Citrus Sinensis ID: 037286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQSPSGMMMV
Secondary Structure (PSIPRED)
cccccccccccEEEcccEEEEccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccHHHHHHccccccccHHHHHHHccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEccccEEEEcccccccHHcccHHHHHHEEEEEEEEEcHHHHHHHccccEEEHHHHHHHHHHHHHHHEHHHHHHHHHHHHccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccEEEccccEEEEccccHccccccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccEEEEEEccccHHcccHHHHHHHccccccEEEEcEEEEEEcccccEEEEEEEEcccccEEEEEEEEccccEEEEcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccc
Coil and Loop (DISEMBL)
ltgiantkswfqfygdgfsirvppqfedisepedynaglslygdkakpktfaarfatpdgsevlsvvirpsnqlkitfleaqditdfgtlkdaakifvpggatlysaRTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINsgkrhldapmcpslnrrlLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISleqllqspsgmmmv
Flexible Loop (DISEMBL)
ltgiantkswfqfyGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFatpdgsevlSVVIRPSNQLKITFLEAQDITDFGTLKDAAKifvpggatlysartikikeeeGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLeqllqspsgmmmv
Low Complexity Region (SEG)
LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQSPSGMMMV
Disordered region (IsUnstruct)
*****NTKSWFQFYGDGFSIRVPPQFEDI****DYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQL**********
Disordered Region (DISOPRED)
******TKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYG**AK***************VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYS**********GFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMC************IHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQSPSGMMMV
Disordered Region (DISEMBL)
LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQ********
Disordered Region (DISPRO)
*TGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQ********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQSPSGMMMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255542546	240	conserved hypothetical protein [Ricinus	0.646	0.633	0.828	1e-71
225451044	242	PREDICTED: uncharacterized protein LOC10	0.646	0.628	0.782	1e-67
224123242	250	predicted protein [Populus trichocarpa]	0.646	0.608	0.782	2e-67
147834367	242	hypothetical protein VITISV_038348 [Viti	0.646	0.628	0.776	9e-67
449442861	249	PREDICTED: uncharacterized protein LOC10	0.663	0.626	0.746	2e-66
449482893	249	PREDICTED: uncharacterized protein LOC10	0.646	0.610	0.776	3e-66
297808777	241	hypothetical protein ARALYDRAFT_910845 [	0.638	0.622	0.766	3e-66
145358477	241	Mog1/PsbP/DUF1795-like photosystem II re	0.638	0.622	0.753	8e-65
26452557	258	unknown protein [Arabidopsis thaliana]	0.638	0.581	0.753	1e-64
449442859	265	PREDICTED: uncharacterized protein LOC10	0.663	0.588	0.679	2e-63

>gi|255542546|ref|XP_002512336.1| conserved hypothetical protein [Ricinus communis] gi|223548297|gb|EEF49788.1| conserved hypothetical protein [Ricinus communis]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 141/152 (92%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L+GIANTKSWFQFYGDGFSIRVPPQF+DI EPED+NAGLSLYGDKAKP+TFAARFA+ DG
Sbjct: 68  LSGIANTKSWFQFYGDGFSIRVPPQFQDIMEPEDFNAGLSLYGDKAKPRTFAARFASSDG 127

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVVIRPSNQLKITFLEA+DITD G+LK+AAK+FVPGG+TLYSAR IK+KEEEGF++
Sbjct: 128 SEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKVFVPGGSTLYSARAIKVKEEEGFRT 187

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           YYFYEFGR+EQHVALVAAINSGK  +     P
Sbjct: 188 YYFYEFGREEQHVALVAAINSGKAIIAGATAP 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451044|ref|XP_002284943.1| PREDICTED: uncharacterized protein LOC100249532 isoform 1 [Vitis vinifera] gi|359487717|ref|XP_003633636.1| PREDICTED: uncharacterized protein LOC100249532 isoform 2 [Vitis vinifera]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L+ IANTK+WFQF+GDGFSIRVPP+FEDI EPED+NAGLSLYGDKAKP+TFAARFA+ DG
Sbjct: 70  LSAIANTKTWFQFFGDGFSIRVPPEFEDIMEPEDFNAGLSLYGDKAKPRTFAARFASSDG 129

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVVIRP+NQLKITFLEA+DITD G+LK+AAKIFVP  ATLYSARTIKIKE++GF++
Sbjct: 130 SEVLSVVIRPTNQLKITFLEAKDITDLGSLKEAAKIFVPAAATLYSARTIKIKEDDGFRT 189

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           YYFYEFGRDEQH+A+VAA+N GK  +     P
Sbjct: 190 YYFYEFGRDEQHLAVVAAVNGGKAFIAGAAAP 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123242|ref|XP_002319030.1| predicted protein [Populus trichocarpa] gi|222857406|gb|EEE94953.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L+ +ANTKSWFQFYGDGF+IRVPPQFEDI EPEDY+AGLSLYGDKAKPKTFAARFA+ DG
Sbjct: 78  LSILANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYSAGLSLYGDKAKPKTFAARFASSDG 137

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVL+VV+RPSNQLKITFLEA+DITD G+LK+AAK+FVPGG TL+SART+KIKEEEG+++
Sbjct: 138 SEVLNVVVRPSNQLKITFLEAKDITDLGSLKEAAKLFVPGGTTLFSARTLKIKEEEGYRT 197

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           YYFYEFGRD+QH ALVA +NSGK  +     P
Sbjct: 198 YYFYEFGRDDQHAALVAVVNSGKAIIAGATAP 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834367|emb|CAN69845.1| hypothetical protein VITISV_038348 [Vitis vinifera]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 138/152 (90%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L+ IANTK+WFQF+GDGFSIRVPP+FEDI EPED++AGLSLYGDKAKP+TFAARFA+ DG
Sbjct: 70  LSAIANTKTWFQFFGDGFSIRVPPEFEDIMEPEDFDAGLSLYGDKAKPRTFAARFASSDG 129

