+++....| +..+|+.+...|...|++++
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            778888899999999888877532 2688889999999999999999999998754444 57889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CC-C--------cChHHHHHHHHHHHhcCCH
Q 037256          399 ALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL--SV-K--------PEVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       399 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~-~--------p~~~~~~~li~~~~~~g~~  466 (680)
                      |+..|+++.+.  .|+ ..++..+..+|...|++++|...|+++.+.  .. .        .+...|..+..++...|+.
T Consensus       266 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          266 AVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            99999999984  565 568888999999999999999999998875  11 1        1367889999999999999


Q ss_pred             HHHHHHHHhC
Q 037256          467 YEAFDMIKQM  476 (680)
Q Consensus       467 ~~A~~~~~~m  476 (680)
                      +.|.+..++-
T Consensus       344 ~~a~~~~~~~  353 (365)
T 4eqf_A          344 ELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhh
Confidence            9999888764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=1.4e-15  Score=157.34  Aligned_cols=271  Identities=11%  Similarity=-0.031  Sum_probs=193.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 037256          144 DSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASA  220 (680)
Q Consensus       144 ~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  220 (680)
                      +...+..+...+.+.|++++|...|+++.   ..+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            34558888999999999999999999875   3477899999999999999999999999998763 3346667777777


Q ss_pred             HhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 037256          221 VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF  300 (680)
Q Consensus       221 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~  300 (680)
                      +...|++++|...+..+++.... +...+..+.                     .....+..+...+.+.|++++|+..|
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY  200 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence            77777777777777776664311 111111110                     01223344556666777777777777


Q ss_pred             HHHHhCCCC-CCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-
Q 037256          301 DEMQNSDCK-PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-  378 (680)
Q Consensus       301 ~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-  378 (680)
                      +++.+.... ++..++..+...+...|++++|...++.+.+.. +.+..+++.+..+|.+.|++++|.+.|+++....| 
T Consensus       201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            777665311 146667777777777777777777777777654 45677888889999999999999999988754445 


Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-------------HITFTSILSACSHAGLIDEGRKCFAD  440 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~  440 (680)
                      +..+|..+...|...|++++|...|+++.+.  .|+             ...|..+..++...|+.+.+..+..+
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            4778999999999999999999999998873  332             46788888999999999988887765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.67  E-value=3.4e-14  Score=141.48  Aligned_cols=248  Identities=10%  Similarity=0.031  Sum_probs=195.3

Q ss_pred             HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          255 MYARCGNVEKARLVFDMMEKRDL----ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      -....|+++.|...++.....++    .....+..+|...|++++|+..++.   . -+|+..++..+...+...++.+.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence            34567888888888887765432    2445567888899999888876654   1 35677788888888888888999


Q ss_pred             HHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          331 GRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       331 a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                      |.+.++.+...+. +.+...+..+..+|.+.|++++|.+.|++    ..+...+..++..|.+.|+.++|.+.|+++.+.
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            9999988887764 44667777888999999999999999988    467788999999999999999999999999985


Q ss_pred             CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHH
Q 037256          410 GVKPDHITF---TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWG  486 (680)
Q Consensus       410 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~  486 (680)
                        .|+....   ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++.          
T Consensus       160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a----------  226 (291)
T 3mkr_A          160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA----------  226 (291)
T ss_dssp             --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred             --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence              5765321   12233444568999999999999987 3678889999999999999999999888764          


Q ss_pred             HHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 037256          487 ALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE-VGKLREDMKNK  540 (680)
Q Consensus       487 ~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~  540 (680)
                                       ++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus       227 -----------------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          227 -----------------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             -----------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -----------------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence                             45678888888888888888888876 46777777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.66  E-value=2.3e-14  Score=145.23  Aligned_cols=264  Identities=13%  Similarity=0.022  Sum_probs=186.9

Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA  254 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  254 (680)
                      +...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+++.. +           
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~-----------   86 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P-----------   86 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-----------
Confidence            33455666667777777777777777766542 2233344444444444444444444444444332 1           


Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-hhHHHH--------------H
Q 037256          255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-VTALIL--------------V  319 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------l  319 (680)
                                          .+..+|..+...|...|++++|++.|+++.+..  |+. ..+..+              .
T Consensus        87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  144 (327)
T 3cv0_A           87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE  144 (327)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred             --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence                                244555566666666666666666666665542  221 112111              2


Q ss_pred             H-HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChH
Q 037256          320 S-ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGR  397 (680)
Q Consensus       320 ~-a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~  397 (680)
                      . .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++....| +..+|..+...|...|+++
T Consensus       145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence            2 3778889999999999988876 44788899999999999999999999998854444 5788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc-----------ChHHHHHHHHHHHhcCC
Q 037256          398 KALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKP-----------EVKHYACMVDMLGRAGC  465 (680)
Q Consensus       398 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~  465 (680)
                      +|++.|+++.+.  .| +..++..+...+...|++++|.+.++++.+.....           +...|..+..++.+.|+
T Consensus       224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (327)
T 3cv0_A          224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR  301 (327)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence            999999999884  44 45688889999999999999999999988763121           47788999999999999


Q ss_pred             HHHHHHHHHhC
Q 037256          466 LYEAFDMIKQM  476 (680)
Q Consensus       466 ~~~A~~~~~~m  476 (680)
                      +++|..++++.
T Consensus       302 ~~~A~~~~~~~  312 (327)
T 3cv0_A          302 PDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=1e-13  Score=148.57  Aligned_cols=372  Identities=9%  Similarity=-0.030  Sum_probs=193.5

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRS-----G--ISS-NSYTFPFVLKACASNSLILEGKVVHGDIIRTG-----  140 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----  140 (680)
                      ....||.|...+...|++++|++.|++..+.     +  ..| ...+|..+..++...|++++|...++.+++..     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3556888888888899999999998876541     1  122 23567777778888888888888887776531     


Q ss_pred             -C-CCchhHHHHHHHHHHhc--CChHHHHHHHhcCC--CC-ChhHHHHHHHH---HHhCCCccHHHHHHHHHHHcCCCCC
Q 037256          141 -F-LSDSYVQAALVDMYAKC--GQTDDGCKVFDEMS--VR-DLVSWTVMITA---YEQAEKPEEALILFQKTQQEGLLSD  210 (680)
Q Consensus       141 -~-~~~~~~~~~Li~~~~~~--g~~~~A~~~f~~~~--~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~  210 (680)
                       . .....+++.+..++.+.  +++++|...|++..  .| +...+..+...   +...++.++|++.|++..+.. +.+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence             0 11234455444444443  35677777777654  22 34444444433   334566677777777766543 223


Q ss_pred             HhHHHHHHHHHh----ccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 037256          211 SVTIVSVASAVG----QLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSM  283 (680)
Q Consensus       211 ~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~l  283 (680)
                      ...+..+...+.    ..++.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+   .+..+|..+
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  287 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI  287 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence            333433333332    2344556666666655543 33444555566666666666666666655432   233444444


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCH
Q 037256          284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDL  363 (680)
Q Consensus       284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~  363 (680)
                      ...|...+....+         .. .      ..........+..+.|...+....+.. +.+...+..+..+|.+.|++
T Consensus       288 g~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~  350 (472)
T 4g1t_A          288 GCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY  350 (472)
T ss_dssp             HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence            4443221110000         00 0      000000111223455666666665544 33455566677777777777


Q ss_pred             HHHHHHHhhcCCCCCCHhH----HHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256          364 DTAENMFNDIHPSERNVSS----WNVLIA-GYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       364 ~~A~~~f~~~~~~~~~~~~----~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      ++|.+.|++.....++...    +..+.. .+.+.|+.++|+..|++..+  +.|+.......         ...+.+++
T Consensus       351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~  419 (472)
T 4g1t_A          351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIA  419 (472)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHH
Confidence            7777777766443443322    222222 23456777777777777776  55654332222         22333444


Q ss_pred             HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +...+.. +.+...|..+...|...|++++|++.|++.
T Consensus       420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA  456 (472)
T 4g1t_A          420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERG  456 (472)
T ss_dssp             HHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4444332 445666777777777777777777777665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=8.2e-14  Score=138.70  Aligned_cols=250  Identities=11%  Similarity=0.012  Sum_probs=169.6

Q ss_pred             HhcCChHHHHHHHhcCCCCCh----hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256          156 AKCGQTDDGCKVFDEMSVRDL----VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ  231 (680)
Q Consensus       156 ~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  231 (680)
                      ...|++..|+..++.....+.    .....+.++|...|++++|+..++.    .-+|+..++..+...+...++.++|.
T Consensus        10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence            345667777776665544322    2334456677777777777665543    12445556666666677777777777


Q ss_pred             HHHHHHHHccC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256          232 AVHGYAICNAF-LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP  310 (680)
Q Consensus       232 ~~~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (680)
                      +.++.++..+. +.+...+..+...|.+.|++++|.+.|++  ..+...+..++..|.+.|++++|.+.|+++.+..  |
T Consensus        86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p  161 (291)
T 3mkr_A           86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E  161 (291)
T ss_dssp             HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence            77777766653 33455666777889999999999999998  4678889999999999999999999999998763  5


Q ss_pred             CHhhHHHHH----HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHH
Q 037256          311 NPVTALILV----SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNV  385 (680)
Q Consensus       311 ~~~t~~~ll----~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~  385 (680)
                      +.. ...+.    ..+...|++++|..+++.+.+.. +.+..+++.+..+|.+.|++++|.+.|++.....| +..+|..
T Consensus       162 ~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          162 DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            432 22222    22334477777777777777663 55677777777777777777777777777644444 4666777


Q ss_pred             HHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHH
Q 037256          386 LIAGYGMHGHGRK-ALEFFSQMLEEGVKPDHIT  417 (680)
Q Consensus       386 li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t  417 (680)
                      ++..+...|+.++ +.++++++.+  +.|+...
T Consensus       240 l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~  270 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF  270 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence            7777777777654 4567777776  4566543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.64  E-value=5.8e-16  Score=169.89  Aligned_cols=146  Identities=12%  Similarity=0.049  Sum_probs=124.0

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQML---EEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACM  456 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  456 (680)
                      ..+||+||.+|++.|+.++|.++|++|.   ..|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            5689999999999999999999998876   4589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH-HHHHHHHHhC---CCCCCHhHHHHHHHHHHHH-HHHHHHHHHc-cCCC-----CCchHHHHHHHHHhcC
Q 037256          457 VDMLGRAGCL-YEAFDMIKQM---PLPPNDSVWGALLLACRIH-GEIAANYLFQ-LEPE-----HTGYFVLMSNIYAASN  525 (680)
Q Consensus       457 i~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~-~~~~~~~~~~-l~p~-----~~~~~~~l~~~~~~~g  525 (680)
                      |+++++.|+. ++|.++|++|   ++.||.++|++++.++.+. ..++.+++.. +.|+     ...+..+|-++|++.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999999985 7899999999   8999999999999888766 3334444321 2222     1233446788888766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.63  E-value=6.7e-14  Score=141.76  Aligned_cols=274  Identities=11%  Similarity=-0.007  Sum_probs=145.4

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256           74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD  153 (680)
Q Consensus        74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~  153 (680)
                      +...|..+...+...|++++|+.+|+++.+..+ .+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            344566677777777777777777777766532 244556666666666777777777777666653 234444555555


Q ss_pred             HHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHH--HHhccCChH
Q 037256          154 MYAKCGQTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVAS--AVGQLGDVL  228 (680)
Q Consensus       154 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~  228 (680)
                      .|...|++++|.+.|+++...   +...+..+...                      .|+......+..  .+...|+++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            555555555555555443211   11111111000                      000000111102  245556666


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      +|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+   .+..+|..+...+...|++++|...|+++.+
T Consensus       156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  234 (327)
T 3cv0_A          156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD  234 (327)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666554 33555666666666777777777666666542   3455666666667777777777777766655


Q ss_pred             CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC-----------chHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKI-----------DATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~-----------~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      .. +.+..++..+...+...|++++|...++.+.+.....           +..++..+..+|.+.|+.++|..++++.
T Consensus       235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            42 2234445555555555555555555555554432111           3444455555555555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.1e-13  Score=131.67  Aligned_cols=224  Identities=12%  Similarity=0.069  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCC--Cc----hHHHH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMK--ID----ATLRN  351 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~--~~----~~~~~  351 (680)
                      ..|..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|...+..+.+....  ++    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            345556666666677777777776666554  55556666666666666666666666666543211  11    46777


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 037256          352 AVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL  430 (680)
Q Consensus       352 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~  430 (680)
                      .+...|.+.|++++|.+.|++.....|+.       ..+...|++++|...++++..  ..|+. ..+..+...+...|+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence            78888888888888888888774445553       345566778888888888887  45554 467777778888888


Q ss_pred             HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256          431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH  510 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~  510 (680)
                      +++|...++++.+.. +.+...|..+...|.+.|++++|.+.+++.                           +++.|++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------------l~~~~~~  206 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------------------IEKDPNF  206 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HHHCTTC
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------------HHhCHHH
Confidence            888888888888764 445677888888888888888888877653                           4567888


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          511 TGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      +..+..++.+|...|++++|.+.+++..+.
T Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          207 VRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            888999999999999999999999988753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=2.2e-13  Score=129.45  Aligned_cols=195  Identities=14%  Similarity=0.076  Sum_probs=107.3

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD  355 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~  355 (680)
                      +...|..+...+.+.|++++|+..|++..+.. +                                   .+...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-----------------------------------~~~~a~~~lg~   47 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-P-----------------------------------QDPEALYWLAR   47 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-S-----------------------------------SCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----------------------------------CCHHHHHHHHH
Confidence            34455556666666666666666666665432 2                                   23333444444


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 037256          356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH-----------GHGRKALEFFSQMLEEGVKPDH-ITFTSIL  422 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll  422 (680)
                      .|.+.|++++|...|++.....| +...|..+...|...           |++++|+..|++..+  +.|+. ..+..+.
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg  125 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRG  125 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence            44444444444444444422222 234444455555555           667777777776666  34543 3566666


Q ss_pred             HHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 037256          423 SACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANY  502 (680)
Q Consensus       423 ~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~  502 (680)
                      .++...|++++|...|++..+..  .+...+..+..+|...|++++|+..+++                           
T Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------  176 (217)
T 2pl2_A          126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAK---------------------------  176 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------------
T ss_pred             HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------
Confidence            66677777777777777766655  5666666677777777777776666654                           


Q ss_pred             HHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256          503 LFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       503 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      +++++|+++..+..++.++...|++++|.+.+++.
T Consensus       177 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34567777777777888888888888877777654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=8.1e-13  Score=128.66  Aligned_cols=226  Identities=12%  Similarity=0.027  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC--ChhHHHHHHHH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE--DLCIQNSIVAM  255 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~  255 (680)
                      .|..+...+...|++++|++.|++..+..  .+...+..+...+...|++++|...+..+++.....  +..        
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------   76 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------   76 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence            45555666666666666666666665554  444455555555555555555555554444322110  000        


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHH
Q 037256          256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFH  335 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~  335 (680)
                                         .....|..+...|...|++++|+..|++..+.  .|+.       ..+...|+++++...+
T Consensus        77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA  128 (258)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence                               00345556666666666666666666666653  2332       2345556677777777


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256          336 GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD  414 (680)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  414 (680)
                      ..+.+.. +.+..++..+...|.+.|++++|.+.|++..... .+...|..+...|...|++++|+..|++..+.  .|+
T Consensus       129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~  205 (258)
T 3uq3_A          129 EAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPN  205 (258)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             HHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHH
Confidence            7666543 3355667777777888888888888887764433 34677788888888888888888888888774  344


Q ss_pred             -HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          415 -HITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       415 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                       ..++..+..++...|++++|.+.+++..+.
T Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          206 FVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence             457777777888888888888888877664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=2.9e-12  Score=126.05  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=168.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhh
Q 037256          250 NSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN--PVTALILVSACTY  324 (680)
Q Consensus       250 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~  324 (680)
                      ......+.+.|++++|...|++..+   .+...|..+...|...|++++|++.|++..+.+..|+  ...+..+...+..
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            3455666677777777777776543   2445677777778888888888888888776331222  2236777777788


Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHH-HHHHhcCChHHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLI-AGYGMHGHGRKALEF  402 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li-~~~~~~g~~~~A~~l  402 (680)
                      .|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.....| +...|..+. ..|. .+++++|++.
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~  164 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSS  164 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            888888888888887765 44667889999999999999999999999976655 567787777 5554 5699999999


Q ss_pred             HHHHHHcCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHhhhc-CCCcC------hHHHHHHHHHHHhcCCHHHHHH
Q 037256          403 FSQMLEEGVKPD-HITFTSILSACSHAGL---IDEGRKCFADMTKL-SVKPE------VKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       403 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~-~~~p~------~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      |++..+  ..|+ ...+..+...+...|+   +++|...++++.+. .-.|+      ...|..+...|.+.|++++|.+
T Consensus       165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998  4565 4577777888888888   88899999888775 22344      2578888999999999999998


Q ss_pred             HHHhC
Q 037256          472 MIKQM  476 (680)
Q Consensus       472 ~~~~m  476 (680)
                      .+++.
T Consensus       243 ~~~~a  247 (272)
T 3u4t_A          243 AWKNI  247 (272)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.50  E-value=5e-12  Score=134.29  Aligned_cols=343  Identities=13%  Similarity=0.073  Sum_probs=183.9

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCChhHHHHHHHHHHhCC--
Q 037256          116 VLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQT---DDGCKVFDEMSVRDLVSWTVMITAYEQAE--  190 (680)
Q Consensus       116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g--  190 (680)
                      +...+.+.|++++|.+++....+.|   ++..+..|..+|...|+.   ++|...|++..+.++..+..|...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            3444555667777777777776665   222333444555556666   67777777666556666666666454444  


Q ss_pred             ---CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH---HHHHHHHHHHHccCCCChhHHHHHHHHHHhcC----
Q 037256          191 ---KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL---KAQAVHGYAICNAFLEDLCIQNSIVAMYARCG----  260 (680)
Q Consensus       191 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----  260 (680)
                         ++++|++.|++..+.|...   .+..+...+...+..+   .+.+.+......|   +......|..+|...+    
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred             CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence               5667777777777655322   3334444443333222   2333333333333   2344455556666555    


Q ss_pred             CHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256          261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNG---QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY  337 (680)
Q Consensus       261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~  337 (680)
                      +.+.+..+++.....++.++..|...|.+.|   +.++|++.|++..+.| .++                          
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~--------------------------  212 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT--------------------------  212 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC--------------------------
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH--------------------------
Confidence            3444555555555555556666666666666   6666666666666554 223                          


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHc----CCHHHHHHHHhhcCCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcC
Q 037256          338 IINSNMKIDATLRNAVMDMYAKC----GDLDTAENMFNDIHPSERNVSSWNVLIAG-Y--GMHGHGRKALEFFSQMLEEG  410 (680)
Q Consensus       338 ~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g  410 (680)
                               ...+..|..+|...    +++++|.+.|++..  ..+...+..|... |  ...++.++|++.|++..+.|
T Consensus       213 ---------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          213 ---------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             ---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence                     23223344444333    56677777777764  3345556656555 3  35677888888888877765


Q ss_pred             CCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC
Q 037256          411 VKPDHITFTSILSACSHAG-----LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR----AGCLYEAFDMIKQMPLPPN  481 (680)
Q Consensus       411 ~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~  481 (680)
                         +...+..|...|. .|     ++++|.++|++.. .   -+...+..|..+|..    ..++++|.++|++.     
T Consensus       282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-----  348 (452)
T 3e4b_A          282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-----  348 (452)
T ss_dssp             ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-----
T ss_pred             ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-----
Confidence               4455555555555 44     7888888888776 3   345556666666655    33777777777654     


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 037256          482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA----SNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~  542 (680)
                                              .++.++.....|+.+|..    ..+.++|...+++..+.|.
T Consensus       349 ------------------------a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          349 ------------------------ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             ------------------------HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             ------------------------HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence                                    124456677777777764    4577888888888777664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=2.2e-12  Score=122.37  Aligned_cols=206  Identities=15%  Similarity=0.013  Sum_probs=129.6

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256          243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILV  319 (680)
Q Consensus       243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (680)
                      +++...+..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            56778889999999999999999999998765   367889999999999999999999999998753 33455555555


Q ss_pred             HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256          320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK  398 (680)
Q Consensus       320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~  398 (680)
                      .++...+..               ...         .+...|++++|...|++.....| +...|..+...|...|++++
T Consensus        81 ~~~~~~~~~---------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  136 (217)
T 2pl2_A           81 EAYVALYRQ---------------AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK  136 (217)
T ss_dssp             HHHHHHHHT---------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhhh---------------hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence            555554000               000         01122566666666665533333 35566666666667777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       399 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      |+..|++..+..  .+...+..+..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus       137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777777766654  455566666666777777777777777766643 334556666666777777777777666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.48  E-value=3.1e-12  Score=135.93  Aligned_cols=186  Identities=13%  Similarity=0.032  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc----CChhHHHHHHHHHHhCCCCCCHhhHHH
Q 037256          248 IQNSIVAMYARCG---NVEKARLVFDMMEK---RDLISWNSMLTGYIQN----GQASEALLLFDEMQNSDCKPNPVTALI  317 (680)
Q Consensus       248 ~~~~Li~~y~~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~  317 (680)
                      .+..|..+|.+.|   +.++|.+.|++..+   ++...+..+...|...    +++++|+..|++.. .|   +...+..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence            5555666666666   56666666655432   2233334455555433    56667777776665 32   2233333


Q ss_pred             HHHH-H--hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC-----CHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 037256          318 LVSA-C--TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG-----DLDTAENMFNDIHPSERNVSSWNVLIAG  389 (680)
Q Consensus       318 ll~a-~--~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g-----~~~~A~~~f~~~~~~~~~~~~~~~li~~  389 (680)
                      +... +  ...++.++|...+....+.|   +......|..+|. .|     ++++|.+.|++..  ..++..+..|...
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence            3333 2  34667777777777776665   5566666777776 45     8999999999885  5567777778777


Q ss_pred             HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCC
Q 037256          390 YGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSV  446 (680)
Q Consensus       390 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~  446 (680)
                      |..    ..+.++|...|++..+.|. |  .....|...|..    ..++++|..+|+...+.|.
T Consensus       328 y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          328 YRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             HHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            766    3488999999998888663 2  334444444543    4578888888888887763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=1e-12  Score=129.43  Aligned_cols=195  Identities=10%  Similarity=-0.089  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY  357 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y  357 (680)
                      .+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~  121 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence            344555555555555555555555555432 2234455555555555555555555555555443 33456666677777


Q ss_pred             HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 037256          358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      .+.|++++|.+.|+++....|+...+...+..+...|++++|...+++.... .+++...+ .++..+...++.++|...
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~  199 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMER  199 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHH
Confidence            7777777777777776444454443344444445567777777777776664 23333333 355566667777777777


Q ss_pred             HHHhhhcCCC--c-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          438 FADMTKLSVK--P-EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       438 ~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ++...+....  | +...+..+...|.+.|++++|.+.+++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7776654211  1 1466777777777788888877777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=2e-11  Score=118.47  Aligned_cols=203  Identities=11%  Similarity=0.008  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                      ...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4567777778888888888888888877653 4456677777778888888888888888887765 4467788888999


Q ss_pred             HHHcCCHHHHHHHHhhcCC--CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 037256          357 YAKCGDLDTAENMFNDIHP--SER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDE  433 (680)
Q Consensus       357 y~k~g~~~~A~~~f~~~~~--~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  433 (680)
                      |.+.|++++|.+.|+++..  ..| +...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999866  444 46678888899999999999999999998853 2245678888889999999999


Q ss_pred             HHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 037256          434 GRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS  483 (680)
Q Consensus       434 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  483 (680)
                      |...++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...|+..
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            999999988753 456777888889999999999999988876 3344433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.44  E-value=4.8e-12  Score=124.57  Aligned_cols=241  Identities=11%  Similarity=0.005  Sum_probs=140.3

Q ss_pred             CCCccHHHHHHHHHHHcCCC---CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHH
Q 037256          189 AEKPEEALILFQKTQQEGLL---SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKA  265 (680)
Q Consensus       189 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A  265 (680)
                      .|++++|++.|+++.+....   .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            45666677777666654211   123445556666666666666666666666653 33566667777777777777777


Q ss_pred             HHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256          266 RLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN  342 (680)
Q Consensus       266 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~  342 (680)
                      .+.|++..+   .+...|..+...|.+.|++++|...|+++.+.  .|+.......+..+...|+++.|...+.......
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            777776653   35667777777888888888888888877764  3443333344444455667777777776665543


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256          343 MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT  417 (680)
Q Consensus       343 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  417 (680)
                       +++...+. ++..+...++.++|.+.++......|+     ...|..+...|...|++++|...|++..+  ..|+.. 
T Consensus       175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~-  249 (275)
T 1xnf_A          175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF-  249 (275)
T ss_dssp             -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC-
T ss_pred             -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH-
Confidence             22333332 555566666666677766666433221     34556666666666666666666666665  334321 


Q ss_pred             HHHHHHHHHccCCHHHHHHHH
Q 037256          418 FTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       418 ~~~ll~a~~~~g~~~~a~~~~  438 (680)
                       .....++...|++++|.+.+
T Consensus       250 -~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 -VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHHC----
T ss_pred             -HHHHHHHHHHHHHHhhHHHH
Confidence             11123444555555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.41  E-value=4e-11  Score=113.85  Aligned_cols=204  Identities=11%  Similarity=0.057  Sum_probs=126.3

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                      +..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            3444555555555555555555555555432 2234455555555555555555555555555443 3345566667777


Q ss_pred             HHHc-CCHHHHHHHHhhcCC--CCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCH
Q 037256          357 YAKC-GDLDTAENMFNDIHP--SERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLI  431 (680)
Q Consensus       357 y~k~-g~~~~A~~~f~~~~~--~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~  431 (680)
                      |... |++++|...|+++..  ..|+ ...|..+...|...|++++|+..|+++.+.  .|+ ...+..+...+...|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence            7777 777777777777644  2222 456777777777778888888877777764  343 45667777777777888


Q ss_pred             HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhH
Q 037256          432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSV  484 (680)
Q Consensus       432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~  484 (680)
                      ++|...++.+.+.....+...+..+...+...|+.++|..+++.+ ...|+...
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            888888777776531145566666777777777777777777665 23444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=7.1e-12  Score=120.81  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256          278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY  357 (680)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y  357 (680)
                      ..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            334444455555555555555555555432 2234444455555555555555555555555443 33455666666666


Q ss_pred             HHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037256          358 AKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRK  436 (680)
Q Consensus       358 ~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  436 (680)
                      .+.|++++|.+.|+++.... .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|..
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            67777777777776653332 345566667777777777777777777776632 2234566666667777777777777


Q ss_pred             HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .++++.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus       181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777766653 334566677777777777777777766654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.39  E-value=1.4e-10  Score=114.07  Aligned_cols=223  Identities=13%  Similarity=0.005  Sum_probs=115.0

Q ss_pred             ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHHHHHccCCCChhHHH
Q 037256          175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCIQN  250 (680)
Q Consensus       175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~  250 (680)
                      +..++..+...|.+.|++++|++.|++..+.   .+...+..+...+..    .+++++|...+....+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4445556666666666666666666666552   233444444444544    555555555555555443   344444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256          251 SIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGYIQ----NGQASEALLLFDEMQNSDCKPNPVTALILVSA  321 (680)
Q Consensus       251 ~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (680)
                      .|..+|..    .+++++|.+.|++..+ .+..++..+...|..    .+++++|+..|++..+.+              
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------  144 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------------  144 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence            45555555    5555555555554432 234445555555555    555555555555554433              


Q ss_pred             HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----c
Q 037256          322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM----H  393 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~  393 (680)
                                              +...+..+...|.+    .+++++|...|++.... .+..++..+...|..    .
T Consensus       145 ------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          145 ------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSC
T ss_pred             ------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCC
Confidence                                    22333344444444    45555555555544211 234455555555555    5


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcC
Q 037256          394 GHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       394 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~  445 (680)
                      +++++|++.|++..+.+  | ...+..+...+..    .+++++|.+.|++..+.|
T Consensus       200 ~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          200 KNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            56666666666555532  2 3344445555555    566666666666655543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=5.2e-11  Score=117.00  Aligned_cols=181  Identities=11%  Similarity=-0.027  Sum_probs=139.7

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc----HHHHHHHHhccCChHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT----FPFVLKACASNSLILEGK  130 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~  130 (680)
                      |++++|+..|+...+..| +...|..+...+.+.|++++|+..|++..+.+  ++...    |..+...+...|++++|.
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            999999999999988877 55689999999999999999999999998843  33333    778888899999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC
Q 037256          131 VVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL  207 (680)
Q Consensus       131 ~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  207 (680)
                      ..++..++.. +.+..++..+...|...|++++|.+.|++...   .+...|..+...+...+++++|++.|++..+.. 
T Consensus        95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  172 (272)
T 3u4t_A           95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-  172 (272)
T ss_dssp             HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            9999999875 45677888999999999999999999988764   355677777733444558999999999888753 


Q ss_pred             CCCHhHHHHHHHHHhccCC---hHHHHHHHHHHHHc
Q 037256          208 LSDSVTIVSVASAVGQLGD---VLKAQAVHGYAICN  240 (680)
Q Consensus       208 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~  240 (680)
                      +.+...+..+...+...++   .++|...+..+++.
T Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence            2234555555555655555   55566666655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=7.1e-11  Score=114.58  Aligned_cols=205  Identities=12%  Similarity=0.061  Sum_probs=127.2

Q ss_pred             hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 037256          176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAM  255 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~  255 (680)
                      ...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4567777788888888888888888877653 2344555555556666666666666666555543 2234444555555


Q ss_pred             HHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256          256 YARCGNVEKARLVFDMMEK--R---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (680)
                      |.+.|++++|.+.|+++.+  .   +...|..+...+.+.|++++|.+.|++                            
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------------------  166 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK----------------------------  166 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------
Confidence            5555555555555555433  1   223344444444455555555554444                            


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                             +.+.. +.+...+..+...|.+.|++++|...|+++.... .+...|..+...+...|+.++|.+.++++.+ 
T Consensus       167 -------~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-  237 (252)
T 2ho1_A          167 -------SLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR-  237 (252)
T ss_dssp             -------HHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             -------HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence                   44433 2345666777778888888888888888775443 3566777788888888888888888888887 


Q ss_pred             CCCCCHHHHHH
Q 037256          410 GVKPDHITFTS  420 (680)
Q Consensus       410 g~~p~~~t~~~  420 (680)
                       ..|+...+..
T Consensus       238 -~~p~~~~~~~  247 (252)
T 2ho1_A          238 -LYPGSLEYQE  247 (252)
T ss_dssp             -HCTTSHHHHH
T ss_pred             -HCCCCHHHHH
Confidence             4565554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.38  E-value=1.7e-10  Score=113.53  Aligned_cols=219  Identities=11%  Similarity=0.025  Sum_probs=173.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEKR-DLISWNSMLTGYIQ----NGQASEALLLFDEMQNSDCKPNPVTALILV  319 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (680)
                      +...+..+...|...|++++|...|++..++ +..++..+...|..    .+++++|+..|++..+.+   +...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            4455566777777778888888877776543 55677777778888    888888888888887765   566777777


Q ss_pred             HHHhh----hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256          320 SACTY----LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGYG  391 (680)
Q Consensus       320 ~a~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~  391 (680)
                      ..+..    .+++++|...++...+.+   +...+..+..+|.+    .+++++|.+.|++..... +..++..+...|.
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~  157 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Confidence            77777    888888888888888765   67788888888998    999999999999874333 6777888888888


Q ss_pred             h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh-
Q 037256          392 M----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR-  462 (680)
Q Consensus       392 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-  462 (680)
                      .    .+++++|+..|++..+.+   +...+..+...+..    .+++++|.+.|++..+.+   +...+..+..+|.+ 
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG  231 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence            7    899999999999998864   45677778888888    899999999999988864   25667778888888 


Q ss_pred             ---cCCHHHHHHHHHhC
Q 037256          463 ---AGCLYEAFDMIKQM  476 (680)
Q Consensus       463 ---~g~~~~A~~~~~~m  476 (680)
                         .|++++|.+.+++.
T Consensus       232 ~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             SSSSCCSTTHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHH
Confidence               89999999888875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=8.9e-11  Score=111.39  Aligned_cols=210  Identities=12%  Similarity=0.039  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 037256          176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAM  255 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~  255 (680)
                      ...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.           
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~-----------   74 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD-----------   74 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence            3445555556666666666666666555432 1223334444444444444444444444443332 11           


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhhcchHHHHH
Q 037256          256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQN-GQASEALLLFDEMQNSDCKPN-PVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                                          +..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..
T Consensus        75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence                                233344444444444 444444444444444211222 2334444444455555555555


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE--RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV  411 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  411 (680)
                      .+..+.+.. +.+...+..+...|.+.|++++|.+.|+++....  .+...|..+...+...|+.++|..+++.+.+  .
T Consensus       135 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~  211 (225)
T 2vq2_A          135 YLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--N  211 (225)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--h
Confidence            555544433 2345566667777777777777777777663332  3566677777777778888888888877776  3


Q ss_pred             CCCHHHHHHH
Q 037256          412 KPDHITFTSI  421 (680)
Q Consensus       412 ~p~~~t~~~l  421 (680)
                      .|+...+..+
T Consensus       212 ~p~~~~~~~~  221 (225)
T 2vq2_A          212 FPYSEELQTV  221 (225)
T ss_dssp             CTTCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            5655544433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.35  E-value=8.2e-11  Score=121.16  Aligned_cols=225  Identities=9%  Similarity=0.040  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC-hHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256          176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGD-VLKAQAVHGYAICNAFLEDLCIQNSIVA  254 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~  254 (680)
                      ...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            4467777777888888888888888877653 2234445555555555554 555555555555543 223444555555


Q ss_pred             HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256          255 MYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG  331 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (680)
                      +|.+.|++++|...|+++.+   .+...|..+..++.+.|++++|+..|+++.+                          
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--------------------------  228 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--------------------------  228 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------------------
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------
Confidence            55555555555555554432   2444555555555555555555555555554                          


