Citrus Sinensis ID: 037375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MTGEALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHEHHccccccccHHHHHHHccccEEEccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHEHHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
mtgealqispandphgspakeqQAAGVGILLQIMMLVLSFILGHVlrrhkfyylpeaSASLLIGLIVSALTnisntetnirySFSFNELICSVATCLLMILFSwqkpffsnfgAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGalisatdpitvLSIFQGTCALLFCLLTG
Flexible Loop (DISEMBL)
mtgealqispandphgspAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Low Complexity Region (SEG)
MTGEALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Disordered region (IsUnstruct)
************************AGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLL**
Disordered Region (DISOPRED)
************************AGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Disordered Region (DISEMBL)
**********************QAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Disordered Region (DISPRO)
****************SPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGEALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTCALLFCLLTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8RWU6	535	Sodium/hydrogen exchanger	yes	no	0.989	0.338	0.705	7e-64
Q8S396	521	Sodium/hydrogen exchanger	no	no	0.978	0.343	0.684	5e-60
Q5ZJ75	574	Sodium/hydrogen exchanger	yes	no	0.819	0.261	0.290	5e-14
Q4R8V4	542	Sodium/hydrogen exchanger	N/A	no	0.825	0.278	0.304	2e-13
Q9Y2E8	581	Sodium/hydrogen exchanger	yes	no	0.825	0.259	0.304	2e-13
Q8R4D1	576	Sodium/hydrogen exchanger	yes	no	0.825	0.262	0.298	4e-13
Q4L208	575	Sodium/hydrogen exchanger	yes	no	0.825	0.262	0.298	4e-13
O13726	567	Uncharacterized Na(+)/H(+	yes	no	0.371	0.119	0.478	2e-09
Q8IVB4	645	Sodium/hydrogen exchanger	no	no	0.360	0.102	0.405	6e-08
Q8BZ00	644	Sodium/hydrogen exchanger	no	no	0.814	0.231	0.244	8e-08

>sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3

 Score =  243 bits (619), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 155/190 (81%), Gaps = 9/190 (4%)

Query: 1   MTGEALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASA 59
           M+ E LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASA
Sbjct: 1   MSSE-LQISPAIHDPQGQ-EKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 60  SLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAI 115
           SLLIGLIV  L NISNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAI
Sbjct: 59  SLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAI 118

Query: 116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GT 173
           VTF++ GTF+ASMVTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+
Sbjct: 119 VTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGS 178

Query: 174 CALLFCLLTG 183
              L+ L+ G
Sbjct: 179 DVNLYALVFG 188

Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S396|NHX5_ARATH Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=2

 Score =  230 bits (586), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 148/187 (79%), Gaps = 8/187 (4%)

Query: 4   EALQISP-ANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLL 62
           E + ISP  +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRH+F+YLPEAS SLL
Sbjct: 2   EEVMISPVEHDPQGQ-VKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLL 60

Query: 63  IGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMIL---FSWQ-KPFFSNFGAIVTF 118
           IGLIV  L NIS+TET+IR  F+F+E    +     +I    FS Q KPFFSNFGAIVTF
Sbjct: 61  IGLIVGILANISDTETSIRTWFNFHEEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTF 120

Query: 119 AIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCAL 176
           AI GTF+AS+VTG LVYLGG M++MY+LPFVECLMFGALISATDP+TVLSIFQ  GT   
Sbjct: 121 AIIGTFVASVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDVGTDVN 180

Query: 177 LFCLLTG 183
           L+ L+ G
Sbjct: 181 LYALVFG 187

Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 20  KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
           +E+Q++G+ I   +++L +  IL H+L +++ ++LPE+ A + +G+I+ A   I   +  
Sbjct: 46  QEEQSSGMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQKL 105

Query: 80  IRYSFSFNELICSVATCLLMIL--------FSWQK-PFFSNFGAIVTFAIFGTFLASMVT 130
             +     E +       L++L        +S  K  FF N G+I  F++FGT +++ + 
Sbjct: 106 ANWK---EEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIV 162

Query: 131 GILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172
           G  +Y  G   V+Y+L   +   FG+LISA DP+  ++IF  
Sbjct: 163 GGGIYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIFNA 204

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Gallus gallus (taxid: 9031)

>sp|Q4R8V4|SL9A8_MACFA Sodium/hydrogen exchanger 8 OS=Macaca fascicularis GN=SLC9A8 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 20  KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
           +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  I   E  
Sbjct: 53  QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKI--IEFK 110

Query: 80  IRYSFSFNELICSVATCLLM---ILFS-----WQKPFFSNFGAIVTFAIFGTFLASMVTG 131
              ++   E+       LL+   I+F       +  FF N G+I  FA+FGT +++ V G
Sbjct: 111 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 170

Query: 132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172
             +Y  G   V+ +L   +   FG+LISA DP+  ++IF  
Sbjct: 171 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNA 211

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Macaca fascicularis (taxid: 9541)

>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 20  KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
           +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  I   E  
Sbjct: 53  QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKI--IEFK 110

Query: 80  IRYSFSFNELICSVATCLLM---ILFS-----WQKPFFSNFGAIVTFAIFGTFLASMVTG 131
              ++   E+       LL+   I+F       +  FF N G+I  FA+FGT +++ V G
Sbjct: 111 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 170

Query: 132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172
             +Y  G   V+ +L   +   FG+LISA DP+  ++IF  
Sbjct: 171 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNA 211

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Homo sapiens (taxid: 9606)

>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 20  KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
           +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  +   E  
Sbjct: 48  QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKV--IEFK 105

Query: 80  IRYSFSFNELICSVATCLLM---ILFS-----WQKPFFSNFGAIVTFAIFGTFLASMVTG 131
              ++   E+       LL+   I+F       +  FF N G+I  FA+FGT +++ V G
Sbjct: 106 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 165

Query: 132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172
             +Y  G   V+ +L   +   FG+LISA DP+  ++IF  
Sbjct: 166 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNA 206

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Mus musculus (taxid: 10090)

>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 20  KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
           +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  +   E  
Sbjct: 47  QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKV--IEFK 104

Query: 80  IRYSFSFNELICSVATCLLM---ILFS-----WQKPFFSNFGAIVTFAIFGTFLASMVTG 131
              ++   E+       LL+   I+F       +  FF N G+I  FA+FGT +++ V G
Sbjct: 105 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 164

Query: 132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172
             +Y  G   V+ +L   +   FG+LISA DP+  ++IF  
Sbjct: 165 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNA 205

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|O13726|YDO6_SCHPO Uncharacterized Na(+)/H(+) antiporter C15A10.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15A10.06 PE=1 SV=3

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 105 QKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVM-FVMYRLPFVECLMFGALISATDP 163
           Q  FF N G I+TFA  GTF++++  G+LVY+   + F    + FVE L  GA +SATDP
Sbjct: 114 QSNFFRNIGTILTFAFAGTFISAVTLGVLVYIFSFLNFENLSMTFVEALSMGATLSATDP 173

Query: 164 ITVLSIFQG 172
           +TVL+IF  
Sbjct: 174 VTVLAIFNS 182

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IVB4|SL9A9_HUMAN Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 8/74 (10%)

Query: 105 QKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMY-------RLPFVECLMFGAL 157
           ++ FF N G+I+T+A  GT ++ +V G+++Y G V  +++          F +CL FG+L
Sbjct: 152 KRHFFQNLGSILTYAFLGTAISCIVIGLIMY-GFVKAMIHAGQLKNGDFHFTDCLFFGSL 210

Query: 158 ISATDPITVLSIFQ 171
           +SATDP+TVL+IF 
Sbjct: 211 MSATDPVTVLAIFH 224

May act in electroneutral exchange of protons for Na(+) across membranes. Involved in the effusion of Golgi luminal H(+) in exchange for cytosolic cations. Involved in organelle ion homeostasis by contributing to the maintenance of the unique acidic pH values of the Golgi and post-Golgi compartments in the cell.