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVVIRP+NQLKITFLEA+DITD G+LK+AAKIFVP  ATLYSARTIKIKE++GF++
Sbjct: 130 SEVLSVVIRPTNQLKITFLEAKDITDLGSLKEAAKIFVPAAATLYSARTIKIKEDDGFRT 189

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           YYFYEFGRDEQH+A+VAA+N GK  +     P
Sbjct: 190 YYFYEFGRDEQHLAVVAAVNGGKAFIAGAAAP 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442861|ref|XP_004139199.1| PREDICTED: uncharacterized protein LOC101214471 isoform 2 [Cucumis sativus]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 140/162 (86%), Gaps = 6/162 (3%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L  IANTKSWFQFYGDGFSIRVPPQFED++EPEDY+AGLSLYGDKAK KTFAARF +PDG
Sbjct: 77  LPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGDKAKTKTFAARFGSPDG 136

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVV RP+NQLKITFLEA+DITD G+L++AAKIFVPGG+TL+SART KIKE+EGF++
Sbjct: 137 SEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTLFSARTFKIKEDEGFRT 196

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGW 162
           YYFYEFG++EQHVALVA +NSG+  +     P      LS W
Sbjct: 197 YYFYEFGKNEQHVALVATVNSGQVFVAGATAP------LSKW 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482893|ref|XP_004156434.1| PREDICTED: uncharacterized protein LOC101230696 isoform 2 [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 137/152 (90%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L  IANTKSWFQFYGDGFSIRVPPQFED++EPEDY+AGLSLYGDKAK KTFAARF +PDG
Sbjct: 77  LPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGDKAKTKTFAARFGSPDG 136

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVV RP+NQLKITFLEA+DITD G+L++AAKIFVPGG+TL+SART KIKE+EGF++
Sbjct: 137 SEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTLFSARTFKIKEDEGFRT 196

Query: 121 YYFYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           YYFYEFG++EQHVALVA +NSG+  +     P
Sbjct: 197 YYFYEFGKNEQHVALVATVNSGQVFVAGATAP 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808777|ref|XP_002872272.1| hypothetical protein ARALYDRAFT_910845 [Arabidopsis lyrata subsp. lyrata] gi|297318109|gb|EFH48531.1| hypothetical protein ARALYDRAFT_910845 [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 136/150 (90%)

Query: 3   GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
           GIANTKSWFQF+GDGF+IRVPP FED++EPEDY+AGLSLYGDKAKP+TFAARF TPDGSE
Sbjct: 71  GIANTKSWFQFFGDGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSE 130

Query: 63  VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYY 122
           VLSVVIRPSNQLKITFLEA+DI+D G+LK AA++FVPG AT+YSARTIK+KEEEG ++YY
Sbjct: 131 VLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYY 190

Query: 123 FYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           FYEFGRDE+ +ALVA++N GK ++     P
Sbjct: 191 FYEFGRDEERIALVASVNRGKVYIAGAAAP 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358477|ref|NP_198091.2| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [Arabidopsis thaliana] gi|332006298|gb|AED93681.1| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 135/150 (90%)

Query: 3   GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
           GIANTKSWFQ++G GF+IRVPP FED++EPEDY+AGLSLYGDKAKP+TFAARF TPDGSE
Sbjct: 71  GIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSE 130

Query: 63  VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYY 122
           VLSVVIRPSNQLKITFLEA+DI+D G+LK AA++FVPG AT+YSARTIK+KEEEG ++YY
Sbjct: 131 VLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYY 190

Query: 123 FYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           FYEFGRDE+ +ALVA++N GK ++     P
Sbjct: 191 FYEFGRDEERIALVASVNRGKVYIAGAAAP 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452557|dbj|BAC43363.1| unknown protein [Arabidopsis thaliana]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 135/150 (90%)

Query: 3   GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
           GIANTKSWFQ++G GF+IRVPP FED++EPEDY+AGLSLYGDKAKP+TFAARF TPDGSE
Sbjct: 88  GIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSE 147

Query: 63  VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYY 122
           VLSVVIRPSNQLKITFLEA+DI+D G+LK AA++FVPG AT+YSARTIK+KEEEG ++YY
Sbjct: 148 VLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYY 207

Query: 123 FYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
           FYEFGRDE+ +ALVA++N GK ++     P
Sbjct: 208 FYEFGRDEERIALVASVNRGKVYIAGAAAP 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442859|ref|XP_004139198.1| PREDICTED: uncharacterized protein LOC101214471 isoform 1 [Cucumis sativus]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/178 (67%), Positives = 140/178 (78%), Gaps = 22/178 (12%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L  IANTKSWFQFYGDGFSIRVPPQFED++EPEDY+AGLSLYGDKAK KTFAARF +PDG
Sbjct: 77  LPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGDKAKTKTFAARFGSPDG 136

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVP----------------GGATL 104
           SEVLSVV RP+NQLKITFLEA+DITD G+L++AAKIFVP                GG+TL
Sbjct: 137 SEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPDTHLILAIDFSVLTMIGGSTL 196

Query: 105 YSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGW 162
           +SART KIKE+EGF++YYFYEFG++EQHVALVA +NSG+  +     P      LS W
Sbjct: 197 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVAGATAP------LSKW 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2146420	241	AT5G27390 [Arabidopsis thalian	0.638	0.622	0.753	9e-61

TAIR|locus:2146420 AT5G27390 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 113/150 (75%), Positives = 135/150 (90%)

Query:     3 GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
             GIANTKSWFQ++G GF+IRVPP FED++EPEDY+AGLSLYGDKAKP+TFAARF TPDGSE
Sbjct:    71 GIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSE 130

Query:    63 VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYY 122
             VLSVVIRPSNQLKITFLEA+DI+D G+LK AA++FVPG AT+YSARTIK+KEEEG ++YY
Sbjct:   131 VLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYY 190