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHH-cCCHHHH-----HHHHhhcCCCCC-CHhHHHHHHHHHHhcC--ChHHHHHH
Q 037256          332 RKFHGYIINSNMKIDATLRNAVMDMYAK-CGDLDTA-----ENMFNDIHPSER-NVSSWNVLIAGYGMHG--HGRKALEF  402 (680)
Q Consensus       332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k-~g~~~~A-----~~~f~~~~~~~~-~~~~~~~li~~~~~~g--~~~~A~~l  402 (680)
                               .. +.+...|+.+..+|.+ .|..++|     .+.|++.....| +...|+.+...+...|  ++++|++.
T Consensus       229 ---------l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~  298 (382)
T 2h6f_A          229 ---------ED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ  298 (382)
T ss_dssp             ---------HC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred             ---------hC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence                     33 2234444444444544 3333444     244444422233 3445555555555555  35556555


Q ss_pred             HHHHHHcCCCCCH-HHHHHHHHHHHccC---------CHHHHHHHHHHh
Q 037256          403 FSQMLEEGVKPDH-ITFTSILSACSHAG---------LIDEGRKCFADM  441 (680)
Q Consensus       403 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g---------~~~~a~~~~~~m  441 (680)
                      +.++ +  ..|+. ..+..+...+...|         .+++|.++++++
T Consensus       299 ~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          299 LLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            5555 2  33332 34455555555442         235566666665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.35  E-value=1.9e-11  Score=128.30  Aligned_cols=266  Identities=14%  Similarity=0.038  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-H----hHHHHHHHHHhccCChHHHHHHHHHHHHcc-----CCCChh
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-S----VTIVSVASAVGQLGDVLKAQAVHGYAICNA-----FLEDLC  247 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~  247 (680)
                      .+..+...+...|++++|+..|++..+.+  |+ .    ..+..+...+...|++++|...+..+++..     .+... 
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  126 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA-  126 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH-
Confidence            45556677778888888888888877653  22 2    245555555666666666666665554321     01112 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHH
Q 037256          248 IQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS----DCKP-NPVTALILVSAC  322 (680)
Q Consensus       248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~  322 (680)
                                                    .+|..+...|...|++++|+..|++..+.    +-.| ...++..+...+
T Consensus       127 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          127 ------------------------------KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY  176 (411)
T ss_dssp             ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence                                          33444444555555555555555444321    1011 123444555555


Q ss_pred             hhhcc-----------------hHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---
Q 037256          323 TYLGS-----------------RQLGRKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE---  377 (680)
Q Consensus       323 ~~~g~-----------------~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---  377 (680)
                      ...|+                 ++.|...+....+.    +. .....++..+...|...|++++|.+.|++.....   
T Consensus       177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            55666                 56666555554331    11 1223467778888888899999888888763321   


Q ss_pred             CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----
Q 037256          378 RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PD----HITFTSILSACSHAGLIDEGRKCFADMTKL----  444 (680)
Q Consensus       378 ~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----  444 (680)
                      .+    ..+|..+...|...|++++|.+.+++..+.... .+    ..++..+...+...|++++|.+++++..+.    
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            12    237788888999999999999999888763110 11    346777888899999999999999988764    


Q ss_pred             CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 SV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 ~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +. ......+..+...|.+.|++++|.+.+++.
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            11 112456778889999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.34  E-value=1.9e-11  Score=127.73  Aligned_cols=264  Identities=14%  Similarity=0.071  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHcc----CC-CChhH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNA----FL-EDLCI  248 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~  248 (680)
                      .+......+...|++++|+..|++..+.+. .+    ...+..+...+...|++++|...+..+++..    .. ....+
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            344445555555555566655555554421 11    1234444444555555555555554443321    01 11334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHHHHH
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQ--------------------ASEALLL  299 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~  299 (680)
                      +..+...|...|++++|...|++..+     .+    ..++..+...|...|+                    +++|+..
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            45555556666666666655554432     11    2345555555666666                    5555555


Q ss_pred             HHHHHhC----CCCCC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC--C---CchHHHHHHHHHHHHcCCHHHHHHH
Q 037256          300 FDEMQNS----DCKPN-PVTALILVSACTYLGSRQLGRKFHGYIINSNM--K---IDATLRNAVMDMYAKCGDLDTAENM  369 (680)
Q Consensus       300 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~--~---~~~~~~~~li~~y~k~g~~~~A~~~  369 (680)
                      +++..+.    +..|. ..++..+...+...|+++.|...+....+...  .   ....++..+...|...|++++|...
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            5544321    10111 12333444444444455554444444432100  0   0112344444445555555555554


Q ss_pred             HhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 037256          370 FNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPD-HITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       370 f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      |++....   .++    ..++..+...|...|++++|...+++..+.    +-.+. ..++..+...+...|++++|.+.
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4443111   011    233444444445555555555554444331    00011 12334444444444555555544


Q ss_pred             HHHhh
Q 037256          438 FADMT  442 (680)
Q Consensus       438 ~~~m~  442 (680)
                      +++..
T Consensus       330 ~~~al  334 (406)
T 3sf4_A          330 AEKHL  334 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.34  E-value=1.3e-10  Score=119.65  Aligned_cols=239  Identities=12%  Similarity=0.086  Sum_probs=170.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQ-ASEALLLFDEMQNSDCKPNPVTALILVSACTY  324 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (680)
                      ++.+...+.+.|++++|.+.|+++.+   .+...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..++..
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence            34444455555555555555555442   245556666666666664 666666666666543 2345556666666666


Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHh-cCChHHH---
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGM-HGHGRKA---  399 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~-~g~~~~A---  399 (680)
                      .|++++|...++.+++.. +.+...|..+..++.+.|++++|...|+++....| +...|+.+...|.. .|..++|   
T Consensus       179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~  257 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE  257 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence            666666666666666655 55778888899999999999999999999865555 58899999999998 6665777   


Q ss_pred             --HHHHHHHHHcCCCCCH-HHHHHHHHHHHccC--CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC---------C
Q 037256          400 --LEFFSQMLEEGVKPDH-ITFTSILSACSHAG--LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG---------C  465 (680)
Q Consensus       400 --~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~  465 (680)
                        ++.|++.++  +.|+. ..|..+...+...|  ++++|.+.+.++ + ..+.+...+..+.+.|.+.|         .
T Consensus       258 ~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~  333 (382)
T 2h6f_A          258 REVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDI  333 (382)
T ss_dssp             HHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence              588999988  56765 47888888888888  689999999888 3 23556778889999998874         3


Q ss_pred             HHHHHHHHHhC--CCCCCH-hHHHHHHHHHH
Q 037256          466 LYEAFDMIKQM--PLPPND-SVWGALLLACR  493 (680)
Q Consensus       466 ~~~A~~~~~~m--~~~p~~-~~~~~ll~a~~  493 (680)
                      +++|+++++++  .+.|+. ..|..+...+.
T Consensus       334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            58999999998  567754 45666655544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.33  E-value=4e-11  Score=121.36  Aligned_cols=270  Identities=11%  Similarity=0.001  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCC-CChhHHHH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL-EDLCIQNS  251 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~  251 (680)
                      .+......+...|++++|+..|++..+..  |+     ...+..+...+...|++++|...+..+++.... ++.     
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----   79 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ-----   79 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc-----
Confidence            34455666777777777777777776653  22     234445555555566666666655554432100 000     


Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhhhc
Q 037256          252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN----PVTALILVSACTYLG  326 (680)
Q Consensus       252 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g  326 (680)
                                            .....++..+...|...|++++|...+++..+... .++    ..++..+...+...|
T Consensus        80 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~  137 (338)
T 3ro2_A           80 ----------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  137 (338)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence                                  00123344445555555555555555554432100 011    224444455555555


Q ss_pred             c--------------------hHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CC
Q 037256          327 S--------------------RQLGRKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ER  378 (680)
Q Consensus       327 ~--------------------~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~  378 (680)
                      +                    ++.|...+....+.    +. +....++..+...|...|++++|.+.|++....   .+
T Consensus       138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  217 (338)
T 3ro2_A          138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  217 (338)
T ss_dssp             HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence            5                    55555555544321    11 112346677778888888888888888876322   11


Q ss_pred             C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----C
Q 037256          379 N----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG----VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----S  445 (680)
Q Consensus       379 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~  445 (680)
                      +    ..+|..+...|...|++++|.+.+++..+..    ..+. ..++..+...+...|++++|...+++..+.    +
T Consensus       218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence            2    3367888888899999999999998877531    1111 346777788889999999999999887664    1


Q ss_pred             C-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          446 V-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       446 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      . ......+..+...|.+.|++++|.+.+++.
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1 112446778889999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=2.3e-11  Score=130.07  Aligned_cols=213  Identities=11%  Similarity=0.042  Sum_probs=171.3

Q ss_pred             hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          293 ASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR-QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       293 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      +++++..+++..... +.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456666666555432 34566677777777777888 88888887777765 4467788889999999999999999999


Q ss_pred             hcCCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc--------CCHHH
Q 037256          372 DIHPSERNVSSWNVLIAGYGMH---------GHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHA--------GLIDE  433 (680)
Q Consensus       372 ~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~  433 (680)
                      +.....|+...|..+...|...         |++++|++.|++..+  +.|+ ...+..+..++...        |++++
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            9877788888888999999998         999999999999998  4555 55788888888888        99999


Q ss_pred             HHHHHHHhhhcCCC---cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256          434 GRKCFADMTKLSVK---PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH  510 (680)
Q Consensus       434 a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~  510 (680)
                      |.+.|++..+.. +   .+...|..+..+|.+.|++++|++.+++.                           ++++|++
T Consensus       240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------------l~l~p~~  291 (474)
T 4abn_A          240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQA---------------------------AALDPAW  291 (474)
T ss_dssp             HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HHHCTTC
T ss_pred             HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------------HHhCCCC
Confidence            999999998863 2   47888999999999999999998888653                           5678888


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256          511 TGYFVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      +..+..++.++...|++++|.+.+.++
T Consensus       292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          292 PEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888899999999999999998755443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=3.6e-11  Score=115.84  Aligned_cols=196  Identities=10%  Similarity=0.030  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037256          246 LCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC  322 (680)
Q Consensus       246 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  322 (680)
                      ...+..+...+...|++++|...|+++.+   .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            34455555666666666666666666543   245666666677777777777777777766543 33555666666677


Q ss_pred             hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHH
Q 037256          323 TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       323 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      ...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.... .+...|..+...|...|++++|++
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777776654 3456677777778888888888888887764333 356677778888888888888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          402 FFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       402 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus       181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            888887742 233557777777888888888888888887765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.32  E-value=7e-11  Score=123.38  Aligned_cols=268  Identities=10%  Similarity=-0.014  Sum_probs=203.9

Q ss_pred             CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----C
Q 037256          209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED---LCIQNSIVAMYARCGNVEKARLVFDMMEK-----R----D  276 (680)
Q Consensus       209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~----~  276 (680)
                      +....+......+...|++++|...+..+++......   ..++..+...|...|++++|...|++...     .    .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3445566677788899999999999999998753221   35788899999999999999999887642     1    2


Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhhhcc--------------------hHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN----PVTALILVSACTYLGS--------------------RQLG  331 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~~a  331 (680)
                      ..+|..+...|...|++++|+..+++..+... .++    ..++..+...+...|+                    ++.|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            45788888999999999999999998765310 012    3467778888899999                    9999


Q ss_pred             HHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHH
Q 037256          332 RKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKA  399 (680)
Q Consensus       332 ~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A  399 (680)
                      ...+....+.    +. +....++..+...|...|++++|.+.|++....   .++    ..+|..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9888877542    11 122457788889999999999999999887322   222    33788889999999999999


Q ss_pred             HHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc-ChHHHHHHHHHHHhcCCHHHH
Q 037256          400 LEFFSQMLEE----GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----SVKP-EVKHYACMVDMLGRAGCLYEA  469 (680)
Q Consensus       400 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A  469 (680)
                      ...+++..+.    +..+. ..++..+...+...|++++|...+++..+.    +..+ ....+..+...|.+.|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999988753    11111 347778888899999999999999988764    1111 155778888999999999999


Q ss_pred             HHHHHhC
Q 037256          470 FDMIKQM  476 (680)
Q Consensus       470 ~~~~~~m  476 (680)
                      .+.+++.
T Consensus       327 ~~~~~~a  333 (406)
T 3sf4_A          327 MHFAEKH  333 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=1.2e-10  Score=107.13  Aligned_cols=165  Identities=15%  Similarity=0.105  Sum_probs=137.9

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS  423 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~  423 (680)
                      +..+|..+...|.+.|++++|.+.|++.....| +..+|..+...|.+.|++++|+..+.+....  .|+ ...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            567888899999999999999999998755454 5778888999999999999999999998884  444 446666777


Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYL  503 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~  503 (680)
                      .+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|++.+++                           +
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------------~  133 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEK---------------------------T  133 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------H
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHH---------------------------H
Confidence            8888999999999999888763 45577788888999999999999888765                           3


Q ss_pred             HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      ++++|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus       134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            5678999999999999999999999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.30  E-value=2.7e-11  Score=127.02  Aligned_cols=268  Identities=14%  Similarity=0.083  Sum_probs=180.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch----hHHHHHHHHHHhCCCccHHHHHHHHHHHc----CC-CCCHhH
Q 037256          146 YVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DL----VSWTVMITAYEQAEKPEEALILFQKTQQE----GL-LSDSVT  213 (680)
Q Consensus       146 ~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t  213 (680)
                      ..+..+...+...|++++|...|++..+  + +.    ..|..+...|...|++++|++.|++..+.    +- +.....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            4455667788999999999999988752  2 33    47889999999999999999999988653    11 123345


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHcc-----CCCChhHHHHHHHHHHhcCC-----------------HHHHHHHHHh
Q 037256          214 IVSVASAVGQLGDVLKAQAVHGYAICNA-----FLEDLCIQNSIVAMYARCGN-----------------VEKARLVFDM  271 (680)
Q Consensus       214 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~-----------------~~~A~~~f~~  271 (680)
                      +..+...+...|++++|...+..+++..     .+....++..+...|...|+                 +++|.+.|++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            6777778888899999988888776542     11223456666667777777                 6666666554


Q ss_pred             cCC-----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256          272 MEK-----R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN  342 (680)
Q Consensus       272 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~  342 (680)
                      ..+     .    ...+|..+...|...|++++|+..|++..+..  +                             +.+
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~  257 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--R-----------------------------EFG  257 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--H-----------------------------hcC
Confidence            321     0    12344555555555666666655555544310  0                             000


Q ss_pred             C-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 037256          343 M-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE---R----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE----G  410 (680)
Q Consensus       343 ~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g  410 (680)
                      . .....++..+...|...|++++|.+.|++.....   .    ...++..+...|...|++++|...+++..+.    +
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            0 0012356667777888888888888887663221   1    1457788888899999999999999888763    1


Q ss_pred             CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          411 VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       411 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..+. ..++..+...+...|++++|.+.+++..+.
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1111 236777888899999999999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=4.7e-10  Score=112.63  Aligned_cols=246  Identities=11%  Similarity=0.076  Sum_probs=157.8

Q ss_pred             HHHHHHHHhcCC---CChhHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhh
Q 037256          263 EKARLVFDMMEK---RDLISWNSMLTGYI-------QNGQA-------SEALLLFDEMQNSDCKP-NPVTALILVSACTY  324 (680)
Q Consensus       263 ~~A~~~f~~m~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~  324 (680)
                      +.|..+|++...   .++..|..++..+.       +.|++       ++|..+|++..+. +.| +...+..+...+..
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence            445555555543   34556666555554       34664       7777777777753 133 34466666777777


Q ss_pred             hcchHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHH-HhcCChHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDAT-LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGY-GMHGHGRKALE  401 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~-~~~g~~~~A~~  401 (680)
                      .|+++.|..+++.+++.. +.+.. +|..++..+.+.|++++|.++|++.....| +...|....... ...|+.++|.+
T Consensus       112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            777777777777777643 12233 788888888888888888888888755433 334444333322 23688999999


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256          402 FFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL-SVKP--EVKHYACMVDMLGRAGCLYEAFDMIKQM-  476 (680)
Q Consensus       402 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-  476 (680)
                      +|++..+.  .|+ ...|..++..+.+.|++++|..+|++..+. .++|  ....|..++..+.+.|+.++|..+++++ 
T Consensus       191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99888874  454 457777888888889999999999988886 3455  3667888888888889999998888876 


Q ss_pred             CCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHH
Q 037256          477 PLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMS  518 (680)
Q Consensus       477 ~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~  518 (680)
                      ...|+...-..+ ..+     ....+++.++|+++..+..|+
T Consensus       269 ~~~p~~~~~~~~-~~~-----~~r~~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          269 TAFREEYEGKET-ALL-----VDRYKFMDLYPCSASELKALG  304 (308)
T ss_dssp             HHTTTTTSSCHH-HHH-----HTTTCBTTBCSSCHHHHHTTT
T ss_pred             HHcccccccchH-HHH-----HHHHHhcccCCCCHHHHHhcC
Confidence            223331110000 010     111245668888876665543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.28  E-value=7.6e-11  Score=122.47  Aligned_cols=229  Identities=7%  Similarity=0.075  Sum_probs=162.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC--C----CCchHHHH
Q 037256          283 MLTGYIQNGQASEALLLFDEMQNS----DCKP-NPVTALILVSACTYLGSRQLGRKFHGYIINSN--M----KIDATLRN  351 (680)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~--~----~~~~~~~~  351 (680)
                      ....+...|++++|+..|++..+.    +-.+ ...++..+...+...|+++.|...+....+..  .    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444566677777777777776543    1111 22455666666777777777777776665421  1    11245677


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHH
Q 037256          352 AVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDH-ITFT  419 (680)
Q Consensus       352 ~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~  419 (680)
                      .+...|...|++++|.+.|++....   .++    ..+++.+...|...|++++|++.|++..+.    +..|+. .++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7888889999999999888876322   122    247888899999999999999999988762    332444 4788


Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhc----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKL----SVKPEVKHYACMVDMLGRAGC---LYEAFDMIKQMPLPPNDSVWGALLLAC  492 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~~~~~ll~a~  492 (680)
                      .+...+...|++++|...+++..+.    +-+.....+..+...|...|+   +++|+.++++.+..|            
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~------------  336 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA------------  336 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH------------
Confidence            8888999999999999999987764    222233445678888888888   888888888874321            


Q ss_pred             HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          493 RIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       493 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                                      .....+..++.+|...|++++|.+.+++..+
T Consensus       337 ----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 ----------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                            1234677899999999999999999999865

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.28  E-value=4.8e-11  Score=120.75  Aligned_cols=271  Identities=14%  Similarity=0.070  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCC--C-C----hhHHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCC-CHhHH
Q 037256          147 VQAALVDMYAKCGQTDDGCKVFDEMSV--R-D----LVSWTVMITAYEQAEKPEEALILFQKTQQE----GLLS-DSVTI  214 (680)
Q Consensus       147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~  214 (680)
                      .+......+...|++++|...|++..+  | +    ...|..+...+...|++++|++.+++..+.    +..| ....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            444556778899999999999988642  2 3    357889999999999999999999987643    1111 13345


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHccCC-CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 037256          215 VSVASAVGQLGDVLKAQAVHGYAICNAFL-ED----LCIQNSIVAMYARCGN--------------------VEKARLVF  269 (680)
Q Consensus       215 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~~y~~~g~--------------------~~~A~~~f  269 (680)
                      ..+...+...|++++|...+...++.... ++    ..++..+...|...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            55556666666777766666665543211 11    2244445555555555                    44444444


Q ss_pred             HhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CC-
Q 037256          270 DMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP-NPVTALILVSACTYLGSRQLGRKFHGYIINS----NM-  343 (680)
Q Consensus       270 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~-  343 (680)
                      ++...                        ++   ...+..+ ....+..+...+...|+++.|...+....+.    +. 
T Consensus       167 ~~a~~------------------------~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  219 (338)
T 3ro2_A          167 EENLS------------------------LV---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK  219 (338)
T ss_dssp             HHHHH------------------------HH---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHH------------------------HH---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence            43221                        00   0001011 1123344444445555555555555444321    10 


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVK  412 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~  412 (680)
                      .....++..+...|.+.|++++|.+.|++....   ..+    ..++..+...|...|++++|...+++..+.    +-.
T Consensus       220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  299 (338)
T 3ro2_A          220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  299 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence            111336667778888888888888888776322   112    456778888899999999999999888753    111


Q ss_pred             CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          413 PD-HITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       413 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      +. ..++..+...+...|++++|...+++..+.
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            11 236777888899999999999999988764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=1e-08  Score=112.79  Aligned_cols=419  Identities=9%  Similarity=0.002  Sum_probs=286.7

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCC---chHHHHHHHHHHhCC-CCC
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGH---CVETLELYSTMRRSG-ISS  108 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p  108 (680)
                      |...|..++....+ .      +.++.|+.+|+.+...-| ....|..-+..-.+.|+   ++.+..+|++..... ..|
T Consensus        65 d~~~W~~yi~~~~~-~------~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~  137 (679)
T 4e6h_A           65 DIFLYVKLLKHHVS-L------KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN  137 (679)
T ss_dssp             CHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred             CHHHHHHHHHHHHh-c------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence            88889999998888 7      899999999999988888 56689999999999998   999999999998764 137


Q ss_pred             CcccHHHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHH---------hcCChHHHHHHH
Q 037256          109 NSYTFPFVLKACASNSLI--------LEGKVVHGDIIRT-GF-LSD-SYVQAALVDMYA---------KCGQTDDGCKVF  168 (680)
Q Consensus       109 ~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~~~---------~~g~~~~A~~~f  168 (680)
                      +...|..-+.-..+.++.        +...++|+..+.. |. .++ ...|...+....         ..++++.++++|
T Consensus       138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy  217 (679)
T 4e6h_A          138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY  217 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence            777787777665554443        3455788877653 65 554 468888776644         234678999999


Q ss_pred             hcCCC-C--Ch-hHH---HHHHHHHH----------hCCCccHHHHHHHHHHH--cCCC---------------C-----
Q 037256          169 DEMSV-R--DL-VSW---TVMITAYE----------QAEKPEEALILFQKTQQ--EGLL---------------S-----  209 (680)
Q Consensus       169 ~~~~~-~--~~-~~~---~~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~---------------p-----  209 (680)
                      ++... |  +. ..|   ..+...+.          ...+++.|...+.++..  .++.               |     
T Consensus       218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~  297 (679)
T 4e6h_A          218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY  297 (679)
T ss_dssp             HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence            88764 2  11 223   22222210          01123344555554322  1111               1     


Q ss_pred             C---HhHHHHHHHHHhccC-------ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---C
Q 037256          210 D---SVTIVSVASAVGQLG-------DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKAR-LVFDMMEK---R  275 (680)
Q Consensus       210 ~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~m~~---~  275 (680)
                      +   ...|...+.---..+       ..+....+|++++.. ++.+..+|-..+..+...|+.++|. ++|++...   .
T Consensus       298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~  376 (679)
T 4e6h_A          298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN  376 (679)
T ss_dssp             CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence            1   123444443332222       123456778888876 3557888888888888999998996 99988754   3


Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---------CCC------------HhhHHHHHHHHhhhcchHHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDC---------KPN------------PVTALILVSACTYLGSRQLGRKF  334 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~i  334 (680)
                      +...|-..+...-+.|++++|.++|+++.....         .|+            ...|...+....+.|..+.|+.+
T Consensus       377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v  456 (679)
T 4e6h_A          377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI  456 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            556688888888999999999999999876310         132            23577777777888999999999


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037256          335 HGYIINSNMKIDATLRNAVMDMYAKCG-DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK  412 (680)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  412 (680)
                      +..+.+.-......+|.....+-.+++ +.+.|.++|+...+. ..+...|...+......|+.+.|..+|++.......
T Consensus       457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            999987611222334444444444554 599999999988544 345677888888888899999999999999885322


Q ss_pred             CC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256          413 PD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR  462 (680)
Q Consensus       413 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  462 (680)
                      |.  ...|...+.--...|+.+.+..+.+++.+.  .|+......+++-|.-
T Consensus       537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~  586 (679)
T 4e6h_A          537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV  586 (679)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence            22  246777787778899999999999999986  3444455555666643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=1.1e-08  Score=112.45  Aligned_cols=426  Identities=9%  Similarity=0.032  Sum_probs=249.7

Q ss_pred             ChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC---hHHHHHH
Q 037256           57 EPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL---ILEGKVV  132 (680)
Q Consensus        57 ~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~  132 (680)
                      ...+.+..|+......| |..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++   ++.+.++
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l  125 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV  125 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            34555656666666667 8889999999999999999999999999886 34456677777777777888   9999999


Q ss_pred             HHHHHHhCC-CCchhHHHHHHHHHHhcCCh--------HHHHHHHhcCC------CC-ChhHHHHHHHHHHh--------
Q 037256          133 HGDIIRTGF-LSDSYVQAALVDMYAKCGQT--------DDGCKVFDEMS------VR-DLVSWTVMITAYEQ--------  188 (680)
Q Consensus       133 ~~~~~~~g~-~~~~~~~~~Li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~--------  188 (680)
                      |+..+.... .|++..|...+....+.++.        +...++|+...      .+ +...|...+.....        
T Consensus       126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e  205 (679)
T 4e6h_A          126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE  205 (679)
T ss_dssp             HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence            999987641 37888888887766665554        33446776521      22 34578777765432        


Q ss_pred             -CCCccHHHHHHHHHHHcCCCCCHhHHH---HHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHH
Q 037256          189 -AEKPEEALILFQKTQQEGLLSDSVTIV---SVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK  264 (680)
Q Consensus       189 -~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~  264 (680)
                       +++.+.+..+|++.+......-..+|.   ......   +. ..+..++...                     ..+++.
T Consensus       206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~---~~-~~a~~~~~e~---------------------~~~y~~  260 (679)
T 4e6h_A          206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV---NQ-LTARRHIGEL---------------------SAQYMN  260 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH---CT-TTHHHHHHHH---------------------HHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc---Cc-chHHHHHHHh---------------------hHHHHH
Confidence             334667888888877421111112221   111111   00 0011111110                     011222


Q ss_pred             HHHHHHh-------cCC--------------C--------ChhHHHHHHHHHHHcC-------ChhHHHHHHHHHHhCCC
Q 037256          265 ARLVFDM-------MEK--------------R--------DLISWNSMLTGYIQNG-------QASEALLLFDEMQNSDC  308 (680)
Q Consensus       265 A~~~f~~-------m~~--------------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~  308 (680)
                      |...+.+       +..              |        ....|...+.---.++       ..+.+..+|++.... .
T Consensus       261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~  339 (679)
T 4e6h_A          261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V  339 (679)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence            2222221       000              0        0123444444322222       123345566666654 2


Q ss_pred             CCCHhhHHHHHHHHhhhcchHHHH-HHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------
Q 037256          309 KPNPVTALILVSACTYLGSRQLGR-KFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----------  376 (680)
Q Consensus       309 ~p~~~t~~~ll~a~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----------  376 (680)
                      +-+...|.....-+...|+.+.|. .+++..+.. ++.+...+-.++...-+.|+++.|.++|+++...           
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            335555666666666667777775 777777754 3456666777777777788888888887776321           


Q ss_pred             CCC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhhh
Q 037256          377 ERN------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA-GLIDEGRKCFADMTK  443 (680)
Q Consensus       377 ~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~  443 (680)
                      .|+            ...|...+....+.|..+.|..+|.+..+.-..+....|......-.+. ++++.|..+|+...+
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            121            2357777777777777888888888877641011122333222222233 447888888887777


Q ss_pred             cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCC
Q 037256          444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN----DSVWGALLLACRIH-----GEIAANYLFQLEPEHT  511 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~  511 (680)
                      . ++-+...+...++.....|+.+.|..+|++. ...|+    ...|...+.-=..+     .....+++.+..|+++
T Consensus       499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            6 3344556667777777788888888888775 22232    24565555544444     4556667777888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.24  E-value=5.5e-11  Score=119.13  Aligned_cols=231  Identities=14%  Similarity=0.109  Sum_probs=116.7

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc------C
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNS-------DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS------N  342 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~------~  342 (680)
                      +..+|..+...|...|++++|+.+|+++.+.       ..+.....+..+...+...|++++|...+..+.+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3467788888888999999999998888752       11222334555555556666666666666555432      1


Q ss_pred             C-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCH
Q 037256          343 M-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE------GVKPDH  415 (680)
Q Consensus       343 ~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~  415 (680)
                      - +....++..+...|...|++++|.+.|+                                 +..+.      +-.|+.
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------------------~a~~~~~~~~~~~~~~~  152 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK---------------------------------RALEIREKVLGKDHPDV  152 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------------------------------HHHHHHHHHHCTTCHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHH---------------------------------HHHHHHHHhcCCCChHH
Confidence            1 1223344444455555555555555544                                 44432      111211


Q ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHhhhc------CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----------
Q 037256          416 -ITFTSILSACSHAGLIDEGRKCFADMTKL------SVKP-EVKHYACMVDMLGRAGCLYEAFDMIKQMP----------  477 (680)
Q Consensus       416 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------  477 (680)
                       ..+..+...+...|++++|.++++++.+.      +..| ....+..+...|.+.|++++|.+.++++-          
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  232 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS  232 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence             23444444444455555555544444432      1011 12334444445555555555554444430          


Q ss_pred             CCCCHhHHHHHHHHHHHH------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          478 LPPNDSVWGALLLACRIH------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       478 ~~p~~~~~~~ll~a~~~~------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      ..|...........+...            +...++......|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            011111111111111111            12233344445677778899999999999999999999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.23  E-value=4.4e-10  Score=103.21  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA  321 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (680)
                      +..+|..|...|.+.|++++|.+.|++..+   .++.+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            344555566666666666666666665542   245556666666666666666666666655432 2233333344444


Q ss_pred             HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256          322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  400 (680)
                      +...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++.....| +..+|..+...|.+.|++++|+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            444455555555544444433 23344444445555555555555555554422222 3444455555555555555555


Q ss_pred             HHHHHHHH
Q 037256          401 EFFSQMLE  408 (680)
Q Consensus       401 ~l~~~m~~  408 (680)
                      +.|++..+
T Consensus       162 ~~~~~al~  169 (184)
T 3vtx_A          162 KYFKKALE  169 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.22  E-value=4e-10  Score=117.02  Aligned_cols=228  Identities=11%  Similarity=-0.001  Sum_probs=103.4

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC------ChhHHH
Q 037256          182 MITAYEQAEKPEEALILFQKTQQEGL-LSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE------DLCIQN  250 (680)
Q Consensus       182 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~  250 (680)
                      ....+...|++++|++.|++..+.-. .+|    ..++..+...+...|+++.|...+...++.-...      ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            33445556666666666666544200 111    2234444445555555555555554444321100      122344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256          251 SIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA  321 (680)
Q Consensus       251 ~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (680)
                      .+...|...|++++|.+.|++..+     ++    ..++..+...|...|++++|++.|++..+..              
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--------------  254 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF--------------  254 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence            455555555555555555544331     11    1244445555555555555555555544310              


Q ss_pred             HhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CCC-HhHHHHHHHHHHhcC
Q 037256          322 CTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ERN-VSSWNVLIAGYGMHG  394 (680)
Q Consensus       322 ~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~-~~~~~~li~~~~~~g  394 (680)
                                       .+.+. +....++..+...|.+.|++++|.+.|++....     .+. ...++.+...|...|
T Consensus       255 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~  317 (383)
T 3ulq_A          255 -----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP  317 (383)
T ss_dssp             -----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred             -----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence                             00011 222334444555555555555555555443211     111 112344455555555


Q ss_pred             C---hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          395 H---GRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       395 ~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      +   .++|+.++++.   +..|+.. .+..+...|...|++++|...+++..+
T Consensus       318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5   44555554443   2233322 444555566666666666666665544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.21  E-value=2.7e-09  Score=107.05  Aligned_cols=163  Identities=9%  Similarity=-0.020  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-h-hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-V-TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM  356 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~  356 (680)
                      .|..++..+.+.|++++|.++|++..+.  .|+. . .|..+...+.+.|+++.|..+++.+++.. +.+..+|......
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~  177 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4444444444444444444444444432  2221 1 34444444444445555555554444432 1223333333222


Q ss_pred             HH-HcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCCH
Q 037256          357 YA-KCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPD--HITFTSILSACSHAGLI  431 (680)
Q Consensus       357 y~-k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~  431 (680)
                      .. ..|++++|.++|++..... .+...|..++..+.+.|+.++|..+|++..... +.|+  ...|..++......|+.
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            22 2466666666666653332 245666666666667777777777777776642 3443  33566666666666777


Q ss_pred             HHHHHHHHHhhhc
Q 037256          432 DEGRKCFADMTKL  444 (680)
Q Consensus       432 ~~a~~~~~~m~~~  444 (680)
                      +.|..+++++.+.
T Consensus       258 ~~a~~~~~~a~~~  270 (308)
T 2ond_A          258 ASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.19  E-value=2.1e-10  Score=127.61  Aligned_cols=166  Identities=10%  Similarity=0.221  Sum_probs=139.7

Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSI  421 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l  421 (680)
                      +.+...++.|...|.+.|++++|.+.|++..+..| +..+|+.+...|.+.|++++|++.|++.++  +.|+. ..|..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            33567788888999999999999999998855555 477889999999999999999999999988  56764 588888


Q ss_pred             HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 037256          422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAAN  501 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~  501 (680)
                      ..++...|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|++.+++                          
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~--------------------------  136 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRT--------------------------  136 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Confidence            889999999999999999988764 34577888899999999999998877764                          


Q ss_pred             HHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          502 YLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       502 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                       +++++|+++..+..|+.+|...|+|++|.+.+++..+
T Consensus       137 -Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          137 -ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             -HHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             -HHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence             4678899999999999999999999999998888653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=4.1e-10  Score=120.28  Aligned_cols=201  Identities=12%  Similarity=0.042  Sum_probs=108.4

Q ss_pred             ChhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256          245 DLCIQNSIVAMYARCGNV-EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS  320 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (680)
                      +...+..+...|...|++ ++|.+.|++..+   .+...|..+...|.+.|++++|++.|++..+.  .|+...+..+..
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence            334444444444445555 555554444332   23445555666666666666666666665543  344444444444


Q ss_pred             HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc------
Q 037256          321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH------  393 (680)
Q Consensus       321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~------  393 (680)
                      ++...+.-                          ....+.|++++|.+.|++.....| +...|..+..+|...      
T Consensus       179 ~~~~~~~~--------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          179 VLRQLQTD--------------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHTTCCCS--------------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccC--------------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            44444000                          000000444444444444422222 344555555555555      