Homo sapiens (taxid: 9606)

>sp|Q8BZ00|SL9A9_MOUSE Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc9a9 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 60/209 (28%)

Query: 22  QQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIR 81
           Q    V +L    +L+L+ +   + + H+F +L E   +++ GLI+  +   +   T+I 
Sbjct: 17  QHQGAVELLAFNFLLILTILTIWLFKNHRFRFLHETGGAMVYGLIMGLILRYATAPTDID 76

Query: 82  YSFSFN--ELICSVATCLLMIL-----FSWQKP--------------------------- 107
               +N   L  S +T L+ I      + +Q+                            
Sbjct: 77  SGTVYNCGNLFFSPSTLLVNITDQVYEYKYQREINQHNISPHQGNAILEKMTFDPEIFFN 136

Query: 108 ------------------FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMY----- 144
                             FF N G+I+T+A  GT ++ +V G+++Y G V  +++     
Sbjct: 137 VLLPPIIFHAGYSLKKRHFFQNLGSILTYAFLGTAISCVVIGLIMY-GFVKAMVHAGQLK 195

Query: 145 --RLPFVECLMFGALISATDPITVLSIFQ 171
                F +CL FG+L+SATDP+TVL+IF 
Sbjct: 196 SGDFHFTDCLFFGSLMSATDPVTVLAIFH 224

May act in electroneutral exchange of protons for Na(+) across membranes. Involved in the effusion of Golgi luminal H(+) in exchange for cytosolic cations. Involved in organelle ion homeostasis by contributing to the maintenance of the unique acidic pH values of the Golgi and post-Golgi compartments in the cell.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
297842753	536	predicted protein [Arabidopsis lyrata su	0.989	0.337	0.705	2e-62
449443680	880	PREDICTED: sodium/hydrogen exchanger 6-l	0.956	0.198	0.719	2e-62
22330742	535	sodium/hydrogen exchanger 6 [Arabidopsis	0.989	0.338	0.705	3e-62
19919848	525	Na+/H+ exchanger 6 [Arabidopsis thaliana	0.989	0.344	0.705	3e-62
449492823	580	PREDICTED: sodium/hydrogen exchanger 6-l	0.994	0.313	0.701	1e-61
60932228	526	Na+/H+ antiporter [Populus tomentosa]	0.972	0.338	0.693	4e-61
356555813	529	PREDICTED: sodium/hydrogen exchanger 6-l	0.967	0.334	0.706	1e-60
356532388	544	PREDICTED: sodium/hydrogen exchanger 6-l	0.989	0.332	0.698	5e-60
260595789	533	Na+/H+ exchanger 6 [Populus euphratica]	0.972	0.333	0.671	9e-60
410094612	524	Na+/K+-H+ antiporter NHX6, partial [Bras	0.934	0.326	0.696	1e-59

>gi|297842753|ref|XP_002889258.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335099|gb|EFH65517.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 155/190 (81%), Gaps = 9/190 (4%)

Query: 1   MTGEALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASA 59
           M+ E LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASA
Sbjct: 1   MSSE-LQISPAIHDPQGQ-EKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 60  SLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAI 115
           SLLIGLIV  L NISNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAI
Sbjct: 59  SLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAI 118

Query: 116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GT 173
           VTF++ GTF+ASMVTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+
Sbjct: 119 VTFSVLGTFVASMVTGVLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGS 178

Query: 174 CALLFCLLTG 183
              L+ L+ G
Sbjct: 179 DVNLYALVFG 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443680|ref|XP_004139605.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 146/182 (80%), Gaps = 7/182 (3%)

Query: 8   ISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIV 67
           ISPA DP GSP K+QQAAGVGILLQIMMLVLSF+LGHVLRRH+ Y+LPEASASLLIGLIV
Sbjct: 66  ISPA-DPKGSPVKDQQAAGVGILLQIMMLVLSFVLGHVLRRHRLYFLPEASASLLIGLIV 124

Query: 68  SALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGAIVTFAIFGT 123
             L NISNTETNIR  F+F+E    +     +I  S      KPFFSNFGAIVTFAI GT
Sbjct: 125 GGLANISNTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAILGT 184

Query: 124 FLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCALLFCLL 181
           F+AS+VTG LVYLGG+ F+MYRLPFVECLMFGALISATDP+TVLSIFQ  GT   L+ L+
Sbjct: 185 FIASVVTGGLVYLGGLAFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALV 244

Query: 182 TG 183
            G
Sbjct: 245 FG 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330742|ref|NP_178079.2| sodium/hydrogen exchanger 6 [Arabidopsis thaliana] gi|332278234|sp|Q8RWU6.3|NHX6_ARATH RecName: Full=Sodium/hydrogen exchanger 6; AltName: Full=Na(+)/H(+) exchanger 6; Short=NHE-6 gi|20268694|gb|AAM14051.1| unknown protein [Arabidopsis thaliana] gi|22136726|gb|AAM91682.1| unknown protein [Arabidopsis thaliana] gi|332198151|gb|AEE36272.1| sodium/hydrogen exchanger 6 [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 155/190 (81%), Gaps = 9/190 (4%)

Query: 1   MTGEALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASA 59
           M+ E LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASA
Sbjct: 1   MSSE-LQISPAIHDPQGQ-EKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 60  SLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAI 115
           SLLIGLIV  L NISNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAI
Sbjct: 59  SLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAI 118

Query: 116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GT 173
           VTF++ GTF+ASMVTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+
Sbjct: 119 VTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGS 178

Query: 174 CALLFCLLTG 183
              L+ L+ G
Sbjct: 179 DVNLYALVFG 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19919848|gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 155/190 (81%), Gaps = 9/190 (4%)

Query: 1   MTGEALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASA 59
           M+ E LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASA
Sbjct: 1   MSSE-LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 60  SLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAI 115
           SLLIGLIV  L NISNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAI
Sbjct: 59  SLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAI 118

Query: 116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GT 173
           VTF++ GTF+ASMVTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+
Sbjct: 119 VTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGS 178

Query: 174 CALLFCLLTG 183
              L+ L+ G
Sbjct: 179 DVNLYALVFG 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492823|ref|XP_004159112.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/191 (70%), Positives = 150/191 (78%), Gaps = 9/191 (4%)

Query: 1   MTGEA--LQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEAS 58
           M  EA  + ISPA DP GSP K+QQAAGVGILLQIMMLVLSF+LGHVLRRH+ Y+LPEAS
Sbjct: 57  MEDEAQIMLISPA-DPKGSPVKDQQAAGVGILLQIMMLVLSFVLGHVLRRHRLYFLPEAS 115

Query: 59  ASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGA 114
           ASLLIGLIV  L NISNTETNIR  F+F+E    +     +I  S      KPFFSNFGA
Sbjct: 116 ASLLIGLIVGGLANISNTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGA 175

Query: 115 IVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--G 172
           IVTFAI GTF+AS+VTG LVYLGG+ F+MYRLPFVECLMFGALISATDP+TVLSIFQ  G
Sbjct: 176 IVTFAILGTFIASVVTGGLVYLGGLAFLMYRLPFVECLMFGALISATDPVTVLSIFQELG 235

Query: 173 TCALLFCLLTG 183
           T   L+ L+ G
Sbjct: 236 TDVNLYALVFG 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60932228|gb|AAX37333.1| Na+/H+ antiporter [Populus tomentosa]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/186 (69%), Positives = 148/186 (79%), Gaps = 8/186 (4%)

Query: 6   LQISPAN--DPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLI 63
           +QISPA   D    P KEQQAAGVGILLQIMMLVLSF+LGHVLRRH+FYYLPEASASLLI
Sbjct: 1   MQISPAGGGDSQSHPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRHRFYYLPEASASLLI 60

Query: 64  GLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGAIVTFA 119
           GLIV ALTNISNTET+IR  F+F+E    +     +I  S      KPFFSNFGAIVTF+
Sbjct: 61  GLIVGALTNISNTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFS 120

Query: 120 IFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCALL 177
           I GTF+AS+VTG+LVYLGG++++ YRLPFVECLMFGALISATDP+TVLSIFQ  G    L
Sbjct: 121 ILGTFIASVVTGVLVYLGGLIYLTYRLPFVECLMFGALISATDPVTVLSIFQELGIDTNL 180

Query: 178 FCLLTG 183
           + L+ G
Sbjct: 181 YALVFG 186

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555813|ref|XP_003546224.1| PREDICTED: sodium/hydrogen exchanger 6-like [Glycine max]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 147/184 (79%), Gaps = 7/184 (3%)

Query: 6   LQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGL 65
           L+ISPA D   +P KEQQAAGVGILLQIMMLVLSF+LGHVLRR K Y +PEASASLLIGL
Sbjct: 5   LEISPA-DARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASASLLIGL 63

Query: 66  IVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGAIVTFAIF 121
           IV  L NIS+TETNIR  F+F+E    +     +I  S      KPFFSNFGAIVTFAIF
Sbjct: 64  IVGILANISDTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIF 123