Query:   123 FYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
             FYEFGRDE+ +ALVA++N GK ++     P
Sbjct:   191 FYEFGRDEERIALVASVNRGKVYIAGAAAP 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 22  0.38    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.24u 0.10s 19.34t   Elapsed:  00:00:02
  Total cpu time:  19.24u 0.10s 19.34t   Elapsed:  00:00:02
  Start:  Sat May 11 07:23:43 2013   End:  Sat May 11 07:23:45 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
PLN03152	241	PLN03152, PLN03152, hypothetical protein; Provisio	1e-106

>gnl|CDD|178697 PLN03152, PLN03152, hypothetical protein; Provisional

 Score =  305 bits (782), Expect = e-106
 Identities = 128/143 (89%), Positives = 138/143 (96%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           L+GIANTKSWFQFYGDGFSIRVPP FEDI EPEDYNAGLSLYGDKAKP+TFAARFA+PDG
Sbjct: 69  LSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDG 128

Query: 61  SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS 120
           SEVLSVVIRPSNQLKITFLEA+DITD G+LK+AAKIFVPGGATLYSARTIK+KEEEG ++
Sbjct: 129 SEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPGGATLYSARTIKVKEEEGIRT 188

Query: 121 YYFYEFGRDEQHVALVAAINSGK 143
           YYFYEFGRDEQHVALVA +NSGK
Sbjct: 189 YYFYEFGRDEQHVALVATVNSGK 211

Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PLN03152	241	hypothetical protein; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.97
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.96
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.94
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.94
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	97.25
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	86.64

>PLN03152 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-66  Score=454.81  Aligned_cols=167  Identities=78%  Similarity=1.204  Sum_probs=163.2

Q ss_pred             CCccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCcccccccc
Q 037286            1 LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLE   80 (235)
Q Consensus         1 ~~~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFle   80 (235)
                      |+||+||++|+||+||||+|+|||.|+|++|||||++|+++|||+|||+||+|||+++||+|||||+|+|++|||||||+
T Consensus        69 ~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle  148 (241)
T PLN03152         69 LSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLE  148 (241)
T ss_pred             heeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccCCCHHHHHhhhccCCceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEEEEccCCCCcchhhcc
Q 037286           81 AQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLS  160 (235)
Q Consensus        81 kKsItdfGSPeEva~l~vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLYtl~AqApekRW~k~k  160 (235)
                      +|||+|||+|+|||++++|+|+++++|+.++++.+.+||+||+|||.+++||+|++|||++||||||+|+++|+||+|++
T Consensus       149 ~kDLtDLGsp~EVgkv~vP~g~~~~saR~iel~~E~dGKtYY~lEy~v~~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk  228 (241)
T PLN03152        149 AKDITDLGSLKEAAKIFVPGGATLYSARTIKVKEEEGIRTYYFYEFGRDEQHVALVATVNSGKAYIAGATAPESKWDDDG  228 (241)
T ss_pred             cCChhHcCCHHHHHHhhCCCcccccccceeeeeeecCCceeEEEEEEeCCcEEEEEEEEcCCeEEEEecCCchhchHHHH
Confidence            99999999999999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             ceeeeEEe
Q 037286          161 GWLIHSVV  168 (235)
Q Consensus       161 d~L~~~~v  168 (235)
                      ++| .+++
T Consensus       229 ~kf-r~aa  235 (241)
T PLN03152        229 VKL-RSAA  235 (241)
T ss_pred             HHH-HHHH
Confidence            997 6553

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.2e-41  Score=301.33  Aligned_cols=141  Identities=21%  Similarity=0.376  Sum_probs=120.0

Q ss_pred             CccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccc
Q 037286            2 TGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEA   81 (235)
Q Consensus         2 ~~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlek   81 (235)
                      +.+.|.++|.+|.||||+|+||++|++++|.+ |||++.+|+|            ++|++|||||+|+|++        |
T Consensus        84 g~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~-~~G~dv~f~D------------~~~~~eNVSV~Ispt~--------k  142 (260)
T PLN00042         84 GKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE-FPGQVLRFED------------NFDATSNLSVMVTPTD--------K  142 (260)
T ss_pred             CCCCCCCCCeEeeCCCeEEecCCCCccccccc-cCCceEEeec------------cccccccEEEEEecCC--------c
Confidence            45789999999999999999999999999997 9999999998            8899999999999997        7


Q ss_pred             cCcccCCCHHHHHh----hh-----ccC-----C--------ceEEeeeeeeeeeccCCeeeEEEEEEe-------CceE
Q 037286           82 QDITDFGTLKDAAK----IF-----VPG-----G--------ATLYSARTIKIKEEEGFKSYYFYEFGR-------DEQH  132 (235)
Q Consensus        82 KsItdfGSPeEva~----l~-----vp~-----G--------akl~sAs~lev~~~~ggKtYY~yEfl~-------ggrH  132 (235)
                      +||+|||+||||++    ++     .++     |        ++|++|+.+    +.+||+||.|||++       ++||
T Consensus       143 ~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~r----e~dGk~YY~lE~~~~~ad~d~~~RH  218 (260)
T PLN00042        143 KSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQ----EVGGKPYYYLSVLTRTADGDEGGKH  218 (260)
T ss_pred             CCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeE----EeCCeEEEEEEEEEecCCCCCCCce
Confidence            99999999999654    22     222     1        245555555    45789999999996       4899


Q ss_pred             EEEEEEEeCCeEEEEccCCCCcchhhccceeeeEE
Q 037286          133 VALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSV  167 (235)
Q Consensus       133 ~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~  167 (235)
                      +|++|||++||||||++|+||+||+|++++++..+
T Consensus       219 ~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v  253 (260)
T PLN00042        219 QLITATVSDGKLYICKAQAGDKRWFKGARKFVEGA  253 (260)
T ss_pred             EEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHH
Confidence            99999999999999999999999999955443444