Q ss_pred             --CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256          394 --GHGRKALEFFSQMLEEGVKP----DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY  467 (680)
Q Consensus       394 --g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  467 (680)
                        |++++|++.|++..+  +.|    +...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|+++
T Consensus       233 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          233 NPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             CHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence              666777777777666  344    44566666667777777777777777766653 334455666677777777777


Q ss_pred             HHHHHHHhC
Q 037256          468 EAFDMIKQM  476 (680)
Q Consensus       468 ~A~~~~~~m  476 (680)
                      +|++.+.++
T Consensus       310 eAi~~~~~~  318 (474)
T 4abn_A          310 SLLESKGKT  318 (474)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHhccc
Confidence            777766665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=3.4e-10  Score=113.26  Aligned_cols=231  Identities=13%  Similarity=0.069  Sum_probs=163.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC------C
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--------R---DLISWNSMLTGYIQNGQASEALLLFDEMQNS------D  307 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g  307 (680)
                      +..++..+...|...|++++|...|+++.+        .   ...++..+...|...|++++|...|++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            466788899999999999999999998764        2   3456888999999999999999999998764      2


Q ss_pred             CCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---
Q 037256          308 CKP-NPVTALILVSACTYLGSRQLGRKFHGYIINS------NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---  376 (680)
Q Consensus       308 ~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---  376 (680)
                      -.| ...++..+...+...|++++|...+..+.+.      +. +....++..+...|.+.|++++|.+.|++....   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            223 3557788888999999999999999998764      22 234567888899999999999999999887332   


Q ss_pred             -----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHH-------HHHHHHHccCCHHHHHH
Q 037256          377 -----ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE-------GVKPDHITFT-------SILSACSHAGLIDEGRK  436 (680)
Q Consensus       377 -----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~-------~ll~a~~~~g~~~~a~~  436 (680)
                           .| ...+|..+...|...|++++|.+.++++.+.       ...|......       .+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence                 22 2457888899999999999999999998863       1222222221       22222333444445555


Q ss_pred             HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+....... +.....+..+...|.+.|++++|.+.+++.
T Consensus       266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555554432 445677888999999999999999998864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.16  E-value=3.4e-09  Score=96.77  Aligned_cols=165  Identities=13%  Similarity=0.064  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC  425 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  425 (680)
                      ...+..+...|...|++++|.+.|+++....| +...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34566778889999999999999999866544 67788999999999999999999999999852 33556788888899


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHc
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQ  505 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~  505 (680)
                      ...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++.                           ++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------------------~~  138 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------------------LG  138 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------------------Hh
Confidence            99999999999999998764 456778888999999999999999888764                           34


Q ss_pred             cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          506 LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       506 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      ..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            56778888999999999999999999999998764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=4.3e-08  Score=101.06  Aligned_cols=260  Identities=12%  Similarity=-0.009  Sum_probs=141.0

Q ss_pred             HHHHhCCCccHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCChHHHHHHHHHHHHccCC-CC----hhHHHHHHH
Q 037256          184 TAYEQAEKPEEALILFQKTQQEGLLSDSV----TIVSVASAVGQLGDVLKAQAVHGYAICNAFL-ED----LCIQNSIVA  254 (680)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~  254 (680)
                      ..+...|++++|...+++........+..    .+..+...+...|++++|...+....+.... .+    ..++..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34445556666666665554432111111    2333334444555666665555555442111 11    122345556


Q ss_pred             HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--C--CHhhHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEK-------R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK--P--NPVTALILV  319 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll  319 (680)
                      .|...|++++|...+++..+       +    ....+..+...+...|++++|...+++.......  +  ...++..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            66666777666666655432       1    1234455666677777777777777776543211  1  123455556


Q ss_pred             HHHhhhcchHHHHHHHHHHHHcCCCCc-hHHHH-----HHHHHHHHcCCHHHHHHHHhhcCCCCCC-----HhHHHHHHH
Q 037256          320 SACTYLGSRQLGRKFHGYIINSNMKID-ATLRN-----AVMDMYAKCGDLDTAENMFNDIHPSERN-----VSSWNVLIA  388 (680)
Q Consensus       320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~-----~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~  388 (680)
                      ..+...|++++|...++...+..-.++ ...+.     ..+..+...|++++|...+++.....+.     ...+..+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            666677777777777766654311111 11111     2334466788888888888877544322     224556667


Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          389 GYGMHGHGRKALEFFSQMLEE----GVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      .+...|++++|...+++....    |..++.. .+..+..++...|+.++|...+++...
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            777778888888877776542    2112222 444555566777777777777776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=8.8e-09  Score=106.60  Aligned_cols=160  Identities=10%  Similarity=0.008  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCC-CHhHH
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIINS----NMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHP-----SER-NVSSW  383 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~-~~~~~  383 (680)
                      +..+...+...|+++.|...+....+.    +.+ ....+++.+...|...|++++|.+.|++...     ..| ...++
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            334444444444444444444444321    111 1223455566666666776666666665533     222 24456


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCH-HHHHHHHHHHHccCC---HHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGV---KPDH-ITFTSILSACSHAGL---IDEGRKCFADMTKLSVKPEVKHYACM  456 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l  456 (680)
                      ..+...|.+.|++++|...+++..+...   .|.. ..+..+...+...++   +++|..+++...  ..+.....+..+
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~l  342 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHH
Confidence            6666777777777777777777665321   1222 234444445556666   666666665521  112223455567


Q ss_pred             HHHHHhcCCHHHHHHHHHhC
Q 037256          457 VDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       457 i~~~~~~g~~~~A~~~~~~m  476 (680)
                      ...|...|++++|.+.+++.
T Consensus       343 a~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            77777777777777777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.06  E-value=1.5e-08  Score=96.42  Aligned_cols=97  Identities=10%  Similarity=-0.013  Sum_probs=47.7

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD  355 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~  355 (680)
                      |+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|...+....+.. +.+..++..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            4455666666666666666666666666654322444444444444444444444444444444332 223334444444


Q ss_pred             HHHHcCCHHHHHHHHhhc
Q 037256          356 MYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~  373 (680)
                      .|.+.|++++|.+.|++.
T Consensus        85 ~~~~~~~~~~A~~~~~~a  102 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEG  102 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHH
Confidence            444444444444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.05  E-value=3.6e-08  Score=101.65  Aligned_cols=259  Identities=12%  Similarity=0.064  Sum_probs=182.5

Q ss_pred             HHHHhccCChHHHHHHHHHHHHccCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHH
Q 037256          218 ASAVGQLGDVLKAQAVHGYAICNAFLEDLC----IQNSIVAMYARCGNVEKARLVFDMMEK-----RDL----ISWNSML  284 (680)
Q Consensus       218 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li  284 (680)
                      ...+...|++++|...+...+......+..    +++.+...|...|++++|.+.+++...     .+.    .++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344557899999999999988765333322    566777888999999999999887653     222    3356677


Q ss_pred             HHHHHcCChhHHHHHHHHHHhC----CCC--CC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC----chHHHHHH
Q 037256          285 TGYIQNGQASEALLLFDEMQNS----DCK--PN-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKI----DATLRNAV  353 (680)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~----~~~~~~~l  353 (680)
                      ..+...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...+....+.....    ....+..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            8889999999999999887642    222  32 3455667778888999999999998887643221    23567778


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCC--CC-CHhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPS--ER-NVSSWN-----VLIAGYGMHGHGRKALEFFSQMLEEGVKPD---HITFTSIL  422 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll  422 (680)
                      ...+...|++++|...+++....  .+ +...|.     ..+..+...|++++|...+++.......++   ...+..+.
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            88899999999999998876321  11 112222     233447788999999999988765322111   22456677


Q ss_pred             HHHHccCCHHHHHHHHHHhhhc----CCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          423 SACSHAGLIDEGRKCFADMTKL----SVKPEV-KHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       423 ~a~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..+...|++++|...++.....    |..++. ..+..+..++.+.|+.++|.+.+++.
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            7888899999999999887654    322233 36667778888999999998888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.05  E-value=9.5e-09  Score=93.70  Aligned_cols=160  Identities=14%  Similarity=0.088  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256          248 IQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY  324 (680)
Q Consensus       248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (680)
                      .+..+...|...|++++|...|+++.+   .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            455566677777788888877777764   255667777777777777777777777776542 2233344444444444


Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFS  404 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  404 (680)
                      .|++++|...++.+.+..                                  ..+...|..+...|...|++++|.+.++
T Consensus        89 ~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~  134 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN----------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK  134 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            444444444444444332                                  2234445555555555555555555555


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          405 QMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       405 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus       135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555531 12234555555555555666666665555544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.05  E-value=2.9e-08  Score=94.43  Aligned_cols=188  Identities=8%  Similarity=-0.022  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE--RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILS  423 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~  423 (680)
                      +..+......|.+.|++++|.+.|++.....  ++...|..+...|...|++++|++.|++..+  ..|+.. .+..+..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~   84 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence            3444445555555555555555555543222  3444444455555556666666666665555  344432 4555555


Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcCh-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHH
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEV-------KHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN---DSVWGALLLAC  492 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~a~  492 (680)
                      .+...|++++|...+++..+.. +.+.       ..|..+...+.+.|++++|++.+++. ...|+   ...|..+-..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            5566666666666666555532 1122       33555555666666666666666654 44554   23344444444


Q ss_pred             HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          493 RIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       493 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      ...|....+++..+.+.++..|..  ......+.+++|...+++..+
T Consensus       164 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          164 YNNGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence            444555556666665554333322  223344556666666666654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.05  E-value=1.3e-09  Score=107.28  Aligned_cols=192  Identities=14%  Similarity=0.126  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE------GVK  412 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~  412 (680)
                      .++..+...|...|++++|...|++....        .| ...+|..+...|...|++++|++.|++..+.      .-.
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34444445555555555555555443211        11 1334555555555566666666655555542      111


Q ss_pred             CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc------C-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C------
Q 037256          413 PD-HITFTSILSACSHAGLIDEGRKCFADMTKL------S-VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P------  477 (680)
Q Consensus       413 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------  477 (680)
                      |+ ..++..+...+...|++++|..+++++.+.      + .+.....+..+...|.+.|++++|.+.+++. .      
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE  203 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            22 234555555566666666666666655543      1 1112344555566666666666666665544 0      


Q ss_pred             ---CCCCHhHHHHHHHHHHHH------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          478 ---LPPNDSVWGALLLACRIH------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       478 ---~~p~~~~~~~ll~a~~~~------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                         ..|........+..+...            +....+......|..+..+..++.+|...|++++|.+.+++..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               112211111111111111            01111111123355556788999999999999999999998865

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=2.7e-08  Score=102.89  Aligned_cols=126  Identities=10%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHH----cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CCC-HhHHH
Q 037256          315 ALILVSACTYLGSRQLGRKFHGYIIN----SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ERN-VSSWN  384 (680)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~i~~~~~~----~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~-~~~~~  384 (680)
                      +..+...+...|++++|...+....+    .+.+....++..+...|.+.|++++|...|++....     .+. ...++
T Consensus       225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  304 (378)
T 3q15_A          225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL  304 (378)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34444444444555555544444433    121223455555666666666666666666654211     111 22344


Q ss_pred             HHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          385 VLIAGYGMHGH---GRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       385 ~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      .+...|...|+   ..+|+..+++   .+..|+. ..+..+...|...|++++|...|++..+
T Consensus       305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44455555565   5555555554   2233333 2445566666777777777777766654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.97  E-value=7.4e-09  Score=115.20  Aligned_cols=161  Identities=13%  Similarity=0.052  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      +|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.++.+++.. +.+...++.+..+|.
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444444444444444444444444321 1123334444444444444444444444444433 234455555666666


Q ss_pred             HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRK  436 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~  436 (680)
                      +.|++++|.+.|++..+..| +..+|+.+...|.+.|++++|++.|++..+  +.|+. ..+..+..++...|++++|.+
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            66666666666665533333 355666666666666666666666666666  44543 356666666666666666666


Q ss_pred             HHHHhhh
Q 037256          437 CFADMTK  443 (680)
Q Consensus       437 ~~~~m~~  443 (680)
                      .++++.+
T Consensus       167 ~~~kal~  173 (723)
T 4gyw_A          167 RMKKLVS  173 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.94  E-value=7.2e-09  Score=101.78  Aligned_cols=214  Identities=13%  Similarity=0.060  Sum_probs=142.5

Q ss_pred             HHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHhhhcchHH
Q 037256          262 VEKARLVFDMMEKR----DLISWNSMLTGYIQNGQASEALLLFDEMQNS------DCKP-NPVTALILVSACTYLGSRQL  330 (680)
Q Consensus       262 ~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~  330 (680)
                      +++|.++++++..+    ...+|..+...|...|++++|+..|++..+.      +-.| ...++..+...+...|++++
T Consensus        24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  103 (283)
T 3edt_B           24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE  103 (283)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence            44455555554332    3567888899999999999999999998754      2223 34577888888999999999


Q ss_pred             HHHHHHHHHHc------C-CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CC-CHhHHHHHHHHHHhcC
Q 037256          331 GRKFHGYIINS------N-MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ER-NVSSWNVLIAGYGMHG  394 (680)
Q Consensus       331 a~~i~~~~~~~------~-~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g  394 (680)
                      |...+..+.+.      . .+....++..+...|...|++++|.+.|++....        .| ...++..+...|...|
T Consensus       104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence            99999888764      1 1334677788888999999999999988877332        22 2457788888899999


Q ss_pred             ChHHHHHHHHHHHHc-------CCCCCHH-HHHHHHHHHHccCC------HHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          395 HGRKALEFFSQMLEE-------GVKPDHI-TFTSILSACSHAGL------IDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       395 ~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      ++++|...+++..+.       ...|... .+..+.......+.      +..+...++.... ..+.....+..+...|
T Consensus       184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~  262 (283)
T 3edt_B          184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALY  262 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence            999999999988763       1233333 23333222222222      2333333322221 1123355788889999


Q ss_pred             HhcCCHHHHHHHHHhC
Q 037256          461 GRAGCLYEAFDMIKQM  476 (680)
Q Consensus       461 ~~~g~~~~A~~~~~~m  476 (680)
                      .+.|++++|.+++++.
T Consensus       263 ~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          263 RRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999999999998864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.88  E-value=5.6e-08  Score=96.47  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=22.7

Q ss_pred             ChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 037256          160 QTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQ  204 (680)
Q Consensus       160 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  204 (680)
                      ++++|...|++           ....|...|++++|++.|.+..+
T Consensus        32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~   65 (292)
T 1qqe_A           32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAAD   65 (292)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence            46777666554           35667777777777777776644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.87  E-value=6.2e-08  Score=96.16  Aligned_cols=165  Identities=10%  Similarity=0.016  Sum_probs=103.3

Q ss_pred             hHHHHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHHc-CCHHHHHHHHhhcCCCCC---C----H
Q 037256          314 TALILVSACTYLGSRQLGRKFHGYIINS----NMK-IDATLRNAVMDMYAKC-GDLDTAENMFNDIHPSER---N----V  380 (680)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~k~-g~~~~A~~~f~~~~~~~~---~----~  380 (680)
                      ++..+..++...|++++|...++..++.    |-. ....+++.+..+|.+. |++++|...|++.....|   +    .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            3444444444444444444444444321    100 0134566777888885 888888888887633222   1    3


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh----
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI------TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV----  450 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~----  450 (680)
                      .+|+.+...|.+.|++++|+..|++..+........      ++..+..++...|++++|...|++..+.  .|+.    
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~  236 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence            467888888999999999999999988843222211      4566777788889999999999988764  2321    


Q ss_pred             --HHHHHHHHHHH--hcCCHHHHHHHHHhC-CCCC
Q 037256          451 --KHYACMVDMLG--RAGCLYEAFDMIKQM-PLPP  480 (680)
Q Consensus       451 --~~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p  480 (680)
                        ..+..++..+.  ..+++++|++.|+++ .+.|
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence              12344555554  467788999999776 3443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.86  E-value=5.2e-07  Score=88.13  Aligned_cols=246  Identities=8%  Similarity=-0.020  Sum_probs=155.1

Q ss_pred             HHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256          256 YARCGNVEKARLVFDMMEKRD-LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF  334 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i  334 (680)
                      ..=.|++..+..-...+...+ ...-.-+.++|...|+++..         ..-.|....+..+.. |...+    +...
T Consensus        23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~   88 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEE   88 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred             HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHH
Confidence            334577777666555543322 22223345677777776531         112333333333322 22222    5566


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256          335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER---NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV  411 (680)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  411 (680)
                      ++.....+ .++......+..+|...|++++|++++.+.....|   +...+-.++..|.+.|+.+.|.+.+++|.+  .
T Consensus        89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~  165 (310)
T 3mv2_B           89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A  165 (310)
T ss_dssp             HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence            66655554 44555556788899999999999999998744443   566788888999999999999999999988  5


Q ss_pred             CC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256          412 KP-----DHITFTSILSAC--SHAG--LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN  481 (680)
Q Consensus       412 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  481 (680)
                      .|     +..+...+..++  ...|  ++++|..+|+++.+.  .|+...-..+..++.+.|++++|.+.++.+ ...|+
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            77     356666666663  3334  899999999998765  344333334444788999999999888754 11000


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      ..                  .--..+|+|+.++..++.+....|+  +|.++++++.+.
T Consensus       244 ~~------------------~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          244 VE------------------QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             TT------------------TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             cc------------------ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            00                  0000146777777777777777776  778888888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.86  E-value=7.3e-09  Score=91.47  Aligned_cols=145  Identities=10%  Similarity=0.073  Sum_probs=108.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL  430 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~  430 (680)
                      |..++...|++++|.+.|+...+..| +...+-.+...|.+.|++++|++.|++.++  +.|+. .+|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence            44556667888888888888755544 355677788888899999999999998888  56654 578888888888899


Q ss_pred             HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256          431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH  510 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~  510 (680)
                      +++|...|++..+.. +-+...|..+...|.+.|++++|.+.+                          ++++++++|++
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~--------------------------~~~al~l~P~~  133 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYW--------------------------VERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHH--------------------------HHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH--------------------------HHHHHHhCcCC
Confidence            999999998888753 335677888888888888877654432                          23456788988


Q ss_pred             CchHHHHHHHHHhcCC
Q 037256          511 TGYFVLMSNIYAASNK  526 (680)
Q Consensus       511 ~~~~~~l~~~~~~~g~  526 (680)
                      +.+|.....++...|+
T Consensus       134 ~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          134 PAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8888888888887775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.83  E-value=2.5e-07  Score=90.39  Aligned_cols=176  Identities=13%  Similarity=0.105  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256          296 ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIH  374 (680)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~  374 (680)
                      |+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566666665544 44555555666666777777777777766655442 2356666777888888888888888888874


Q ss_pred             CCCC-----CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-
Q 037256          375 PSER-----NVSSWNVLIAG--YGMHG--HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-  444 (680)
Q Consensus       375 ~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-  444 (680)
                      ...|     +..+...|..+  ....|  ++.+|..+|+++.+  -.|+..+-..++.++.+.|++++|.+.++.+.+. 
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4456     24444455544  22223  78888888888866  3566444445555788888888888888866543 


Q ss_pred             -C-------CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 -S-------VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 -~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                       .       -+.+..+...+|......|+  +|.++++++
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL  279 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL  279 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence             1       13355566555555555665  666666655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.81  E-value=1.7e-07  Score=91.16  Aligned_cols=190  Identities=11%  Similarity=0.015  Sum_probs=119.3

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV-KPD-HITFT  419 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~  419 (680)
                      +...+-.+...+.+.|++++|...|+++....|+    ...+..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            4445555566666777777777777776444443    45566666677777777777777777776321 112 22445


Q ss_pred             HHHHHHHc--------cCCHHHHHHHHHHhhhcCCCcChHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 037256          420 SILSACSH--------AGLIDEGRKCFADMTKLSVKPEVKHY-----------------ACMVDMLGRAGCLYEAFDMIK  474 (680)
Q Consensus       420 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~~~~  474 (680)
                      .+..++..        .|++++|...|+++.+.. +.+....                 ..+...|.+.|++++|+..++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            55555666        677777777777776642 1111122                 455677788888888887776


Q ss_pred             hCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC---CchHHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 037256          475 QMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH---TGYFVLMSNIYAAS----------NKWREVGKLREDMKNKG  541 (680)
Q Consensus       475 ~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g  541 (680)
                      ++                           ++..|++   +..+..++.+|...          |++++|...++++.+..
T Consensus       173 ~~---------------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          173 AV---------------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HH---------------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HH---------------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            64                           3444553   34677888888766          99999999999998642


Q ss_pred             CCCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHH
Q 037256          542 LKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKM  586 (680)
Q Consensus       542 ~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~  586 (680)
                      .                       .+|...+....+.++...+.+
T Consensus       226 p-----------------------~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          226 P-----------------------DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             T-----------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred             C-----------------------CChHHHHHHHHHHHHHHHHHH
Confidence            1                       234555656666666666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.79  E-value=1.6e-07  Score=80.21  Aligned_cols=129  Identities=16%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG  461 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  461 (680)
                      .|..+...|...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            34555556666666666666666666532 2233455555566666666666666666665543 334455566666666


Q ss_pred             hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          462 RAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       462 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      +.|++++|.+.++++                           ++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus        81 ~~~~~~~A~~~~~~~---------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKA---------------------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHH---------------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH---------------------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666543                           123444555566666666677777777776666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.79  E-value=1.7e-06  Score=92.19  Aligned_cols=194  Identities=13%  Similarity=0.110  Sum_probs=87.4

Q ss_pred             HHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc
Q 037256          265 ARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS  341 (680)
Q Consensus       265 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~  341 (680)
                      +..+|+++..   .+...|-..+.-+.+.|+.++|..+|++....   |+...+..   .++.....+.   +++.+.+.
T Consensus       198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~  268 (493)
T 2uy1_A          198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRK  268 (493)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHH
Confidence            4445555432   24556666666677777777777777777765   43332221   1111111111   11111111


Q ss_pred             CC------------CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 037256          342 NM------------KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWN--VLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       342 ~~------------~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      -.            .....+|...++.+.+.+.++.|..+|++...+..+...|-  +.+... ..++.+.|..+|+...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGL  347 (493)
T ss_dssp             TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHH
T ss_pred             HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHH
Confidence            00            00123444445555555556666666665511111222222  111111 1224555666666555


Q ss_pred             HcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          408 EEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       408 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      +.-  |+ ...+...+.-..+.|+.+.|..+|+.+.     .....|...++.=...|+.+.+.+++++
T Consensus       348 ~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          348 LKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            531  22 2223333444445555555666655542     1344555555544555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.78  E-value=1.5e-07  Score=80.38  Aligned_cols=128  Identities=19%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      .|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.+ +.+...+..+...|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            35556666666667777777666665532 2233444444444444444555544444444332 223334444444444


Q ss_pred             HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +.|++++|.+.|+++....| +...|..+...|...|++++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            44455554444444422221 233444444444444444445444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.75  E-value=2.9e-05  Score=82.69  Aligned_cols=350  Identities=12%  Similarity=0.040  Sum_probs=180.7

Q ss_pred             hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCC-chHHHHHHHHHHhC-CCCC-CcccH
Q 037256           37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGH-CVETLELYSTMRRS-GISS-NSYTF  113 (680)
Q Consensus        37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~  113 (680)
                      +|...+..|-.        |+++.|..+|+.....-|++..|...+.-..+.+. .+....+|+..... |..| +...|
T Consensus        17 vyer~l~~~P~--------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW   88 (493)
T 2uy1_A           17 IMEHARRLYMS--------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY   88 (493)
T ss_dssp             HHHHHHHHHHT--------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred             HHHHHHHHCCC--------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence            34444555555        88999999999998888888899888887766653 45577788877653 4333 44556


Q ss_pred             HHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhcCC----
Q 037256          114 PFVLKACA----SNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK-------------CGQTDDGCKVFDEMS----  172 (680)
Q Consensus       114 ~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~-------------~g~~~~A~~~f~~~~----  172 (680)
                      ...+..+.    ..++++.++.+|+..++.....-...|......-..             .+.+..|+.+++.+.    
T Consensus        89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~  168 (493)
T 2uy1_A           89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR  168 (493)
T ss_dssp             HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            66665443    235677889999998874221112223222211100             012222333332221    


Q ss_pred             CCChhHHHHHHHHHHhCCC-------ccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC
Q 037256          173 VRDLVSWTVMITAYEQAEK-------PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED  245 (680)
Q Consensus       173 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  245 (680)
                      ..+...|...+.--...+.       .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..++.  +.+
T Consensus       169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~  245 (493)
T 2uy1_A          169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG  245 (493)
T ss_dssp             TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred             hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence            1133456555554332211       233566777777642 344566666666677778888888888888877  334


Q ss_pred             hhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256          246 LCIQNSIVAMYARCGNVEKA-RLVFDMME------------KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP  312 (680)
Q Consensus       246 ~~~~~~Li~~y~~~g~~~~A-~~~f~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (680)
                      ...+.    .|+...+.++. ..+.+...            ......|...+....+.++.+.|..+|.+. +.. ..+.
T Consensus       246 ~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~  319 (493)
T 2uy1_A          246 MFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP  319 (493)
T ss_dssp             SHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred             HHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence            33332    22222111111 11111110            001133555555555556666666666666 211 1222


Q ss_pred             hhHHHHHHHHhhhc-chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256          313 VTALILVSACTYLG-SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG  391 (680)
Q Consensus       313 ~t~~~ll~a~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~  391 (680)
                      ..|......-...+ +.+.|+.+++...+.. +.++..+...++...+.|+.+.|..+|+++.   .....|...+.-=.
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~  395 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEF  395 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            22221111111122 4666666666665543 2233445555666666666666666666651   23444555554444


Q ss_pred             hcCChHHHHHHHHHHH
Q 037256          392 MHGHGRKALEFFSQML  407 (680)
Q Consensus       392 ~~g~~~~A~~l~~~m~  407 (680)
                      ..|+.+.+.++++++.
T Consensus       396 ~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          396 MVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHSCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            4555555555555444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.73  E-value=3.1e-07  Score=89.34  Aligned_cols=181  Identities=9%  Similarity=0.023  Sum_probs=95.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC-HhhHH
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-D---LISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN-PVTAL  316 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~  316 (680)
                      +...+-.+...+.+.|++++|...|+++.+  | +   ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344555566666677777777777776654  2 2   44566666667777777777777777665421 111 22344


Q ss_pred             HHHHHHhh--------hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHH
Q 037256          317 ILVSACTY--------LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIA  388 (680)
Q Consensus       317 ~ll~a~~~--------~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~  388 (680)
                      .+..++..        .|+++.|...++.+++.. +.+.....++.......+.       +         ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~-------~---------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAK-------L---------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH-------H---------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHH-------H---------HHHHHHHHH
Confidence            44444444        556666666665555443 1111222111110000000       0         011344556


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcc----------CCHHHHHHHHHHhhhc
Q 037256          389 GYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSACSHA----------GLIDEGRKCFADMTKL  444 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~  444 (680)
                      .|.+.|++++|+..|++..+.  .|+    ...+..+..++...          |++++|...|+++.+.
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            666777777777777777663  333    12455555555544          6667777777766654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.69  E-value=4e-07  Score=86.35  Aligned_cols=46  Identities=13%  Similarity=0.113  Sum_probs=36.0

Q ss_pred             HHHHHHHHccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          497 EIAANYLFQLEPEHT---GYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      ...++++++..|+++   ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus       167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence            333445566677765   5688999999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.68  E-value=4.7e-07  Score=84.66  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=32.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256          283 MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY  357 (680)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y  357 (680)
                      +...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+...+..+...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~  132 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            4445555555555555555554432 2233344444444444444444444444444433 22333444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.67  E-value=5e-07  Score=100.86  Aligned_cols=187  Identities=13%  Similarity=0.044  Sum_probs=132.7

Q ss_pred             hhhcchHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc
Q 037256          323 TYLGSRQLGRKFHGYII--------NSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH  393 (680)
Q Consensus       323 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~  393 (680)
                      ...|++++|.+.++.+.        +.. +.+...+..+...|.+.|++++|.+.|+++....| +...|..+...|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            56677777777777776        322 44567777788888888888888888888754434 567888888888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256          394 GHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM  472 (680)
Q Consensus       394 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  472 (680)
                      |++++|++.|++..+  ..|+. ..+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus       481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888888  45654 577778888888888888 88888887754 34566788888888888888888888


Q ss_pred             HHhC-CCCCCH-hHHHHHHHHHHH----------HHHHHHHHHHccCCCCCchH
Q 037256          473 IKQM-PLPPND-SVWGALLLACRI----------HGEIAANYLFQLEPEHTGYF  514 (680)
Q Consensus       473 ~~~m-~~~p~~-~~~~~ll~a~~~----------~~~~~~~~~~~l~p~~~~~~  514 (680)
                      +++. .+.|+. ..|..+..++..          ...++.+.+..+.++++...
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            8887 566763 345444444322          13344445555555555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.66  E-value=6e-07  Score=81.41  Aligned_cols=156  Identities=11%  Similarity=0.007  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-Hhh
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA-CTY  324 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~  324 (680)
                      ...+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++.....  |+.......... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            44566778888999999999998875   366788888999999999999999998876643  343322221111 112


Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      .+....+...++..++.. +.+...+..+...|.+.|++++|...|+++....|+   ...|..+...|...|+.++|..
T Consensus        87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            222233555666655543 335566666666777777777777777666444443   3456666666666677766766


Q ss_pred             HHHHHH
Q 037256          402 FFSQML  407 (680)
Q Consensus       402 l~~~m~  407 (680)
                      .|++..
T Consensus       166 ~y~~al  171 (176)
T 2r5s_A          166 KYRRQL  171 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.66  E-value=5.5e-07  Score=88.96  Aligned_cols=159  Identities=7%  Similarity=0.019  Sum_probs=118.2

Q ss_pred             hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHH-HHHHh
Q 037256          314 TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLI-AGYGM  392 (680)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li-~~~~~  392 (680)
                      .+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++....|+........ ..+..
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            34444445555566666666666555544 44667778888999999999999999999866667655433333 34667


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHHHHHHHHHHhcCCHHHHH
Q 037256          393 HGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHYACMVDMLGRAGCLYEAF  470 (680)
Q Consensus       393 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~  470 (680)
                      .++.++|+..+++..+.  .|+ ...+..+...+...|++++|...|.++.+..- ..+...+..++..|...|+.++|.
T Consensus       198 ~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            78888899999998884  565 45788888899999999999999999988631 223678889999999999999998


Q ss_pred             HHHHh
Q 037256          471 DMIKQ  475 (680)
Q Consensus       471 ~~~~~  475 (680)
                      ..+++
T Consensus       276 ~~~r~  280 (287)
T 3qou_A          276 SXYRR  280 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.65  E-value=5.5e-07  Score=84.23  Aligned_cols=185  Identities=12%  Similarity=0.077  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      .+-.....+.+.|++++|+..|++..+.  .|+........ .   ..              ..........+.+...|.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHH
Confidence            3444556678889999999999988764  44432211110 0   00              000112233445777888


Q ss_pred             HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC--HHHH
Q 037256          359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL--IDEG  434 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a  434 (680)
                      +.|++++|...|++.....| +...|..+...|...|++++|+..|++..+  +.|+. .++..+...+...|.  .+.+
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~  143 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL  143 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence            88888888888888754444 577888888888888888888888888888  45654 467667666655543  3344


Q ss_pred             HHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHH
Q 037256          435 RKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGA  487 (680)
Q Consensus       435 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~  487 (680)
                      ...++...  ...|....+..+...+...|++++|...|++. .+.|+......
T Consensus       144 ~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  195 (208)
T 3urz_A          144 ETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT  195 (208)
T ss_dssp             HHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             HHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence            44454443  22232223334455566678888888888775 66676554433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.64  E-value=3e-07  Score=102.69  Aligned_cols=183  Identities=13%  Similarity=0.041  Sum_probs=149.0

Q ss_pred             HHcCChhHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256          288 IQNGQASEALLLFDEMQ--------NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       288 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k  359 (680)
                      ...|++++|++.|++..        +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            77899999999999987        321 3345677788888999999999999999998875 4577889999999999


Q ss_pred             cCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      .|++++|.+.|++.....| +...|..+...|.+.|++++ ++.|++..+  ..|+. ..+..+..++...|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999855555 56789999999999999999 999999998  45654 5888899999999999999999


Q ss_pred             HHHhhhcCCCcC-hHHHHHHHHHHHhcC--------CHHHHHHHHHhCC
Q 037256          438 FADMTKLSVKPE-VKHYACMVDMLGRAG--------CLYEAFDMIKQMP  477 (680)
Q Consensus       438 ~~~m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~m~  477 (680)
                      |++..+.  .|+ ...+..+..++...|        ++++|.+.+..++
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            9988865  344 567777777776644        4777888887774

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.60  E-value=3e-06  Score=79.35  Aligned_cols=163  Identities=9%  Similarity=0.012  Sum_probs=108.8

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc----chHHHHHHHHHHHHcCCCCchHHH
Q 037256          275 RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG----SRQLGRKFHGYIINSNMKIDATLR  350 (680)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~i~~~~~~~~~~~~~~~~  350 (680)
                      .++.++..+...|...+++++|+..|++..+.|   +...+..+-..+.. +    +.++|...+....+.|   +...+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            355556666666666666666666666666544   34444455555555 4    6667777776666554   45566


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256          351 NAVMDMYAK----CGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFT  419 (680)
Q Consensus       351 ~~li~~y~k----~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~  419 (680)
                      ..|..+|..    .+++++|.+.|++.....+.   +.++..|...|..    .++.++|+..|++..+.  .++...+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            667777766    67888888888888555553   6778888888877    77888888888888874  23444555


Q ss_pred             HHHHHHHcc-C-----CHHHHHHHHHHhhhcCC
Q 037256          420 SILSACSHA-G-----LIDEGRKCFADMTKLSV  446 (680)
Q Consensus       420 ~ll~a~~~~-g-----~~~~a~~~~~~m~~~~~  446 (680)
                      .|...|... |     ++++|..+|+...+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            666666532 2     78888888888877763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.58  E-value=4.2e-07  Score=99.48  Aligned_cols=163  Identities=12%  Similarity=-0.022  Sum_probs=108.2

Q ss_pred             hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHH
Q 037256          325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFF  403 (680)
Q Consensus       325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~  403 (680)
                      .|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            366777888887776654 34567777788888888888888888887755544 4667788888888888888888888