Query: 122 GTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCALLFC 179
           GTF+AS+VTGILVYLGG++F+MYRLPFVECLMFGALISATDP+TVLSIFQ  GT   L+ 
Sbjct: 124 GTFIASIVTGILVYLGGLLFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYA 183

Query: 180 LLTG 183
           L+ G
Sbjct: 184 LVFG 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532388|ref|XP_003534755.1| PREDICTED: sodium/hydrogen exchanger 6-like, partial [Glycine max]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 150/189 (79%), Gaps = 8/189 (4%)

Query: 1   MTGEALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASAS 60
           MT E L+ISPA D   +P KEQQAAGVGILLQIMMLVLSF+LGHVLRR K Y +PEASAS
Sbjct: 1   MTSE-LEISPA-DTRKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASAS 58

Query: 61  LLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGAIV 116
           LLIGLIV  L NIS+TET+IR  F+F+E    +     +I  S      KPFFSNFGAIV
Sbjct: 59  LLIGLIVGILANISDTETSIRGWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIV 118

Query: 117 TFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTC 174
           TFAIFGTF+AS+VTGILVYLGG++F+MYRLPFVECLMFGALISATDP+TVLSIFQ  GT 
Sbjct: 119 TFAIFGTFIASIVTGILVYLGGLLFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTD 178

Query: 175 ALLFCLLTG 183
             L+ L+ G
Sbjct: 179 VNLYALVFG 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260595789|gb|ACX46912.1| Na+/H+ exchanger 6 [Populus euphratica]

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 146/189 (77%), Gaps = 11/189 (5%)

Query: 6   LQISPA-----NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASAS 60
           +QISPA      D    P KEQQAAGVGILLQIMMLVLSF+LGHVLRRH+FYYLPEASAS
Sbjct: 11  MQISPAGGGGGRDSQSHPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRHRFYYLPEASAS 70

Query: 61  LLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSW----QKPFFSNFGAIV 116
           LLIGLIV AL NISNTET+IR  F+F+E    +     +I  S      KPFFSNFGAIV
Sbjct: 71  LLIGLIVGALANISNTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIV 130

Query: 117 TFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTC 174
           TFA+ G F+AS+VTG+LVYLGG++++ YRLPFVECLMFGALISATDP+TVLSIFQ  G  
Sbjct: 131 TFALLGAFIASVVTGVLVYLGGLIYLTYRLPFVECLMFGALISATDPVTVLSIFQELGID 190

Query: 175 ALLFCLLTG 183
             L+ L+ G
Sbjct: 191 TNLYALVFG 199

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410094612|gb|AFV60030.1| Na+/K+-H+ antiporter NHX6, partial [Brassica oleracea]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 146/178 (82%), Gaps = 7/178 (3%)

Query: 12  NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT 71
           +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASASLLIGLIV  L 
Sbjct: 3   HDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLA 61

Query: 72  NISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLAS 127
           N+SNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAIVTF++ GTF+AS
Sbjct: 62  NVSNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTFSVLGTFVAS 121

Query: 128 MVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCALLFCLLTG 183
           +VTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+   L+ L+ G
Sbjct: 122 IVTGVLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGSDVNLYALVFG 179

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2019853	535	NHX6 "Na+/H+ antiporter 6" [Ar	0.989	0.338	0.705	1.9e-60
TAIR|locus:2020068	521	NHX5 "sodium hydrogen exchange	0.978	0.343	0.679	9.6e-57
UNIPROTKB|F1SKE4	251	F1SKE4 "Sodium/hydrogen exchan	0.355	0.258	0.410	6.8e-17
WB|WBGene00003735	681	nhx-8 [Caenorhabditis elegans	0.989	0.265	0.284	8.6e-17
UNIPROTKB|Q5ZJ75	574	Q5ZJ75 "Sodium/hydrogen exchan	0.825	0.263	0.299	9.6e-16
UNIPROTKB|F1N9A5	586	SLC9A8 "Sodium/hydrogen exchan	0.825	0.257	0.299	1e-15
ZFIN|ZDB-GENE-041212-7	640	slc9a8 "solute carrier family	0.825	0.235	0.292	3.2e-15
UNIPROTKB|E2R7C3	581	SLC9A8 "Sodium/hydrogen exchan	0.814	0.256	0.320	3.4e-15
UNIPROTKB|Q9Y2E8	581	SLC9A8 "Sodium/hydrogen exchan	0.814	0.256	0.320	3.4e-15
UNIPROTKB|F1MWW1	585	LOC617800 "Sodium/hydrogen exc	0.814	0.254	0.320	3.5e-15

TAIR|locus:2019853 NHX6 "Na+/H+ antiporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 134/190 (70%), Positives = 155/190 (81%)

Query:     1 MTGEALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASA 59
             M+ E LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASA
Sbjct:     1 MSSE-LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query:    60 SLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAI 115
             SLLIGLIV  L NISNTET+IR  F+F++    +  +   +    FS Q KPFFSNFGAI
Sbjct:    59 SLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAI 118

Query:   116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GT 173
             VTF++ GTF+ASMVTG+LVYLGGVMF+MYRLPFVECLMFG+LISATDP+TVLSIFQ  G+
Sbjct:   119 VTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGS 178

Query:   174 CALLFCLLTG 183
                L+ L+ G
Sbjct:   179 DVNLYALVFG 188

GO:0005737 "cytoplasm" evidence=ISM

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2020068 NHX5 "sodium hydrogen exchanger 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 127/187 (67%), Positives = 148/187 (79%)

Query:     4 EALQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLL 62
             E + ISP  +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRH+F+YLPEAS SLL
Sbjct:     2 EEVMISPVEHDPQGQ-VKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLL 60

Query:    63 IGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFSWQ-KPFFSNFGAIVTF 118
             IGLIV  L NIS+TET+IR  F+F+E    +  +   +    FS Q KPFFSNFGAIVTF
Sbjct:    61 IGLIVGILANISDTETSIRTWFNFHEEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTF 120

Query:   119 AIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ--GTCAL 176
             AI GTF+AS+VTG LVYLGG M++MY+LPFVECLMFGALISATDP+TVLSIFQ  GT   
Sbjct:   121 AIIGTFVASVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDVGTDVN 180

Query:   177 LFCLLTG 183
             L+ L+ G
Sbjct:   181 LYALVFG 187

GO:0005737 "cytoplasm" evidence=ISM

GO:0006814 "sodium ion transport" evidence=IGI;ISS;RCA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IGI;ISS

GO:0005768 "endosome" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=IGI;RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|F1SKE4 F1SKE4 "Sodium/hydrogen exchanger" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
 Identities = 30/73 (41%), Positives = 49/73 (67%)

Query:   105 QKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYR-------LPFVECLMFGAL 157
             ++ FF N G+I+T+A  GT ++ ++ G+++Y G V  ++Y          F +CL FG+L
Sbjct:   152 KRHFFQNLGSILTYAFLGTAISCIIIGLIMY-GFVKAMVYADQLKNGDFHFTDCLFFGSL 210

Query:   158 ISATDPITVLSIF 170
             +SATDP+TVL+IF
Sbjct:   211 MSATDPVTVLAIF 223

GO:0016021 "integral to membrane" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

WB|WBGene00003735 nhx-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 217 (81.4 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 54/190 (28%), Positives = 106/190 (55%)

Query:     3 GEALQISPAN-DPHGSP----AKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEA 57
             GEA+  +  + + HG+       E++   + I   + +++L+ ++ H+L   K +++PE+
Sbjct:    81 GEAIDANATSLEQHGAAIVGNVSEEKKRSLAIFFILFVIMLATLVVHMLIVSKIHWMPES 140

Query:    58 SASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI-LFSWQKP-FFSNFGAI 115
              A + +G ++ ++ + S  + +   + S +     +   ++    ++  K  FFSNF  I
Sbjct:   141 LAIVALGALIGSILSYSRRDWSEIEALSPDVFFLVLLPPIIFENAYNLNKGYFFSNFVPI 200

Query:   116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC- 174
             +TFAIFGT +++MV G  +Y+ G + +++   F EC  F A+ISA DP+  L+IFQ    
Sbjct:   201 LTFAIFGTTISAMVIGAGLYILGAIGLIFEFTFFECFAFAAMISAVDPVGTLAIFQAVKV 260

Query:   175 -ALLFCLLTG 183
              +LL+ L+ G
Sbjct:   261 ESLLYMLVFG 270

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 9.6e-16, P = 9.6e-16
 Identities = 47/157 (29%), Positives = 88/157 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTE-- 77
             +E+Q++G+ I   +++L +  IL H+L +++ ++LPE+ A + +G+I+ A   I   +  
Sbjct:    46 QEEQSSGMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQKL 105