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.97  E-value=1.6e-31  Score=239.46  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             CceeEecCCCCCCCCCCccCCCcccccCCCC-CCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHH
Q 037286           16 DGFSIRVPPQFEDISEPEDYNAGLSLYGDKA-KPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAA   94 (235)
Q Consensus        16 dGF~i~vP~kwn~skE~e~f~~~~~~Y~D~a-kp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva   94 (235)
                      .||+|+||++|+++++..--.|.   |.++. .+-...+||++ +..+||||||.|+.++  |=-+.++|+|||+|+||+
T Consensus       105 ~gY~FlyP~gW~~v~Vs~~~sGn---ycqp~c~~p~~dv~F~D-~~dgnVSVIVSPV~r~--t~k~~~sIeDlGsPeeVl  178 (263)
T PLN00067        105 QPYQFILPPTWKQTRVANILSGN---YCQPKCAEPWVEVKFED-EKQGKVQVVASPLIRL--TNKPNATIEEIGSPEKLI  178 (263)
T ss_pred             ccceEeCCCCCcCccccccccCc---cccccccCCCceEEEeC-CCCCCEEEEEeccccc--ccCCCCChHHccCHHHHH
Confidence            48999999999999996411111   33322 12245777775 3355999999998532  101458999999999999


Q ss_pred             hhhcc-----CC--ceEEeeeeeeeeeccCCeeeEEEEEEe----CceEEEEEEEEeCCeEEEEccCCCCcchhhcccee
Q 037286           95 KIFVP-----GG--ATLYSARTIKIKEEEGFKSYYFYEFGR----DEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWL  163 (235)
Q Consensus        95 ~l~vp-----~G--akl~sAs~lev~~~~ggKtYY~yEfl~----ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L  163 (235)
                      +-+.+     ++  .+|++|+.++    .+||+||+||+.+    ++||+|++|||++||||||++||+|+||+|+|+.|
T Consensus       179 ~~Lg~~v~g~~~~~~eLLeAs~re----~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l  254 (263)
T PLN00067        179 ASLGPFVTGNSYDPDELLETSVEK----IGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTL  254 (263)
T ss_pred             HHhhHHhhcCCCCCcceEEeeeEe----eCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHH
Confidence            85432     22  5799998884    4689999999997    49999999999999999999999999999999998


Q ss_pred             eeEEe
Q 037286          164 IHSVV  168 (235)
Q Consensus       164 ~~~~v  168 (235)
                       ++++
T Consensus       255 -~~V~  258 (263)
T PLN00067        255 -KAIL  258 (263)
T ss_pred             -HHHH
Confidence             5543

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.96  E-value=2.6e-30  Score=212.64  Aligned_cols=133  Identities=23%  Similarity=0.370  Sum_probs=106.7

Q ss_pred             cccccceeee--ecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccc
Q 037286            4 IANTKSWFQF--YGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEA   81 (235)
Q Consensus         4 ~~Ntt~w~~y--~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlek   81 (235)
                      .+++++|.+|  .++||+|.+|++|++...    +|...+|.|            +.|..+||||+|+|+++       +
T Consensus        17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~----~G~~v~f~d------------~~~~~~nvsV~v~p~~~-------~   73 (175)
T PF01789_consen   17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDV----SGADVVFRD------------PIDADENVSVVVSPVPK-------D   73 (175)
T ss_dssp             TT--SSEEEEEECTTTEEEEEETTEEEEES----TTEEEEEEE------------TTETTSEEEEEEEE-ST-------S
T ss_pred             ccCCCCceEEEcCCCCEEEECCCCCeecCC----CCeEEEEEC------------cccccceEEEEEEecCC-------c
Confidence            4678999999  999999999999954433    444444444            55889999999999984       4


Q ss_pred             cCcccCCCHHHHHhhhc-----cCC----ceEEeeeeeeeeeccCCeeeEEEEEEe-----CceEEEEEEEEeCCeEEEE
Q 037286           82 QDITDFGTLKDAAKIFV-----PGG----ATLYSARTIKIKEEEGFKSYYFYEFGR-----DEQHVALVAAINSGKRHLD  147 (235)
Q Consensus        82 KsItdfGSPeEva~l~v-----p~G----akl~sAs~lev~~~~ggKtYY~yEfl~-----ggrH~LitAaV~~GKLYtl  147 (235)
                      ++|+|||+|+|+|+-++     +.+    +++++|+.++    .+|++||.|||..     +.||+++++||.+||||++
T Consensus        74 ~sl~~lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~----~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l  149 (175)
T PF01789_consen   74 FSLEDLGSPEEVAERLLNGELASPGSGREAELISASERE----VDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTL  149 (175)
T ss_dssp             -SGGGG-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEE----ETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEE
T ss_pred             CchhhcCCHHHHHHHHhhhhcccccCCcceEEEEeeeee----cCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEE
Confidence            49999999999998554     333    6788887773    4579999999996     3699999999999999999


Q ss_pred             ccCCCCcchhhcccee
Q 037286          148 APMCPSLNRRLLSGWL  163 (235)
Q Consensus       148 ~AqApekRW~k~kd~L  163 (235)
                      ++|+||+||.++++.|
T Consensus       150 ~~~a~e~~w~k~~~~l  165 (175)
T PF01789_consen  150 TAQAPESRWDKVEPKL  165 (175)
T ss_dssp             EEEEEHHHHHTCHHHH
T ss_pred             EEEcCHHHHHHHHHHH
Confidence            9999999999999988

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.94  E-value=1.4e-27  Score=215.53  Aligned_cols=137  Identities=17%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             ccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCc
Q 037286            7 TKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDI   84 (235)
Q Consensus         7 tt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsI   84 (235)
                      ..+|.+|.  .|||+|++|.+|.+++.    .|....|.|.+++            +|||||+|+|++.-     ..+||
T Consensus       106 ~~~l~~y~D~~DGY~FlYP~GWi~V~~----~G~DVvFrD~Ie~------------~ENVSV~ISs~sss-----~~~sL  164 (286)
T PLN00059        106 IPVFREYIDTFDGYSFKYPQNWIQVRG----AGADIFFRDPVVL------------DENLSVEFSSPSSS-----KYTSL  164 (286)
T ss_pred             CcccceeEcCCCCeEEeCCCCCeEecc----CCCceEEeccCcc------------ccceEEEEecCCcc-----cCCCh
Confidence            44577775  59999999999999983    2677888886666            99999999987610     16899