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc---CCHHHHHHHHHhCCCC
Q 037256          404 SQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA---GCLYEAFDMIKQMPLP  479 (680)
Q Consensus       404 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~  479 (680)
                      ++..+.  .|+ ...+..+..++...|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.++     
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~-----  152 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVR-----  152 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH-----
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHH-----
Confidence            888774  454 4577777778888888888888888877653 33456777777777777   77777766665     


Q ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHH
Q 037256          480 PNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMS  518 (680)
Q Consensus       480 p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~  518 (680)
                                            ++++.+|++...+..++
T Consensus       153 ----------------------~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          153 ----------------------AAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             ----------------------HHHHHTCCCSCHHHHTT
T ss_pred             ----------------------HHHhcCCcccChHHHhC
Confidence                                  44678999988888776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.58  E-value=3.2e-07  Score=91.67  Aligned_cols=93  Identities=9%  Similarity=-0.037  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-H
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER---N----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDH-I  416 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~  416 (680)
                      +++.+..+|.+ |++++|...|++.....+   +    ..+++.+...|.+.|++++|+..|++..+.    +..++. .
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            44455555555 666666666655422111   1    345666666677777777777777766652    111111 1


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      ++..+..++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44445555566677777777777666

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.56  E-value=6.4e-07  Score=81.19  Aligned_cols=152  Identities=11%  Similarity=0.094  Sum_probs=104.6

Q ss_pred             HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HHhcCChHHH
Q 037256          321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAG-YGMHGHGRKA  399 (680)
Q Consensus       321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~~~g~~~~A  399 (680)
                      .+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|++.....|+...+..+... +...+...+|
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a   93 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPE   93 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchH
Confidence            3444445555555554443332 3456777788888889999999999999886555544433322211 2222333457


Q ss_pred             HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC-cChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          400 LEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVK-PEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       400 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      +..+++..+  ..|+ ...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+.++|...+++
T Consensus        94 ~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A           94 LKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            888888888  4665 567888888899999999999999998876422 2356788888999999999999888875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.50  E-value=6.4e-06  Score=77.92  Aligned_cols=193  Identities=10%  Similarity=-0.060  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh----hHH
Q 037256          247 CIQNSIVAMYARCGNVEKARLVFDMMEK--RD----LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV----TAL  316 (680)
Q Consensus       247 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~  316 (680)
                      ..+..+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|+..|+++.+..  |+..    .+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence            3445566677778888888888887653  22    2456667778888888888888888877642  3221    222


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCC
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGH  395 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~  395 (680)
                      .+..++...+..     .+            ..+..+...+...|++++|...|+++....|+. ..+.+....-     
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~-----  140 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV-----  140 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH-----
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH-----
Confidence            222222222110     00            011122233344567777777777775554542 2222111100     


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--CCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256          396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS--VKPEVKHYACMVDMLGRAGCLYEAFDMI  473 (680)
Q Consensus       396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~  473 (680)
                           .+...+.        .....+...+.+.|++++|...|+.+.+..  .+.....+..+..+|.+.|+.++|.+.+
T Consensus       141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                 0000000        011223445566666666666666666541  1111244556666666666666666666


Q ss_pred             HhC
Q 037256          474 KQM  476 (680)
Q Consensus       474 ~~m  476 (680)
                      +.+
T Consensus       208 ~~l  210 (225)
T 2yhc_A          208 KII  210 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.50  E-value=2.9e-06  Score=79.47  Aligned_cols=163  Identities=13%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256          245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK-RDLISWNSMLTGYIQNG----QASEALLLFDEMQNSDCKPNPVTALILV  319 (680)
Q Consensus       245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (680)
                      ++..+..|..+|...+++++|.+.|++..+ .++.++..|...|.. +    ++++|++.|++..+.|   +...+..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg   92 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA   92 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            334444455555555555555555555433 244555555555555 4    5666666666665543   344455555


Q ss_pred             HHHhh----hcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256          320 SACTY----LGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGY  390 (680)
Q Consensus       320 ~a~~~----~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~  390 (680)
                      ..+..    .+++++|...+....+.+.. .++..+..|..+|..    .+++++|...|++......+..++..|...|
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            55544    55666666666666655421 125666777777777    6788888888888743334566777777777


Q ss_pred             Hhc-C-----ChHHHHHHHHHHHHcCC
Q 037256          391 GMH-G-----HGRKALEFFSQMLEEGV  411 (680)
Q Consensus       391 ~~~-g-----~~~~A~~l~~~m~~~g~  411 (680)
                      ... |     +.++|+..|++..+.|.
T Consensus       173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          173 QQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            643 2     78888888888888763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.49  E-value=1.1e-06  Score=87.80  Aligned_cols=216  Identities=10%  Similarity=-0.012  Sum_probs=139.8

Q ss_pred             CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256          190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF  269 (680)
Q Consensus       190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f  269 (680)
                      |++++|.+++++..+..- ..   +      +...++++.|...+..+               ...|...|++++|...|
T Consensus         5 ~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence            556667777666554311 10   0      11135666666655543               34566677777777766


Q ss_pred             HhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhhhcchHHHHHH
Q 037256          270 DMMEK-----RD----LISWNSMLTGYIQNGQASEALLLFDEMQNS----DCKPN--PVTALILVSACTYLGSRQLGRKF  334 (680)
Q Consensus       270 ~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~i  334 (680)
                      .+..+     .+    ..+|+.+...|.+.|++++|+..|++..+.    | .+.  ..++..+...+.. |++++|...
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            65542     11    346777888888889998888888876542    2 222  3466777777877 999999998


Q ss_pred             HHHHHHcCCC-----CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---CC----HhHHHHHHHHHHhcCChHHHHHH
Q 037256          335 HGYIINSNMK-----IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE---RN----VSSWNVLIAGYGMHGHGRKALEF  402 (680)
Q Consensus       335 ~~~~~~~~~~-----~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l  402 (680)
                      ++..++....     ....+++.+...|.+.|++++|...|++.....   ++    ...+..+...+...|++++|+..
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8887653211     114677888999999999999999999874321   11    23566777788888999999999


Q ss_pred             HHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHH
Q 037256          403 FSQMLEEGVKPDH------ITFTSILSACSHAGLIDEGRK  436 (680)
Q Consensus       403 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~  436 (680)
                      |++.. .  .|+.      .....++.++ ..|+.+...+
T Consensus       218 ~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99988 3  4432      1344445544 4566655555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.49  E-value=6.5e-06  Score=81.19  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHHHHH
Q 037256          212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNS-MLTGYI  288 (680)
Q Consensus       212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~  288 (680)
                      ..+..+...+...|++++|...++.+++.. +.+...+..|...|.+.|++++|...++++..  |+...... ....+.
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            334444444455555555555555555443 23444555566666666666666666666553  22221111 112244


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256          289 QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN  368 (680)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~  368 (680)
                      +.++.++|+..|++..+.                                   . +.+...+..+...|...|++++|.+
T Consensus       197 ~~~~~~~a~~~l~~al~~-----------------------------------~-P~~~~~~~~la~~l~~~g~~~~A~~  240 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAE-----------------------------------N-PEDAALATQLALQLHQVGRNEEALE  240 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhcccCccHHHHHHHHhc-----------------------------------C-CccHHHHHHHHHHHHHcccHHHHHH
Confidence            445555555555555443                                   2 2344444555555555555555555


Q ss_pred             HHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256          369 MFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       369 ~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      .|+++....|+   ...+..++..|...|+.++|...|++..
T Consensus       241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            55555333332   3345555555555555555555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.48  E-value=1.1e-05  Score=79.68  Aligned_cols=164  Identities=10%  Similarity=-0.034  Sum_probs=119.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCC---CH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSER---NV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PD----HITFTS  420 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~  420 (680)
                      .+..+.+.|++++|.+.+++.....+   +.    ..+..+...+...|++++|+..|++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46778899999999999998744322   21    12344666777788999999999999984322 22    226888


Q ss_pred             HHHHHHccCCHHHHHHHHHHhhhc-----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256          421 ILSACSHAGLIDEGRKCFADMTKL-----SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI  494 (680)
Q Consensus       421 ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~  494 (680)
                      +...|...|++++|..+|+++.+.     +..+. ..+|..+...|.+.|++++|++.+++.-                 
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al-----------------  223 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI-----------------  223 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------------
Confidence            888999999999999999998853     22222 3477889999999999999999987640                 


Q ss_pred             HHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 037256          495 HGEIAANYLFQ--LEPEHTGYFVLMSNIYAASNK-WREVGKLREDMKN  539 (680)
Q Consensus       495 ~~~~~~~~~~~--l~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~  539 (680)
                            +...+  ..+.-+..|..++.+|.+.|+ +++|.+.+++...
T Consensus       224 ------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          224 ------EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             ------HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence                  00001  112224678899999999995 6999999988753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.46  E-value=5.7e-07  Score=79.14  Aligned_cols=134  Identities=6%  Similarity=-0.035  Sum_probs=98.1

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |+++.|+..|.......| +...|..+...|.+.|++++|++.|++..+..+. +..+|..+..++...|++++|...++
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            889999999988877766 4567778888899999999999999988876432 56677778888888888888888888


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH-hcCC---CCChhHHHHHHHHHHhCCC
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVF-DEMS---VRDLVSWTVMITAYEQAEK  191 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f-~~~~---~~~~~~~~~li~~~~~~g~  191 (680)
                      ..++.. +.++.++..+...|.+.|+.++|.+.| ++..   ..+...|+.....+...|+
T Consensus        90 ~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           90 RSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            888875 345677777777788888776655543 4332   2355566655555555553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.45  E-value=4.7e-07  Score=89.13  Aligned_cols=187  Identities=9%  Similarity=-0.050  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSAC  425 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~  425 (680)
                      ..+..+...|.+.|++++|...|++.....| +...|..+...|.+.|++++|+..+++..+  +.|+. ..+..+..++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            3444455555566666666666655533333 455555566666666666666666666555  34432 3555555566


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHH----HHHHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEV-KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH----GEIAA  500 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~----~~~~~  500 (680)
                      ...|++++|...|++..+..  |+. ..+...+....+......... .......++.... ..+..+...    |...+
T Consensus        83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~-~~l~~l~~~~~~~A~~~~  158 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELH-SYLTRLIAAERERELEEC  158 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHH-HHHHHHHHHHHHHHHTTT
T ss_pred             HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            66666666666666555431  110 000011111111111111111 1112222222222 222222211    33344


Q ss_pred             HHHHccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 037256          501 NYLFQLEPEHTGYFVLMSNIYAAS-NKWREVGKLREDMKNK  540 (680)
Q Consensus       501 ~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  540 (680)
                      +++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            456677887776666777777776 7799999999988653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.45  E-value=6.5e-06  Score=76.84  Aligned_cols=144  Identities=13%  Similarity=-0.096  Sum_probs=82.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256          250 NSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ  329 (680)
Q Consensus       250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (680)
                      ..+...|...|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence            3455667777888888888887777777777777777778888888887777776542 223344444444444444444


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +|...++.+.+.........       |            ........| ....|..+...|...|++++|.+.|++..+
T Consensus        89 ~A~~~~~~al~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLID-------Y------------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEE-------C------------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCccHHH-------H------------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            44444444443221100000       0            000000001 125666777777777777777777777776


Q ss_pred             cCCCCCH
Q 037256          409 EGVKPDH  415 (680)
Q Consensus       409 ~g~~p~~  415 (680)
                        +.|+.
T Consensus       150 --~~p~~  154 (213)
T 1hh8_A          150 --MKSEP  154 (213)
T ss_dssp             --TCCSG
T ss_pred             --cCccc
Confidence              45544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.45  E-value=0.00014  Score=71.67  Aligned_cols=212  Identities=10%  Similarity=-0.027  Sum_probs=126.0

Q ss_pred             ccHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccC--ChHHHHHHHHHHHHccCCCChhHHHHHHHHH----Hhc---CC
Q 037256          192 PEEALILFQKTQQEGLLSDSVT-IVSVASAVGQLG--DVLKAQAVHGYAICNAFLEDLCIQNSIVAMY----ARC---GN  261 (680)
Q Consensus       192 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~~~---g~  261 (680)
                      .++|++++.+++..  .|+..| ++.--..+...+  +++++.+.++.+++.. +.+..+|+.--..+    .+.   ++
T Consensus        49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            35677777777664  344333 444444555555  7777777777776654 33444454443333    444   67


Q ss_pred             HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc------hHH
Q 037256          262 VEKARLVFDMMEK---RDLISWNSMLTGYIQNGQAS--EALLLFDEMQNSDCKPNPVTALILVSACTYLGS------RQL  330 (680)
Q Consensus       262 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~  330 (680)
                      ++++.++++.+.+   +|..+|+.-...+.+.|.++  ++++.+.++.+.. +-|...|+.-.......+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            7788888877764   46677877777777778877  8888888888764 3355555554444444444      566


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH-HHHHHhhcCCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT-AENMFNDIHPS----ERNVSSWNVLIAGYGMHGHGRKALEFFSQ  405 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~-A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~  405 (680)
                      +.+....++... +.|...|+-+-..+.+.|+... +..+..++...    .++...+..+...|.+.|+.++|+++++.
T Consensus       205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            666666666554 4466666666666666665333 33344443221    23445555566666666666666666666


Q ss_pred             HHH
Q 037256          406 MLE  408 (680)
Q Consensus       406 m~~  408 (680)
                      +.+
T Consensus       284 l~~  286 (306)
T 3dra_A          284 LKS  286 (306)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.45  E-value=6.1e-06  Score=79.52  Aligned_cols=140  Identities=9%  Similarity=-0.018  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSA  424 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a  424 (680)
                      ..+.-.+..++...|++++|.++|+.+....|+......+...+.+.+++++|+..|++..... .|.  ...+..+-.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence            3455567788889999999999999997667765466667778889999999999998554311 121  2356777888


Q ss_pred             HHccCCHHHHHHHHHHhhhcCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHH
Q 037256          425 CSHAGLIDEGRKCFADMTKLSVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGA  487 (680)
Q Consensus       425 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~  487 (680)
                      +...|++++|+..|++.......|.  .........++.+.|+.++|...|+++ ...|+...+.+
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~a  246 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAA  246 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence            9999999999999999875443253  445667778899999999999999987 44566334433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.43  E-value=2.4e-06  Score=72.48  Aligned_cols=92  Identities=11%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ..|......|.+.|++++|++.|++.++  +.|+ ...|..+..++.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence            3455666667777777777777777766  3443 4466666667777777777777777776653 3445667777777


Q ss_pred             HHhcCCHHHHHHHHHh
Q 037256          460 LGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~  475 (680)
                      |...|++++|.+.|++
T Consensus        91 ~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           91 LVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHH
Confidence            7777777777666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.43  E-value=8.7e-06  Score=75.96  Aligned_cols=123  Identities=10%  Similarity=-0.033  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHA  428 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~  428 (680)
                      +..+...|.+.|++++|.+.|++.  ..++...|..+...|...|++++|++.|++..+.  .| +...+..+..++...
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHc
Confidence            445677788999999999999998  5678889999999999999999999999999985  45 456888888999999


Q ss_pred             CCHHHHHHHHHHhhhcC--------------CCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          429 GLIDEGRKCFADMTKLS--------------VKP-EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       429 g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      |++++|.+.|++..+..              ..| ....+..+..+|.+.|++++|.+.+++.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999998852              111 2367888889999999999999888875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.43  E-value=1.6e-06  Score=76.01  Aligned_cols=102  Identities=12%  Similarity=0.010  Sum_probs=75.4

Q ss_pred             CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037256          411 VKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALL  489 (680)
Q Consensus       411 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll  489 (680)
                      +.|+.. .+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|.+.|++++|++.|++              
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~--------------   95 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAV--------------   95 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHH--------------
Confidence            445443 55566666777777777777777777653 34566777777888888888887777654              


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          490 LACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       490 ~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                                   +++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus        96 -------------al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           96 -------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             -------------HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                         35678888888888888888888888888888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.42  E-value=3e-05  Score=76.42  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=106.9

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhc--chHHHHHHHHHHHHcCCCCchHHHHHHHHHH----HHc---C
Q 037256          292 QASEALLLFDEMQNSDCKPNPV-TALILVSACTYLG--SRQLGRKFHGYIINSNMKIDATLRNAVMDMY----AKC---G  361 (680)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~k~---g  361 (680)
                      ..++|++++.++...  .|+.. .++.--.++...+  +++++...++.++..+ +-+..+|+.-...+    .+.   +
T Consensus        48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence            345677776666653  33332 3333333444444  5555555555555443 22333443333333    333   4


Q ss_pred             CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HH
Q 037256          362 DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGR--KALEFFSQMLEEGVKPDHITFTSILSACSHAGL------ID  432 (680)
Q Consensus       362 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~  432 (680)
                      +++++.+.++.+... .+|..+|+.-.-.+.+.|.++  ++++.++++.+... -|...|+.-.....+.+.      ++
T Consensus       125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence            445555555544222 234444544444444444444  55555555554321 122333333333333333      44


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccC---CC
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLE---PE  509 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~---p~  509 (680)
                      ++++.++.++... +-|...|+.+-..+.+.|+..++                          ......++++++   |.
T Consensus       204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~  256 (306)
T 3dra_A          204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ--------------------------LEEFSLQFVDLEKDQVT  256 (306)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG--------------------------GHHHHHTTEEGGGTEES
T ss_pred             HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH--------------------------HHHHHHHHHhccCCCCC
Confidence            4444444444332 22333333333333333332111                          122233344444   77


Q ss_pred             CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          510 HTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      ++..+..++.+|.+.|+.++|.++++.+.+
T Consensus       257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          257 SSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            888899999999999999999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.42  E-value=1.5e-06  Score=95.13  Aligned_cols=149  Identities=6%  Similarity=-0.027  Sum_probs=109.3

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |++++|.+.|++.....| +...|..+...+.+.|++++|++.|++..+... -+...+..+..++...|++++|.+.++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            889999999999988877 577899999999999999999999999987642 256678888888999999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhC---CCccHHHHHHHHHHHcC
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQA---EKPEEALILFQKTQQEG  206 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g  206 (680)
                      +.++.. +.+...+..+...|.+.|++++|.+.|++..   ..+...+..+...+...   |++++|.+.|++..+.+
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999875 4567788888889999999999999888764   23567788888888888   88888999888887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.38  E-value=1.5e-06  Score=83.69  Aligned_cols=203  Identities=14%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             CCChHHHHHHhhhccCCCC-CcchHHHH-------HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCh
Q 037256           55 YGEPNTARSLFNSIHNDKS-YSFLWNTM-------IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI  126 (680)
Q Consensus        55 ~g~~~~A~~~f~~~~~~~p-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  126 (680)
                      .++++.|++.|.++.+..| ....|+.+       ...+.+.++..+++..+.+-.+  +.|+......-|     .|-+
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~-----~g~y   91 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI-----GGLY   91 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC-----CTTT
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc-----CCcc
Confidence            3999999999999998888 46689888       4566666666666666555443  333221100000     0000


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 037256          127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--RDLVSWTVMITAYEQAEKPEEALILFQKTQQ  204 (680)
Q Consensus       127 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  204 (680)
                      .       . ++.-+..-..+.-.+...+...|++++|.++|+.+..  |+......+...+.+.+++++|+..|+....
T Consensus        92 ~-------~-~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~  163 (282)
T 4f3v_A           92 G-------D-ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK  163 (282)
T ss_dssp             C-------C-CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred             c-------c-cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence            0       0 0000000111222333444445555555555555432  2111333333445555555555555543322


Q ss_pred             cCCCCC--HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256          205 EGLLSD--SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED--LCIQNSIVAMYARCGNVEKARLVFDMME  273 (680)
Q Consensus       205 ~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~  273 (680)
                      .. .|.  ...+..+-.++...|++++|...+++.......|.  ......+..++.+.|+.++|..+|+++.
T Consensus       164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 000  12334444455555555555555555543221122  2233444455555566666666655554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.37  E-value=1.7e-06  Score=75.82  Aligned_cols=102  Identities=8%  Similarity=0.037  Sum_probs=73.1

Q ss_pred             CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037256          411 VKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALL  489 (680)
Q Consensus       411 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll  489 (680)
                      +.|+.. .+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++              
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------   80 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSY--------------   80 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH--------------
Confidence            445433 55556666777777777777777776653 34566677777777778888777776654              


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          490 LACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       490 ~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                                   +++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus        81 -------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           81 -------------GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             -------------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                         34567888888888888888888888888888887653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.35  E-value=2.2e-05  Score=77.52  Aligned_cols=61  Identities=5%  Similarity=-0.173  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhhcc-hHHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNS----DCKPN-PVTALILVSACTYLGS-RQLGRKFHGYII  339 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~i~~~~~  339 (680)
                      +|..+...|.+.|++++|+..+++..+.    +..+. ..++..+..++...|+ .++|...++...
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            3444555555555555555555544321    11111 3344445555555552 355555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.33  E-value=9e-06  Score=67.95  Aligned_cols=95  Identities=17%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4455566666666666666666666666532 2234455566666666666666666666666542 3345556666666


Q ss_pred             HHhcCCHHHHHHHHHhC
Q 037256          460 LGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~m  476 (680)
                      |.+.|++++|.+.++++
T Consensus        87 ~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHH
Confidence            66666666666666543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.33  E-value=3.7e-06  Score=85.05  Aligned_cols=129  Identities=10%  Similarity=-0.024  Sum_probs=102.3

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----------------ITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ...|..+...|.+.|++++|+..|++..+.  .|+.                ..|..+..++.+.|++++|...+++..+
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677777777788888888888887773  4443                6788888888899999999999998887


Q ss_pred             cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256          444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA  523 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~  523 (680)
                      .. +.+...|..+..+|...|++++|++.|++                           +++++|+++.++..++.++..
T Consensus       225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~---------------------------al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQK---------------------------VLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHCSSCHHHHHHHHHHHHH
T ss_pred             hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------HHHHCCCCHHHHHHHHHHHHH
Confidence            64 44677888888999999999998887765                           456789898999999999999


Q ss_pred             cCChhHH-HHHHHHHH
Q 037256          524 SNKWREV-GKLREDMK  538 (680)
Q Consensus       524 ~g~~~~A-~~~~~~m~  538 (680)
                      .|++++| .+.++.|.
T Consensus       277 ~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          277 IRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998 44666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.32  E-value=1.3e-05  Score=71.23  Aligned_cols=128  Identities=14%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ..|..+...+...|++++|...|++..+.  .| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            45667777788888888888888888774  34 45577777778888888888888888887753 4456778888888


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHH--HHHHHHhcCChhHHHHHHHHH
Q 037256          460 LGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVL--MSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      +.+.|++++|.+.+++.                           +++.|+++..+..  ++..+...|++++|.+.++..
T Consensus        91 ~~~~~~~~~A~~~~~~a---------------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           91 NMALGKFRAALRDYETV---------------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHTTCHHHHHHHHHHH---------------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHH---------------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            88889888888877654                           3445665555533  344477788899988888776


Q ss_pred             H
Q 037256          538 K  538 (680)
Q Consensus       538 ~  538 (680)
                      .
T Consensus       144 ~  144 (166)
T 1a17_A          144 R  144 (166)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.30  E-value=1.8e-05  Score=78.15  Aligned_cols=167  Identities=11%  Similarity=0.012  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA  358 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~  358 (680)
                      .+...+..+...|++++|++.+.+..+.... ...... .                            ...+..+...|.
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~-~----------------------------~~~~~~~~~~~~  126 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQ-F----------------------------LQWQYYVAAYVL  126 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHH-H----------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHH-H----------------------------HHHHHHHHHHHh
Confidence            3445566777888888888888777664321 111100 0                            011122334445


Q ss_pred             HcCCHHHHHHHHhhcCCC-----CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPS-----ERN--VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-GVKPD-----HITFTSILSAC  425 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~-----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a~  425 (680)
                      ..|++++|...|++....     .+.  ..+|+.+...|...|++++|+..|++..+. ...|+     ..++..+...|
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            555666666655544211     111  235566666666666666666666665521 01111     13555566666


Q ss_pred             HccCCHHHHHHHHHHhhhc----CCCc-ChHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 037256          426 SHAGLIDEGRKCFADMTKL----SVKP-EVKHYACMVDMLGRAGCLYEA-FDMIKQ  475 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~  475 (680)
                      ...|++++|...+++..+.    +... -...|..+...|.+.|++++| ...+++
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            6666666666666665543    1111 144566666666666666666 444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.30  E-value=1.9e-06  Score=75.61  Aligned_cols=100  Identities=9%  Similarity=-0.021  Sum_probs=65.4

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD  458 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  458 (680)
                      ...|..+...+.+.|++++|+..|++..+  ..|+ ...|..+..++...|++++|...|++..+.. +.+...|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            44566666677777777777777777776  3454 3466666667777777777777777776653 334556666777


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCCCH
Q 037256          459 MLGRAGCLYEAFDMIKQM-PLPPND  482 (680)
Q Consensus       459 ~~~~~g~~~~A~~~~~~m-~~~p~~  482 (680)
                      +|.+.|++++|.+.|++. .+.||.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            777777777777777664 333443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.28  E-value=5.7e-05  Score=74.56  Aligned_cols=170  Identities=9%  Similarity=-0.068  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NV------SSWNVLIAGYGMHGHGRKALEFFSQMLEEGV---KPD--HI  416 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~  416 (680)
                      .+...+..+...|++++|.+.+.+.....+ +.      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            444567788899999999999986633322 11      2244466677888999999999999886321   122  34


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKL----SVKP--EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLL  490 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~  490 (680)
                      +++.+...|...|++++|..+|++..+.    +..+  ....|..+...|.+.|++++|++.+++.-             
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal-------------  223 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI-------------  223 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH-------------
Confidence            7888889999999999999999998743    2122  12588889999999999999999998741             


Q ss_pred             HHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 037256          491 ACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV-GKLREDMKN  539 (680)
Q Consensus       491 a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~  539 (680)
                             ..... ....+.-...|..++.+|.+.|++++| ...+++...
T Consensus       224 -------~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          224 -------EISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             -------HHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -------HHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                   00000 001111145788999999999999999 777777653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.27  E-value=1e-05  Score=68.66  Aligned_cols=93  Identities=12%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD  458 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  458 (680)
                      ...|..+...+...|++++|++.|++..+  ..| +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44555556666666666666666666655  233 33455555555666666666666666655542 234455555666


Q ss_pred             HHHhcCCHHHHHHHHHh
Q 037256          459 MLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       459 ~~~~~g~~~~A~~~~~~  475 (680)
                      .|.+.|++++|.+.+++
T Consensus        93 ~~~~~~~~~~A~~~~~~  109 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQK  109 (133)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHH
Confidence            66666666666655554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.25  E-value=1.6e-05  Score=67.10  Aligned_cols=92  Identities=16%  Similarity=0.089  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ..|..+...+...|++++|+..|++....  .| +...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            34555555556666666666666666553  23 33455555555666666666666666655542 2334555566666


Q ss_pred             HHhcCCHHHHHHHHHh
Q 037256          460 LGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~  475 (680)
                      +.+.|++++|.+.+++
T Consensus        90 ~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHH
Confidence            6666666666655544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=1.6e-05  Score=68.89  Aligned_cols=95  Identities=8%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++                     
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------   77 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSY---------------------   77 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------
Confidence            44445556666777777777777766543 34556666677777777777777666654                     


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                            +++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus        78 ------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           78 ------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             ------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  3456777888888888888888888888888887765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.21  E-value=1.4e-06  Score=80.69  Aligned_cols=156  Identities=10%  Similarity=-0.052  Sum_probs=100.4

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------------H
Q 037256          355 DMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-----------------I  416 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----------------~  416 (680)
                      ......|++++|.+.|+.-... ......|..+...+...|++++|+..|++..+.  .|+.                 .
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHH
Confidence            3344456666666666533111 113456777788888899999999999988873  3321                 5


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++                     
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~---------------------  147 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK---------------------  147 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH---------------------
Confidence            67777778888999999999999888763 44677788888889999999988887765                     


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVG-KLREDMKNK  540 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~  540 (680)
                            +++++|+++..+..++.++...++.+++. ..++.|-.+
T Consensus       148 ------al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          148 ------AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             ------HHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             ------HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  34567888888888888888888877776 555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.21  E-value=1.2e-05  Score=74.22  Aligned_cols=48  Identities=13%  Similarity=-0.053  Sum_probs=25.5

Q ss_pred             hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          258 RCGNVEKARL---VFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       258 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      ..|++++|.+   .+..-+.....++..+...+...|++++|...+++..+
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   54 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ   54 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3455666665   44332223445566666666666666666666666543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.18  E-value=3.2e-05  Score=64.45  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC  425 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  425 (680)
                      ...+..+...|.+.|++++|.+.|+++.... .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            4556667777777788888877777764333 346677777778888888888888888877742 23455677777778


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR  462 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  462 (680)
                      ...|++++|...++++.+.. +.+...+..+...+.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            88888888888888777653 2334444455444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.17  E-value=3.9e-05  Score=64.97  Aligned_cols=118  Identities=10%  Similarity=-0.028  Sum_probs=91.3

Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037256          344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSI  421 (680)
Q Consensus       344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l  421 (680)
                      +.+...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|++.+++..+.  .| +...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence            34566777788888889999999999988755544 6778888888899999999999999998884  44 45677888


Q ss_pred             HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256          422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG  464 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  464 (680)
                      ..++...|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            888899999999999999888753 234456666666666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.17  E-value=1.5e-05  Score=78.36  Aligned_cols=88  Identities=11%  Similarity=-0.053  Sum_probs=55.2

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 037256          217 VASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQA  293 (680)
Q Consensus       217 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~  293 (680)
                      +...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+   .+...|..+..+|...|++
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY   88 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            3334444444444444444444432 23455666677777777777777777777654   3456677777778888888


Q ss_pred             hHHHHHHHHHHh
Q 037256          294 SEALLLFDEMQN  305 (680)
Q Consensus       294 ~~A~~~~~~m~~  305 (680)
                      ++|+..|++..+
T Consensus        89 ~~A~~~~~~al~  100 (281)
T 2c2l_A           89 DEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888777665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.17  E-value=2.4e-05  Score=69.32  Aligned_cols=126  Identities=10%  Similarity=0.001  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC  425 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~  425 (680)
                      ..+..+...+...|++++|...|++.....| +...|..+...|...|++++|++.+++..+.  .| +...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            3455566777778888888888877643333 5677777888888888888888888888774  34 345677777778


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHH--HHHHHHHHhcCCHHHHHHHHHhC
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHY--ACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ...|++++|...|++..+.. +.+...+  ..++..+.+.|++++|++.+.+.
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            88888888888888877652 2233333  33344466778888887777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.16  E-value=2e-05  Score=66.66  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSAC  425 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~  425 (680)
                      ..+......|.+.|++++|.+.|++.....| +...|..+..+|.+.|++++|++.|++.++  +.|+ ...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHH
Confidence            3455667778888888888888887744444 577788888888888888888888888887  4554 44777788888


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACM  456 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  456 (680)
                      ...|++++|.+.|++..+.. +-+...+..|
T Consensus        92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l  121 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVD-PSNEEAREGV  121 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence            88888888888888887753 2234444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.16  E-value=9.6e-06  Score=74.88  Aligned_cols=147  Identities=12%  Similarity=0.011  Sum_probs=64.5

Q ss_pred             cCChHHHHH---HHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCChHH
Q 037256          158 CGQTDDGCK---VFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE----GLLS-DSVTIVSVASAVGQLGDVLK  229 (680)
Q Consensus       158 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~  229 (680)
                      .|++++|.+   .+..-+.....+++.+...+...|++++|+..|++....    +..| ....+..+...+...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            344555554   333322223344555555555555555555555554431    1111 11233333444444445444


Q ss_pred             HHHHHHHHHHcc--CC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChh
Q 037256          230 AQAVHGYAICNA--FL----EDLCIQNSIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQAS  294 (680)
Q Consensus       230 a~~~~~~~~~~g--~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~  294 (680)
                      |...+...++..  ..    ....++..+...|...|++++|...+++...     .+    ..++..+...+...|+++
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  164 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL  164 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence            444444433320  00    0122344455555555555555555554321     11    122344555555666666


Q ss_pred             HHHHHHHHHH
Q 037256          295 EALLLFDEMQ  304 (680)
Q Consensus       295 ~A~~~~~~m~  304 (680)
                      +|.+.+++..
T Consensus       165 ~A~~~~~~al  174 (203)
T 3gw4_A          165 EAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.16  E-value=0.0012  Score=65.65  Aligned_cols=174  Identities=11%  Similarity=-0.042  Sum_probs=104.8

Q ss_pred             HHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccC-ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhc-C
Q 037256          184 TAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVSVASAVGQLG-DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARC-G  260 (680)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g  260 (680)
                      ....+.+..++|++++.+++..+  |+.. .++.--..+...+ .++++...++.+++.. +.+..+|+--...+.+. +
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence            33344455567888888887753  4433 3444444444555 4777777777777654 34555666655555555 5


Q ss_pred             -CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-
Q 037256          261 -NVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQAS--------EALLLFDEMQNSDCKPNPVTALILVSACTYLGS-  327 (680)
Q Consensus       261 -~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-  327 (680)
                       +.+++.++++.+.+   +|..+|+.-...+.+.|.++        ++++.+.++.+.. +-|...|+.......+.+. 
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence             67778888887775   35566766555555555555        7777777777654 3355566555555555553 


Q ss_pred             ------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC
Q 037256          328 ------RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       328 ------~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~  362 (680)
                            ++++.+....++... +.|...|+-+-..+.+.|+
T Consensus       218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence                  455666666665554 4456666665555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.15  E-value=1.3e-05  Score=70.16  Aligned_cols=94  Identities=15%  Similarity=0.054  Sum_probs=55.7

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD  458 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  458 (680)
                      ...+..+...+.+.|++++|+..|++...  ..| +...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34455555666666666666666666665  234 33455555556666666666666666666543 234455556666


Q ss_pred             HHHhcCCHHHHHHHHHhC
Q 037256          459 MLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       459 ~~~~~g~~~~A~~~~~~m  476 (680)
                      +|...|++++|.+.|++.
T Consensus        98 ~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            666666666666666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.12  E-value=0.0016  Score=64.87  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=149.2

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256           78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS-LILEGKVVHGDIIRTGFLSDSYVQAALVDMYA  156 (680)
Q Consensus        78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~  156 (680)
                      |+.+-....+.+..++|++++++++...+. +...|+.--..+...+ .++++...++.+++.. +.+..+|+.-...+.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            444444455566667899999999876422 3445666666666677 5899999999998865 556778887777777