Query:    78 TNIRYSFSFNELICSVATCLLMIL---FSWQKP-FFSNFGAIVTFAIFGTFLASMVTGIL 133
              N +    F   +  +     +I    +S  K  FF N G+I  F++FGT +++ + G  
Sbjct:   106 ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIVGGG 165

Query:   134 VYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
             +Y  G   V+Y+L   +   FG+LISA DP+  ++IF
Sbjct:   166 IYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIF 202

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1N9A5 SLC9A8 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 47/157 (29%), Positives = 88/157 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTE-- 77
             +E+Q++G+ I   +++L +  IL H+L +++ ++LPE+ A + +G+I+ A   I   +  
Sbjct:    46 QEEQSSGMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQKL 105

Query:    78 TNIRYSFSFNELICSVATCLLMIL---FSWQKP-FFSNFGAIVTFAIFGTFLASMVTGIL 133
              N +    F   +  +     +I    +S  K  FF N G+I  F++FGT +++ + G  
Sbjct:   106 ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIVGGG 165

Query:   134 VYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
             +Y  G   V+Y+L   +   FG+LISA DP+  ++IF
Sbjct:   166 IYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIF 202

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0051453 "regulation of intracellular pH" evidence=IEA

ZFIN|ZDB-GENE-041212-7 slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 46/157 (29%), Positives = 88/157 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTE-- 77
             +E+Q++G+ I   ++++ +  IL H+L + K ++LPE+ A + +G+++ A   I  ++  
Sbjct:   112 EEEQSSGMTIFFSLLVIGICIILVHLLIKFKLHFLPESVAVVSLGILMGAFIKIIESQQL 171

Query:    78 TNIRYSFSFNELICSVATCLLMIL---FSWQKP-FFSNFGAIVTFAIFGTFLASMVTGIL 133
              N +    F   +  +     +I    +S  K  FF N G+I  FA+FGT +++ + G  
Sbjct:   172 ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFIVGGG 231

Query:   134 VYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
             +Y  G   V+Y++   +   FG+LISA DP+  ++IF
Sbjct:   232 IYFLGQADVIYKMTMTDSFAFGSLISAVDPVATIAIF 268

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 51/159 (32%), Positives = 90/159 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
             +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  I   E  
Sbjct:    53 QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKI--IEFK 110

Query:    80 IRYSFSFNELICSVATCLLM---ILF----SWQKP-FFSNFGAIVTFAIFGTFLASMVTG 131
                ++   E+       LL+   I+F    S  K  FF N G+I  FA+FGT +++ V G
Sbjct:   111 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 170

Query:   132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
               +Y  G   V+ +L   +   FG+LISA DP+  ++IF
Sbjct:   171 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIF 209

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Y2E8 SLC9A8 "Sodium/hydrogen exchanger 8" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 51/159 (32%), Positives = 90/159 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
             +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  I   E  
Sbjct:    53 QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKI--IEFK 110

Query:    80 IRYSFSFNELICSVATCLLM---ILF----SWQKP-FFSNFGAIVTFAIFGTFLASMVTG 131
                ++   E+       LL+   I+F    S  K  FF N G+I  FA+FGT +++ V G
Sbjct:   111 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 170

Query:   132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
               +Y  G   V+ +L   +   FG+LISA DP+  ++IF
Sbjct:   171 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIF 209

GO:0016021 "integral to membrane" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1MWW1 LOC617800 "Sodium/hydrogen exchanger" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 51/159 (32%), Positives = 90/159 (56%)

Query:    20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETN 79
             +E+Q++G+ I   +++L +  IL H+L R++ ++LPE+ A + +G+++ A+  I   E  
Sbjct:    56 QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKI--IEFK 113

Query:    80 IRYSFSFNELICSVATCLLM---ILF----SWQKP-FFSNFGAIVTFAIFGTFLASMVTG 131
                ++   E+       LL+   I+F    S  K  FF N G+I  FA+FGT +++ V G
Sbjct:   114 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG 173

Query:   132 ILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIF 170
               +Y  G   V+ +L   +   FG+LISA DP+  ++IF
Sbjct:   174 GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIF 212

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWU6	NHX6_ARATH	No assigned EC number	0.7052	0.9890	0.3383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NHX6	sodium proton exchanger, putative (NHX6); sodium proton exchanger, putative (NHX6); FUNCTIONS IN- solute-hydrogen antiporter activity, sodium-hydrogen antiporter activity; INVOLVED IN- cation transport, sodium ion transport, regulation of pH; LOCATED IN- integral to membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Na+/H+ exchanger, subfamily (InterPro-IPR004709), Cation/H+ exchanger, conserved region (InterPro-IPR018422), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro-IPR018409), Cation/H+ exchanger (InterPro-IPR0 [...] (535 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G04990	sad1/unc-84 protein-related; sad1/unc-84 protein-related; FUNCTIONS IN- molecular_function unkn [...] (471 aa)				•	•				0.836
	AT1G76170	ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- tRNA processing; LOCATED IN- [...] (332 aa)							•		0.790
	UBQ4	UBQ4; protein binding; encodes a ubiquitin polyprotein. ; Protein modifier which can be covalen [...] (382 aa)					•				0.746
	ATCHX20	ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation-proton antiporter/ sodium-hydrogen antiport [...] (842 aa)							•		0.677
	AT2G44270	ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- tRNA processing; EXPRESSED IN [...] (355 aa)							•		0.659
	ATCNGC14	ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel; member of Cyclic nucleo [...] (726 aa)							•		0.659
	AT5G63700	zinc finger (C3HC4 type RING finger) family protein; zinc finger (C3HC4 type RING finger) famil [...] (571 aa)							•		0.565
	KEA3	KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter; member of Putativ [...] (637 aa)							•		0.562
	ATRABG3A	Ras-related GTP-binding protein, putative; ATRABG3A; FUNCTIONS IN- protein binding, GTP binding [...] (217 aa)							•		0.534
	CNGC19	ATCNGC19; calmodulin binding / cyclic nucleotide binding / ion channel; member of Cyclic nucleo [...] (729 aa)							•		0.534

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	2e-10
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	3e-06
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	0.001

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 54  LPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFSNFG 113
           +PE+   ++ GL+V  +   S          S+  L       L    F  Q+ FF N G
Sbjct: 35  VPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLG 94

Query: 114 AIVTFAIFGTFLASMVTGILVYLGGVMFVM--YRLPFVECLMFGALISATDPITVLSIFQ 171
           +I+ FA+ GT + + V G+ +Y   ++       +  ++ L+FG+LISA DP+ VL++F+
Sbjct: 95  SILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFE 154

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 108 FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVL 167
               + +I+  A+    + ++  G+L +      ++  +P     + GA++S TDP+ V 
Sbjct: 83  LRRVWRSILVLALPLVLITALGIGLLAHW-----LLPGIPLAAAFLLGAILSPTDPVAVS 137

Query: 168 SIF 170
            IF
Sbjct: 138 PIF 140

Length = 429

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 17/142 (11%)

Query: 33  IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICS 92
           +++L+L+ + G + RR     LP     +L G++      +  +   +       E++  
Sbjct: 2   VLLLLLALLAGLLARR---LGLPPVVGLILAGIL------LGPSGLGLVEPDLDLEVLAE 52

Query: 93  VATCLLMILFSW---QKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFV 149
           +   LL+ L       +    N  +I+  A+ G  +  ++  +L  LGG       +P +
Sbjct: 53  LGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGG-----LGIPLL 107

Query: 150 ECLMFGALISATDPITVLSIFQ 171
           E L+FGA +SAT P+ VL+I +
Sbjct: 108 EALLFGAALSATSPVVVLAILK 129

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	99.96
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.94
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.77
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.74
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.45
PRK05326	562	potassium/proton antiporter; Reviewed	99.4
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.29
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	98.87
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	98.65
PRK03659	601	glutathione-regulated potassium-efflux system prot	98.19
PRK03562	621	glutathione-regulated potassium-efflux system prot	98.15
PRK10669	558	putative cation:proton antiport protein; Provision	97.98
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	97.97
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	97.89
PLN03159	832	cation/H(+) antiporter 15; Provisional	97.09
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.66
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.82
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	90.81
PRK04125	141	murein hydrolase regulator LrgA; Provisional	89.69
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	88.79
PRK10669	558	putative cation:proton antiport protein; Provision	88.31
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	87.94
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.44
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	86.43
PLN03159	832	cation/H(+) antiporter 15; Provisional	86.39
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	85.74
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	85.58
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	85.21
PRK04288	232	antiholin-like protein LrgB; Provisional	83.95
COG2855	334	Predicted membrane protein [Function unknown]	83.86
PRK01658	122	holin-like protein; Validated	83.56
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	82.07
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	80.09