Q ss_pred             ccCCCHHHHHhhh-----cc-----CC----ceEEeeeeeeeeeccCCeeeEEEEEEe-------------C--------
Q 037286           85 TDFGTLKDAAKIF-----VP-----GG----ATLYSARTIKIKEEEGFKSYYFYEFGR-------------D--------  129 (235)
Q Consensus        85 tdfGSPeEva~l~-----vp-----~G----akl~sAs~lev~~~~ggKtYY~yEfl~-------------g--------  129 (235)
                      +|||+|+|||+.+     .|     +|    ++|++|+.++   +.+||+||.|||.+             +        
T Consensus       165 eDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re---~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w  241 (286)
T PLN00059        165 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRV---ADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEW  241 (286)
T ss_pred             HHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEE---ccCCcEEEEEEEEEEcCccccccccccccccccccc
Confidence            9999999999833     44     23    7899998885   43589999999995             1        


Q ss_pred             ceEEEEEEEEeCCeEEEEccCCCCcchhhccceeeeEEe
Q 037286          130 EQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVV  168 (235)
Q Consensus       130 grH~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~v  168 (235)
                      .||++++++|.+|||||+++|+||+||.|+|+.| +.|+
T Consensus       242 ~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f-~~V~  279 (286)
T PLN00059        242 NRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDL-RRVM  279 (286)
T ss_pred             ceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHH-HHHH
Confidence            7999999999999999999999999999999998 6554

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.94  E-value=1.9e-27  Score=213.04  Aligned_cols=133  Identities=20%  Similarity=0.311  Sum_probs=110.4

Q ss_pred             CceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHh
Q 037286           16 DGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAK   95 (235)
Q Consensus        16 dGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~   95 (235)
                      ..|+|.||++|.++..-.-=++|          ..+++||.+ +.++||||+|.|+++|..++.++++|+|||+|+||++
T Consensus       113 ~~Y~F~yP~GW~ev~VS~~d~gg----------~~vd~Rf~~-~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~  181 (262)
T PLN00066        113 TPYSFKVPQGWEEVPVSIADLGG----------TEIDLRFAS-DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVIS  181 (262)
T ss_pred             CCeEEECCCCCeEeecccccCCC----------CceEEEecc-CCCccEEEEEeccccccccccCCCChHHcCCHHHHHH
Confidence            56899999999987663200122          346889998 6889999999999988777778999999999999999


Q ss_pred             hhccC--C-----ceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEEEEccCCCCcchhhccceeeeEE
Q 037286           96 IFVPG--G-----ATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSV  167 (235)
Q Consensus        96 l~vp~--G-----akl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~  167 (235)
                      .|.|.  |     ++|++|+.+    +.+|++||.||+   .||+|++|||.+||||||++||||+||+|+++.| ..+
T Consensus       182 ~l~~~v~g~~~~e~eLl~a~~r----e~dGktYY~~E~---~rH~LasaTV~~GrLYt~~asape~rW~k~~~~l-r~v  252 (262)
T PLN00066        182 GFGPELIGEPVEEGKVLSMEVA----EHSGRTYYQFEL---PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL-KRI  252 (262)
T ss_pred             HHHHHhcCCCccccceeEeeee----ecCCcEEEEEEE---eCceEEEEEEECCEEEEEEeecchHhhHHHHHHH-HHH
Confidence            76541  2     567877665    456799999999   6999999999999999999999999999999998 444

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.00013  Score=69.44  Aligned_cols=69  Identities=25%  Similarity=0.300  Sum_probs=64.4

Q ss_pred             ccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCc
Q 037286            5 ANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDI   84 (235)
Q Consensus         5 ~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsI   84 (235)
                      -||.+|+|+.|.    +.|+||++.-+|+++..+...|++++|++..+.++.+|++          .++++|+|+..++|
T Consensus        50 l~t~~~f~~f~~----l~~~kfe~~d~p~~~~k~~~i~kek~k~~~~a~~v~~Pr~----------~ne~~i~f~~~~gI  115 (379)
T KOG4599|consen   50 LNTKEWFPSFKN----LSGAKFESGDDPDPILKRTIISKEKMKSANKAGLVIPPRK----------WNERPIHFSCTGGI  115 (379)
T ss_pred             CCChhhhhhhhc----cCcccccccCCccccccccchhhhhhccccccccccCCcc----------ccccceEEEeeccc
Confidence            489999999999    9999999999999999999999999999999999999988          77888999999999


Q ss_pred             ccC
Q 037286           85 TDF   87 (235)
Q Consensus        85 tdf   87 (235)
                      -|.
T Consensus       116 fD~  118 (379)
T KOG4599|consen  116 FDA  118 (379)
T ss_pred             ccc
Confidence            875

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=86.64  E-value=4.6  Score=31.54  Aligned_cols=69  Identities=14%  Similarity=0.014  Sum_probs=42.5

Q ss_pred             CCHHHHHhh----h--ccCCceEEeeeeeeeeeccCCeeeEEEEEEe----CceEEEEEEEEeC-CeEEEEccCCCCcch
Q 037286           88 GTLKDAAKI----F--VPGGATLYSARTIKIKEEEGFKSYYFYEFGR----DEQHVALVAAINS-GKRHLDAPMCPSLNR  156 (235)
Q Consensus        88 GSPeEva~l----~--vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~----ggrH~LitAaV~~-GKLYtl~AqApekRW  156 (235)
                      .++++++.-    +  -.+|=++.+....    ..++..-+.++|.-    ..-||..+++..+ ++++++..+++..-.
T Consensus        41 ~tl~~~~~~q~~~l~~~l~~~~~~~~~~~----~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~  116 (130)
T PF08786_consen   41 ETLEDYLQRQLAQLRKQLPGFQLVERQPI----TLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFT  116 (130)
T ss_dssp             S-HHHHHHHHHHHHHCCSTT-EEEEEEEE----EETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCH
T ss_pred             CCHHHHHHHHHHHHHhhCCCcEEEeeEEE----EeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCC
Confidence            466666641    1  2455556654433    33445555555553    3578988888888 999999999987655