Q ss_pred             hc-C-ChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCcc--------HHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 037256          157 KC-G-QTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPE--------EALILFQKTQQEGLLSDSVTIVSVASAVGQ  223 (680)
Q Consensus       157 ~~-g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  223 (680)
                      +. + +.+++++.++.+.+.   |-.+|+--...+.+.|.++        ++++.++++.+.. +-|...|+.....+.+
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred             HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            66 6 888999999888754   5567776555555555666        8999999988865 3466677776666666


Q ss_pred             cCC-------hHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhcCC--
Q 037256          224 LGD-------VLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV--------------------EKARLVFDMMEK--  274 (680)
Q Consensus       224 ~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~--------------------~~A~~~f~~m~~--  274 (680)
                      .+.       ++++.+....+++.. +.|...|+-+-..+.+.|+-                    ....++..++..  
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP  292 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred             ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence            665       566777777777654 55677777766666666543                    333333333322  


Q ss_pred             -------CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          275 -------RDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       275 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                             +....+..+...|...|+.++|.++++.+.+
T Consensus       293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                   3445666677777777777777777777654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.09  E-value=4.1e-05  Score=64.40  Aligned_cols=118  Identities=11%  Similarity=0.013  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS  423 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~  423 (680)
                      +...+..+...+...|++++|...|++.....| +...|..+...|...|++++|++.+++..+.  .|+ ...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence            345566677777888888888888887643333 5677888888888888888888888888874  344 457777777


Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL  466 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  466 (680)
                      .+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            8888888888888888887753 33556666777777766653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.09  E-value=1.5e-05  Score=80.42  Aligned_cols=128  Identities=14%  Similarity=0.010  Sum_probs=98.3

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                      +...+..+...|.+.|++++|...|++.....|+                ...|..+..+|.+.|++++|+..|++.++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455666777777888888888888776443443                478888888999999999999999999884


Q ss_pred             CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 037256          410 GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF-DMIKQM  476 (680)
Q Consensus       410 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m  476 (680)
                        .|+ ...+..+..++...|++++|...|++..+.. +.+...+..+..++.+.|+.++|. ..+++|
T Consensus       226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              454 5578888888999999999999999988764 345677888888888888888883 455444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.07  E-value=1.8e-05  Score=71.46  Aligned_cols=117  Identities=10%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHcCCH--HHH
Q 037256          290 NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM-YAKCGDL--DTA  366 (680)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~-y~k~g~~--~~A  366 (680)
                      .|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+..+ |.+.|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            344444444444444322 2233333334444444444444444444443332 2233344444444 4444554  555


Q ss_pred             HHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          367 ENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       367 ~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ...|++.....| +...|..+...|...|++++|...|++..+
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            555554422222 244445555555555555555555555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.04  E-value=0.001  Score=65.89  Aligned_cols=188  Identities=10%  Similarity=0.095  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC--CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 037256          328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG--DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGH-GRKALEFF  403 (680)
Q Consensus       328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~l~  403 (680)
                      ++.+..++..+.... +-+..+|+.-.-.+.+.|  .++++...++.+... ..|..+|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            456666666666654 456677776666666766  377888888777443 4567778777777777777 47888888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc------
Q 037256          404 SQMLEEGVKPDHITFTSILSACSHA--------------GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA------  463 (680)
Q Consensus       404 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------  463 (680)
                      +++++.. .-|...|+.......+.              +.++++++.++...... +-|...|+-+--.+.+.      
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence            8888743 22444555544444433              45677777777777653 44555565444444443      


Q ss_pred             -----CCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH----------HHHHHHHHHccCCCCCchHHHHHH
Q 037256          464 -----GCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH----------GEIAANYLFQLEPEHTGYFVLMSN  519 (680)
Q Consensus       464 -----g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~----------~~~~~~~~~~l~p~~~~~~~~l~~  519 (680)
                           +.++++++.++++ .+.||. .|..+-.+....          ....+.++.+++|...+.|.-+..
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence                 3456666666665 445554 454222222111          233455666667765555544433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=0.0001  Score=63.65  Aligned_cols=95  Identities=14%  Similarity=0.033  Sum_probs=63.0

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      +...|..+...+...|++++|++.|++..+  ..|+    ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            455666666777777777777777777766  4555    3456666666777777777777777766642 23455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+..+|.+.|++++|.+.+++.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            6777777777777777666654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.99  E-value=2.1e-05  Score=70.92  Aligned_cols=114  Identities=11%  Similarity=0.137  Sum_probs=54.8

Q ss_pred             cCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHccCCH--HHH
Q 037256          360 CGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSA-CSHAGLI--DEG  434 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a-~~~~g~~--~~a  434 (680)
                      .|++++|...|++..... .+...|..+...|...|++++|+..|++..+.  .| +...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            344444544444432222 23445555555555555555555555555552  23 22344444444 4455555  555


Q ss_pred             HHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          435 RKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       435 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ...++.+.+.. +.+...+..+...|.+.|++++|...+++.
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            55555555442 223444555555555566666665555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.98  E-value=4.7e-05  Score=62.10  Aligned_cols=97  Identities=14%  Similarity=0.028  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++.                    
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a--------------------   66 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV--------------------   66 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------
Confidence            44445555556666666666666655542 234455566666666777777766666543                    


Q ss_pred             HHHHHHHHccCCC--CCchHHHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 037256          497 EIAANYLFQLEPE--HTGYFVLMSNIYAAS-NKWREVGKLREDMKNKG  541 (680)
Q Consensus       497 ~~~~~~~~~l~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g  541 (680)
                             +++.|+  ++..+..++.+|... |++++|.+.++...+..
T Consensus        67 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           67 -------INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             -------HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             -------HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence                   344565  666677777777777 77777777777776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.00011  Score=61.78  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      .|..+...+.+.|++++|+..|++..+.  .| +...+..+..++...|++++|...+++..+.. +.+...|..+..+|
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            3444445555555555555555555552  23 23345555555555555555555555555442 22344555555555


Q ss_pred             HhcCCHHHHHHHHHhC
Q 037256          461 GRAGCLYEAFDMIKQM  476 (680)
Q Consensus       461 ~~~g~~~~A~~~~~~m  476 (680)
                      ...|++++|.+.+++.
T Consensus        83 ~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           83 IAVKEYASALETLDAA   98 (126)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHH
Confidence            5556655555555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.96  E-value=8.2e-05  Score=64.27  Aligned_cols=105  Identities=11%  Similarity=0.016  Sum_probs=67.4

Q ss_pred             HHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC
Q 037256          369 MFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSV  446 (680)
Q Consensus       369 ~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~  446 (680)
                      .|+++....| +...+..+...+.+.|++++|+..|++....  .| +...|..+..++...|++++|...|++..+.. 
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-   82 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-   82 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            3444433333 2345556666677777777777777777763  44 34466666667777777777777777777653 


Q ss_pred             CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +.+...+..+..+|...|++++|.+.+++.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344556667777777777777777777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=0.00023  Score=58.43  Aligned_cols=93  Identities=15%  Similarity=0.080  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ..|..+...+...|++++|...|++....  .| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            44555566666666666666666666653  33 34455556666666677777777666666543 2345566666666


Q ss_pred             HHhcCCHHHHHHHHHhC
Q 037256          460 LGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~m  476 (680)
                      +...|++++|.+.+++.
T Consensus        82 ~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            77777777776666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.95  E-value=6.8e-05  Score=63.41  Aligned_cols=91  Identities=10%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcC----hHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPE----VKHYAC  455 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~  455 (680)
                      +..+...|.+.|++++|++.|++.++  +.|+. ..|..+..+|...|++++|++.+++.++.  ...++    ...|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34444444444555555555554444  23332 24444444445555555555555444432  10111    123444


Q ss_pred             HHHHHHhcCCHHHHHHHHHh
Q 037256          456 MVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       456 li~~~~~~g~~~~A~~~~~~  475 (680)
                      +...+...|++++|++.|++
T Consensus        89 lg~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            44555555555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.94  E-value=0.0001  Score=78.25  Aligned_cols=121  Identities=14%  Similarity=0.098  Sum_probs=94.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG  464 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  464 (680)
                      +...+.+.|++++|++.|++..+  ..|+ ..++..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            33445678899999999999888  4565 5688888889999999999999999988864 445778888999999999


Q ss_pred             CHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChhHHHHHHHH
Q 037256          465 CLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNI--YAASNKWREVGKLRED  536 (680)
Q Consensus       465 ~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~  536 (680)
                      ++++|++.+++.                           +++.|+++..+..++.+  +.+.|++++|++.+++
T Consensus        89 ~~~eA~~~~~~a---------------------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           89 KFRAALRDYETV---------------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             CHHHHHHHHHHH---------------------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             CHHHHHHHHHHH---------------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999998888653                           45678888888888887  8888999999999884

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.93  E-value=5.9e-05  Score=63.81  Aligned_cols=103  Identities=11%  Similarity=0.053  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--------HHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--------ITF  418 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~  418 (680)
                      ..+..+...|.+.|++++|.+.|++.....| +...|+.+..+|.+.|++++|++.+++.++.  .|+.        .+|
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHH
Confidence            3455677888888999999999888754444 4778888888899999999999999888763  3321        356


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      ..+..++...|++++|++.|++..+.  .|+.....
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  120 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence            66777888889999999999887764  45655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.92  E-value=7.9e-05  Score=66.18  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM  459 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  459 (680)
                      ..|..+...|.+.|++++|++.|++..+  +.| +...+..+..++...|++++|...|++..+.. +.+...|..+..+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3444445555555555555555555554  223 23344444555555555555555555555432 2234445555555


Q ss_pred             HHhcCCHHHHHHHHHhC
Q 037256          460 LGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~m  476 (680)
                      |.+.|++++|.+.+++.
T Consensus        89 ~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHH
Confidence            55555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.92  E-value=9.5e-05  Score=63.09  Aligned_cols=97  Identities=6%  Similarity=-0.027  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256          415 HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI  494 (680)
Q Consensus       415 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~  494 (680)
                      ...+..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...+++                   
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------   68 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRR-------------------   68 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------
Confidence            4455556666666666666666666665543 33455666667777777777776665543                   


Q ss_pred             HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          495 HGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       495 ~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                              +++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus        69 --------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           69 --------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             --------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                    3445677777777888888888888888888877765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.92  E-value=4.8e-05  Score=63.78  Aligned_cols=93  Identities=5%  Similarity=-0.098  Sum_probs=59.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHH
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI  498 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~  498 (680)
                      ..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++                       
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~-----------------------   76 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH-----------------------   76 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence            334445556666666666666666542 23455566666666666666666555543                       


Q ss_pred             HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                          +++++|+++..+..++.+|...|++++|...+++..+
T Consensus        77 ----al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           77 ----ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             ----HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                3556777777777777777777777777777777665

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.90  E-value=8.5e-05  Score=78.47  Aligned_cols=129  Identities=9%  Similarity=0.023  Sum_probs=97.1

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----------------HITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ...|..+...|.+.|++++|+..|++..+  +.|+                ...|..+..++.+.|++++|+..+++..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            44566777777778888888888887776  3343                35777888888899999999999999887


Q ss_pred             cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256          444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA  523 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~  523 (680)
                      .. +.+...|..+..+|.+.|++++|+..|++                           +++++|++..++..++.++.+
T Consensus       346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~---------------------------al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEK---------------------------VLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHTTC----CHHHHHHHHHHH
T ss_pred             cC-CccHHHHHHHHHHHHHccCHHHHHHHHHH---------------------------HHHhCCCCHHHHHHHHHHHHH
Confidence            64 44677888888999999999998877765                           456788899999999999999


Q ss_pred             cCChhHHHH-HHHHHH
Q 037256          524 SNKWREVGK-LREDMK  538 (680)
Q Consensus       524 ~g~~~~A~~-~~~~m~  538 (680)
                      .|+++++.+ .++.|-
T Consensus       398 ~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          398 AKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            999988774 445554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=0.0003  Score=60.61  Aligned_cols=111  Identities=14%  Similarity=0.014  Sum_probs=84.5

Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHH
Q 037256          345 IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFT  419 (680)
Q Consensus       345 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~  419 (680)
                      .+...+..+...+.+.|++++|.+.|++.....|+    ...|..+...|...|++++|+..+++..+.  .| +...+.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence            35667777888888889999999999888666676    577888888888999999999999988874  45 455777


Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD  458 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  458 (680)
                      .+..++...|++++|...|++..+.. +.+...+..+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence            78888889999999999999888753 223444443333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.88  E-value=0.00023  Score=63.15  Aligned_cols=97  Identities=11%  Similarity=0.061  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS  423 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~  423 (680)
                      +...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|+..|++..+  +.|+ ...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            456677788888888888888888888754444 577788888888888888888888888888  4454 457777888


Q ss_pred             HHHccCCHHHHHHHHHHhhhc
Q 037256          424 ACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ++...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888888775

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.88  E-value=0.00025  Score=58.22  Aligned_cols=96  Identities=16%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSA  424 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a  424 (680)
                      ...+..+...+...|++++|...|++.....| +...|..+...|...|++++|...+++..+.  .| +...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            34556667777788888888888887644333 5677777888888888888888888888874  34 35567777778


Q ss_pred             HHccCCHHHHHHHHHHhhhc
Q 037256          425 CSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       425 ~~~~g~~~~a~~~~~~m~~~  444 (680)
                      +...|++++|.+.++...+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            88888888888888887765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.85  E-value=2.3e-05  Score=72.24  Aligned_cols=171  Identities=11%  Similarity=0.033  Sum_probs=93.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256          252 IVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       252 Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (680)
                      .+......|+++++.+.++.-..   .....|..+...+.+.|++++|+..|++..+..  |+...+...        ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~   79 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL   79 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence            33444455666666666654332   134567778888899999999999999988642  211100000        00


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256          329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQML  407 (680)
Q Consensus       329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  407 (680)
                      ..-.   .       .....++..+..+|.+.|++++|...|++.....| +...|..+..+|...|++++|++.|++..
T Consensus        80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            0000   0       00134566677777888888888888877644333 56677778888888888888888888887


Q ss_pred             HcCCCCCH-HHHHHHHHHHHccCCHHHHH-HHHHHhhhc
Q 037256          408 EEGVKPDH-ITFTSILSACSHAGLIDEGR-KCFADMTKL  444 (680)
Q Consensus       408 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~-~~~~~m~~~  444 (680)
                      +  +.|+. ..+..+..++...++.+++. ..+..|...
T Consensus       150 ~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          150 S--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             H--HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             H--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7  44543 45666666666666666665 455555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.00016  Score=60.86  Aligned_cols=89  Identities=9%  Similarity=0.037  Sum_probs=38.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGL  430 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~  430 (680)
                      +...+.+.|++++|...|++.....| +...|..+..+|.+.|++++|+..|++..+  +.|+ ...+..+..++...|+
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A           10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhC
Confidence            33444444444444444444322222 234444444444444444444444444444  2232 2244444444444444


Q ss_pred             HHHHHHHHHHhhh
Q 037256          431 IDEGRKCFADMTK  443 (680)
Q Consensus       431 ~~~a~~~~~~m~~  443 (680)
                      +++|...|++..+
T Consensus        88 ~~~A~~~~~~al~  100 (126)
T 3upv_A           88 YASALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.0006  Score=71.17  Aligned_cols=121  Identities=11%  Similarity=-0.020  Sum_probs=80.5

Q ss_pred             HHHHcCCHHHHHHHHhhcCC------CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCCH-HHHHHHHH
Q 037256          356 MYAKCGDLDTAENMFNDIHP------SER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE--GV--KPDH-ITFTSILS  423 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~~-~t~~~ll~  423 (680)
                      .+...|+.+.|.++++....      ..+ -..++..+...|...|++++|..++++....  +.  +|.. .++..+..
T Consensus       104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  183 (434)
T 4b4t_Q          104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK  183 (434)
T ss_dssp             HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            33345566666665554411      111 1346777888888888888888888887653  11  2222 36777788


Q ss_pred             HHHccCCHHHHHHHHHHhhhc--CCC-c-C--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          424 ACSHAGLIDEGRKCFADMTKL--SVK-P-E--VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...+.+.
T Consensus       184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            899999999999998887654  221 1 1  345677778888899999987776554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.84  E-value=6.1e-05  Score=66.09  Aligned_cols=129  Identities=9%  Similarity=0.003  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-H
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSE---RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG----VKPD-H  415 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~  415 (680)
                      .++..+...|...|++++|.+.|++.....   ++    ..++..+...|...|++++|.+.+++..+..    -.+. .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            345566666777777777777776652221   11    2366777777888888888888888776521    1111 2


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          416 ITFTSILSACSHAGLIDEGRKCFADMTKL----SVK-PEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       416 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..+..+...+...|++++|.+.+++..+.    +.. .....+..+...|...|++++|.+.+++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            35666677788888888888888877654    211 12345677788888889988888888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.81  E-value=0.00033  Score=58.68  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--CCcC----hHHHHH
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS--VKPE----VKHYAC  455 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~  455 (680)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..  ..++    ...+..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444445555555555555555555431 1123344444445555555555555555554431  0111    344555


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 037256          456 MVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       456 li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +...|.+.|++++|.+.+++.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            555555555555555555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.0078  Score=62.55  Aligned_cols=284  Identities=10%  Similarity=0.005  Sum_probs=146.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCC-HhhH
Q 037256          250 NSIVAMYARCGNVEKARLVFDMMEK-----RDL----ISWNSMLTGYIQNGQASEALLLFDEMQN----SDCKPN-PVTA  315 (680)
Q Consensus       250 ~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~  315 (680)
                      ..|...|.+.|++++|.+.+..+.+     ++.    ...+.+-..+...|++++|..++++...    .+..+. ..++
T Consensus        59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  138 (434)
T 4b4t_Q           59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS  138 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            4466666667777776666665532     111    1222333334445667777777666542    222333 3345


Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHc--CC---CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC-----HhH
Q 037256          316 LILVSACTYLGSRQLGRKFHGYIINS--NM---KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN-----VSS  382 (680)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~i~~~~~~~--~~---~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~-----~~~  382 (680)
                      ..+...+...|+++.|..++..+...  +.   +....++..++.+|...|++++|...+++....   .++     ...
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  218 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL  218 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence            56666777777777777777666542  11   122456777788888888888888887765221   111     235


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDHITF----TSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKH  452 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~  452 (680)
                      +..+...+...|++++|...|.+..+.    +........    ...+-+....+..+.....+......  ...|....
T Consensus       219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (434)
T 4b4t_Q          219 DLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDA  298 (434)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhH
Confidence            666677777888899888888777542    222111111    11111222223333333333322111  23455566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhHH---HHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256          453 YACMVDMLGRAGCLYEAFDMIKQMP--LPPNDSVW---GALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW  527 (680)
Q Consensus       453 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~  527 (680)
                      +..++..+. .+.+....+.+....  ...|....   ..+.....   +.....+  ..|-.......++..+.-  ..
T Consensus       299 ~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~l~~~--~~~y~~i~l~~la~~l~~--~~  370 (434)
T 4b4t_Q          299 MKAVAEAYN-NRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLL---ESNLCKI--IEPFECVEISHISKIIGL--DT  370 (434)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHH---HHHHHHH--HSSCSCEEHHHHHHHHTC--CH
T ss_pred             HHHHHHHHH-hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---HHHHHHH--HHHHHhcCHHHHHHHhCc--CH
Confidence            777777664 445555555554431  12233221   11111111   1112222  345444455555554432  45


Q ss_pred             hHHHHHHHHHHhCC
Q 037256          528 REVGKLREDMKNKG  541 (680)
Q Consensus       528 ~~A~~~~~~m~~~g  541 (680)
                      +++++.+..|...|
T Consensus       371 ~~~E~~l~~lI~~~  384 (434)
T 4b4t_Q          371 QQVEGKLSQMILDK  384 (434)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC
Confidence            67777777776544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.80  E-value=0.00012  Score=59.54  Aligned_cols=95  Identities=12%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc--ChHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKP--EVKHYACMV  457 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li  457 (680)
                      ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            3445555666666666666666666666532 1233455556666666666666666666666542 22  455666666


Q ss_pred             HHHHhc-CCHHHHHHHHHhC
Q 037256          458 DMLGRA-GCLYEAFDMIKQM  476 (680)
Q Consensus       458 ~~~~~~-g~~~~A~~~~~~m  476 (680)
                      ..+.+. |++++|.+.+++.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            666666 6666666666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.76  E-value=0.00029  Score=60.00  Aligned_cols=95  Identities=9%  Similarity=-0.089  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSA  424 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a  424 (680)
                      ...+..+...|.+.|++++|...|++.....| +...|..+...|...|++++|+..+++..+.  .|+ ...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence            34444444445555555555555544422222 2444455555555555555555555555442  222 2344444444


Q ss_pred             HHccCCHHHHHHHHHHhhh
Q 037256          425 CSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       425 ~~~~g~~~~a~~~~~~m~~  443 (680)
                      +...|++++|...|++..+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=7.3e-05  Score=75.46  Aligned_cols=95  Identities=8%  Similarity=0.009  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .|..+..++.+.|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++.                    
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a--------------------  290 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA--------------------  290 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence            56777778888888888888888887753 345677888888888888888888888765                    


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIY-AASNKWREVGKLREDMKN  539 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~  539 (680)
                             ++++|+++..+..|..+. ...+..+++.+.+++|..
T Consensus       291 -------l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          291 -------QKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             -------TC-----------------------------------
T ss_pred             -------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                   234455555555555552 334455566666666544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.75  E-value=0.00014  Score=60.85  Aligned_cols=91  Identities=8%  Similarity=-0.076  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG  461 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  461 (680)
                      +..+...+.+.|++++|+..|++..+  ..|+ ...+..+..++...|++++|...|++..+.. +.+...+..+...|.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            33344445555555555555555555  2342 2344445555555555555555555555442 223445555555555


Q ss_pred             hcCCHHHHHHHHHhC
Q 037256          462 RAGCLYEAFDMIKQM  476 (680)
Q Consensus       462 ~~g~~~~A~~~~~~m  476 (680)
                      +.|++++|++.+++.
T Consensus        97 ~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           97 NEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            555555555555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.75  E-value=0.0054  Score=60.70  Aligned_cols=165  Identities=12%  Similarity=0.048  Sum_probs=77.0

Q ss_pred             ChhHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-hHHHHHHHHHHHHcCCCCchHHHHH
Q 037256          276 DLISWNSMLTGYIQNGQ--ASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS-RQLGRKFHGYIINSNMKIDATLRNA  352 (680)
Q Consensus       276 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~  352 (680)
                      +..+|+.-...+.+.++  ++++++++.++.+.. +-|...|+.-.-.....|. .+.+.+.+..+++.. +.|...|+-
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~  184 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY  184 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence            44445544444444442  455555555555432 2233344333333334444 244444544444443 334444444


Q ss_pred             HHHHHHHc--------------CCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc-----------CChHHHHHHHHHH
Q 037256          353 VMDMYAKC--------------GDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH-----------GHGRKALEFFSQM  406 (680)
Q Consensus       353 li~~y~k~--------------g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m  406 (680)
                      ....+.+.              +.++++.+.+.+.....| |..+|+-+-..+.+.           +..+++++.++++
T Consensus       185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el  264 (331)
T 3dss_A          185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL  264 (331)
T ss_dssp             HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence            44333333              235556666655533333 455565444443333           3456777777777


Q ss_pred             HHcCCCCCHH-HHHHH---HHHHHccCCHHHHHHHHHHhhhc
Q 037256          407 LEEGVKPDHI-TFTSI---LSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       407 ~~~g~~p~~~-t~~~l---l~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .+  ..||.. .+.++   +.+....|..++....+.++++.
T Consensus       265 le--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          265 QE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             Hh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            77  556652 11111   11112345555666666666553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.74  E-value=0.00017  Score=63.07  Aligned_cols=138  Identities=13%  Similarity=0.065  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc-Ch
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PDH----ITFTSILSACSHAGLIDEGRKCFADMTKL----SVKP-EV  450 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p-~~  450 (680)
                      .++..+...|...|++++|+..+++..+.... ++.    .++..+...+...|++++|...+++..+.    +..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            46778888899999999999999998763111 121    36777888899999999999999987764    1111 14


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH
Q 037256          451 KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV  530 (680)
Q Consensus       451 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A  530 (680)
                      ..+..+...+...|++++|.+.+++.-            ..+.        . ....+.....+..++.+|...|++++|
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~------------~~~~--------~-~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQ--------E-LKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHH--------H-TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHH--------H-ccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            567788889999999999999987641            0000        0 000011134677899999999999999


Q ss_pred             HHHHHHHHh
Q 037256          531 GKLREDMKN  539 (680)
Q Consensus       531 ~~~~~~m~~  539 (680)
                      .+.+++..+
T Consensus       149 ~~~~~~a~~  157 (164)
T 3ro3_A          149 MHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.72  E-value=0.00013  Score=61.34  Aligned_cols=27  Identities=4%  Similarity=0.060  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ++..+..++...|++++|.+.|+...+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.67  E-value=0.00025  Score=75.20  Aligned_cols=117  Identities=6%  Similarity=-0.069  Sum_probs=93.0

Q ss_pred             cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256           51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG  129 (680)
Q Consensus        51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  129 (680)
                      .+.+.|++++|.+.|++..+..| +..+|+.+..+|.+.|++++|++.|++..+... -+..++..+..++...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence            34455999999999999888777 577899999999999999999999999998743 2567788888899999999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHH--HHhcCChHHHHHHHh
Q 037256          130 KVVHGDIIRTGFLSDSYVQAALVDM--YAKCGQTDDGCKVFD  169 (680)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~Li~~--~~~~g~~~~A~~~f~  169 (680)
                      .+.+++.++.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999875 3345556656555  788899999999988

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.65  E-value=0.00028  Score=72.00  Aligned_cols=122  Identities=8%  Similarity=0.011  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc--------------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEE--------------GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVK  447 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~  447 (680)
                      |..+...+.+.|++++|++.|++..+.              ...|. ...|..+..++.+.|++++|++.+++..+.. +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence            444455555556666666555555541              02232 2466677777778888888888888877653 3


Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256          448 PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW  527 (680)
Q Consensus       448 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~  527 (680)
                      .+...|..+..+|.+.|++++|++.+++                           +++++|++...+..+..++...++.
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~---------------------------Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKK---------------------------AQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHH---------------------------HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            3566777777888888888887776654                           3455677777777777777777766


Q ss_pred             hHHHH
Q 037256          528 REVGK  532 (680)
Q Consensus       528 ~~A~~  532 (680)
                      +++.+
T Consensus       358 ~~a~k  362 (370)
T 1ihg_A          358 KDKEK  362 (370)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.64  E-value=0.00042  Score=60.15  Aligned_cols=69  Identities=10%  Similarity=-0.057  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchH----HHHHHHHHhcCC
Q 037256          451 KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYF----VLMSNIYAASNK  526 (680)
Q Consensus       451 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~----~~l~~~~~~~g~  526 (680)
                      ..|..+..++.+.|++++|+..+++.                    .+.+.+..+++|+++..|    ..++.++...|+
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kA--------------------L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr  117 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKA--------------------LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR  117 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH--------------------HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC
Confidence            37888889999999999998888753                    223555667799999999    999999999999


Q ss_pred             hhHHHHHHHHHHh
Q 037256          527 WREVGKLREDMKN  539 (680)
Q Consensus       527 ~~~A~~~~~~m~~  539 (680)
                      +++|++.+++..+
T Consensus       118 ~eEAl~~y~kAle  130 (159)
T 2hr2_A          118 GAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.63  E-value=0.00042  Score=61.21  Aligned_cols=94  Identities=12%  Similarity=0.057  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc--------C--------CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          382 SWNVLIAGYGMHGHGRKALEFFSQMLEE--------G--------VKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g--------~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .|......+.+.|++++|+..|.+.+..        .        ..|.. ..|..+..++.+.|++++|...++..++.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            4455555566666666666666665552        0        02332 35666777777888888888888887775


Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      . +.+...|..+..+|...|++++|.+.+++.
T Consensus        93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            3 445667777788888888888887777664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.62  E-value=0.00068  Score=56.89  Aligned_cols=89  Identities=15%  Similarity=0.052  Sum_probs=48.2

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSAC  425 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~  425 (680)
                      ...+.+.|++++|...|+++....|+.    ..+..+...|...|++++|+..|++..+.  .|+    ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHH
Confidence            344555566666666666553323322    24555555566666666666666666553  233    23444555555


Q ss_pred             HccCCHHHHHHHHHHhhhc
Q 037256          426 SHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~  444 (680)
                      ...|++++|...|+.+.+.
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            6666666666666665553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.62  E-value=0.00021  Score=75.49  Aligned_cols=127  Identities=13%  Similarity=0.030  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 037256          347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG  410 (680)
Q Consensus       347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  410 (680)
                      ...+..+...|.+.|++++|...|++.....|+                ...|..+..+|.+.|++++|+..+++.++  
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence            445666777888888888888888877443332                57888999999999999999999999998  


Q ss_pred             CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 037256          411 VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF-DMIKQM  476 (680)
Q Consensus       411 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m  476 (680)
                      +.|+ ...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|+.++|. ..+.+|
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4554 5588888899999999999999999998763 334567888888888888888876 345555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.61  E-value=7e-05  Score=62.20  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHhhcCCC---CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 037256          360 CGDLDTAENMFNDIHPS---ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEG  434 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a  434 (680)
                      .|++++|...|++....   .| +...|..+...|...|++++|+..|++..+.  .|+ ...+..+..++...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            45666666666666443   12 2456666777777777777777777777763  343 34666666677777777777


Q ss_pred             HHHHHHhhhc
Q 037256          435 RKCFADMTKL  444 (680)
Q Consensus       435 ~~~~~~m~~~  444 (680)
                      ...+++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777776665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.57  E-value=0.00067  Score=56.91  Aligned_cols=91  Identities=13%  Similarity=-0.008  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC---hHHHHH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE---VKHYAC  455 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~  455 (680)
                      +..+...+...|++++|...|++..+.  .|+.    ..+..+..++...|++++|...|+...+.. +.+   ...+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~   81 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence            445667788999999999999999984  3443    367778888999999999999999998863 222   566788


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 037256          456 MVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       456 li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +..+|.+.|++++|.+.+++.
T Consensus        82 la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            889999999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.56  E-value=0.0028  Score=68.44  Aligned_cols=164  Identities=10%  Similarity=0.031  Sum_probs=114.8

Q ss_pred             HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC-
Q 037256          363 LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGH----------GRKALEFFSQMLEEGVKPD-HITFTSILSACSHAG-  429 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g-  429 (680)
                      -++|.+.++.+....| +..+|+.--..+...|+          ++++++.++++.+.  .|. ..+|..-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence            3566777777644444 35567666666655565          78888888888873  454 346766666777777 


Q ss_pred             -CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHH-----------
Q 037256          430 -LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG-CLYEAFDMIKQM-PLPP-NDSVWGALLLACRI-----------  494 (680)
Q Consensus       430 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~-----------  494 (680)
                       +++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+-....+..           
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence             6688888888888764 445666776666677777 778888887776 4444 55667665554433           


Q ss_pred             --------HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256          495 --------HGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       495 --------~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~  529 (680)
                              .+.+.+.++++++|+|.+++.-+.+++.+.++.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                    14556778899999999999999999999988555

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.54  E-value=0.00095  Score=57.93  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC
Q 037256          350 RNAVMDMYAKCGDLDTAENMFNDIHPSERN-------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----GV  411 (680)
Q Consensus       350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~  411 (680)
                      +......+.+.|++++|...|++.....|+             ...|+.+..++.+.|++++|+..+++.++.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344555666777777777777766333333             227888888888888888888888888872     12


Q ss_pred             CCCHH-HH----HHHHHHHHccCCHHHHHHHHHHhhhc-----CCCcChHHH
Q 037256          412 KPDHI-TF----TSILSACSHAGLIDEGRKCFADMTKL-----SVKPEVKHY  453 (680)
Q Consensus       412 ~p~~~-t~----~~ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~  453 (680)
                      .|+.. .|    .....++...|++++|+..|++..+.     |+.+.....
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            77764 66    77777888888888888888887653     444444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.40  E-value=0.00019  Score=72.39  Aligned_cols=143  Identities=10%  Similarity=-0.020  Sum_probs=74.8

Q ss_pred             hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc
Q 037256          314 TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH  393 (680)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~  393 (680)
                      .+..+...+...|+++.|...+..+++..  |+..       .+...|+.+++...+.        ...|+.+..+|.+.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~--------~~~~~nla~~~~~~  243 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK--------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH--------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH--------HHHHHHHHHHHHHc
Confidence            34444555556666666666666655432  2111       1112222333322221        12788889999999


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH-HhcCCHHHHHH
Q 037256          394 GHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML-GRAGCLYEAFD  471 (680)
Q Consensus       394 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~  471 (680)
                      |++++|+..+++.++  +.| +...+..+..++...|++++|...|++..+.. +-+...+..+.... ...+..+++.+
T Consensus       244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998  456 45688888999999999999999999987652 22334444444442 23455566666


Q ss_pred             HHHhC
Q 037256          472 MIKQM  476 (680)
Q Consensus       472 ~~~~m  476 (680)
                      +|.+|
T Consensus       321 ~~~~~  325 (338)
T 2if4_A          321 MYKGI  325 (338)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            77666

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.38  E-value=0.0007  Score=69.05  Aligned_cols=118  Identities=8%  Similarity=0.018  Sum_probs=78.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCC----------------C-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHP----------------S-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP  413 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~----------------~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  413 (680)
                      ..+...|.+.|++++|.+.|++...                . ..+...|+.+..+|.+.|++++|++.+++.++  +.|
T Consensus       227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p  304 (370)
T 1ihg_A          227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDP  304 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCc
Confidence            3344455555555555555554422                1 12345677788888888888888888888887  455


Q ss_pred             C-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256          414 D-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       414 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      + ...+..+..++...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4577777778888888888888888877753 2355666667777777777666643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.38  E-value=0.00018  Score=59.63  Aligned_cols=85  Identities=8%  Similarity=-0.029  Sum_probs=65.8

Q ss_pred             CCChHHHHHHhhhccCC---CC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHH
Q 037256           55 YGEPNTARSLFNSIHND---KS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGK  130 (680)
Q Consensus        55 ~g~~~~A~~~f~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  130 (680)
                      .|++++|+..|++....   .| +...|..+...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            38888999999888877   35 4667888888999999999999999998876433 5667777788888889999999