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-35  Score=266.84  Aligned_cols=176  Identities=39%  Similarity=0.688  Sum_probs=158.1

Q ss_pred             ccCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccccccccccc--cccc
Q 037375            7 QISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNI--RYSF   84 (183)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~--~~~~   84 (183)
                      +++++-+-+++++++||++++++++++++++++++.+|+++++|++++||+++.+++|+++|.+.++......-  .+..
T Consensus        15 ~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~   94 (575)
T KOG1965|consen   15 EIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRIL   94 (575)
T ss_pred             hhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeE
Confidence            44544445588999999999999999999999999999999999999999999999999999998876543321  1234


Q ss_pred             ccchhHHHHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhcc
Q 037375           85 SFNELICSVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALIS  159 (183)
Q Consensus        85 ~~~~~~f~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiS  159 (183)
                      .|+|+.|+.++ +||+    ||+++ +.|+||+++|+.+|++||.||+.++|...|+.+......+++|.+|++|||++|
T Consensus        95 ~f~~~~ff~vL-LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliS  173 (575)
T KOG1965|consen   95 VFSPDLFFLVL-LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALIS  173 (575)
T ss_pred             EecccHHHHHh-hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhc
Confidence            78999999999 9998    99999 999999999999999999999999999999987655678999999999999999


Q ss_pred             CccHHHHHHHHhhcC--cccceeccC
Q 037375          160 ATDPITVLSIFQGTC--ALLFCLLTG  183 (183)
Q Consensus       160 aTDPVAVlai~~~l~--a~l~~lvfg  183 (183)
                      |||||+|+|||+|++  ++||.||||
T Consensus       174 ATDPVtvLaIfnel~vd~~Ly~LVFG  199 (575)
T KOG1965|consen  174 ATDPVTVLAIFNELGVDPKLYTLVFG  199 (575)
T ss_pred             ccCchHHHHHHHHhCCCcceeeeeec
Confidence            999999999999998  699999998

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.9e-29  Score=228.92  Aligned_cols=157  Identities=26%  Similarity=0.427  Sum_probs=139.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH
Q 037375           21 EQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI  100 (183)
Q Consensus        21 ~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i  100 (183)
                      +|-.....+.+|+++..++++..|..+ +-...+|||++++++|+++|.+.+.....+    ...+++++||+++ ||||
T Consensus        36 ~~V~~p~vi~lwil~asLaKi~fh~~~-~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~----~~~L~s~vFFlyL-LPPI  109 (670)
T KOG1966|consen   36 EHVHIPYVITLWILVASLAKIVFHLMP-KLRKIVPESCLLIILGLVLGGIIKALATIA----PFFLESDVFFLYL-LPPI  109 (670)
T ss_pred             hhccCchhhHHHHHHHHHHHhcccccc-cccccCchhHHHHHHHHHHHHHHHhhhccc----cccccccchhhhh-cCHH
Confidence            566678899999999999999999863 333669999999999999999887665422    3577899999999 9999


Q ss_pred             ----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          101 ----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMF-VMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       101 ----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~-~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                          ||.++ |.|++|+++|+++|++||+++++.+|..+|.+++.+ ...+.++.+-++|||++||+|||||+|+|+|+|
T Consensus       110 vlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih  189 (670)
T KOG1966|consen  110 VLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH  189 (670)
T ss_pred             HhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc
Confidence                99999 999999999999999999999999999999987754 233588999999999999999999999999996


Q ss_pred             --cccceeccC
Q 037375          175 --ALLFCLLTG  183 (183)
Q Consensus       175 --a~l~~lvfg  183 (183)
                        +.||++|||
T Consensus       190 VNe~LfI~VFG  200 (670)
T KOG1966|consen  190 VNEVLFIIVFG  200 (670)
T ss_pred             cccEEEeeeeh
Confidence              899999998

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.94  E-value=1.4e-26  Score=213.16  Aligned_cols=157  Identities=25%  Similarity=0.405  Sum_probs=135.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH
Q 037375           21 EQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI  100 (183)
Q Consensus        21 ~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i  100 (183)
                      ||-+....+.+|+++.+++++..|+. +++.+++|++++++++|+++|.+......    .+..+++|++|+.++ ||||
T Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~lP~s~llil~GlllG~i~~~~~~----~~~~~l~~~lf~~~~-LPpI   76 (559)
T TIGR00840         3 EHVQSPYEFILWILLASLAKIGFHLT-HKVIRAVPESVLLIVYGLLVGGIIKASPH----IDPPTLDSSYFFLYL-LPPI   76 (559)
T ss_pred             chhhchHHHHHHHHHHHHHHHHHHHH-HhhcccCCHHHHHHHHHHHHHHHHHcCCC----CccCCcCHHHHHHHH-HHHH
Confidence            45566788999999999999988875 56678899999999999999987544322    124578999999999 9998


Q ss_pred             ----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccCCHHHHHHhhhhccCccHHHHHHHHhhc
Q 037375          101 ----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFV--MYRLPFVECLMFGALISATDPITVLSIFQGT  173 (183)
Q Consensus       101 ----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~--~~~~~l~~allfGAiiSaTDPVAVlai~~~l  173 (183)
                          ||+++ |.||+|+++|+.+|++||++|++++|..+|++.....  ..++||.+|++|||++||||||||++++|+.
T Consensus        77 lFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~  156 (559)
T TIGR00840        77 VLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEY  156 (559)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhc
Confidence                99999 9999999999999999999999999999998754211  2367999999999999999999999999998


Q ss_pred             C--cccceeccC
Q 037375          174 C--ALLFCLLTG  183 (183)
Q Consensus       174 ~--a~l~~lvfg  183 (183)
                      +  ++++.++||
T Consensus       157 ~v~~~L~~ll~g  168 (559)
T TIGR00840       157 HVNEKLYIIIFG  168 (559)
T ss_pred             CCCcchhhheeh
Confidence            7  799999987

This model is specific for the eukaryotic members members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.77  E-value=4e-18  Score=156.30  Aligned_cols=131  Identities=22%  Similarity=0.336  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH----HHhhc-hhHH
Q 037375           35 MLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI----LFSWQ-KPFF  109 (183)
Q Consensus        35 ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i----g~~l~-~~f~  109 (183)
                      ++..+.....+.+  | .++|++.++++.|+++|......        .+++||++++.++ +||+    |++++ +.+|
T Consensus         6 l~~~~~~~~~l~~--r-~~lP~~v~lil~Gi~lg~~~~~~--------~~~~~~~~~~~~~-Lp~lLF~~g~~~~~~~l~   73 (525)
T TIGR00831         6 LVMLATAVAVTVK--F-IRLPYPIALILAGLLLGLAGLLP--------EVPLDREIVLFLF-LPPLLFEAAMNTDLRELR   73 (525)
T ss_pred             HHHHHHHHHHHhc--c-cCCCHHHHHHHHHHHHHhccccC--------CCCCCHHHHHHHH-HHHHHHHHHhcCCHHHHH
Confidence            3333444445432  2 58999999999999999754321        3468899888777 8988    99999 9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC--cccceeccC
Q 037375          110 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC--ALLFCLLTG  183 (183)
Q Consensus       110 ~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~--a~l~~lvfg  183 (183)
                      ||+++++.+|++|+++++..+|...|++      .++||..|+++||++|||||++|.+++|+.+  +++..++.|
T Consensus        74 ~~~~~i~~la~~~vlit~~~v~~~~~~~------~~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~g  143 (525)
T TIGR00831        74 ENFRPIALIAFLLVVVTTVVVGFSLNWI------LGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEG  143 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhh
Confidence            9999999999999999999999999875      4799999999999999999999999999876  466665544