Q ss_pred             hhcc
Q 037286          157 RLLS  160 (235)
Q Consensus       157 ~k~k  160 (235)
                      .+-+
T Consensus       117 ~~~~  120 (130)
T PF08786_consen  117 EEQR  120 (130)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-07
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-06
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-05

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 29/145 (20%)

Query: 9   SWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVI 68
             +    DG+    P  +  +           ++ D              +  E LSV+I
Sbjct: 15  QRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLI------------ERDENLSVII 62

Query: 69  RPSNQLKITFLEAQDITDFGTLKDAAKIFVPG-GATLYSARTIKIKE----EEGFKSYYF 123
                 K        +TD GT  D    F+          R  ++      +E  + YY 
Sbjct: 63  SEIPSDK-------TLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYT 115

Query: 124 YEF-----GRDEQHVALVAAINSGK 143
            E+        E+H       N GK
Sbjct: 116 LEYRVLVGDNVERHDLASVTTNRGK 140

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 30/158 (18%)

Query: 3   GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
                  +  + GDGF +++P ++    E  +Y   +  + D              D + 
Sbjct: 2   KPKTDTDFQTYNGDGFKLQIPSKWNPNKEV-EYPGQVLRFEDNF------------DATS 48

Query: 63  VLSVVIRPSNQLKITFLEAQD--ITDFGTL----KDAAKIFVPGGATLYSARTIKIKE-- 114
            + V I P+++  IT   + +  ++    L      + K    GG    +     + E  
Sbjct: 49  NVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETS 108

Query: 115 --EEGFKSYYFYEF-------GRDEQHVALVAAINSGK 143
             E G K YY+              +H  + A +N GK
Sbjct: 109 TAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.97
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.92
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	84.22

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.6e-36  Score=252.71  Aligned_cols=136  Identities=23%  Similarity=0.395  Sum_probs=113.1

Q ss_pred             ccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCcccccccccc
Q 037286            3 GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQ   82 (235)
Q Consensus         3 ~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekK   82 (235)
                      .+.++++|.+|.||||+|+||++|++++|.+ +|++..+|+|            +.|..+||||+|+|++        ++
T Consensus         2 ~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~-~~G~~~~f~d------------~~~~~~nvsV~v~p~~--------~~   60 (177)
T 1v2b_A            2 KPKTDTDFQTYNGDGFKLQIPSKWNPNKEVE-YPGQVLRFED------------NFDATSNVIVAITPTD--------KK   60 (177)
T ss_dssp             -----CCEEEEECSSEEEEEETTCEECCCCC-STTEEEEEEE------------TTEEEEEEEEEEEECS--------CS
T ss_pred             CCCCCCCceEEecCCEEEEcCCCCccccccc-CCCceEEEeC------------CcCCCccEEEEEeCCC--------CC
Confidence            4678999999999999999999999999997 9888777777            6688999999999997        69


Q ss_pred             CcccCCCHHHH----Hhhh-----cc-----CC--------ceEEeeeeeeeeeccCCeeeEEEEEEe-------CceEE
Q 037286           83 DITDFGTLKDA----AKIF-----VP-----GG--------ATLYSARTIKIKEEEGFKSYYFYEFGR-------DEQHV  133 (235)
Q Consensus        83 sItdfGSPeEv----a~l~-----vp-----~G--------akl~sAs~lev~~~~ggKtYY~yEfl~-------ggrH~  133 (235)
                      +|+|||+|+||    ++.+     .|     +|        ++|++|+.++    .+|++||.|||.+       ++||+
T Consensus        61 si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~----~~G~~YY~~E~~~~~~~g~e~~rH~  136 (177)
T 1v2b_A           61 SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE----VGGKQYYYLSILTRTADGNEGGKHQ  136 (177)
T ss_dssp             SGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEE----ETTEEEEEEEEEEEC-----CCEEE
T ss_pred             ChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEE----eCCeEEEEEEEEEecCCCCccccEE
Confidence            99999999996    4433     23     22        6788887774    4789999999996       38999


Q ss_pred             EEEEEEeCCeEEEEccCCCCcchhhc-ccee
Q 037286          134 ALVAAINSGKRHLDAPMCPSLNRRLL-SGWL  163 (235)
Q Consensus       134 LitAaV~~GKLYtl~AqApekRW~k~-kd~L  163 (235)
                      |++|||++||||||++||||+||++. ++.|
T Consensus       137 l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l  167 (177)
T 1v2b_A          137 LVTATVNDGKLYICKAQAGDKRWFKGAKKFV  167 (177)
T ss_dssp             EEEEEEETTEEEEEEEEEEGGGCSTTTTHHH
T ss_pred             EEEEEEECCEEEEEEEecCHHHhhhhHHHHH
Confidence            99999999999999999999999994 8877

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.97  E-value=1.3e-30  Score=209.88  Aligned_cols=134  Identities=17%  Similarity=0.299  Sum_probs=109.4