Q ss_pred             HHHHHHHHhC
Q 037256          131 VVHGDIIRTG  140 (680)
Q Consensus       131 ~~~~~~~~~g  140 (680)
                      ..+...++..
T Consensus        82 ~~~~~al~~~   91 (117)
T 3k9i_A           82 ELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9888888764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.36  E-value=0.00064  Score=71.70  Aligned_cols=132  Identities=11%  Similarity=-0.011  Sum_probs=94.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC---CCC---CH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-----C-CCcC-hHHHH
Q 037256          389 GYGMHGHGRKALEFFSQMLEEG---VKP---DH-ITFTSILSACSHAGLIDEGRKCFADMTKL-----S-VKPE-VKHYA  454 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~~g---~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~  454 (680)
                      .+...|++++|+.++++.++..   +.|   +. .+++.|..+|...|++++|..++++..+.     | -.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3557788888888888776531   223   33 37888888999999999999988887642     2 1222 45688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChhHHH
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHT---GYFVLMSNIYAASNKWREVG  531 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~  531 (680)
                      .|...|...|++++|+.++++.-                    ...++  .+.|+.|   .....|..++...|++++|+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al--------------------~i~~~--~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAY--------------------AILLV--THGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH--------------------HHHHH--HTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH--------------------HHHHH--HhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999998750                    11111  1344443   33457788889999999999


Q ss_pred             HHHHHHHhCCC
Q 037256          532 KLREDMKNKGL  542 (680)
Q Consensus       532 ~~~~~m~~~g~  542 (680)
                      .++..+++.-.
T Consensus       456 ~~~~~~~~~~~  466 (490)
T 3n71_A          456 FMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.27  E-value=0.0016  Score=57.38  Aligned_cols=114  Identities=15%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256          277 LISWNSMLTGYIQNGQASEALLLFDEMQNSD------CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLR  350 (680)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~  350 (680)
                      ...+......+.+.|++++|+..|.+....-      -.|+...+                    ..+    -+.+..++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~   66 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY   66 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence            4456677777888888888888887766420      00100000                    000    02234455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      ..+..+|.+.|++++|...+++.....| +...|..+..+|...|++++|+..|++..+  +.|+..
T Consensus        67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~  131 (162)
T 3rkv_A           67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence            6666666677777777776666543333 355666666667777777777777776666  455543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.00058  Score=55.45  Aligned_cols=94  Identities=11%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC-------h
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-------V  450 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~-------~  450 (680)
                      +...|..+...+...|++++|++.|++..+.  .| +...+..+..++...|++++|.+.+++..+.  .|+       .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence            3456677777777888888888888887773  44 4456777777788888888888888887764  233       4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          451 KHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       451 ~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..+..+..++...|+.++|.+.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            44555666666666666666555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.01  E-value=0.0017  Score=53.24  Aligned_cols=77  Identities=13%  Similarity=0.106  Sum_probs=46.5

Q ss_pred             HHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          366 AENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       366 A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      |.+.|++.....| +...|..+...|...|++++|+..|++..+.  .|+ ...+..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444554433333 4556666666677777777777777776663  343 34566666666677777777777766655


Q ss_pred             c
Q 037256          444 L  444 (680)
Q Consensus       444 ~  444 (680)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.00  E-value=0.0011  Score=57.38  Aligned_cols=96  Identities=8%  Similarity=0.031  Sum_probs=64.8

Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHcc
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQL  506 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l  506 (680)
                      +.+.+++|.+.++...+.. +.+...|..+..++...|+++.+.+.++                 ....|...+++++++
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-----------------~~~eAi~~le~AL~l   75 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-----------------MIQEAITKFEEALLI   75 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-----------------HHHHHHHHHHHHHHh
Confidence            3445566666666666543 3455556556556655555442222111                 012256677888999


Q ss_pred             CCCCCchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhC
Q 037256          507 EPEHTGYFVLMSNIYAASN-----------KWREVGKLREDMKNK  540 (680)
Q Consensus       507 ~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~  540 (680)
                      +|++..+|..++++|...|           ++++|++.|++..+.
T Consensus        76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            9999999999999999875           899999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.98  E-value=0.0029  Score=66.69  Aligned_cols=120  Identities=10%  Similarity=0.012  Sum_probs=86.0

Q ss_pred             HHHcCCHHHHHHHHhhcCC-----CC---CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 037256          357 YAKCGDLDTAENMFNDIHP-----SE---RN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----G-VKPDH-ITFTS  420 (680)
Q Consensus       357 y~k~g~~~~A~~~f~~~~~-----~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~  420 (680)
                      +...|++++|+.++++...     ..   |+ ..+++.|...|...|++++|..++++.++-     | -.|+. .+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4567888888877766521     12   22 457889999999999999999999887642     2 22443 37888


Q ss_pred             HHHHHHccCCHHHHHHHHHHhhhc-----CC-Cc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          421 ILSACSHAGLIDEGRKCFADMTKL-----SV-KP-EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       421 ll~a~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      |...|...|++++|..++++..+.     |- .| .....+.+..++...|++++|+.++.++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998887652     21 12 2344556667777888889998888776

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00064  Score=55.19  Aligned_cols=95  Identities=14%  Similarity=0.000  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-------hhH
Q 037256           75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD-------SYV  147 (680)
Q Consensus        75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~  147 (680)
                      ...|..+...+.+.|++++|++.|++..+..+ .+...+..+..++...|++++|...++..++..  |+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence            44566666777777777777777777766432 245556666666677777777777777766543  22       334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCC
Q 037256          148 QAALVDMYAKCGQTDDGCKVFDEMS  172 (680)
Q Consensus       148 ~~~Li~~~~~~g~~~~A~~~f~~~~  172 (680)
                      +..+...+...|+.+.|...|++++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            4555556666666666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.98  E-value=0.0013  Score=56.88  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC----------HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc--
Q 037256          327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD----------LDTAENMFNDIHPSER-NVSSWNVLIAGYGMH--  393 (680)
Q Consensus       327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~----------~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~--  393 (680)
                      .+++|.+.++..++.. +.+...++.+..++.+.++          +++|...|++.....| +..+|..+..+|...  
T Consensus        17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            3444444444444333 2334444444444444433          4577777776644444 355677777777665  


Q ss_pred             ---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256          394 ---------GHGRKALEFFSQMLEEGVKPDHITFTSILSAC  425 (680)
Q Consensus       394 ---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  425 (680)
                               |++++|++.|++.++  +.|+...|...+..+
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             cCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence                     378888888888888  678776665555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.92  E-value=0.033  Score=63.18  Aligned_cols=102  Identities=13%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF  334 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i  334 (680)
                      ....+|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+....+
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3455677777777765553  456777777777777777777777776643         22333344445555554444


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      -+.....|.      ++.-..+|.++|++++|.+++.++
T Consensus       730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            444444331      233344566677777777776655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.89  E-value=0.0029  Score=50.49  Aligned_cols=65  Identities=8%  Similarity=0.126  Sum_probs=55.2

Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256          448 PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW  527 (680)
Q Consensus       448 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~  527 (680)
                      -+...+..+...|.+.|++++|++.|++                           +++++|+++.+|..++.+|...|++
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------------al~~~p~~~~a~~~lg~~~~~~g~~   57 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEE---------------------------LVETDPDYVGTYYHLGKLYERLDRT   57 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHhCCCcHHHHHHHHHHHHHcCCH
Confidence            3456777788888888888888777764                           4577899999999999999999999


Q ss_pred             hHHHHHHHHHHh
Q 037256          528 REVGKLREDMKN  539 (680)
Q Consensus       528 ~~A~~~~~~m~~  539 (680)
                      ++|.+.+++..+
T Consensus        58 ~~A~~~~~~al~   69 (100)
T 3ma5_A           58 DDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.82  E-value=0.013  Score=50.00  Aligned_cols=89  Identities=11%  Similarity=-0.020  Sum_probs=43.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH-  427 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-  427 (680)
                      |..+|...+.+++|.+.|++... ..+..++..|...|..    .++.++|++.|++..+.|   +......|-..|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence            33444444444445555544411 2344444445555544    455555555555555543   33344444444444 


Q ss_pred             ---cCCHHHHHHHHHHhhhcC
Q 037256          428 ---AGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       428 ---~g~~~~a~~~~~~m~~~~  445 (680)
                         .+++++|.++|++..+.|
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               455566666665555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.82  E-value=0.026  Score=48.04  Aligned_cols=112  Identities=12%  Similarity=0.037  Sum_probs=89.4

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHH
Q 037256          291 GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTA  366 (680)
Q Consensus       291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A  366 (680)
                      +++++|++.|++..+.| .|+..    +-..+...+..+.|.+.+....+.|   +...+..|..+|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            46788888898888877 44444    5556666677788888888888875   56778888888888    7899999


Q ss_pred             HHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 037256          367 ENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGV  411 (680)
Q Consensus       367 ~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~  411 (680)
                      .+.|++..+ ..++.++..|...|..    .++.++|.+.|++..+.|.
T Consensus        81 ~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACG-LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999998832 3577888888888888    8899999999999988763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.81  E-value=0.0037  Score=49.84  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      +...|..+...|...|++++|+..|++..+.  .|+ ...|..+..++...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3455666666666666666666666666653  343 23555556666666666666666666554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.70  E-value=0.017  Score=44.34  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..|..+...+...|++++|+..|++..+.  .| +...+..+..++...|++++|...+++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34444555555555555555555555542  23 2334445555555555555555555555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.70  E-value=0.0028  Score=51.94  Aligned_cols=79  Identities=9%  Similarity=0.040  Sum_probs=60.6

Q ss_pred             HHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256           60 TARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIR  138 (680)
Q Consensus        60 ~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  138 (680)
                      +|...|+......| +...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++..++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56677777776666 566788888888888999999988888877542 2455677777788888888888888888776


Q ss_pred             h
Q 037256          139 T  139 (680)
Q Consensus       139 ~  139 (680)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.70  E-value=0.027  Score=60.67  Aligned_cols=131  Identities=11%  Similarity=0.039  Sum_probs=91.6

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCC----------chHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGH----------CVETLELYSTMRRSGISSNSYTFPFVLKACASNS  124 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  124 (680)
                      ..-++|.+.++.+....| +..+|+.--..+...|+          ++++++.++++.+..++ +..+|..---++.+.+
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            345677888888887777 45578776666666555          78888888888776443 5556776666677777


Q ss_pred             --ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCCC---ChhHHHHHHHHHHh
Q 037256          125 --LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG-QTDDGCKVFDEMSVR---DLVSWTVMITAYEQ  188 (680)
Q Consensus       125 --~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~  188 (680)
                        +++++.+.++.+++.. +.+...|+.-...+.+.| ..+++.+.++++.+.   |..+|+.....+.+
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence              5688888888888876 456777777777777777 777788887777653   55567666555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.62  E-value=0.0085  Score=62.12  Aligned_cols=126  Identities=11%  Similarity=0.028  Sum_probs=87.8

Q ss_pred             HHHHHccCCHHHHHHHHHHhhhc---CCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256          422 LSACSHAGLIDEGRKCFADMTKL---SVKP----EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI  494 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~  494 (680)
                      +..+.+.|++++|..++++..+.   -+.|    ...+++.|..+|...|++++|+.++++.-                 
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-----------------  356 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-----------------  356 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence            44456678888888888887653   1222    24578888999999999999999988650                 


Q ss_pred             HHHHHHHHHH-ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcccHHH
Q 037256          495 HGEIAANYLF-QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEV  573 (680)
Q Consensus       495 ~~~~~~~~~~-~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i  573 (680)
                         ...++.+ .-.|+-...+..|+.+|..+|++++|+.++++..+--.                  ..=+..||...++
T Consensus       357 ---~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          357 ---EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDL  415 (429)
T ss_dssp             ---HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHH
T ss_pred             ---HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHH
Confidence               0111111 11233345688899999999999999999999865210                  0113579999999


Q ss_pred             HHHHHHHHHHHH
Q 037256          574 YKKVESMAVEIK  585 (680)
Q Consensus       574 ~~~~~~l~~~m~  585 (680)
                      +..+.+...+|+
T Consensus       416 ~~~l~~~~~e~~  427 (429)
T 3qwp_A          416 ILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            888888877775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.53  E-value=0.052  Score=61.54  Aligned_cols=100  Identities=17%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 037256          358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKC  437 (680)
Q Consensus       358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  437 (680)
                      ..+|++++|.++.+.+    .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++
T Consensus       663 l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3455566665555443    2345566666666666666666666655432         22333333334444444444


Q ss_pred             HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      -+.....|      .++.-..+|.+.|++++|++++.++
T Consensus       730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            33333322      1122233344455555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.48  E-value=0.012  Score=46.12  Aligned_cols=47  Identities=17%  Similarity=0.090  Sum_probs=42.1

Q ss_pred             HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      +...++++++++|+++.....++.++...|++++|+..|+++.+...
T Consensus        28 A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A           28 VSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45566778899999999999999999999999999999999998654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.44  E-value=0.03  Score=42.94  Aligned_cols=56  Identities=14%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQ  304 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (680)
                      +..+...|.+.|++++|...|++..+   .+...|..+...+.+.|++++|...|++..
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333444444444444444443321   123333333444444444444444444333

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.43  E-value=0.0016  Score=66.05  Aligned_cols=396  Identities=8%  Similarity=0.058  Sum_probs=231.5

Q ss_pred             hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH
Q 037256           34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF  113 (680)
Q Consensus        34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  113 (680)
                      .+.+|+.|-.++.+ .      |++.+|++.|-+.  .  |...|..+|.+..+.|.+++-++.+...++..-  ++..=
T Consensus        53 ~p~VWs~LgkAqL~-~------~~v~eAIdsyIkA--~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~ID  119 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQ-K------GMVKEAIDSYIKA--D--DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVE  119 (624)
T ss_dssp             CCCCSSSHHHHTTT-S------SSCTTTTTSSCCC--S--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTT
T ss_pred             CccHHHHHHHHHHc-c------CchHHHHHHHHhC--C--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccH
Confidence            67788888888887 6      8888888766443  3  556688899999999999999888876655432  44445


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---------------------
Q 037256          114 PFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---------------------  172 (680)
Q Consensus       114 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---------------------  172 (680)
                      +.|+-+|++.+++.+-++++.       .|+..-...+.+-+...|.++.|.-+|..+.                     
T Consensus       120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda  192 (624)
T 3lvg_A          120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG  192 (624)
T ss_dssp             HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred             HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            678889999888766544432       4555555666777777888888887777664                     


Q ss_pred             ---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC-CCChhH
Q 037256          173 ---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF-LEDLCI  248 (680)
Q Consensus       173 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~  248 (680)
                         ..++.+|-.+-.+|...+++.-|--.--.+.-   .||  .+..++..|-..|.+++-..+++..+  |+ ......
T Consensus       193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGm  265 (624)
T 3lvg_A          193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGM  265 (624)
T ss_dssp             TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHH
T ss_pred             HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHH
Confidence               23677888888888888887766444333321   111  12234455666677776666665544  22 235567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcC----CC-------ChhHHHHHHHHHHHcCChhHHHHHH-------------HHHH
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMME----KR-------DLISWNSMLTGYIQNGQASEALLLF-------------DEMQ  304 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~  304 (680)
                      ++-|.-.|+|-. .++-.+.++..-    -|       ....|.-++-.|.+-.+++.|....             .+..
T Consensus       266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii  344 (624)
T 3lvg_A          266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII  344 (624)
T ss_dssp             HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence            777777777763 333333332221    12       3445788888888888877665321             1111


Q ss_pred             hCCCCCCHhh---------------HHHHHHHHhhhcchHHHHHHHHHHHH----------cCCCCchHHHHHHHHHHHH
Q 037256          305 NSDCKPNPVT---------------ALILVSACTYLGSRQLGRKFHGYIIN----------SNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       305 ~~g~~p~~~t---------------~~~ll~a~~~~g~~~~a~~i~~~~~~----------~~~~~~~~~~~~li~~y~k  359 (680)
                      ..  ..|...               ++-++.++...=+...+.++++..-.          -.-..+..+-.++-+.|..
T Consensus       345 ~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE  422 (624)
T 3lvg_A          345 TK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT  422 (624)
T ss_dssp             GG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred             HH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            00  112122               23334444333333333333332110          0012245566677777887


Q ss_pred             cCCHHHHHHHHhhcCCCCCCHh------------HHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSERNVS------------SWN-VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS  426 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~~~------------~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  426 (680)
                      ..+++.-+...+..  ..-|..            -+. .-...|.+++++++++.+.++         ...|.-.+...+
T Consensus       423 EEDy~~LR~SId~y--dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa  491 (624)
T 3lvg_A          423 EEDYQALRTSIDAY--DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYAS  491 (624)
T ss_dssp             TTCCHHHHHTTSSC--CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTT
T ss_pred             hhhHHHHHHHHHHh--ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHH
Confidence            77776655544433  111211            122 223346677777777655431         112333445567


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI  473 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  473 (680)
                      .+|+.+-+.++++-.++.|   +.+.|.+.+-.+...=++|-++++-
T Consensus       492 ~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEla  535 (624)
T 3lvg_A          492 ESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETA  535 (624)
T ss_dssp             TCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHH
Confidence            7888888888888877754   3445555555555566677776663

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.05  E-value=0.31  Score=48.40  Aligned_cols=73  Identities=7%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH
Q 037256          377 ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY  453 (680)
Q Consensus       377 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  453 (680)
                      ..+...|.++...+...|++++|...++++...  .|+...|..+-..+.-.|++++|.+.+++....  .|...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            445566666655555567777777777777764  366556655556666677777777777666654  3444444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.83  E-value=0.022  Score=58.92  Aligned_cols=93  Identities=5%  Similarity=-0.092  Sum_probs=66.2

Q ss_pred             ccCCHHHHHHHHHHhhhc---CCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKL---SVKP----EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIA  499 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~  499 (680)
                      ..|++++|..++++..+.   -+.|    ...+++.|..+|...|++++|+.++++.                    ...
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a--------------------L~i  369 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI--------------------IKP  369 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHH
Confidence            457888888888876653   1222    2467888999999999999999999875                    011


Q ss_pred             HHHHHc-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          500 ANYLFQ-LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       500 ~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      .++.+. -.|+-...+..|+.+|..+|++++|+.++++..+
T Consensus       370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            111111 1233345688899999999999999999999865

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.78  E-value=0.21  Score=49.62  Aligned_cols=66  Identities=18%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 037256          416 ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS  483 (680)
Q Consensus       416 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  483 (680)
                      .+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++. .+.|...
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            344444334444455555555555555443  44444444455555555555555555443 3344433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.45  E-value=0.059  Score=55.69  Aligned_cols=85  Identities=8%  Similarity=-0.045  Sum_probs=62.8

Q ss_pred             hcCChHHHHHHHHHHHHc---CCCCC---H-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-----C-CCcC-hHHHHHHH
Q 037256          392 MHGHGRKALEFFSQMLEE---GVKPD---H-ITFTSILSACSHAGLIDEGRKCFADMTKL-----S-VKPE-VKHYACMV  457 (680)
Q Consensus       392 ~~g~~~~A~~l~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li  457 (680)
                      ..|++++|+.++++.++.   -+.|+   . .+++.|..+|...|++++|..++++..+.     | -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357788888888877652   12333   2 37888888899999999999888887652     2 1233 45688899


Q ss_pred             HHHHhcCCHHHHHHHHHhC
Q 037256          458 DMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       458 ~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..|...|++++|+.++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHH
Confidence            9999999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.34  E-value=0.11  Score=53.84  Aligned_cols=90  Identities=12%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCC-----CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPS-----ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----G-VKPDH-IT  417 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t  417 (680)
                      +.-+.+.|++++|+..+++....     .++    ..+++.+...|...|++++|+.++++.++-     | -.|+. .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33455667777777777765322     222    346777777888888888888887776642     1 22333 35


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          418 FTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       418 ~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            67777777777777777777776554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.23  E-value=1  Score=39.38  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256          254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK  333 (680)
Q Consensus       254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (680)
                      +...++|+++.|.++.+.+  .+...|..|.....+.|+++-|.+.|.+...         +..+.-.|...|+.+.-..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3445677888888777766  4567788888888888888888888776653         3344444555566555555


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      +-+.....|-      ++.-...+.-.|+++++.++|.+.
T Consensus        82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5444444431      233334455567777777777655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.17  E-value=0.11  Score=40.54  Aligned_cols=55  Identities=15%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          388 AGYGMHGHGRKALEFFSQMLEEGVKPD-HI-TFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       388 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ..+...|++++|++.|++..+.  .|+ .. .+..+..++...|++++|.+.|++..+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455566666666666666663  343 34 5555555666666666666666666654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.13  E-value=0.28  Score=46.69  Aligned_cols=115  Identities=10%  Similarity=0.079  Sum_probs=81.6

Q ss_pred             cCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 037256          360 CGDLDTAENMFNDIHPSERNVSSWNVLIAG-YGMH--GH------GRKALEFFSQMLEEGVKPD---HITFTSILSACSH  427 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~  427 (680)
                      .++..+-.+.+.+..+.......|..++.+ +...  |.      ..+|...+++.++  +.|+   ...|..+...|..
T Consensus       134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence            344455555666663334445678777653 3432  32      4577778888888  7787   3478888888888


Q ss_pred             c-----CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 037256          428 A-----GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQM  476 (680)
Q Consensus       428 ~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m  476 (680)
                      .     |+.++|.+.|++..+.+-.-+..++....+.|++. |+.++|.+.+++.
T Consensus       212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4     99999999999999864222477778888999884 9999999999886

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.61  E-value=0.07  Score=41.74  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256          286 GYIQNGQASEALLLFDEMQNSDCKPNPV-TALILVSACTYLGSRQLGRKFHGYIIN  340 (680)
Q Consensus       286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~  340 (680)
                      .+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|...++.+++
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444455555555555444331 11222 333334444444444444444444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.38  Score=42.10  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037256          356 MYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR  435 (680)
Q Consensus       356 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  435 (680)
                      ...++|+++.|.++-+.+    .+...|..|.......|+++-|.+.|.+...         |..+.--|...|+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            344567777777766655    3455677777777777777777777765543         334444455566665555


Q ss_pred             HHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256          436 KCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP  477 (680)
Q Consensus       436 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  477 (680)
                      .+-+.....|      -++.-...+.-.|+++++.+++.+.+
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            4444433333      12333344455677777777776664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.95  E-value=0.46  Score=40.48  Aligned_cols=78  Identities=10%  Similarity=-0.038  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhhhcCCCc--ChHHHHHHHHHHHhcCCHHHHHH
Q 037256          397 RKALEFFSQMLEEGVKPDHITFTSILSACSHAG---LIDEGRKCFADMTKLSVKP--EVKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       397 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      ..+.+.|.+..+.|. ++..+...+..++.+++   ++++|..+|+...+.. .|  +...+-.|.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            455556666666553 56666666777778877   6668888888888764 24  34455556677888888888888


Q ss_pred             HHHhC
Q 037256          472 MIKQM  476 (680)
Q Consensus       472 ~~~~m  476 (680)
                      .++.+
T Consensus        93 y~~~l   97 (152)
T 1pc2_A           93 YVRGL   97 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.90  E-value=10  Score=42.56  Aligned_cols=257  Identities=12%  Similarity=0.079  Sum_probs=133.6

Q ss_pred             HhccCChHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhHHHHHHHHH
Q 037256          221 VGQLGDVLKAQAVHGYAICNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK-RD----------LISWNSMLTGY  287 (680)
Q Consensus       221 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~----------~~~~~~li~~~  287 (680)
                      ....|+.+++..++...+..+  -.+.......+.-+...+|.-+++..++..... .+          +..-.++.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445677777766665443311  111223334444455566665566665554332 22          11122333344


Q ss_pred             HHcCC-hhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--HcCC
Q 037256          288 IQNGQ-ASEALLLFDEMQNSDCKPNPV--TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA--KCGD  362 (680)
Q Consensus       288 ~~~g~-~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~--k~g~  362 (680)
                      +-.|. -+++.+.+..+.... .+...  .-.++...+...|+.+....++..+.+..   +..+...+.-+++  -.|+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            43443 246677777766532 11111  11122233445677777777777766532   3333333444443  5688


Q ss_pred             HHHHHHHHhhcCCCCCCHhHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256          363 LDTAENMFNDIHPSERNVSSWN---VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA  439 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  439 (680)
                      .+.+..+.+.+........-|.   ++..+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++
T Consensus       540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~  618 (963)
T 4ady_A          540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ  618 (963)
T ss_dssp             GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            8888887777633222233343   3345677788877666688888763 22222223333334555666666777776


Q ss_pred             HhhhcCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHh
Q 037256          440 DMTKLSVKPEVKHYACMVDMLGRAGCL-YEAFDMIKQMPLPPNDS  483 (680)
Q Consensus       440 ~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~  483 (680)
                      .+.+.+ .|.+..-..+.-+....|.. .+|.+++..+...+|..
T Consensus       619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~  662 (963)
T 4ady_A          619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF  662 (963)
T ss_dssp             TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred             HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence            666543 56665555555555555554 56777777774344443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.27  E-value=0.29  Score=41.70  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHcC---CHHHHHHHHhhcCCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256          331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCG---DLDTAENMFNDIHPSE-R--NVSSWNVLIAGYGMHGHGRKALEFFS  404 (680)
Q Consensus       331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~  404 (680)
                      +++-+....+.+. ++..+...+.-++.+.+   +++++..+|+.+.... |  +...+-.|.-+|.+.|++++|.+.++
T Consensus        17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3333333333332 34444444444455544   3345555555442222 2  12333444445555666666666666


Q ss_pred             HHHHcCCCCC
Q 037256          405 QMLEEGVKPD  414 (680)
Q Consensus       405 ~m~~~g~~p~  414 (680)
                      .+.+  +.|+
T Consensus        96 ~lL~--ieP~  103 (152)
T 1pc2_A           96 GLLQ--TEPQ  103 (152)
T ss_dssp             HHHH--HCTT
T ss_pred             HHHh--cCCC
Confidence            6655  4554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.26  E-value=0.51  Score=36.55  Aligned_cols=65  Identities=12%  Similarity=0.072  Sum_probs=37.3

Q ss_pred             CchHHHHHHHHHHHHcCC---HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256          345 IDATLRNAVMDMYAKCGD---LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE  409 (680)
Q Consensus       345 ~~~~~~~~li~~y~k~g~---~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  409 (680)
                      .++..+..+..++...++   .++|..+|++.....| ++.++..+...+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344455555555543333   4666666666544344 3555566666666677777777777776663

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.17  E-value=0.0043  Score=62.92  Aligned_cols=240  Identities=10%  Similarity=0.063  Sum_probs=148.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 037256          144 DSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ  223 (680)
Q Consensus       144 ~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  223 (680)
                      .+.+|+.|..++.+.|++.+|.+-|-+  ..|+..|..+|....+.|.+++-+..+...++..-.|.  .=+.++-+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence            455667777777777777766655433  34555667777777777777777776665555432332  23356666777


Q ss_pred             cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhH
Q 037256          224 LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK------------------------RDLIS  279 (680)
Q Consensus       224 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~  279 (680)
                      .+++.+-+++..       .||..-.....+-+...|.++.|.-+|..+..                        .++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            666554333321       35555555666677777777777777766541                        36678


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256          280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k  359 (680)
                      |-.+-.+|...+.+.-|--.--.+.   +.||.  ...++..|...|.+++-..+++...... .....+++-|.-.|+|
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence            8888888888888776644332332   12221  2234455777788887777777665322 3577888888888887


Q ss_pred             cCCHHHHHHHHhhcCC--CCC-------CHhHHHHHHHHHHhcCChHHHHH
Q 037256          360 CGDLDTAENMFNDIHP--SER-------NVSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~--~~~-------~~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      - +.++..+-++..-.  .-|       ....|.-++-.|.+...++.|..
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            6 44555544443311  122       34568899999998888887753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.03  E-value=0.69  Score=36.58  Aligned_cols=69  Identities=20%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      +..-+..|...+.+.|+++.|...|+.....        ......+..+..+|.+.|++++|+..+++..+  +.|+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence            3344455666667777777777776654211        12345667777777777777777777777776  566654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.02  E-value=4.5  Score=33.35  Aligned_cols=85  Identities=15%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      +||++......+-.+   ..+....+.-+......|+-++-.+++..+.. ..+|+......+..||.+.|+..++.+++
T Consensus        73 ~C~NlKrVi~C~~~~---n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           73 KCQNLKSVVECGVIN---NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             GCSCTHHHHHHHHHT---TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHh---cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            455555555555544   33334455556666777777777777777533 25667777777777777777777777777


Q ss_pred             HHhhhcCCC
Q 037256          439 ADMTKLSVK  447 (680)
Q Consensus       439 ~~m~~~~~~  447 (680)
                      .+.-+.|++
T Consensus       149 ~~AC~kG~k  157 (172)
T 1wy6_A          149 IEACKKGEK  157 (172)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHhhhH
Confidence            777776643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.69  E-value=0.59  Score=44.50  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=46.2

Q ss_pred             HHHHHHHhhcCCCCCC---HhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc-cCCHH
Q 037256          364 DTAENMFNDIHPSERN---VSSWNVLIAGYGM-----HGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSH-AGLID  432 (680)
Q Consensus       364 ~~A~~~f~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~-~g~~~  432 (680)
                      ..|...+++..+..|+   -..|..|...|.+     -|+.++|.+.|++.++  +.|+  ..++......++. .|+.+
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3444444444333444   3356666666665     3666677777776666  4553  3455555555555 36677


Q ss_pred             HHHHHHHHhhhcCCC
Q 037256          433 EGRKCFADMTKLSVK  447 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~  447 (680)
                      ++.+.+++.......
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            777777766665433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.65  E-value=11  Score=38.74  Aligned_cols=186  Identities=10%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCC----CCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHH
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHP----SERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPDHITFT  419 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~  419 (680)
                      .+...++.|...+++..|..+++++..    ..++    ...+..++..+...+++.+|.+.|.+..+.- ..-|...+.
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~  258 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWK  258 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHH
Confidence            444556667777777777776666511    1111    2345666666777788888877777765420 111222221


Q ss_pred             HH----HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc--CCHHHHHHHHHhCCCCC---------CHhH
Q 037256          420 SI----LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA--GCLYEAFDMIKQMPLPP---------NDSV  484 (680)
Q Consensus       420 ~l----l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~p---------~~~~  484 (680)
                      .+    +....-.+....-..+.........-++...|..++.+|...  .+++.+.+.|... +.+         ....
T Consensus       259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~-L~~~~~~~~~~~~~~~  337 (445)
T 4b4t_P          259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV-LNEDDLAFGGEANKHH  337 (445)
T ss_dssp             HHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS-TTTCCSSCCCSCSSHH
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH-hcccchhhhcchhhHH
Confidence            11    111111111111222223322322246777888999998764  4577777777654 111         1345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256          485 WGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL  542 (680)
Q Consensus       485 ~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  542 (680)
                      |..|......|....+.+.     -+...+..++..+.-  ..+++++....|...|.
T Consensus       338 ~~~L~~~v~ehnl~~i~k~-----Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~  388 (445)
T 4b4t_P          338 WEDLQKRVIEHNLRVISEY-----YSRITLLRLNELLDL--TESQTETYISDLVNQGI  388 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----EEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHH-----hceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence            7888887777743333322     122334445444432  35788999999987664

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.30  E-value=5.4  Score=32.87  Aligned_cols=135  Identities=10%  Similarity=0.006  Sum_probs=73.8

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF  470 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  470 (680)
                      .-.|..++..++..+...+.   +..-++.++--....-+-+-..++++..-+.   .|          ...+|++....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence            34577777777777776632   3344555554444444444555555544332   11          12233333333


Q ss_pred             HHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 037256          471 DMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK  543 (680)
Q Consensus       471 ~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  543 (680)
                      ..+-.++.  +......-|......     -++....++.-+|-+++...-++++|.+.|+..+|.+++++.-++|++
T Consensus        82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            33333321  111122222222222     122233333345556889999999999999999999999999999984

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=90.50  E-value=1.5  Score=34.64  Aligned_cols=58  Identities=9%  Similarity=-0.005  Sum_probs=32.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHhhhc--C----CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          419 TSILSACSHAGLIDEGRKCFADMTKL--S----VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       419 ~~ll~a~~~~g~~~~a~~~~~~m~~~--~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ..+...+...|+++.|...|+...+.  .    -.+....+..|..+|.+.|++++|...+++.
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34445555556666666655555443  0    1234455666666677777777766666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.98  E-value=2.9  Score=34.14  Aligned_cols=85  Identities=11%  Similarity=-0.005  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhhhcCCCc--ChHHHHHHHHHHHhcCCHHHHH
Q 037256          396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDE---GRKCFADMTKLSVKP--EVKHYACMVDMLGRAGCLYEAF  470 (680)
Q Consensus       396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~  470 (680)
                      ...+.+-|.+....|. |+..+-..+..++.++.....   ++.+++.+.+.+ .|  .....-.|.-++.|.|++++|.
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            3445555555555553 666666666777777776655   888888887764 23  3333445667788999999998


Q ss_pred             HHHHhC-CCCCCH
Q 037256          471 DMIKQM-PLPPND  482 (680)
Q Consensus       471 ~~~~~m-~~~p~~  482 (680)
                      +.++.+ ..+|+.
T Consensus        95 ~~~~~lL~~eP~n  107 (126)
T 1nzn_A           95 KYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            888775 444543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.87  E-value=17  Score=35.00  Aligned_cols=133  Identities=11%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHH----HHHHHHcCCCCCHhHHHHHHHHHh
Q 037256          147 VQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALIL----FQKTQQEGLLSDSVTIVSVASAVG  222 (680)
Q Consensus       147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~  222 (680)
                      .|.++..-|.+.+++++|.+++..           -...+.+.|+...|-++    .+-..+.+++++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345566667888888888887543           23445667777666654    344455678888888777777765


Q ss_pred             ccCChH-HHHHHHHHHH----HccC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 037256          223 QLGDVL-KAQAVHGYAI----CNAF--LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQN  290 (680)
Q Consensus       223 ~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~  290 (680)
                      ....-+ .-..+...++    +.|-  .-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            532111 1123333333    3332  236778888888899999999988877633323455555555544443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.66  E-value=22  Score=41.66  Aligned_cols=198  Identities=13%  Similarity=0.105  Sum_probs=117.6

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CC-----------------
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ER-----------------  378 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~-----------------  378 (680)
                      .++..+...+..+.+.++....     +.+....-.+..+|..+|++++|.+.|.+.... ..                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            4555566667777666654432     344445456678899999999999999886221 00                 


