Citrus Sinensis ID: 037287


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MDLFLKRMNEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGRSYSHNDNEPEPISQFNPLGTKVATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVAEREGVATQTDIAATVTGYSPSQVNGSHCGTEGKSWDSLSVEPGRSTSSSANVCF
cHHHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHccccccEEcccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHcccccccccccccccccccccHHcccccccccccccHHHHccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHccccccccccccccccccccccHHcccccccEEEcccccccccccccccccccccccHHHEEEEccccccEEccccccccccccccccccccccHHHHEEEEccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHcHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHEHEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccEccccccccccccc
MDLFLKRMNedaaecsfndgdilkcpflrninkptsfsfssvnfplpergakgpifedgpnfgMAFKLfhgkdgvvplsgrsyshndnepepisqfnplgtkVATIslsafspggpfsfgpfndkwkkqqkkseipnnrepssqnqnsskheasgndwletgncpiaksyravsgvlpivakafqpppglklrcppaplpAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRksvvmpkeaMALTIGASILGQVIGSRAERQRLKAVAEREgvatqtdiaatvtgyspsqvngshcgtegkswdslsvepgrstsssanvcf
MDLFLKRMNEDAaecsfndgdilKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGRSYSHNDNEPEPISQFNPLGTKVATISLSAFSPGGPFSFGPFNDKWKKQQKKseipnnrepssqnqnsskhEASGNDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVaeregvatqtdiaatvtgyspsqvngshCGTEGKSwdslsvepgrstsssanvcf
MDLFLKRMNEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGRSYSHNDNEPEPISQFNPLGTKVATISLsafspggpfsfgpfNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVAEREGVATQTDIAATVTGYSPSQVNGSHCGTEGKSWDSLSVEPGRSTSSSANVCF
*************ECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVP*************************VATISL*************************************************WLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRA****L*AV*****VATQTDIAATVT**************************************
**LF***************GDILKCPFLRNINKPTSFSFSSVNF**********IFEDGPNFGMAFKLFHGKDGVVP********************PLGTKVATISLSAFSPGGPFSFG****************************************TGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQR*************************************KSWD***************VCF
MDLFLKRMNEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGRSYSHNDNEPEPISQFNPLGTKVATISLSAFSPGGPFSFGPFNDK******************************NDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLK**********QTDIAATVTGYSPSQ********************************
*****KR*NEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGR********PEPISQFNPLGTKVATISLSAFSPGGPFSFGPFNDKW***************************SGNDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVAEREGV******AAT****************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDLFLKRMNEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGRSYSHNDNEPEPISQFNPLGTKVATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWLETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVAEREGVATQTDIAATVTGYSPSQVNGSHCGTEGKSWDSLSVEPGRSTSSSANVCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
224138372360 predicted protein [Populus trichocarpa] 0.994 0.927 0.682 1e-124
449456773358 PREDICTED: uncharacterized protein LOC10 0.988 0.927 0.636 1e-119
449527290359 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.988 0.924 0.631 1e-118
147856621381 hypothetical protein VITISV_038296 [Viti 0.976 0.860 0.609 1e-116
255557711364 conserved hypothetical protein [Ricinus 0.994 0.917 0.656 1e-116
225427518353 PREDICTED: uncharacterized protein LOC10 0.976 0.929 0.662 1e-115
357484645358 hypothetical protein MTR_5g026910 [Medic 0.994 0.932 0.594 1e-114
356531497357 PREDICTED: uncharacterized protein LOC10 0.991 0.932 0.594 1e-111
255587523350 conserved hypothetical protein [Ricinus 0.967 0.928 0.585 1e-106
388513247356 unknown [Lotus japonicus] 0.988 0.932 0.6 1e-104
>gi|224138372|ref|XP_002326586.1| predicted protein [Populus trichocarpa] gi|222833908|gb|EEE72385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/362 (68%), Positives = 276/362 (76%), Gaps = 28/362 (7%)

Query: 1   MDLFLKRMNEDAAECSFNDGDILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGP 60
           MD  L+  NED +EC F+D DI +CPFLRNINKPTSFSFS VNF  P +GAKGPIFEDGP
Sbjct: 1   MDFLLEGTNEDTSECHFDDKDIQRCPFLRNINKPTSFSFSPVNFLNPVQGAKGPIFEDGP 60

Query: 61  NFGMAFKLFHGKDGVVPLSGRSYSHNDN-EPEPISQFNPLGTKVATISLSAFSPGGPFSF 119
           NFGMAFKLFHGKDGVVPLS +S  H++  EP P  QFNPL  K ATISLSAF  GGPF F
Sbjct: 61  NFGMAFKLFHGKDGVVPLSIQSSFHDNTLEPGPAPQFNPLAAKAATISLSAFGLGGPFGF 120

Query: 120 GPFNDKWKKQQKKSEI--PNNREPSSQNQNSSKHEASGNDWLETGNCPIAKSYRAVSGVL 177
           G FNDKWK Q+KKSE    + +EPSSQ  N+SKHEA GN+WLETG+CPIAKSYRAVS VL
Sbjct: 121 GSFNDKWKNQKKKSESESASKKEPSSQQGNTSKHEAMGNEWLETGSCPIAKSYRAVSRVL 180