Q ss_pred             ccccccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecC-CCCceEEEEEEEeCCccccccc
Q 037286            3 GIANTKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFAT-PDGSEVLSVVIRPSNQLKITFL   79 (235)
Q Consensus         3 ~~~Ntt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~-~Dg~eNVSVvV~Pt~qlK~tFl   79 (235)
                      |++++.+|.+|.  ++||+|.||++|++...    ++|            ..+||.+ .+..+||+|+|.|+++      
T Consensus         1 ~~~~~~g~~~~~D~~~gysf~~P~~W~~~~~----~~g------------~~v~f~d~~~~~~~v~V~v~p~~~------   58 (165)
T 2xb3_A            1 GSSATSGLQAYVDSYDGYEFLYPRGWVQVQV----EDP------------VDVVFHDIIETTENVSVVVNTVAS------   58 (165)
T ss_dssp             -----CCEEEEEETTTTEEEEEETTEEEECC----CTT------------EEEEEEESSCTTSEEEEEEEECSS------
T ss_pred             CCCCCCCceEEEcCCCCEEEEcCCCCeEecC----CCC------------ceEEEECcccCCceEEEEEecCCC------
Confidence            578899999999  99999999999998543    322            3567775 4779999999999983      


Q ss_pred             cccCcccCCCHHHHHhhhc-----cCC----ceEEeeeeeeeeeccCCeeeEEEEEEe---------CceEEEEEEEEeC
Q 037286           80 EAQDITDFGTLKDAAKIFV-----PGG----ATLYSARTIKIKEEEGFKSYYFYEFGR---------DEQHVALVAAINS  141 (235)
Q Consensus        80 ekKsItdfGSPeEva~l~v-----p~G----akl~sAs~lev~~~~ggKtYY~yEfl~---------ggrH~LitAaV~~  141 (235)
                       .++|+|||+|+|+++.++     |+|    ++|++|..+    +.+|++||.|||.+         +.||++++++|.+
T Consensus        59 -~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r----~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~  133 (165)
T 2xb3_A           59 -TKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQ----KADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR  133 (165)
T ss_dssp             -CCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEE----EETTEEEEEEEEEEECC-----CCEEEEEEEEEEET
T ss_pred             -CCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeee----ecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC
Confidence             489999999999997444     343    678888776    34679999999994         4699999999999


Q ss_pred             CeEEEEccCCCCcchhhcccee
Q 037286          142 GKRHLDAPMCPSLNRRLLSGWL  163 (235)
Q Consensus       142 GKLYtl~AqApekRW~k~kd~L  163 (235)
                      ||||+|++||||+||.++++.|
T Consensus       134 g~lY~l~~sape~~w~~~~~~l  155 (165)
T 2xb3_A          134 GKVYTLSVSAPEERWPKVEDQF  155 (165)
T ss_dssp             TEEEEEEEEEEGGGHHHHHHHH
T ss_pred             CEEEEEEEecCHHHhHHHHHHH
Confidence            9999999999999999999887

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.92  E-value=3.2e-30  Score=210.49  Aligned_cols=139  Identities=22%  Similarity=0.262  Sum_probs=112.3

Q ss_pred             ccccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecC-CCCceEEEEEEEeCCccccccccc
Q 037286            5 ANTKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFAT-PDGSEVLSVVIRPSNQLKITFLEA   81 (235)
Q Consensus         5 ~Ntt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~-~Dg~eNVSVvV~Pt~qlK~tFlek   81 (235)
                      +...+|.+|.  +|||+|.||++|++..    .+++  ..|       ..++|.+ .+..+||+|+|+|+++       .
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~----~~~~--~~g-------~~v~f~d~~~~~~nvsV~v~p~~~-------~   68 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVD----VKGA--SPG-------VDVVFRDLIERDENLSVIISEIPS-------D   68 (170)
Confidence            4567899999  9999999999999753    3320  001       2455664 5889999999999983       4


Q ss_pred             cCcccCCCHHHHHhhhcc-----C----CceEEeeeeeeeeeccCCeeeEEEEEEe-----CceEEEEEEEEeCCeEEEE
Q 037286           82 QDITDFGTLKDAAKIFVP-----G----GATLYSARTIKIKEEEGFKSYYFYEFGR-----DEQHVALVAAINSGKRHLD  147 (235)
Q Consensus        82 KsItdfGSPeEva~l~vp-----~----Gakl~sAs~lev~~~~ggKtYY~yEfl~-----ggrH~LitAaV~~GKLYtl  147 (235)
                      ++|+|||+|+|+++.+++     +    .+++++|+.+    +.+|++||.|||.+     +.||++++++|++||||++
T Consensus        69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~----~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l  144 (170)
T 2lnj_A           69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEAR----DEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITF  144 (170)
Confidence            899999999999996654     2    2678888776    35679999999996     3599999999999999999


Q ss_pred             ccCCCCcchhhccceeeeEEe
Q 037286          148 APMCPSLNRRLLSGWLIHSVV  168 (235)
Q Consensus       148 ~AqApekRW~k~kd~L~~~~v  168 (235)
                      ++|+||+||.+.++.| ..++
T Consensus       145 ~~~ape~~w~~~~~~l-~~v~  164 (170)
T 2lnj_A          145 DLSTAEDRWDTVKSLF-DTVA  164 (170)
Confidence            9999999999999988 4443

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=84.22  E-value=4.2  Score=31.81  Aligned_cols=35  Identities=3%  Similarity=-0.189  Sum_probs=30.0

Q ss_pred             CceEEEEEEEEeCCeEEEEccCCCCcchhhcccee
Q 037286          129 DEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWL  163 (235)
Q Consensus       129 ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L  163 (235)
                      +..||..++.+..+++|++..++|..-|..-+..+
T Consensus        98 ~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~  132 (148)
T 1tu1_A           98 RDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAW  132 (148)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHH
T ss_pred             EEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHH
Confidence            37899999999878999999999999988776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	3e-10

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 32/149 (21%)

Query: 13  FYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATP-DGSEVLSVVIRPS 71
           + GDGF +++P ++    E E                    RF    D +  + V I P+
Sbjct: 6   YNGDGFKLQIPSKWNPNKEVEYPGQ--------------VLRFEDNFDATSNVIVAITPT 51

Query: 72  NQLKITFLEAQDIT------DFGTLKDAAKIFVPGGATLYSARTIKIKE----EEGFKSY 121
           ++  IT   + +          G    + K    GG    +     + E    E G K Y
Sbjct: 52  DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQY 111