Q ss_pred             ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc
Q 037256          379 ------NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--I--TFTSILSACSHAGLIDEGRKCFADMTKLSVKP  448 (680)
Q Consensus       379 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p  448 (680)
                            -..-|..++..|.+.|.++.++++-+..++..-.-+.  .  .|..+..++...|++++|...+-.+.....  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence                  0122566777888888888888887777664322121  2  467778888888999988888877765432  


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC-CchHHHHHHHHHhcCCh
Q 037256          449 EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH-TGYFVLMSNIYAASNKW  527 (680)
Q Consensus       449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~~g~~  527 (680)
                      -......||..++..|..++-..    +|..........+|..-++.       .  .+|.+ +.+|..|-.-+...|++
T Consensus       970 r~~cLr~LV~~lce~~~~~~L~~----lpf~gl~~~Vd~IL~~kAr~-------~--~~~~~~p~Yy~iLYs~ri~r~dy 1036 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQLLN----YSMPTLRQDVDNLLERKAFQ-------M--INVESQPCWYNILFSWRYKHQNY 1036 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHH----HTTTSCHHHHHHHHHHHHHH-------H--HHHCCSTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCChhhhhC----CCCccHHHHHHHHHHHHHHh-------C--CccccCCCHHHHhHhhhhccCCh
Confidence            34556677777777776654332    33222211222222111110       0  12222 34566666666777777


Q ss_pred             hHHHHHH
Q 037256          528 REVGKLR  534 (680)
Q Consensus       528 ~~A~~~~  534 (680)
                      ..|..++
T Consensus      1037 R~AA~vm 1043 (1139)
T 4fhn_B         1037 RDAAAII 1043 (1139)
T ss_dssp             SCHHHHH
T ss_pred             HHHHHHH
Confidence            7666544

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=87.88  E-value=7.3  Score=29.98  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          226 DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       226 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+...-||.++|-+|-..  +.|..+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence            45556666555555443  223323334567789999999999999999999999887654  77888888888888887


Q ss_pred             CCCCCCHhhHH
Q 037256          306 SDCKPNPVTAL  316 (680)
Q Consensus       306 ~g~~p~~~t~~  316 (680)
                      +| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            77 56555553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.80  E-value=4.7  Score=32.93  Aligned_cols=85  Identities=12%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH---HHHHHhhcCCCC-C--CHhHHHHHHHHHHhcCChHHHHH
Q 037256          328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT---AENMFNDIHPSE-R--NVSSWNVLIAGYGMHGHGRKALE  401 (680)
Q Consensus       328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~---A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~  401 (680)
                      +..+++-+......|. ++..+--.+.-++.+.....+   +..+++.+.... |  .-...-.|.-++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444444433332 444444445555555554444   555565553332 2  11223334455666666666666


Q ss_pred             HHHHHHHcCCCCCH
Q 037256          402 FFSQMLEEGVKPDH  415 (680)
Q Consensus       402 l~~~m~~~g~~p~~  415 (680)
                      .++.+.+  +.|+.
T Consensus        96 ~~~~lL~--~eP~n  107 (126)
T 1nzn_A           96 YVRGLLQ--TEPQN  107 (126)
T ss_dssp             HHHHHHH--HCTTC
T ss_pred             HHHHHHH--hCCCC
Confidence            6666666  45543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=86.78  E-value=6.9  Score=30.08  Aligned_cols=86  Identities=12%  Similarity=-0.000  Sum_probs=61.0

Q ss_pred             ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256          226 DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN  305 (680)
Q Consensus       226 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (680)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+...-||.++|-+|-.  .+.|..+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45556666555555443  22332333456778999999999999999999999988765  478888888888888887


Q ss_pred             CCCCCCHhhHH
Q 037256          306 SDCKPNPVTAL  316 (680)
Q Consensus       306 ~g~~p~~~t~~  316 (680)
                      +| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            77 66555553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.10  E-value=33  Score=35.17  Aligned_cols=94  Identities=11%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCcC--hH
Q 037256          383 WNVLIAGYGMHGHGRKALEFFSQMLEE--GVKPDH---ITFTSILSACSHAGLIDEGRKCFADMTKL----SVKPE--VK  451 (680)
Q Consensus       383 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~--~~  451 (680)
                      ...|...|...|++.+|.+++.++...  |..+..   ..+..-+..|...+++..|..++.++...    ...|+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            455677788889999999999888753  222221   24566677888899999999988887532    22222  34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          452 HYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       452 ~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .|.+++..+...+++.+|.+.|.+.
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5778888888899999988777665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.53  E-value=9.3  Score=32.22  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=27.2

Q ss_pred             CCChhHHHHHHHHHHHcCCh------hHHHHHHHHHHhCCCCCC
Q 037256          274 KRDLISWNSMLTGYIQNGQA------SEALLLFDEMQNSDCKPN  311 (680)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~  311 (680)
                      ..|..+|-..+...-+.|+.      ++..++|++.... ++|+
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~   52 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD   52 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence            35777888888877777888      7777888877753 5665

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.28  E-value=29  Score=33.77  Aligned_cols=133  Identities=11%  Similarity=0.045  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHH----HHHHHcCCCCCHhHHHHHHHHHhc
Q 037256          148 QAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF----QKTQQEGLLSDSVTIVSVASAVGQ  223 (680)
Q Consensus       148 ~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~  223 (680)
                      +.++..-|.+.+++++|.+++-.           -...+.+.|+...|-++-    +-+.+.++++|..+...++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            44555667888888888887533           234456677776665554    444567888888887777777765


Q ss_pred             cCChH-HHHHHHHHHH----Hcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256          224 LGDVL-KAQAVHGYAI----CNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG  291 (680)
Q Consensus       224 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g  291 (680)
                      ...-+ .=..+...++    +.|  ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~  181 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD  181 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            54321 1122333333    333  23456677777788888888888887774322222345544444443333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.19  E-value=7.5  Score=33.37  Aligned_cols=114  Identities=8%  Similarity=-0.010  Sum_probs=60.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCC---CCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHP---SERNV-------SSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPDHI-TFTS  420 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~---~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~  420 (680)
                      -+..+...|.++.|+-+.+.+..   ..+++       .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            35566667777777776665421   13332       134455666777777777777777765421 112111 1111


Q ss_pred             HHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 037256          421 ILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP  479 (680)
Q Consensus       421 ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  479 (680)
                      +-   .. .....         .....++.+.--.+..+|.+.|+.++|+.+++.+|.+
T Consensus       106 ~~---~~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          106 TG---NS-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             cc---cc-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            10   00 00000         0012334455555778899999999999999998654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.06  E-value=7.2  Score=42.86  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256          377 ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG  429 (680)
Q Consensus       377 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g  429 (680)
                      +.+..-|..|.....+.+++++|.+.|+....  .+-+...+..||..|...+
T Consensus       610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~  660 (754)
T 4gns_B          610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP  660 (754)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence            44555677776666666777777777766665  3456666666666665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.95  E-value=16  Score=30.47  Aligned_cols=45  Identities=2%  Similarity=0.027  Sum_probs=35.7

Q ss_pred             HHHHHHHHHccCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          496 GEIAANYLFQLEPE-HTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       496 ~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      |...++.++.-.|. .....+.|+-.+.+.|++++|.++.+.+.+.
T Consensus        61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            55566666666663 4567788999999999999999999999873

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.90  E-value=4  Score=44.85  Aligned_cols=50  Identities=12%  Similarity=0.033  Sum_probs=34.0

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHh
Q 037256          390 YGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADM  441 (680)
Q Consensus       390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m  441 (680)
                      +...|+++-|+++-++...  ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4456777777777777766  45654 37777777777777777777776665

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.84  E-value=30  Score=33.63  Aligned_cols=167  Identities=12%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHhCCCCCCHhhHHHHHHHHhh
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF----DEMQNSDCKPNPVTALILVSACTY  324 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~  324 (680)
                      +.++..=|.+.+++++|.+++-.           -...+.+.|+...|-++-    +-..+.++++|..+...++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            34566678899999999987643           233456677766655544    445567888888888888877766


Q ss_pred             hcchHH-HHHHHHHH----HHcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChH
Q 037256          325 LGSRQL-GRKFHGYI----INSN--MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGR  397 (680)
Q Consensus       325 ~g~~~~-a~~i~~~~----~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~  397 (680)
                      ...-+- -..+.+.+    .+.|  ..-|+.....+...|.+.+++.+|+.-|-.-  ..+.+..+..|+.-+...+...
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg--~~~s~~~~a~mL~ew~~~~~~~  184 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG--TKESPEVLARMEYEWYKQDESH  184 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS--CTTHHHHHHHHHHHHHHTSCGG
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcCCc
Confidence            553221 12233333    3333  3457788888999999999999999998422  3333455644444433333211


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          398 KALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       398 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                                    .+|...-..++ -|.-.+++..|..+++...+
T Consensus       185 --------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          185 --------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             --------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence                          11222222233 35556788888887666553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.57  E-value=21  Score=41.83  Aligned_cols=167  Identities=8%  Similarity=-0.001  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (680)
                      ...++..+.+.+..+.|.++..-.+. ++.+--.+..+|...|++++|.+.|++.-. |+..+......          .
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~----------~  882 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------L  882 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSS----------H
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhh----------h
Confidence            34566667778888888776655544 555545667788999999999999987532 22221110000          0


Q ss_pred             HHHHHHHHHHHHc-C-CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcC----CCCCC--HhHHHHHHHHHHhcCChHHHH
Q 037256          329 QLGRKFHGYIINS-N-MKIDATLRNAVMDMYAKCGDLDTAENMFNDIH----PSERN--VSSWNVLIAGYGMHGHGRKAL  400 (680)
Q Consensus       329 ~~a~~i~~~~~~~-~-~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~  400 (680)
                      ..    ...+... . ...-..-|.-++..+.+.+.++.+.+.-....    +..++  ...|..+..++...|++++|.
T Consensus       883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay  958 (1139)
T 4fhn_B          883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH  958 (1139)
T ss_dssp             HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred             cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence            00    0001110 0 11123345566667777777776665544321    11122  125788888888889998888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 037256          401 EFFSQMLEEGVKPDHITFTSILSACSHAGLIDE  433 (680)
Q Consensus       401 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  433 (680)
                      ..+-.+.....+  ...+..|+...+..|..+.
T Consensus       959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence            888777664333  3455556666665555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=84.41  E-value=5.3  Score=33.68  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHhhh
Q 037256          377 ERNVSSWNVLIAGYGMHGHG------RKALEFFSQMLEEGVKPDHI----TFTSILS---ACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       377 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~  443 (680)
                      ..|..+|-..+.-.-+.|+.      ++..++|++.... ++|+..    .|.-+.-   .+...+++++|.++|+.+++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45677777777777777887      7778888887775 666542    1211111   12334788889999998876


Q ss_pred             cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+-.- ...|-.....-.|.|+++.|.+++.+.
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A  120 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKA  120 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            52222 667777777777899999998888764

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.09  E-value=15  Score=28.27  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=52.9

Q ss_pred             chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256          327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQM  406 (680)
Q Consensus       327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  406 (680)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+..  ..||...|-+|-..  +.|..+++..-+.++
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce~--rlGl~s~le~rL~~l   95 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL--AYPDLEPWLALCEY--RLGLGSALESRLNRL   95 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS--CCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            34556556555555442  2233223344566788888888888887  68888888777654  567777776666666


Q ss_pred             HHcCCCCCHHHHH
Q 037256          407 LEEGVKPDHITFT  419 (680)
Q Consensus       407 ~~~g~~p~~~t~~  419 (680)
                      ..+| .|....|.
T Consensus        96 a~sg-~p~~q~Fa  107 (116)
T 2p58_C           96 ARSQ-DPRIQTFV  107 (116)
T ss_dssp             TTCC-CHHHHHHH
T ss_pred             HhCC-CHHHHHHH
Confidence            6654 44444443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.43  E-value=40  Score=32.50  Aligned_cols=166  Identities=13%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256          249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLL----FDEMQNSDCKPNPVTALILVSACTY  324 (680)
Q Consensus       249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~  324 (680)
                      +.++..=|.+.+++++|.+++..           -...+.+.|+...|-++    ++-..+.+++++..+...++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            35567778889999999988643           23345667777666554    4555567888898888888877765


Q ss_pred             hcch-----HHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc---C
Q 037256          325 LGSR-----QLGRKFHGYIINSN--MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH---G  394 (680)
Q Consensus       325 ~g~~-----~~a~~i~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~---g  394 (680)
                      ...-     .-.......-.+.|  ..-++.....+...|.+.|++.+|+.-|-.-  ...+...+..|+.-+...   |
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~~~s~~~~a~~l~~w~~~~~~~  182 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--THDSMIKYVDLLWDWLCQVDDI  182 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCccHHHHHHHHHHHHHhcCCC
Confidence            3321     22222233333333  2347888899999999999999999988633  222344554444433333   3


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256          395 HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT  442 (680)
Q Consensus       395 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~  442 (680)
                      ...++--              ..-..++ -|.-.|++..|..+|+...
T Consensus       183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            3332211              1111222 3456688888888887654

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.14  E-value=14  Score=28.35  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256          327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQM  406 (680)
Q Consensus       327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  406 (680)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+..  ..||...|-+|-..  +.|..+++..-+.++
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce~--rlGl~s~le~rL~~l   94 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN--PWPALEPWFALCEW--HLGLGAALDRRLAGL   94 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC--CCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            34556666666555443  3333333344566788888888888887  68888888777653  677777777777677


Q ss_pred             HHcCCCCCHHHHH
Q 037256          407 LEEGVKPDHITFT  419 (680)
Q Consensus       407 ~~~g~~p~~~t~~  419 (680)
                      ..+| .|....|.
T Consensus        95 a~sg-~p~~q~Fa  106 (115)
T 2uwj_G           95 GGSS-DPALADFA  106 (115)
T ss_dssp             HTCS-SHHHHHHH
T ss_pred             HhCC-CHHHHHHH
Confidence            7665 45444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=80.67  E-value=7  Score=39.40  Aligned_cols=68  Identities=7%  Similarity=0.039  Sum_probs=44.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh----c-CCCcChHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK----L-SVKPEVKH  452 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~  452 (680)
                      ..++..+...|++.+|+..+..+... -+-+...+..++.++...|+..+|++.|+...+    . |+.|...+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            33455666777777777777777663 223555777777777777777777777776543    1 77776654

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=80.11  E-value=62  Score=34.88  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q 037256           77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASN  123 (680)
Q Consensus        77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  123 (680)
                      .| .+|-.+.|.|.+++|.++.++.... +.--...|...+..++..
T Consensus       155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s  199 (661)
T 2qx5_A          155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS  199 (661)
T ss_dssp             HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred             cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence            45 5677888999999999988766432 111124677777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	680
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.84
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.82
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.8
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.31
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.16
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.11
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.94
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.93
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.85
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.69
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.38
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.94
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.17
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.08
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	90.07
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	89.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.88
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	81.99

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-19  Score=183.02  Aligned_cols=375  Identities=12%  Similarity=0.091  Sum_probs=201.2

Q ss_pred             HHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 037256           83 RAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTD  162 (680)
Q Consensus        83 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~  162 (680)
                      ..+.+.|++++|++.|+++.+..+ -+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence            344555666666666666554321 133445555555555566666666665555543 223444555555555555555


Q ss_pred             HHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256          163 DGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC  239 (680)
Q Consensus       163 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  239 (680)
                      +|...+.....   .+...+..........+....+...........                                 
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------  131 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---------------------------------  131 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc---------------------------------
Confidence            55555544331   122223333333333333333333333332221                                 


Q ss_pred             ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256          240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL  316 (680)
Q Consensus       240 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (680)
                         .................+....+...+.....   .+...+..+...+...|++++|...+++..+.. +-+...+.
T Consensus       132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  207 (388)
T d1w3ba_         132 ---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI  207 (388)
T ss_dssp             ---TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             ---cccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence               11222222233333333444444333333221   233444445555555555555555555554431 12233444


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCC
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGH  395 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~  395 (680)
                      .+...+...|++++|...+....+.+ +.+...+..+...|.+.|++++|...|++.....| +..+|..+...|...|+
T Consensus       208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44445555555555555555544443 33445555566666677777777777766543333 35566777777777777


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256          396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  475 (680)
                      +++|++.++..... .+.+...+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|.+.++ 
T Consensus       287 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-  363 (388)
T d1w3ba_         287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK-  363 (388)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH-
T ss_pred             HHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence            77777777776664 23344566666667777777777777777766542 2345566667777777777777766665 


Q ss_pred             CCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 037256          476 MPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNK  526 (680)
Q Consensus       476 m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~  526 (680)
                                                ++++++|+++.+|..|+.+|.+.|+
T Consensus       364 --------------------------~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         364 --------------------------EAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             --------------------------HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             --------------------------HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                      4467788888888889888887774

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.7e-19  Score=180.60  Aligned_cols=366  Identities=9%  Similarity=0.033  Sum_probs=237.2

Q ss_pred             CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256           56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG  134 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  134 (680)
                      |++++|.+.|+++.+..| +..+|..+...+.+.|++++|+..|++..+..+. +..++..+...+...|++++|...+.
T Consensus        13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~   91 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccccccccc
Confidence            999999999999988888 5778999999999999999999999999886432 56788889999999999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH
Q 037256          135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEM---SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS  211 (680)
Q Consensus       135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  211 (680)
                      ...+.. +.+..........+...+....+.......   .......+..........+....+...+.+..... +-+.
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  169 (388)
T d1w3ba_          92 HALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA  169 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchh
Confidence            999876 344444444555555555555554444332   23455566666777777888888888887776653 2344


Q ss_pred             hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 037256          212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYI  288 (680)
Q Consensus       212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~  288 (680)
                      ..+..+...+...|+.+.|...+...++.. +.+...+..+...|...|++++|...|+....   .+...|..+...+.
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence            556666677777788888887777776653 33455666667777777777777777665542   34555666666677


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256          289 QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN  368 (680)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~  368 (680)
                      +.|++++|+..|++..+.. +-+..++..+..++...|+.++|.+.+....+.. +.+...+..+...|.+.|++++|.+
T Consensus       249 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHH
Confidence            7777777777777666542 2234455555555555555555555555554443 3344455555555555555555555


Q ss_pred             HHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC
Q 037256          369 MFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAG  429 (680)
Q Consensus       369 ~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g  429 (680)
                      .|++.....|+ ..+|..+...|.+.|++++|++.|++..+  +.|+. ..+..+..++.+.|
T Consensus       327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence            55555433332 34455555555555555555555555544  34432 24444444444333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-11  Score=119.80  Aligned_cols=239  Identities=11%  Similarity=0.061  Sum_probs=144.7

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcC
Q 037256          181 VMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG  260 (680)
Q Consensus       181 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g  260 (680)
                      .....+.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|...+..+++.. +.+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34555667777777777777776653 2234455555556666666666666666655543 223444555555555555


Q ss_pred             CHHHHHHHHHhcCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256          261 NVEKARLVFDMMEKRDLI---SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY  337 (680)
Q Consensus       261 ~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~  337 (680)
                      ++++|.+.++.....++.   .+.......                    ...+.......+..+...+....+...+..
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            555555555443211100   000000000                    000000011112223344556667777776


Q ss_pred             HHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256          338 IINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH  415 (680)
Q Consensus       338 ~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  415 (680)
                      +++... ..+..++..+...+.+.|++++|...|++.....| +...|..+...|...|++++|++.|++..+  +.|+.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~  239 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGY  239 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--Hhhcc
Confidence            665432 34567778888888888999999998888744444 477888888888999999999999998887  45654


Q ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          416 -ITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       416 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                       ..+..+..+|.+.|++++|++.|++.++
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             4678888888899999999999888776

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-11  Score=123.09  Aligned_cols=224  Identities=13%  Similarity=0.059  Sum_probs=141.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256          252 IVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR  328 (680)
Q Consensus       252 Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (680)
                      ....|.+.|++++|...|+++.+   .++.+|..+...|...|++++|+..|.+..+.                      
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----------------------   82 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL----------------------   82 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc----------------------
Confidence            34445555666666665555432   23445555555555555555555555555543                      


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------------HhHHHHHHHHHHh
Q 037256          329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------------VSSWNVLIAGYGM  392 (680)
Q Consensus       329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------------~~~~~~li~~~~~  392 (680)
                                   . +.+...+..+...|.+.|++++|.+.+++.....|+                .......+..+..
T Consensus        83 -------------~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (323)
T d1fcha_          83 -------------K-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  148 (323)
T ss_dssp             -------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred             -------------c-cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence                         2 223334444444445555555555544443211111                1111112223344


Q ss_pred             cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256          393 HGHGRKALEFFSQMLEEGV-KPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFD  471 (680)
Q Consensus       393 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  471 (680)
                      .+...+|.+.|.+..+... .++...+..+...+...|++++|...|++..... +-+...|..+...|.+.|++++|.+
T Consensus       149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHH
Confidence            5667788888888776321 2234567777778888899999999998887653 3356778888888899999998887


Q ss_pred             HHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256          472 MIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN  539 (680)
Q Consensus       472 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  539 (680)
                      .+++                           +++++|+++.++..++.+|.+.|++++|++.+++..+
T Consensus       228 ~~~~---------------------------al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         228 AYRR---------------------------ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHH---------------------------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHH---------------------------HHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7764                           3567899999999999999999999999999999876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.6e-07  Score=93.01  Aligned_cols=287  Identities=13%  Similarity=-0.001  Sum_probs=169.1

Q ss_pred             HHHHhCCCccHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC-----ChhHHHHHHH
Q 037256          184 TAYEQAEKPEEALILFQKTQQEGLLSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE-----DLCIQNSIVA  254 (680)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~  254 (680)
                      ..+...|++++|++++++..+.....+    ...+..+...+...|++++|...+..+++.....     ....+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            334455555555555555544321111    1123334444555555555555555554322110     1223344555


Q ss_pred             HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCCHhhHHHHH
Q 037256          255 MYARCGNVEKARLVFDMMEK-------R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSD----CKPNPVTALILV  319 (680)
Q Consensus       255 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll  319 (680)
                      .|...|++..|...+.....       +    ....+..+...+...|+++.+...+.......    ......++....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            66667777666666654321       1    11244556667777888888888777766432    122233444555


Q ss_pred             HHHhhhcchHHHHHHHHHHHHc----CCCC--chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-----HhHHHHHHH
Q 037256          320 SACTYLGSRQLGRKFHGYIINS----NMKI--DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-----VSSWNVLIA  388 (680)
Q Consensus       320 ~a~~~~g~~~~a~~i~~~~~~~----~~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~  388 (680)
                      ..+...+....+...+......    +..+  ....+..+...+...|++++|...++......+.     ...+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            5566677777777766655432    1111  2334566677888999999999999987554321     345667788


Q ss_pred             HHHhcCChHHHHHHHHHHHH----cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCcC----hHHHHH
Q 037256          389 GYGMHGHGRKALEFFSQMLE----EGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL----SVKPE----VKHYAC  455 (680)
Q Consensus       389 ~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~----~~~~~~  455 (680)
                      .|...|++++|...+++...    .+..|+.. ++..+...+...|++++|.+.+++..+.    |....    ......
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~  339 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ  339 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence            89999999999999998764    24555543 6777788899999999999999887653    32211    123344


Q ss_pred             HHHHHHhcCCHHHHH
Q 037256          456 MVDMLGRAGCLYEAF  470 (680)
Q Consensus       456 li~~~~~~g~~~~A~  470 (680)
                      ++..+...++++++.
T Consensus       340 ~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         340 QLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHTTCSCHHH
T ss_pred             HHHHHHhcCCChHHH
Confidence            455555666665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=8.4e-09  Score=97.97  Aligned_cols=190  Identities=12%  Similarity=-0.030  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSAC  425 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~  425 (680)
                      .++..+..+|.+.|++++|.+.|++.....| ++.+|+.+..+|.+.|++++|++.|++..+  +.|+. .++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence            3555566777778888888888877744444 466777788888888888888888888877  45543 4666777777


Q ss_pred             HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH---------
Q 037256          426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH---------  495 (680)
Q Consensus       426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~---------  495 (680)
                      ...|++++|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++...++.+ ..+...         
T Consensus       116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV-EFYLGNISEQTLMER  193 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH-HHHTTSSCHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH-HHHHHHHHHHHHHHH
Confidence            77888888888887777653 233333333444445555544444433332 112222222211 111100         


Q ss_pred             HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256          496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG  541 (680)
Q Consensus       496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  541 (680)
                      +...........|+...++..|+.+|...|++++|.+.+++..+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            1111222333556666788899999999999999999999988643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.9e-08  Score=94.39  Aligned_cols=205  Identities=11%  Similarity=0.059  Sum_probs=100.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc
Q 037256          252 IVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNG-QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS  327 (680)
Q Consensus       252 Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  327 (680)
                      +...+.+.+..++|.++++++.+   .+..+|+....++...| ++++|+..+++..+.. +-+..+|......+...|+
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc
Confidence            33344444455555555554432   13344454444444443 2455555555554432 2234444444445555555


Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCC------hHHHH
Q 037256          328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGH------GRKAL  400 (680)
Q Consensus       328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~------~~~A~  400 (680)
                      +++|...+..+++.. +.+..+|+.+...+.+.|++++|.+.|+++....| +..+|+.+...+.+.+.      +++|+
T Consensus       128 ~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai  206 (315)
T d2h6fa1         128 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV  206 (315)
T ss_dssp             CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence            555555555555443 33455556666666666666666666665533333 45556555544444333      45666


Q ss_pred             HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC-CCcChHHHHHHHHHHH
Q 037256          401 EFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS-VKPEVKHYACMVDMLG  461 (680)
Q Consensus       401 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~  461 (680)
                      +.+.+..+  ..|+ ...|..+...+... ..+++.+.++...+.. ...+...+..+++.|.
T Consensus       207 ~~~~~al~--~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         207 QYTLEMIK--LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHH--HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            66666666  3443 33444444333333 2355555555554431 1223344445555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=2.8e-07  Score=91.13  Aligned_cols=259  Identities=11%  Similarity=0.043  Sum_probs=187.3

Q ss_pred             HHHHhccCChHHHHHHHHHHHHccCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHH
Q 037256          218 ASAVGQLGDVLKAQAVHGYAICNAFLED----LCIQNSIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSML  284 (680)
Q Consensus       218 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li  284 (680)
                      ...+...|++++|.+++...++.....+    ...++.+...|...|++++|...|++..+     ++    ..++..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3456788999999999999988643322    24667788899999999999999988753     12    24566677


Q ss_pred             HHHHHcCChhHHHHHHHHHHh----CCCCC--C-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC----CCchHHHHHH
Q 037256          285 TGYIQNGQASEALLLFDEMQN----SDCKP--N-PVTALILVSACTYLGSRQLGRKFHGYIINSNM----KIDATLRNAV  353 (680)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~----~g~~p--~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~----~~~~~~~~~l  353 (680)
                      ..+...|++..|...+.+...    .+...  . ...+..+...+...|+++.+...+........    ......+..+
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            788999999999999887653    22121  1 23445566778889999999999988876432    2334555666


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCC----CCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHP----SER----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD---HITFTSIL  422 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll  422 (680)
                      ...+...++..++...+.....    ...    ....+..+...+...|++++|...+.+........+   ...+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            7778888888888777765411    111    133566677788899999999999988765322222   23556677


Q ss_pred             HHHHccCCHHHHHHHHHHhhhc----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          423 SACSHAGLIDEGRKCFADMTKL----SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       423 ~a~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .++...|++++|...++.....    +..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8899999999999999987643    44443 456788889999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.2e-07  Score=90.50  Aligned_cols=180  Identities=9%  Similarity=0.052  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHHcCChhHHHHHHHH
Q 037256          227 VLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-D-LISWNSMLTGYIQNGQASEALLLFDE  302 (680)
Q Consensus       227 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~  302 (680)
                      .+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+  + + ...|...+....+.|+.++|.++|.+
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            455666666666554445555666666666677777777777766543  1 2 23566666666666667777777766


Q ss_pred             HHhCCCCCCHhhHHHHHH-HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---
Q 037256          303 MQNSDCKPNPVTALILVS-ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER---  378 (680)
Q Consensus       303 m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---  378 (680)
                      +.+.+.. +...+..... -+...|+.+.|..+++.+.+.. +.+...+...++.+.+.|+++.|+.+|++.....|   
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            6654322 2222222111 1223455555666666555542 33455555555555555666666665555422111   


Q ss_pred             --CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          379 --NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       379 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                        ....|...+.--..+|+.+.+.++++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              123455555544555555555555555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=5e-07  Score=87.93  Aligned_cols=184  Identities=12%  Similarity=0.061  Sum_probs=126.9

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256          292 QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN  371 (680)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~  371 (680)
                      ..++|..+|++..+...+-+...+...+......|+.+.++.+++.+++........+|..++..+.+.|+++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34667777777765543444455556666667777778888887777765433344567788888888888888888888


Q ss_pred             hcCCCCCC-HhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCc
Q 037256          372 DIHPSERN-VSSWNVLIAG-YGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKP  448 (680)
Q Consensus       372 ~~~~~~~~-~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p  448 (680)
                      ++....|+ ...|...... +...|+.+.|..+|+++... .+.+...|...+......|+++.|+.+|++..+. +..|
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            87544443 3334333322 34467888888888888874 2333457788888888888888888888888776 4454


Q ss_pred             C--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          449 E--VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       449 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .  ...|...+..-.+.|+.+.+.++.+++
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3  456777777777888888888888775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5e-07  Score=88.11  Aligned_cols=194  Identities=12%  Similarity=0.054  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccC-ChHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 037256          178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS-VTIVSVASAVGQLG-DVLKAQAVHGYAICNAFLEDLCIQNSIVAM  255 (680)
Q Consensus       178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~  255 (680)
                      .|+.+...+.+.+.+++|+++++++++.  .|+. ..|.....++...+ ++++|...+..+++.. +.           
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~-----------  110 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK-----------  110 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT-----------
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hh-----------
Confidence            5666666677777777777777777765  2333 23344444444333 3455555555554443 22           


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHH
Q 037256          256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFH  335 (680)
Q Consensus       256 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~  335 (680)
                                          +..+|+.+...+.+.|++++|++.++++.+.. +-+...|..+...+...|+++.|.+.+
T Consensus       111 --------------------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~  169 (315)
T d2h6fa1         111 --------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV  169 (315)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             --------------------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence                                34444444444445555555555555544432 223444444444455555555555555


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHHcCC------HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          336 GYIINSNMKIDATLRNAVMDMYAKCGD------LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~y~k~g~------~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      ..+++.+ +.+...|+.+...+.+.+.      +++|.+.+.......| +...|+.+...+.. ...+++.+.++...+
T Consensus       170 ~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         170 DQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             HHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence            5554443 2344444444444444443      4556666655533333 45666666554433 335666667766666

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.1e-08  Score=101.43  Aligned_cols=211  Identities=9%  Similarity=-0.058  Sum_probs=119.0

Q ss_pred             hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHhhHH-HHHHHHhhhcchHHH
Q 037256          258 RCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQ--ASEALLLFDEMQNSDCKPNPVTAL-ILVSACTYLGSRQLG  331 (680)
Q Consensus       258 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a  331 (680)
                      ..|.+++|..+|+...+   ++...|..+..++...++  +++|+..+.++.+.. +++...+. .....+...+..+.|
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence            33445566666665542   355566666666555543  667777777776543 22333332 233444555666666


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256          332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV  411 (680)
Q Consensus       332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  411 (680)
                      ...++.+++.+ +.+...++.+..+|.+.|++++|...++......|+.   ......+...+..+++...+......  
T Consensus       164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--  237 (334)
T d1dcea1         164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--  237 (334)
T ss_dssp             HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--
Confidence            66666665554 3456666667777777777766655444331111111   11222334455566666666666653  


Q ss_pred             CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          412 KPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       412 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .|+ ..++..+...+...|+.++|...+.+..+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus       238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            333 3344555556666677777777777666543 334556666777777777777777777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=6.9e-08  Score=95.47  Aligned_cols=247  Identities=9%  Similarity=-0.027  Sum_probs=171.6

Q ss_pred             CChHHHHHHhhhccCCCCC-cchHHHHHHHHH---h-------CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q 037256           56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYA---N-------NGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS  124 (680)
Q Consensus        56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~---~-------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  124 (680)
                      +..++|+++++.+....|+ ...|+..-..+.   .       .|.+++|+.+|+...+..++ +...|..+..++...+
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence            4568999999999888885 446765433322   2       34478899999998876422 5556666666666554


Q ss_pred             --ChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHH
Q 037256          125 --LILEGKVVHGDIIRTGFLSDSYVQA-ALVDMYAKCGQTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALIL  198 (680)
Q Consensus       125 --~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~  198 (680)
                        +.+++...+..+++.. +++...+. .+...+...+..++|+..++.....   +..+|+.+...+.+.|++++|...
T Consensus       122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence              5889999999999875 34455544 4446777889999999999988753   677899999999999999888766


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-
Q 037256          199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDL-  277 (680)
Q Consensus       199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-  277 (680)
                      +.+..+.  .|+.   ......+...+..+++...+....... +++...+..+...+...|+.++|...|.+..+.++ 
T Consensus       201 ~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  274 (334)
T d1dcea1         201 GRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW  274 (334)
T ss_dssp             CSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence            6554432  1211   122233444555666666666666554 34455556667777788888888888888877554 


Q ss_pred             --hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256          278 --ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP  312 (680)
Q Consensus       278 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (680)
                        .+|..+...|.+.|++++|++.|++..+.  .|+.
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~  309 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMR  309 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Cccc
Confidence              55666777888888888888888888764  5543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=8e-07  Score=83.77  Aligned_cols=193  Identities=10%  Similarity=-0.071  Sum_probs=80.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC
Q 037256          283 MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD  362 (680)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~  362 (680)
                      +...|.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...++.+++.. +.+...+..+..+|...|+
T Consensus        43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhh
Confidence            3334444444444444444443321 1223333344444444444444444444444332 2233444555555566666


Q ss_pred             HHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHH
Q 037256          363 LDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA----GLIDEGRKC  437 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~  437 (680)
                      +++|.+.|+......|+ ......+..++.+.+..+.+..+.......  .++...+. ++..+...    +..+.+...
T Consensus       121 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  197 (259)
T d1xnfa_         121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKAD  197 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            66666666555333332 222222233333444444444444444332  22221111 11111111    111222221