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.1e-17  Score=147.22  Aligned_cols=142  Identities=20%  Similarity=0.352  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHH----
Q 037375           26 GVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMI----  100 (183)
Q Consensus        26 ~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~i----  100 (183)
                      .+.++...+++.++...+++.++   ..+|+....++.|++.|... ...+      ....++++.+..++ +||+    
T Consensus         5 ~~~~~~~~lil~l~~~~~~~~~~---l~~~~i~~~ll~g~i~g~~~l~~~~------~~~~~~~el~~~l~-l~ilLf~~   74 (429)
T COG0025           5 LMLLFLLLLILLLGLLVSVLAGR---LLLPEIPLLLLLGLLGGPPGLNLIS------PDLELDPELFLVLF-LAILLFAG   74 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHhhhhhcccc------ccccCChHHHHHHH-HHHHHHHh
Confidence            45566666677777777787644   35677777777777777432 2221      13467888888777 8887    


Q ss_pred             HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC--ccc
Q 037375          101 LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC--ALL  177 (183)
Q Consensus       101 g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~--a~l  177 (183)
                      |++++ +++||++++|..+++.++++|++++|...|++.     +++||..|+++||++||||||++.+++|+.+  +++
T Consensus        75 g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~-----~~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri  149 (429)
T COG0025          75 GLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLL-----PGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRI  149 (429)
T ss_pred             HhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHH
Confidence            89999 999999999999999999999999999999973     4899999999999999999999999999876  566


Q ss_pred             ceecc
Q 037375          178 FCLLT  182 (183)
Q Consensus       178 ~~lvf  182 (183)
                      -+++.
T Consensus       150 ~~iL~  154 (429)
T COG0025         150 RTILE  154 (429)
T ss_pred             HHHHH
Confidence            55544

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.45  E-value=2.4e-12  Score=122.21  Aligned_cols=133  Identities=19%  Similarity=0.275  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccc-ccccccccccccccchh----HHHHHHHHHHH-
Q 037375           27 VGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTN-ISNTETNIRYSFSFNEL----ICSVATCLLMI-  100 (183)
Q Consensus        27 ~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~-~~~~~~~~~~~~~~~~~----~f~~~l~LP~i-  100 (183)
                      ....++..++++..+.+.++|++  .++|++.++++.|+++|.... ..+..    + ...++.    +.-+.++.-++ 
T Consensus        13 l~~~~lG~~lll~~l~s~~lkeR--l~Ls~~~v~Ll~GiilGP~~l~~idP~----~-~g~~d~i~leIteIvL~I~LFa   85 (810)
T TIGR00844        13 VAYSCVGIFSSIFSLVSLFVKEK--LYIGESMVASIFGLIVGPHCLNWFNPL----S-WGNTDSITLEISRILLCLQVFA   85 (810)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHhhhhhhccCChh----h-cccchHHHHHHHHHHHHHHHHH
Confidence            34444455555555667666533  689999999999999997532 22210    0 011111    21122211222 


Q ss_pred             -HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHh
Q 037375          101 -LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ  171 (183)
Q Consensus       101 -g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~  171 (183)
                       |.+++ +.++++|.++..++++++.++.++++...|++     ..+++|..|+++||+++|||||++.++++
T Consensus        86 ~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~L-----i~GL~~~~ALLLGAILAPTDPVLAssV~k  153 (810)
T TIGR00844        86 VSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWIL-----VPGLNFPASLLMGACITATDPVLAQSVVS  153 (810)
T ss_pred             HHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHhhhcCCcHHHHHHHHh
Confidence             89999 99999999999999999999999999999986     35899999999999999999999999998

This model is specific for the fungal members of this family.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=99.40  E-value=6e-12  Score=116.30  Aligned_cols=127  Identities=22%  Similarity=0.409  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccch----hHHHHHHHHHHH----
Q 037375           29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNE----LICSVATCLLMI----  100 (183)
Q Consensus        29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~----~~f~~~l~LP~i----  100 (183)
                      ++...++++++.+.+.+.+|   .++|...+.++.|+++|.-...         .+++++    +.+.-+ +++++    
T Consensus         8 ll~~~~ll~l~~~~~~l~~r---~~~P~ll~~il~GillGp~~lg---------~i~~~~~~~~~~i~~l-~L~~iLF~~   74 (562)
T PRK05326          8 LLIGALLLLLSILASRLSSR---LGIPSLLLFLAIGMLAGEDGLG---------GIQFDNYPLAYLVGNL-ALAVILFDG   74 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhCccccC---------CcccCcHHHHHHHHHH-HHHHHHHcC
Confidence            33445566677777777643   4899999999999999963211         011111    122222 24544    


Q ss_pred             HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          101 LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       101 g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      |++++ +.+|+++++++.+|++|+++++..+|...++.      .+++|..|+++||++|+|||++|.+++++.+
T Consensus        75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l------~g~~~~~alllgai~s~Td~a~v~~iL~~~~  143 (562)
T PRK05326         75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL------LGLDWLEGLLLGAIVGSTDAAAVFSLLRGKG  143 (562)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHhhhhccCchHHHHHHHhccC
Confidence            99999 99999999999999999999999999888775      3789999999999999999999999999876

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.29  E-value=6.2e-11  Score=105.90  Aligned_cols=123  Identities=22%  Similarity=0.389  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHH---HHHHHH----HHhhc-
Q 037375           34 MMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVA---TCLLMI----LFSWQ-  105 (183)
Q Consensus        34 ~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~---l~LP~i----g~~l~-  105 (183)
                      ++.+.+++.+.+..  | .++|--.+++.+|++.|.        +++ ..++||..-+-+.   ++|-.|    |+.++ 
T Consensus        14 vlvivsif~s~~ss--r-fGvP~LllFl~iGm~aG~--------dGl-g~I~fdNy~~Ay~vg~lALaiILfdgG~~T~l   81 (574)
T COG3263          14 VLVIVSIFSSLISS--R-FGVPLLLLFLSIGMLAGV--------DGL-GGIEFDNYPFAYMVGNLALAIILFDGGFGTQL   81 (574)
T ss_pred             HHHHHHHHHHHHHH--H-cCchHHHHHHHHHHHcCC--------Ccc-cccccCccHHHHHHHHHHHHHHhhcCccCCcH
Confidence            45555666666643  2 589999999999999985        111 1234443222222   213333    89999 


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      +.||...+|-+.+|++||++|+..+|...+|.      .+++|.+++++||++.+||++||.+++++.|
T Consensus        82 ss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l------l~l~wle~~LiGAiVgSTDAAAVF~lL~~~n  144 (574)
T COG3263          82 SSFRVAAGPALSLATLGVLITSGLTGVAAAYL------LNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN  144 (574)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence            99999999999999999999999999999997      5899999999999999999999999999876

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=98.87  E-value=3.4e-08  Score=83.12  Aligned_cols=122  Identities=11%  Similarity=0.208  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHH-HHhhc-hhHHhhHHH
Q 037375           38 LSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMI-LFSWQ-KPFFSNFGA  114 (183)
Q Consensus        38 l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~i-g~~l~-~~f~~n~~~  114 (183)
                      ++.+.+.+.|+   .++|+.+..++.|+++|... +..+..    +..+.=.++-..+  +-.. |+++| +++||+.+.
T Consensus         3 ~a~~~~~l~~~---l~lP~~v~~il~GillGp~~lg~i~~~----~~~~~l~~igl~~--llF~~Gl~~d~~~l~~~~~~   73 (273)
T TIGR00932         3 AAVLAVPLSRR---LGIPSVLGYLLAGVLIGPSGLGLISNV----EGVNHLAEFGVIL--LMFLIGLELDLERLWKLRKA   73 (273)
T ss_pred             HHHHHHHHHHH---hCCCHHHHHHHHHHHhCcccccCCCCh----HHHHHHHHHHHHH--HHHHHHhCCCHHHHHHHHHH
Confidence            45566777643   57999999999999999632 211110    0001001111111  1111 99999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          115 IVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       115 Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      ....+..++.++.+.+|...++.      .++++..|+++|+++|+|||..+..+++|.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~  127 (273)
T TIGR00932        74 AFGVGVLQVLVPGVLLGLLLGHL------LGLALGAAVVIGIILALSSTAVVVQVLKERG  127 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence            99999999999878778765554      3789999999999999999999999999886