Query: 122 YFYEF-------GRDEQHVALVAAINSGK 143
           Y+              +H  + A +N GK
Sbjct: 112 YYLSILTRTADGNEGGKHQLVTATVNDGK 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	96.42

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6e-34  Score=230.29  Aligned_cols=134  Identities=25%  Similarity=0.407  Sum_probs=108.9

Q ss_pred             cceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeec-CCCCceEEEEEEEeCCccccccccccCccc
Q 037286            8 KSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFA-TPDGSEVLSVVIRPSNQLKITFLEAQDITD   86 (235)
Q Consensus         8 t~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~-~~Dg~eNVSVvV~Pt~qlK~tFlekKsItd   86 (235)
                      |+|.||++|||+|++|++|+++.|++ .++.             .+||. +.|+.+||+|+|+|++        +++|++
T Consensus         1 ~~~~~y~~dgy~f~~P~~W~~~~~~~-~~g~-------------d~~f~d~~~~~~nv~V~v~p~~--------~~sl~~   58 (171)
T d1v2ba_           1 TDFQTYNGDGFKLQIPSKWNPNKEVE-YPGQ-------------VLRFEDNFDATSNVIVAITPTD--------KKSITD   58 (171)
T ss_dssp             CCEEEEECSSEEEEEETTCEECCCCC-STTE-------------EEEEEETTEEEEEEEEEEEECS--------CSSGGG
T ss_pred             CCcccccCCCEEEECCCCCceecccC-CCCc-------------eEEEeccccCCceEEEEEecCC--------Ccchhh
Confidence            68999999999999999999999986 6555             45555 5699999999999997        689999


Q ss_pred             CCCHHHHHhhhc--------------cCC--------ceEEeeeeeeeeeccCCeeeEEEEEEe-------CceEEEEEE
Q 037286           87 FGTLKDAAKIFV--------------PGG--------ATLYSARTIKIKEEEGFKSYYFYEFGR-------DEQHVALVA  137 (235)
Q Consensus        87 fGSPeEva~l~v--------------p~G--------akl~sAs~lev~~~~ggKtYY~yEfl~-------ggrH~LitA  137 (235)
                      ||+|+++++-+.              +.|        +++++|..+    +.+|++||.|||.+       ++||+++++
T Consensus        59 ~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~----~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~  134 (171)
T d1v2ba_          59 FGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTA----EVGGKQYYYLSILTRTADGNEGGKHQLVTA  134 (171)
T ss_dssp             GCSHHHHHHHTGGGC------------------CCCEEEEEEEEEE----EETTEEEEEEEEEEEC-----CCEEEEEEE
T ss_pred             ccChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeee----ecCCEEEEEEEEEEecCCCCCcccEEEEEE
Confidence            999999886321              111        356666555    45779999999985       379999999


Q ss_pred             EEeCCeEEEEccCCCCcchhhccceeeeEE
Q 037286          138 AINSGKRHLDAPMCPSLNRRLLSGWLIHSV  167 (235)
Q Consensus       138 aV~~GKLYtl~AqApekRW~k~kd~L~~~~  167 (235)
                      +|++||||||++|+||+||++..+.++..+
T Consensus       135 ~v~~grLYtl~~~~pe~~w~~~~~~~l~~~  164 (171)
T d1v2ba_         135 TVNDGKLYICKAQAGDKRWFKGAKKFVENT  164 (171)
T ss_dssp             EEETTEEEEEEEEEEGGGCSTTTTHHHHHH
T ss_pred             EEeCCEEEEEEEecCHHHhhhhhHHHHHHH
Confidence            999999999999999999999766543443

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.42  E-value=0.0091  Score=44.60  Aligned_cols=117  Identities=9%  Similarity=-0.003  Sum_probs=75.7

Q ss_pred             eeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHH
Q 037286           12 QFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLK   91 (235)
Q Consensus        12 ~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPe   91 (235)
                      .|.-..-+|.+|.+|.|--.                   -++++...++....|++|+...           +.+=.+++
T Consensus         5 ~Y~~~Egs~~lP~gw~d~t~-------------------ni~~~~~~~~~~~~~lvIsr~~-----------l~~~~~l~   54 (144)
T d1tu1a_           5 LYRLHEADLEIPDAWQDQSI-------------------NIFKLPASGPAREASFVISRDA-----------SQGDAPFA   54 (144)
T ss_dssp             EEECSSEEEEEETTSEECCB-------------------EEEEECCBTTBCCEEEEEEEEC-----------CCTTSCHH
T ss_pred             eeEEcCEEEeCCCCceeCcc-------------------eEEEecCCCCCcceEEEEEeec-----------CCCCCCHH
Confidence            35555568999999964321                   2445555555544455555442           23445677


Q ss_pred             HHHhh----h--ccCCceEEeeeeeeeeeccCCeeeEEEEEEe--C--ceEEEEEEEEeCCeEEEEccCCCCcchhhccc
Q 037286           92 DAAKI----F--VPGGATLYSARTIKIKEEEGFKSYYFYEFGR--D--EQHVALVAAINSGKRHLDAPMCPSLNRRLLSG  161 (235)
Q Consensus        92 Eva~l----~--vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~--g--grH~LitAaV~~GKLYtl~AqApekRW~k~kd  161 (235)
                      +++.-    +  -.+|-++.+....    ..+|..-+..|+.-  +  ..||..++...+|++|++..+++...|...+.
T Consensus        55 ~~~~~~~~~l~~~l~~~~~~~~~~~----~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~  130 (144)
T d1tu1a_          55 DYVARQLENAEKQLPGFKLHKRWDI----NIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEP  130 (144)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEEEE----EETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCcEEEeeEec----ccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHH
Confidence            77751    1  1467677664333    34567777777764  3  56999999999999999999999998877554


Q ss_pred             e
Q 037286          162 W  162 (235)
Q Consensus       162 ~  162 (235)
                      .
T Consensus       131 ~  131 (144)
T d1tu1a_         131 A  131 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3