Q ss_pred             HHHhhhcCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 037256          438 FADMTKLSVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND  482 (680)
Q Consensus       438 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  482 (680)
                      +.....  ..|+ ...|..+...|...|++++|.+.|++. ...|+.
T Consensus       198 ~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         198 ATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             CCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            111111  1121 234556677777778888887777764 445544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.6e-06  Score=72.21  Aligned_cols=119  Identities=10%  Similarity=-0.009  Sum_probs=97.7

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLID  432 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~  432 (680)
                      ...+...|+++.|.+.|+++  ..++..+|..+...|...|++++|++.|++.++  +.|+. ..|..+..++.+.|+++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHH
Confidence            45577889999999999998  677888999999999999999999999999998  56665 48888888999999999


Q ss_pred             HHHHHHHHhhhc--C----------C--CcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          433 EGRKCFADMTKL--S----------V--KPE-VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       433 ~a~~~~~~m~~~--~----------~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      +|...|++....  +          .  .++ ..++..+..++.+.|++++|.+.++..
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999987653  1          1  111 245667778889999999998888765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.1e-05  Score=69.91  Aligned_cols=87  Identities=15%  Similarity=-0.067  Sum_probs=62.2

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHH
Q 037256          253 VAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR  332 (680)
Q Consensus       253 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  332 (680)
                      ...+...|+++.|.+.|+++..++...|..+...|...|++++|++.|++..+.. +-+...|..+..++...|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            3456677888888888888877787888888888888888888888888877653 334555666666666666666666


Q ss_pred             HHHHHHHH
Q 037256          333 KFHGYIIN  340 (680)
Q Consensus       333 ~i~~~~~~  340 (680)
                      ..++..+.
T Consensus        91 ~~~~kAl~   98 (192)
T d1hh8a_          91 KDLKEALI   98 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.2e-06  Score=66.76  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCC
Q 037256          387 IAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGC  465 (680)
Q Consensus       387 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  465 (680)
                      ...+.+.|++++|+..|++.++  ..|+. ..|..+..++...|++++|+..++...+.+ +.+...|..+..+|...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            3445566777777777777766  34433 356666666777777777777777766654 4456666667777777777


Q ss_pred             HHHHHHHHHhC
Q 037256          466 LYEAFDMIKQM  476 (680)
Q Consensus       466 ~~~A~~~~~~m  476 (680)
                      +++|+..+++.
T Consensus        87 ~~~A~~~~~~a   97 (117)
T d1elwa_          87 FEEAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776666553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=6.7e-06  Score=73.78  Aligned_cols=93  Identities=9%  Similarity=-0.026  Sum_probs=45.9

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256          379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMV  457 (680)
Q Consensus       379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  457 (680)
                      +...+......|.+.|++++|+..|++.++.  .|+ ...|..+..+|.+.|++++|...|+..++.. +-+...|..+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            3344444455555555555555555555552  333 2344445555555555555555555554321 12244445555


Q ss_pred             HHHHhcCCHHHHHHHHH
Q 037256          458 DMLGRAGCLYEAFDMIK  474 (680)
Q Consensus       458 ~~~~~~g~~~~A~~~~~  474 (680)
                      .+|.+.|++++|+..|+
T Consensus        80 ~~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQ   96 (201)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            55555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=4.9e-05  Score=72.55  Aligned_cols=55  Identities=11%  Similarity=0.025  Sum_probs=29.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCC------HhHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHPSERN------VSSWNVLIAGYGM--HGHGRKALEFFSQML  407 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~~~~~------~~~~~~li~~~~~--~g~~~~A~~l~~~m~  407 (680)
                      .+..+...|+++.|.+.|++.....|+      ......++.++..  .+.+++|+..|+++.
T Consensus       205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            334455667777777777766443332      1233455555544  234667776665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=3e-05  Score=74.12  Aligned_cols=91  Identities=14%  Similarity=0.037  Sum_probs=46.6

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHccCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------hH
Q 037256          214 IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDL------CIQNSIVAMYARCGNVEKARLVFDMMEKRDL--------IS  279 (680)
Q Consensus       214 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~--------~~  279 (680)
                      +..+...+...|++++|...+..+.+.......      ..+...+..+...|+++.|...|++..+-++        ..
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~  240 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHH
Confidence            444555555566666666666555544322111      1123344455666777777777777654321        22


Q ss_pred             HHHHHHHHHH--cCChhHHHHHHHHHH
Q 037256          280 WNSMLTGYIQ--NGQASEALLLFDEMQ  304 (680)
Q Consensus       280 ~~~li~~~~~--~g~~~~A~~~~~~m~  304 (680)
                      ...++.++-.  .+.+++|+..|+++.
T Consensus       241 l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         241 LKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            3445555544  234666766665443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.9e-05  Score=65.79  Aligned_cols=89  Identities=12%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLI  431 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~  431 (680)
                      ...|.+.|++++|...|++.....| +...|..+...|...|++++|+..|++.++  +.|+. ..|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCCH
Confidence            3456677777777777777644433 466677777777777777777777777776  44554 4676777777777777


Q ss_pred             HHHHHHHHHhhhc
Q 037256          432 DEGRKCFADMTKL  444 (680)
Q Consensus       432 ~~a~~~~~~m~~~  444 (680)
                      ++|...+++..+.
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.1e-05  Score=63.67  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR  462 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  462 (680)
                      ......|.+.|++++|+..|++..+  +.|+. ..|..+..+|...|++++|.+.|+.+++.. +-+...|..+..+|..
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence            3345678899999999999999999  45655 578888889999999999999999999865 5566889999999999


Q ss_pred             cCCHHHHHHHHHhC
Q 037256          463 AGCLYEAFDMIKQM  476 (680)
Q Consensus       463 ~g~~~~A~~~~~~m  476 (680)
                      .|++++|.+.+++.
T Consensus        91 ~g~~~eA~~~~~~a  104 (159)
T d1a17a_          91 LGKFRAALRDYETV  104 (159)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999998888765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.93  E-value=2.2e-05  Score=62.77  Aligned_cols=86  Identities=6%  Similarity=-0.050  Sum_probs=48.0

Q ss_pred             HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 037256          424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYL  503 (680)
Q Consensus       424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~  503 (680)
                      .+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..+++                           +
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~---------------------------a   76 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH---------------------------A   76 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------H
T ss_pred             HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccc---------------------------c
Confidence            4445555555555555555432 22345555555555555555555554443                           3


Q ss_pred             HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256          504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM  537 (680)
Q Consensus       504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  537 (680)
                      ++++|+++.++..|+.+|...|++++|.+.+++.
T Consensus        77 l~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          77 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4456666666666666666666666666666553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.7e-05  Score=69.66  Aligned_cols=63  Identities=11%  Similarity=-0.091  Sum_probs=31.4

Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256          346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE  408 (680)
Q Consensus       346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  408 (680)
                      +...|+.+..+|.+.|++++|...|++.....| ++.+|..+..+|.+.|++++|+..|++..+
T Consensus        37 ~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344444455555555555555555555544333 244455555555555555555555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00012  Score=63.26  Aligned_cols=85  Identities=7%  Similarity=-0.047  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      +|+.+..+|.+.|++++|...++..++.. +.++..|..+..+|...|++++|+..|++.                    
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a--------------------  122 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV--------------------  122 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHH--------------------
Confidence            45666777888888888888888888764 446778888888888888888888888754                    


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~  529 (680)
                             ++++|+|+.+...+..+..+.+...+
T Consensus       123 -------l~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1         123 -------LQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             -------HHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   45667676666666666655554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9.5e-05  Score=59.77  Aligned_cols=102  Identities=9%  Similarity=0.018  Sum_probs=69.7

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCH---HHHHHHHhhcCCCCCCH---hHHHHHHHHH
Q 037256          317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDL---DTAENMFNDIHPSERNV---SSWNVLIAGY  390 (680)
Q Consensus       317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~---~~A~~~f~~~~~~~~~~---~~~~~li~~~  390 (680)
                      .+++.+...+++++|++.|+..++.+ +.+..++..+..++.+.++.   ++|..+|+++....|+.   .+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45666667777777777777777765 45666777777777665444   45888888875544432   3667777888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256          391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSI  421 (680)
Q Consensus       391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  421 (680)
                      .+.|++++|++.|+++++  +.|+..-...+
T Consensus        83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l  111 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKEL  111 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence            888888888888888888  56776543333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=8.8e-05  Score=59.64  Aligned_cols=88  Identities=17%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 037256          355 DMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLID  432 (680)
Q Consensus       355 ~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~  432 (680)
                      ..+.+.|++++|...|++.....| +...|..+..+|...|++++|+..+.+..+.  .| +...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccCHH
Confidence            444555566666665555533333 3445555666666666666666666666553  23 3335555555566666666


Q ss_pred             HHHHHHHHhhhc
Q 037256          433 EGRKCFADMTKL  444 (680)
Q Consensus       433 ~a~~~~~~m~~~  444 (680)
                      +|+..|+...+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            666666655543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=0.011  Score=56.24  Aligned_cols=271  Identities=10%  Similarity=0.004  Sum_probs=140.8

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256          151 LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA  230 (680)
Q Consensus       151 Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  230 (680)
                      +.+.+.+.|.++.|..+|..+.     -|..++..+.+.+++..|++++.+.      -+..+|..+..+|........+
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH
Confidence            3444455566666666665443     2555556666666666666655433      1344555555555554444332


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 037256          231 QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSD  307 (680)
Q Consensus       231 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  307 (680)
                           .+.......+......++..|-..|..++...+++...   ..+...++-++..|++.+ .++-++.++...  +
T Consensus        89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s--~  160 (336)
T d1b89a_          89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW--S  160 (336)
T ss_dssp             -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS--T
T ss_pred             -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc--c
Confidence                 11112222334444567777777777777777777543   245566777777777754 334333333221  1


Q ss_pred             CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHH
Q 037256          308 CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLI  387 (680)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li  387 (680)
                       .   .....++..|.+.+-+                      ..++-.|.+.|++++|..+.-.-   .+++......+
T Consensus       161 -~---y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~---~~~~~~~~~f~  211 (336)
T d1b89a_         161 -R---VNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNH---PTDAWKEGQFK  211 (336)
T ss_dssp             -T---SCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHS---TTTTCCHHHHH
T ss_pred             -c---CCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHc---chhhhhHHHHH
Confidence             1   1222334444443333                      33555677777777776655332   22333334455


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-------------HHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256          388 AGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS-------------ACSHAGLIDEGRKCFADMTKLSVKPEVKHYA  454 (680)
Q Consensus       388 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-------------a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  454 (680)
                      ..+.+..+.+...++.....+.  .|+..  +.+|.             -+.+.+++.....+++.....|   +..+.+
T Consensus       212 e~~~k~~N~e~~~~~i~~yL~~--~p~~i--~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~  284 (336)
T d1b89a_         212 DIITKVANVELYYRAIQFYLEF--KPLLL--NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNE  284 (336)
T ss_dssp             HHHHHCSSTHHHHHHHHHHHHH--CGGGH--HHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred             HHHHccCChHHHHHHHHHHHHc--CHHHH--HHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHH
Confidence            6666666666666665555542  34322  33333             3344445555555555544434   346788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC
Q 037256          455 CMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       455 ~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      ++.+.|...++++.-.+.+++-
T Consensus       285 al~~lyie~~d~~~l~~~i~~~  306 (336)
T d1b89a_         285 SLNNLFITEEDYQALRTSIDAY  306 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHhCcchhHHHHHHHHHh
Confidence            8999999998877766666553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.74  E-value=8.9e-05  Score=59.05  Aligned_cols=87  Identities=8%  Similarity=-0.041  Sum_probs=47.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256          386 LIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG  464 (680)
Q Consensus       386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  464 (680)
                      +...+.+.|++++|+..|++.+.  ..|+ ...|..+..++.+.|++++|...|++..+.. +.+...|..+...|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence            34445555666666666666555  3343 3355555555556666666666665555543 333555555556666666


Q ss_pred             CHHHHHHHHHh
Q 037256          465 CLYEAFDMIKQ  475 (680)
Q Consensus       465 ~~~~A~~~~~~  475 (680)
                      +.++|++.+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            66666655553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=0.0091  Score=55.03  Aligned_cols=31  Identities=10%  Similarity=-0.079  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHhCCCccHHHHHHHHHHHcC
Q 037256          176 LVSWTVMITAYEQAEKPEEALILFQKTQQEG  206 (680)
Q Consensus       176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  206 (680)
                      +..+..|...+.+.+++++|++.|++..+.|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g   32 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK   32 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            3444555555555666666666666665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=0.0055  Score=56.61  Aligned_cols=224  Identities=11%  Similarity=-0.009  Sum_probs=114.7

Q ss_pred             HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHH
Q 037256          211 SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR----CGNVEKARLVFDMMEKR-DLISWNSMLT  285 (680)
Q Consensus       211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~  285 (680)
                      +..+..+-..+-..+++++|.+.|....+.|   +...+-.|..+|..    ..+...|...+.....+ ++..+..+..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~   78 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence            3345555555666778888888888877765   44455556666665    45677777777765543 4455555544


Q ss_pred             HHHH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256          286 GYIQ----NGQASEALLLFDEMQNSDCKPNPVTALILVSAC--TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK  359 (680)
Q Consensus       286 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k  359 (680)
                      .+..    ..+.+.|...++.....|.......+ ......  ........+...+......   .+...+..|...|..
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhcc
Confidence            4443    34567777777777665522211111 111111  1122344444444444432   234445555555554


Q ss_pred             ----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 037256          360 ----CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----  427 (680)
Q Consensus       360 ----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----  427 (680)
                          ..+...+...++... ...+..+...+...|..    ..+.++|+..|++..+.|   +...+..|...|.+    
T Consensus       155 ~~~~~~~~~~~~~~~~~a~-~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKAC-DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSS
T ss_pred             CCCcccccccchhhhhccc-cccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCC
Confidence                234445555555441 12344444444444433    345666666666665554   23333333333332    


Q ss_pred             cCCHHHHHHHHHHhhhcC
Q 037256          428 AGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       428 ~g~~~~a~~~~~~m~~~~  445 (680)
                      ..+.++|.++|++..+.|
T Consensus       231 ~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         231 TRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             SCCSTTHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHCc
Confidence            224555666665555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00011  Score=59.32  Aligned_cols=90  Identities=10%  Similarity=-0.062  Sum_probs=56.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHhhhcCCCcC-hHHHHHHHHH
Q 037256          385 VLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGL---IDEGRKCFADMTKLSVKPE-VKHYACMVDM  459 (680)
Q Consensus       385 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~  459 (680)
                      .+++.+...+++++|.+.|++....  .|+ ..++..+..++.+.++   +++|+.+|+++.+.+..|+ ...+..+..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            4555666667777777777777773  343 3466666666665443   4457777777665432333 2355667777


Q ss_pred             HHhcCCHHHHHHHHHhC
Q 037256          460 LGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       460 ~~~~g~~~~A~~~~~~m  476 (680)
                      |.+.|++++|++.|+++
T Consensus        82 y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHH
Confidence            77777777777777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.57  E-value=0.035  Score=52.59  Aligned_cols=246  Identities=9%  Similarity=0.051  Sum_probs=132.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256          250 NSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ  329 (680)
Q Consensus       250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (680)
                      ..++..|.+.++++.|.+++.+.  .+..+|..+...+.+.....-|     .+.......+......++..|...|.++
T Consensus        44 ~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e  116 (336)
T d1b89a_          44 GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFE  116 (336)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChH
Confidence            34445555555555555555433  2344555555555555443322     1222223334444455556666666666


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------HhHHHHHHHHHHhcCChHHH
Q 037256          330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------VSSWNVLIAGYGMHGHGRKA  399 (680)
Q Consensus       330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A  399 (680)
                      ....+++...... ..+..+++-++.+|++.+. ++-.+.+.... ..-|          ...|.-++-.|.+.|++++|
T Consensus       117 ~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s-~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A  193 (336)
T d1b89a_         117 ELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFW-SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  193 (336)
T ss_dssp             HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS-TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhcc-ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Confidence            6655555544321 3455556666666666532 23333333320 0111          12355666666777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 037256          400 LEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP  479 (680)
Q Consensus       400 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  479 (680)
                      ..+.   .+  ..|+..-....+..+.+.++++...++.....+.  .|+  ..+.++......-+..+..+.+++-+.-
T Consensus       194 ~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l  264 (336)
T d1b89a_         194 IITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQL  264 (336)
T ss_dssp             HHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCT
T ss_pred             HHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCc
Confidence            6543   22  2344434445566677778877777666655542  343  3466777777778888888888876432


Q ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH
Q 037256          480 PNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV  530 (680)
Q Consensus       480 p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A  530 (680)
                      |-...|              ++...  .-++...+..|..+|...++++.-
T Consensus       265 ~li~p~--------------Le~v~--~~n~~~vn~al~~lyie~~d~~~l  299 (336)
T d1b89a_         265 PLVKPY--------------LRSVQ--NHNNKSVNESLNNLFITEEDYQAL  299 (336)
T ss_dssp             TTTHHH--------------HHHHH--TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH--------------HHHHH--HcChHHHHHHHHHHHhCcchhHHH
Confidence            332222              11111  233557888999999999886543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.57  E-value=0.00032  Score=60.50  Aligned_cols=85  Identities=7%  Similarity=-0.011  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .+..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|++.|++                     
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~---------------------  136 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKK---------------------  136 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHH---------------------
Confidence            55666677778888888888888887754 45567777788888888888888777765                     


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE  529 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~  529 (680)
                            +++++|+|+.++..|..++.+.....+
T Consensus       137 ------al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         137 ------AQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------HHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                  345667776666666665544444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.49  E-value=0.00046  Score=59.36  Aligned_cols=93  Identities=9%  Similarity=0.043  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG  496 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~  496 (680)
                      .|+.+..++.+.|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|+++                    
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a--------------------  124 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV--------------------  124 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence            35556667788899999999888888764 566778888888888999999888877754                    


Q ss_pred             HHHHHHHHccCCCCCchHHHHHHHHHhcCChhH-HHHHHHHH
Q 037256          497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE-VGKLREDM  537 (680)
Q Consensus       497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m  537 (680)
                             ++++|+++.+...+..+....++..+ ..+++..|
T Consensus       125 -------l~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         125 -------LEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             -------HHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                   45666666666666666655554432 34444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.46  E-value=0.0011  Score=55.70  Aligned_cols=113  Identities=5%  Similarity=-0.108  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      ..+......+.+.|++.+|+..|.+.+..  -|.....           .-........       .....+|..+..+|
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~-------~~~~~~~~Nla~~~   77 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKK-------NIEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhh-------hHHHHHHhhHHHHH
Confidence            35566667777888888888888877762  2211100           0000000000       11224566788888


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256          461 GRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK  540 (680)
Q Consensus       461 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  540 (680)
                      .+.|++++|++.+++                           +++++|++..+|..++.+|...|++++|...+++..+.
T Consensus        78 ~~l~~~~~Al~~~~~---------------------------al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          78 NKNKDYPKAIDHASK---------------------------VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHTTCHHHHHHHHHH---------------------------HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhc---------------------------cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            899999988877654                           46789999999999999999999999999999998763

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.44  E-value=0.00083  Score=56.60  Aligned_cols=110  Identities=10%  Similarity=-0.048  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037256          348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH  427 (680)
Q Consensus       348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  427 (680)
                      ..+..-...+.+.|++++|...|.+....-+....           ............       ....+|..+..+|.+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-----------WDDQILLDKKKN-------IEISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-----------CCCHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-----------hhhHHHHHhhhh-------HHHHHHhhHHHHHHH
Confidence            34555677889999999999999987322111000           000000000000       112355666667777


Q ss_pred             cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          428 AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       428 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .|++++|++.++...+.. +.+...|..+..+|...|++++|+..|++.
T Consensus        80 l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            777777777777777654 445677777777777777777777776653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00072  Score=58.19  Aligned_cols=106  Identities=16%  Similarity=0.046  Sum_probs=70.2

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCC---CC-------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPS---ER-------------NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHI  416 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~---~~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~  416 (680)
                      ...|.+.|++++|...|++....   .+             ...+|+.+..+|.+.|++++|+..+++.++  +.| +..
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~   97 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEK   97 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--ccccchh
Confidence            34555666666666666544111   00             123566778888889999999999988888  456 445


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256          417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR  462 (680)
Q Consensus       417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  462 (680)
                      ++..+..++...|++++|...|+...+.. +-+......+..+.-+
T Consensus        98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          98 GLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            78888888889999999999999888753 2244444444444333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=9.4e-05  Score=76.47  Aligned_cols=108  Identities=7%  Similarity=-0.037  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 037256          349 LRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACS  426 (680)
Q Consensus       349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~  426 (680)
                      .+..+...+.+.|+.++|...+...  ..++ ..++..+...+...|++++|...|++..+  +.|+. .+|+.+...+.
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~a--l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             ---------------------CCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHH
Confidence            3344444444445554444444333  1111 12344444445555555555555555554  33433 24555555555


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256          427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG  461 (680)
Q Consensus       427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  461 (680)
                      ..|+..+|...|.+..... +|-...+..|...|.
T Consensus       198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            5555555555555544432 334444444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00088  Score=54.44  Aligned_cols=90  Identities=14%  Similarity=0.092  Sum_probs=48.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC-CCcC-----hHHHHHH
Q 037256          384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS-VKPE-----VKHYACM  456 (680)
Q Consensus       384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l  456 (680)
                      ..+...|.+.|++++|++.|++.++.  .|+ ...+..+..+|.+.|++++|.+.++.+++.. -.+.     ..+|..+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34445555666666666666666653  333 3455555556666666666666666655431 0011     1245555


Q ss_pred             HHHHHhcCCHHHHHHHHHh
Q 037256          457 VDMLGRAGCLYEAFDMIKQ  475 (680)
Q Consensus       457 i~~~~~~g~~~~A~~~~~~  475 (680)
                      ...+...+++++|++.+++
T Consensus        86 g~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHH
Confidence            5566666666666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00066  Score=55.23  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--------HHHHHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--------ITFTSI  421 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~l  421 (680)
                      ..+...|.+.|++++|.+.|++.....| +..+|..+..+|.+.|++++|++.++++++  +.|+.        .+|..+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence            3466778888888888888888754444 577888888889999999999999988876  23321        356667


Q ss_pred             HHHHHccCCHHHHHHHHHHhhhc
Q 037256          422 LSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       422 l~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      ...+...+++++|.+.|+.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            77778888899999988877654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.0027  Score=54.86  Aligned_cols=70  Identities=9%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh-----cCCCcChHH
Q 037256          381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTK-----LSVKPEVKH  452 (680)
Q Consensus       381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  452 (680)
                      ..+..+...+...|++++|+..++++.+  ..|. ...|..++.++...|+..+|++.|+++.+     .|+.|...+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            4577788888899999999999999988  4564 45888899999999999999999888744     388888765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.18  E-value=0.001  Score=57.15  Aligned_cols=80  Identities=10%  Similarity=0.011  Sum_probs=59.4

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256          380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD  458 (680)
Q Consensus       380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  458 (680)
                      ...|+.+..+|.+.|++++|+..+++.++  +.|+. .+|..+..++...|++++|.+.|+...+.. +.+......+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            44677778888889999999999998887  56655 478888888889999999999999888763 234445555544


Q ss_pred             HHHh
Q 037256          459 MLGR  462 (680)
Q Consensus       459 ~~~~  462 (680)
                      +..+
T Consensus       154 ~~~~  157 (169)
T d1ihga1         154 VKQK  157 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00019  Score=74.12  Aligned_cols=132  Identities=8%  Similarity=-0.064  Sum_probs=78.3

Q ss_pred             cCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256          360 CGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       360 ~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      .+.++.|...+....... ++...|..+...+.+.|+.++|...+.+...  ..| ..++..+...+...|++++|...|
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence            455666666666553333 3466788888888999999999988877655  222 246778888999999999999999


Q ss_pred             HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHHH
Q 037256          439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P-LPPNDSVWGALLLACRIH  495 (680)
Q Consensus       439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~a~~~~  495 (680)
                      ++..+.. +-+...|+.|...+...|+..+|...|.+. . ..|-..++..|...+.+.
T Consensus       176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            9999864 455679999999999999999999999886 3 346677888887666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.0012  Score=54.90  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc----------cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256          392 MHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSH----------AGLIDEGRKCFADMTKLSVKPEVKHYACMVDML  460 (680)
Q Consensus       392 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  460 (680)
                      +.+.+++|++.|+...+  +.|+.. .+..+..++..          .+.+++|+..|++.++.. +.+...|..+..+|
T Consensus         9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            34456666666666666  345443 44444444432          234567777777777654 44556676777666


Q ss_pred             HhcCCH----HHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 037256          461 GRAGCL----YEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLRED  536 (680)
Q Consensus       461 ~~~g~~----~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  536 (680)
                      ...|++    .++.+.+                    ..+...++++++++|++..++..|...       ..|.+++.+
T Consensus        86 ~~~g~~~~~~~~~~~~~--------------------~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e  138 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNF--------------------DLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAE  138 (145)
T ss_dssp             HHHHHHCCCHHHHHHHH--------------------HHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHH
T ss_pred             HHcccchhhHHHHHHhH--------------------HHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHH
Confidence            654432    2222211                    226677889999999998777666554       456666666


Q ss_pred             HHhCCC
Q 037256          537 MKNKGL  542 (680)
Q Consensus       537 m~~~g~  542 (680)
                      ..++|+
T Consensus       139 ~~k~~~  144 (145)
T d1zu2a1         139 AYKQGL  144 (145)
T ss_dssp             HHHSSS
T ss_pred             HHHHhc
Confidence            666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.0015  Score=54.34  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256          363 LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHG-----------HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL  430 (680)
Q Consensus       363 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~  430 (680)
                      +++|...|++.....| +..+|+.+..+|...|           .+++|.+.|++..+  +.|+..++..-+..+     
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~-----  129 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT-----  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH-----
Confidence            3455555555533333 3455555555554433           35677777777777  677776665555444     


Q ss_pred             HHHHHHHHHHhhhcC
Q 037256          431 IDEGRKCFADMTKLS  445 (680)
Q Consensus       431 ~~~a~~~~~~m~~~~  445 (680)
                       ..+.+++.+..+.|
T Consensus       130 -~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         130 -AKAPQLHAEAYKQG  143 (145)
T ss_dssp             -HTHHHHHHHHHHSS
T ss_pred             -HHHHHHHHHHHHHh
Confidence             33455555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0051  Score=52.99  Aligned_cols=117  Identities=10%  Similarity=0.010  Sum_probs=78.2

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLID  432 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~  432 (680)
                      .......|++++|.+.|.+.....++...        .......-+...-..+     .+. ...+..+..++...|+++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--------~~~~~~~w~~~~r~~l-----~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVL--------DDLRDFQFVEPFATAL-----VEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTT--------GGGTTSTTHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccccc--------ccCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCch
Confidence            35667788888888888877544332210        0000000011111111     111 235677888999999999


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHhH
Q 037256          433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--------PLPPNDSV  484 (680)
Q Consensus       433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~  484 (680)
                      +|...++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++        ++.|...+
T Consensus        85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999999999875 567888999999999999999999999875        56666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.86  E-value=0.004  Score=53.09  Aligned_cols=109  Identities=13%  Similarity=0.031  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCC---C--CC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 037256          353 VMDMYAKCGDLDTAENMFNDIHP---S--ER-----------NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-H  415 (680)
Q Consensus       353 li~~y~k~g~~~~A~~~f~~~~~---~--~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~  415 (680)
                      ....+.+.|++++|...|++...   .  ..           ....|+.+..+|.+.|++++|+..+++.++  +.|+ .
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~   98 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANE   98 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh--cccchH
Confidence            34555666666666666655411   0  11           123456677788889999999999999888  4454 4


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256          416 ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG  464 (680)
Q Consensus       416 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  464 (680)
                      ..|..+..++...|++++|...|+.+.+.. +.+......+-.+..+.+
T Consensus        99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            578888888999999999999999888753 334444444444443333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.72  E-value=0.00053  Score=63.66  Aligned_cols=56  Identities=18%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256          359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      +.|++++|...+++..+..| |...+..+...|+..|++++|.+.|++..+  ..|+..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~   64 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYL   64 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcH
Confidence            45666666666666644443 456666666677777777777777776666  455543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.55  E-value=0.011  Score=49.38  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=63.5

Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----
Q 037256          382 SWNVL--IAGYGMHGHGRKALEFFSQMLEEG-VKPD----------HITFTSILSACSHAGLIDEGRKCFADMTKL----  444 (680)
Q Consensus       382 ~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g-~~p~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----  444 (680)
                      +|..+  ...+.+.|++++|++.|++.++.. -.|+          ...|+.+..++...|++++|.+.+++..+.    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            45544  334556677888888887777621 0111          246777777888888888888888877642    


Q ss_pred             -CCCcC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          445 -SVKPE-----VKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       445 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                       ...++     ...+..+..+|...|++++|++.|++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             11121     234667888999999999999888775

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.23  E-value=0.0069  Score=50.80  Aligned_cols=90  Identities=14%  Similarity=-0.007  Sum_probs=65.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCC---CCC----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCH
Q 037256          354 MDMYAKCGDLDTAENMFNDIHPS---ERN----------VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----GVKPDH  415 (680)
Q Consensus       354 i~~y~k~g~~~~A~~~f~~~~~~---~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~  415 (680)
                      ...+.+.|++++|.+.|++....   .|+          ...|+.+..+|...|++++|++.+++..+.     ...++.
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44556678888888887776321   111          357888999999999999999999888752     122222


Q ss_pred             -----HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256          416 -----ITFTSILSACSHAGLIDEGRKCFADMTK  443 (680)
Q Consensus       416 -----~t~~~ll~a~~~~g~~~~a~~~~~~m~~  443 (680)
                           ..+..+..+|...|++++|.+.|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2466778899999999999999998765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.17  E-value=0.0075  Score=55.52  Aligned_cols=117  Identities=11%  Similarity=0.032  Sum_probs=50.6

Q ss_pred             cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 037256          326 GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFS  404 (680)
Q Consensus       326 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~  404 (680)
                      |++++|...++..++.. +.|...+..+...|+..|++++|.+.|+......|+ ...+..+...+...+..+++..-..
T Consensus        10 G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1          10 GQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             TCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence            34444444444444333 344555555555555555555555555555333333 2233333333322222222211111


Q ss_pred             HHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256          405 QMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL  444 (680)
Q Consensus       405 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~  444 (680)
                      .-...+ .|+ ...+......+...|+.++|.+.++++.+.
T Consensus        89 ~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          89 TAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             CEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            100101 122 223333444556667777777766666554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.019  Score=43.15  Aligned_cols=57  Identities=9%  Similarity=0.004  Sum_probs=41.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHhhhc--C---CCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256          420 SILSACSHAGLIDEGRKCFADMTKL--S---VKP-EVKHYACMVDMLGRAGCLYEAFDMIKQM  476 (680)
Q Consensus       420 ~ll~a~~~~g~~~~a~~~~~~m~~~--~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  476 (680)
                      .+...+.+.|++++|...|++..+.  .   ..+ ...++..|..+|.+.|++++|++.++++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            4556677788888888888777654  1   111 2467888899999999999998888764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.054  Score=40.53  Aligned_cols=64  Identities=20%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhcCCC-------CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256          351 NAVMDMYAKCGDLDTAENMFNDIHPS-------ERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI  416 (680)
Q Consensus       351 ~~li~~y~k~g~~~~A~~~f~~~~~~-------~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  416 (680)
                      -.+...+.+.|++++|...|++....       .++ ..+++.+..+|.+.|++++|++.+++.++  +.|+..
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~   80 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCH
Confidence            34556666677777776666654211       112 34566677777777777777777777777  556543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.20  E-value=1.4  Score=34.63  Aligned_cols=48  Identities=17%  Similarity=0.096  Sum_probs=22.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcC
Q 037256          395 HGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLS  445 (680)
Q Consensus       395 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~  445 (680)
                      +.++|+++|++..+.|   +......|-..|.+    ..+.++|.++|+...+.|
T Consensus        74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            4455555555555544   22222223223322    235566666666655554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.08  E-value=1  Score=35.51  Aligned_cols=46  Identities=11%  Similarity=-0.041  Sum_probs=21.7

Q ss_pred             CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHcc
Q 037256          191 KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNA  241 (680)
Q Consensus       191 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  241 (680)
                      ++++|++.|++..+.|..   .....+.  .....+.+++...+....+.|
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence            455666666666655421   1111121  123345555555555555444

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.07  E-value=3.1  Score=31.80  Aligned_cols=64  Identities=9%  Similarity=0.049  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC
Q 037256          279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM  343 (680)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~  343 (680)
                      ..+.-++...++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            34556677778888888888888766644 67777777777788888888877777777766664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.60  E-value=3.4  Score=31.58  Aligned_cols=84  Identities=14%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256          359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF  438 (680)
Q Consensus       359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  438 (680)
                      +|+++......+-.+   ..+..-.+.-++...++|+-++-.++++.+.+. -+|++.....+..||-+.|...++-+++
T Consensus        68 ~C~Nlk~vv~C~~~~---n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell  143 (161)
T d1wy6a1          68 KCQNLKSVVECGVIN---NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL  143 (161)
T ss_dssp             GCSCTHHHHHHHHHT---TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHh---cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence            344444444444443   223334455556666677777777777665553 4666666666777777777777777777


Q ss_pred             HHhhhcCC
Q 037256          439 ADMTKLSV  446 (680)
Q Consensus       439 ~~m~~~~~  446 (680)
                      .+.-+.|+
T Consensus       144 ~~ACe~G~  151 (161)
T d1wy6a1         144 IEACKKGE  151 (161)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhH
Confidence            77766664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.88  E-value=6.4  Score=30.06  Aligned_cols=70  Identities=10%  Similarity=-0.048  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHcc---CCHHHHHHHHHHhhhcCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 037256          413 PDHITFTSILSACSHA---GLIDEGRKCFADMTKLSVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS  483 (680)
Q Consensus       413 p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  483 (680)
                      |...|--....+..++   .++++|+.+|++..+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+ .+.|+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            3333333334444443   34567888888777643 223 244455666788888888888877765 4445443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.99  E-value=0.8  Score=35.39  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=20.2

Q ss_pred             cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256          326 GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI  373 (680)
Q Consensus       326 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~  373 (680)
                      .+.+.|..++..+.+.+.......+--|.-+|.+.|++++|.+.++.+
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344555555555544321111122233334444444444444444444