Query: 178 PIVAKAFQPPPGLKLRCPPA--------------------PLPAKMLVIALMGMAVNVPL 217
           P+VA   QPPP +KLRCPPA                    PLPAKMLVIAL+GMAVNVPL
Sbjct: 181 PLVASTLQPPPSMKLRCPPAIVAARAALARTALVKNLRPQPLPAKMLVIALLGMAVNVPL 240

Query: 218 GVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQR 277
           G+WKEHT KFSL WFAAVHAAVPFIAMLRKSV+MPK AMALTIGASILGQ+IGSRAER R
Sbjct: 241 GMWKEHTEKFSLQWFAAVHAAVPFIAMLRKSVLMPKTAMALTIGASILGQIIGSRAERHR 300

Query: 278 LKAVAEREGVATQTDIAATVTGYSPSQVN---GSHCGTEGKSWDSLSVEPGRSTSSSANV 334
           LK VA +E +  +T IAA V  YSPSQV+   GS+CGTE  SWD L ++   S SS++ V
Sbjct: 301 LKTVASKERLKVKTAIAAAVDRYSPSQVSGNAGSNCGTE-MSWDPLLIKASGSKSSTS-V 358

Query: 335 CF 336
           CF
Sbjct: 359 CF 360




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456773|ref|XP_004146123.1| PREDICTED: uncharacterized protein LOC101211606 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527290|ref|XP_004170645.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101211606 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147856621|emb|CAN82476.1| hypothetical protein VITISV_038296 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557711|ref|XP_002519885.1| conserved hypothetical protein [Ricinus communis] gi|223540931|gb|EEF42489.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225427518|ref|XP_002264517.1| PREDICTED: uncharacterized protein LOC100261262 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357484645|ref|XP_003612610.1| hypothetical protein MTR_5g026910 [Medicago truncatula] gi|355513945|gb|AES95568.1| hypothetical protein MTR_5g026910 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531497|ref|XP_003534314.1| PREDICTED: uncharacterized protein LOC100811917 [Glycine max] Back     alignment and taxonomy information
>gi|255587523|ref|XP_002534301.1| conserved hypothetical protein [Ricinus communis] gi|223525545|gb|EEF28083.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|388513247|gb|AFK44685.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2163563342 AT5G45410 "AT5G45410" [Arabido 0.919 0.903 0.514 3.6e-73
TAIR|locus:2117293344 AT4G25030 "AT4G25030" [Arabido 0.907 0.886 0.454 4.8e-62
UNIPROTKB|Q74FH085 GSU0639 "Uncharacterized prote 0.214 0.847 0.305 1.5e-07
TIGR_CMR|GSU_063985 GSU_0639 "hypothetical protein 0.214 0.847 0.305 1.5e-07
TAIR|locus:2163563 AT5G45410 "AT5G45410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 173/336 (51%), Positives = 208/336 (61%)

Query:    22 ILKCPFLRNINKPTSFSFSSVNFPLPERGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSGR 81
             I KCPFLRNINKPT+ SFSS++FP+P +G KGPIFEDGP F  AFKLFHGKDG+VPLSG 
Sbjct:    13 IQKCPFLRNINKPTNLSFSSLSFPIPVQGGKGPIFEDGPGFDSAFKLFHGKDGIVPLSGF 72

Query:    82 SYSHNDNEPEPISQFNPLGTKVATISLXXXXXXXXXXXXXXNDKWKKQQKKSEIPNNREP 141
             +    D       QFNPL  KVATISL              ++KWKKQQKK +   N++ 
Sbjct:    73 ADDSEDEAGRRALQFNPLAGKVATISLSAFGPGGPFGFGPFSEKWKKQQKKPKPSKNQQS 132

Query:   142 SSQNQNSSKHEA---SGNDWLETGNCPIAKSYRAVSGVL------------PIVA-KAFQ 185
                +++ +  +    +GN  +       +K    +S  L            PIVA +A  
Sbjct:   133 GDSSKHEAVGDEWLKTGNCPIAKSFRAASKVMPLISKALTLPPGMKYRCPAPIVAARAAL 192

Query:   186 PPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAML 245
                 L     P PLP KML IALMGMA NVPLGVW+EHT+KFS +WF AVHAAVPFIAML
Sbjct:   193 SKTALVKSLRPQPLPEKMLAIALMGMAANVPLGVWREHTKKFSPAWFLAVHAAVPFIAML 252

Query:   246 RKSVVMPKEAMALTIGASILGQVIGSRAERQRLKAVAEREGVATQTDIAATVTGY--SP- 302
             RKSV+MPK AMALTIGASILGQVIGSRAER RLKAVAE+        + A V+GY  SP 
Sbjct:   253 RKSVLMPKTAMALTIGASILGQVIGSRAERYRLKAVAEK-----MVPVTAMVSGYNQSPG 307

Query:   303 -SQVNGSHCGT-EGKSWDSLSVEPGRSTSSSANVCF 336
              S ++G HCG  EG      +V  G S  S+  +C+
Sbjct:   308 DSGISGGHCGIGEGVKQVYYNVNIGESAKSTG-LCY 342




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
TAIR|locus:2117293 AT4G25030 "AT4G25030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FH0 GSU0639 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0639 GSU_0639 "hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00