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=98.65  E-value=5e-09  Score=91.48  Aligned_cols=122  Identities=19%  Similarity=0.327  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH----HHhhc-hhHHhhHH
Q 037375           39 SFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI----LFSWQ-KPFFSNFG  113 (183)
Q Consensus        39 ~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i----g~~l~-~~f~~n~~  113 (183)
                      +.+..+..|  | .++|+....++.|+++|......-+.+      +-+.+.+..+- ++.+    |+++| +.+||+++
T Consensus         8 ~~~~~~l~~--r-~~iP~~i~~i~~Gi~lg~~~~~~~~~~------~~~~~~l~~i~-l~~llF~~G~~~d~~~l~~~~~   77 (380)
T PF00999_consen    8 AFVAGILFR--R-LGIPSIIGYILVGIVLGPSGLGLLEPD------NPSFELLAEIG-LAFLLFEAGLELDIKELRRNWR   77 (380)
T ss_dssp             -------------------------------------------------S-SSHHHH-S--SSHHHHTTGGGG-------
T ss_pred             HHHHHHHHH--H-hCCCHHHHHHHheeehhhhhhhhccch------hhHHHHHHHHH-HHHHHHHHHHhhcccccccccc
Confidence            434444443  2 569999999999999998653311100      01112222222 3333    99999 99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhc
Q 037375          114 AIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGT  173 (183)
Q Consensus       114 ~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l  173 (183)
                      +.+..+..++.++...++...++..   ...++++.+++++|++.++|||+.+.++++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~  134 (380)
T PF00999_consen   78 RALALGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKEL  134 (380)
T ss_dssp             ---------------------------------------TTHHHHTT--HHHHHHHH-HH
T ss_pred             cccccccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhh
Confidence            9999999999999888788777411   13589999999999999999999999999654

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=98.19  E-value=3.5e-05  Score=72.24  Aligned_cols=126  Identities=12%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcc-ccccccccccccccccchhHHHHHHHHH-HHHHhhc-hhHH
Q 037375           33 IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSAL-TNISNTETNIRYSFSFNELICSVATCLL-MILFSWQ-KPFF  109 (183)
Q Consensus        33 i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i-~~~~~~~~~~~~~~~~~~~~f~~~l~LP-~ig~~l~-~~f~  109 (183)
                      ++++..+.+..++.|+   .++|..+..++.|+++|.- .......+    .+..=.++ -.++ +. .+|.+++ ++++
T Consensus        11 ~~~l~~a~~~~~l~~r---l~~p~ilg~ilaGillGP~~lg~i~~~~----~i~~lael-Gvv~-LLF~iGLel~~~~l~   81 (601)
T PRK03659         11 VLFLFAAVVAVPLAQR---LGIGAVLGYLLAGIAIGPWGLGFISDVD----EILHFSEL-GVVF-LMFIIGLELNPSKLW   81 (601)
T ss_pred             HHHHHHHHHHHHHHHH---hCCChHHHHHHHHHHhccccccCCCcHH----HHHHHHHH-HHHH-HHHHHHhcCCHHHHH
Confidence            4455566666777653   5799999999999999962 22211100    01100111 1111 11 1299999 9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          110 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       110 ~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      +..+.++.++..++++++.+.+...++.       +++|..++++|..++.|+++-+..+++|.+
T Consensus        82 ~~~~~~~~~g~~~v~~t~~~~~~~~~~~-------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~  139 (601)
T PRK03659         82 QLRRSIFGVGAAQVLLSAAVLAGLLMLT-------DFSWQAAVVGGIGLAMSSTAMALQLMREKG  139 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999988777766553       678999999999999999999999999986

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=98.15  E-value=4.7e-05  Score=71.66  Aligned_cols=130  Identities=12%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHHHHhhc-hh
Q 037375           30 LLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KP  107 (183)
Q Consensus        30 ~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~  107 (183)
                      .-.++++..+.+...+.|+   .++|.-+..++.|+++|.-. ......    +.+..=.++-..++ +=.+|.+++ ++
T Consensus         8 ~~~~~~l~~a~i~~~l~~r---l~lp~vlgyilaGillGP~~lg~i~~~----~~i~~laelGvv~L-lF~iGLEl~~~~   79 (621)
T PRK03562          8 IQALIYLGAAVLIVPIAVR---LGLGSVLGYLIAGCIIGPWGLRLVTDV----ESILHFAEFGVVLM-LFVIGLELDPQR   79 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHH---hCCChHHHHHHHHHHhCcccccCCCCH----HHHHHHHHHHHHHH-HHHHHhCcCHHH
Confidence            3344566667777888753   57999999999999999632 211110    00110012211111 112299999 99


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          108 FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       108 f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      +++..+.++.++...+.+++...+...+++       +++|..++++|+.++.|.+.-++.+++|.+
T Consensus        80 l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~-------g~~~~~al~ig~~la~SStaiv~~~L~e~~  139 (621)
T PRK03562         80 LWKLRRSIFGGGALQMVACGGLLGLFCMLL-------GLRWQVALLIGLGLALSSTAIAMQAMNERN  139 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887776665553       688999999999999999998999999876

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.98  E-value=0.0002  Score=66.32  Aligned_cols=126  Identities=18%  Similarity=0.278  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhH--HHHHHHHHH-HHHhhc-
Q 037375           31 LQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELI--CSVATCLLM-ILFSWQ-  105 (183)
Q Consensus        31 ~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~--f~~~l~LP~-ig~~l~-  105 (183)
                      .+...+..+.+..++.|+   .++|.-+..++.|+++|... +....      . +.-+.+  +-.++ +.. +|.+++ 
T Consensus        10 ~~~~~l~~a~~~~~l~~r---l~~P~ivg~IlaGillGp~~lg~~~~------~-~~~~~la~lGli~-llF~~Gle~d~   78 (558)
T PRK10669         10 TIVGGLVLAFILGMLANR---LRISPLVGYLLAGVLAGPFTPGFVAD------T-KLAPELAELGVIL-LMFGVGLHFSL   78 (558)
T ss_pred             HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHhhCccccccccc------h-HHHHHHHHHHHHH-HHHHhHhcCCH
Confidence            335556667777888753   57999999999999999732 21110      0 111111  11111 111 299999 


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      +.++++.......+..+++.+ ..++...++.      .++++..++.+|+++|.|.+..|..+++|.+
T Consensus        79 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~  140 (558)
T PRK10669         79 KDLMAVKSIAIPGAIAQIAVA-TLLGMALSAV------LGWSLMTGIVFGLCLSTASTVVLLRALEERQ  140 (558)
T ss_pred             HHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999887654444444444443 3444444332      3689999999999999999999999999876

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=97.97  E-value=0.00023  Score=62.59  Aligned_cols=123  Identities=22%  Similarity=0.330  Sum_probs=88.8

Q ss_pred             HHHHHHHhcccccCchhHHHHHHhhHhhccc-ccccccc-ccccccccchhHHHHHHHHHHH--HHhhc-hhHHhhHHHH
Q 037375           41 ILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTET-NIRYSFSFNELICSVATCLLMI--LFSWQ-KPFFSNFGAI  115 (183)
Q Consensus        41 l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~-~~~~~~~~~~~~f~~~l~LP~i--g~~l~-~~f~~n~~~I  115 (183)
                      +.+.++|.|  ..+.|+.+..+.|+++|.-. +..++.. +-.+.  +..|+-=.++|.-.+  +.+++ +++.+||..+
T Consensus        27 l~S~yikek--LllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~--it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si  102 (467)
T KOG4505|consen   27 LASLYIKEK--LLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDY--ITYEISRVVLCVQVFAVAMELPRAYMLEHWRSI  102 (467)
T ss_pred             HHHHHHHHh--HhccchHHhhhhheeechhhhhhcCCccccCcch--hhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHH
Confidence            345555543  67999999999999999743 3322210 00001  112222233333334  88999 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhh
Q 037375          116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG  172 (183)
Q Consensus       116 l~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~  172 (183)
                      ..+-.+-..+-.++.+...|.+     .+++++..+++.+|.+.||||+-..++.++
T Consensus       103 ~vlllpVmi~gwlvs~~fvy~l-----~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~  154 (467)
T KOG4505|consen  103 FVLLLPVMIIGWLVSFGFVYAL-----IPNLNFLTSLLIAACITATDPILSSSIVGG  154 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHccCCchhHHHHHhcC
Confidence            9888777888888888889887     469999999999999999999999888874

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=97.89  E-value=0.00021  Score=63.90  Aligned_cols=133  Identities=21%  Similarity=0.331  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhc-cccccccccccccccccchhHHHHHHHHHHHHHhhc-h
Q 037375           29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSA-LTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-K  106 (183)
Q Consensus        29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~-i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~  106 (183)
                      +.....++..+.+.+++.||   .++|.-...++.|+++|. ......+.+   +.+++=.|+=..++ +..+|.+.| +
T Consensus         8 l~~~~iiL~~a~i~~~l~~r---l~lp~vlg~llaGiilGp~~~~~~~~~~---~~i~~laelGvi~L-lF~~GLE~~~~   80 (397)
T COG0475           8 LLQLLILLLVAVILGPLFKR---LGLPPVLGYLLAGIILGPWGLLLIIESS---EIIELLAELGVVFL-LFLIGLEFDLE   80 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHhcCcccccccCCch---HHHHHHHHHhHHHH-HHHHHHCcCHH
Confidence            34455566777788888754   579999999999999997 221111111   12222223222222 223399999 9


Q ss_pred             hHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          107 PFFSNFGAI-VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       107 ~f~~n~~~I-l~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      ++||+.+.+ ...+..+..... ..+...+..     ..++++..++..|++++.|...-+..+++|.|
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-----~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~  143 (397)
T COG0475          81 RLKKVGRSVGLGVAQVGLTAPF-LLGLLLLLG-----ILGLSLIAALFLGAALALSSTAIVLKILMELG  143 (397)
T ss_pred             HHHHhchhhhhhHHHHHHHHHH-HHHHHHHHH-----HhccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999995 344433333321 222222210     14799999999999999999999999999987

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=97.09  E-value=0.016  Score=56.53  Aligned_cols=135  Identities=15%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccc-cccc---c--ccccchhHHHHHHHHHHH-HHhh
Q 037375           33 IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTE-TNIR---Y--SFSFNELICSVATCLLMI-LFSW  104 (183)
Q Consensus        33 i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~-~~~~---~--~~~~~~~~f~~~l~LP~i-g~~l  104 (183)
                      .++++++.+..+++|+   .+.|.-+.-++.|+++|.-. ...... +...   .  .++.=.++ -+++ +..+ |.++
T Consensus        49 ~lil~~a~l~~~ll~r---l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~l-Glil-lmFliGLE~  123 (832)
T PLN03159         49 TLVVVTTRLLVFILKP---FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANL-GLLY-FLFLVGVEM  123 (832)
T ss_pred             HHHHHHHHHHHHHHHh---cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHH-HHHH-HHHHHHHcC
Confidence            4455666677777653   47999999999999999622 211100 0000   0  00000111 1111 1112 9999


Q ss_pred             c-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-CCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          105 Q-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYR-LPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       105 ~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~-~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      | +.+||+.+..+..+..+.++.........+++..  ...+ .....++.+|..+|.|...-+..+++|++
T Consensus       124 Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~--~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk  193 (832)
T PLN03159        124 DISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ--VSRNVHQGTFILFLGVALSVTAFPVLARILAEIK  193 (832)
T ss_pred             cHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence            9 9999999999999998888865443333333311  0111 12345678899999998888888998876

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.66  E-value=3.1  Score=39.23  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=41.9

Q ss_pred             HHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHH
Q 037375           92 SVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITV  166 (183)
Q Consensus        92 ~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAV  166 (183)
                      .-++ +|.+    |.++| +.+.+++..++.+....++.-...+.....+       .++++.+++.+|..+++.-..+.
T Consensus       267 ~~ll-l~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~-------~g~~~~~al~~g~~L~~~Gef~~  338 (601)
T PRK03659        267 KGLL-LGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL-------YGLRSSERMQFAGVLSQGGEFAF  338 (601)
T ss_pred             HHHH-HHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhccccHHH
Confidence            3444 5554    99999 8888887766554443333333333333332       47899999998888877665553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.82  E-value=3.4  Score=39.17  Aligned_cols=67  Identities=12%  Similarity=0.012  Sum_probs=42.0

Q ss_pred             HHHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHH
Q 037375           91 CSVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPIT  165 (183)
Q Consensus        91 f~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVA  165 (183)
                      |..++ +|.+    |.++| ..+.+++..++.+.....+.-.+.+....++       .++++.+++.+|.++++--..+
T Consensus       269 f~~ll-l~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-------~g~~~~~a~~~gl~L~~~Gef~  340 (621)
T PRK03562        269 FKGLL-LGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-------LGVPRKQRRWFAVLLGQGGEFA  340 (621)
T ss_pred             HHHHH-HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHhccccHH
Confidence            33444 5554    99999 8888877776555443333333333333333       4788999999998888655544

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=90.81  E-value=3.2  Score=37.46  Aligned_cols=113  Identities=22%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhc----ccccCchhHHHHHHhhHhhccccccccccccccccccc---hhHHHHHHHHHHHHHhhc-
Q 037375           34 MMLVLSFILGHVLRRH----KFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFN---ELICSVATCLLMILFSWQ-  105 (183)
Q Consensus        34 ~ll~l~~l~~~~~~~~----~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~---~~~f~~~l~LP~ig~~l~-  105 (183)
                      .+.++-.+.++++++|    +..-+||++.-=.+..+++...+-....     +++||   ++.|++++ +--+|++-+ 
T Consensus        12 ~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~-----~~~fd~~l~~~fmliF-Fttiglsa~~   85 (404)
T COG0786          12 ILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGV-----SLNFDTSLQDVFMLIF-FATIGLSASF   85 (404)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceE-----EEeCCcccccHHHHHH-HHHhccccch
Confidence            3334444555555433    3467999998877777777655422211     12333   36777777 666799988 


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccccCCHHHHHHhhhhc
Q 037375          106 KPFFSNFGAIVTFAIFGTFLASMV--TGILVYLGGVMFVMYRLPFVECLMFGALI  158 (183)
Q Consensus       106 ~~f~~n~~~Il~lA~~Gt~is~~~--~g~~~~~~~~~~~~~~~~l~~allfGAii  158 (183)
                      +.++|-.++..++-..+..+...-  +|..+...      .+++....++-|++-
T Consensus        86 ~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~------lgidpl~gllagsIs  134 (404)
T COG0786          86 KLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKL------LGLDPLIGLLAGSIS  134 (404)
T ss_pred             hHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH------cCccHHHHHHhccee
Confidence            899999998887765555443332  22222221      356777777777654

>PRK04125 murein hydrolase regulator LrgA; Provisional

Probab=89.69  E-value=5.7  Score=30.82  Aligned_cols=43  Identities=14%  Similarity=-0.089  Sum_probs=34.7

Q ss_pred             HHHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037375           97 LLMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGV  139 (183)
Q Consensus        97 LP~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~  139 (183)
                      .|.- |.=.. ..+++++.+++.--+++|+++..++|....++.+
T Consensus        74 VPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r  118 (141)
T PRK04125         74 VPSGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFILG  118 (141)
T ss_pred             hhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 66556 7999999999999999999999999988877543

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=88.79  E-value=4.3  Score=35.70  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             CchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH--H----HhhchhHHhhHHHHHHHHHHHHHHHH
Q 037375           54 LPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI--L----FSWQKPFFSNFGAIVTFAIFGTFLAS  127 (183)
Q Consensus        54 lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i--g----~~l~~~f~~n~~~Il~lA~~Gt~is~  127 (183)
                      ...++.+++-|+++|.+..-...    .+.-.|-.+.|..++|+=.+  |    .+++ ++|+.-+....++++.=++.+
T Consensus       176 ~~~sv~LLlGgliIG~~~g~~g~----~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~-~l~~~g~~li~Fgi~~Pli~a  250 (327)
T PF05982_consen  176 TNKSVVLLLGGLIIGFLAGPEGV----ESIKPFFVDLFKGVLCLFLLEMGLVAARRLR-DLRKVGWFLIAFGILMPLINA  250 (327)
T ss_pred             cCchHHHHHHHHHHhheeCccch----hhccchhhccHHHHHHHHHHHhhHHHHHhhH-HHHhhhHHHHHHHHHHHHHHH
Confidence            45678899999999997643221    11113445677777655554  3    4444 889999999999988877776


Q ss_pred             HHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHh----hcCcccc
Q 037375          128 MVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ----GTCALLF  178 (183)
Q Consensus       128 ~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~----~l~a~l~  178 (183)
                      .+--...|+.       +++...+.+++.+-++--=.||=+..|    |.|+.+|
T Consensus       251 ~ig~~lg~~~-------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpsly  298 (327)
T PF05982_consen  251 LIGIGLGWLL-------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLY  298 (327)
T ss_pred             HHHHHHHHHh-------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHH
Confidence            6555555543       788889999998876655455555554    4444444

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.31  E-value=14  Score=34.38  Aligned_cols=63  Identities=11%  Similarity=0.084  Sum_probs=36.6

Q ss_pred             HHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHH
Q 037375           97 LLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITV  166 (183)
Q Consensus        97 LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAV  166 (183)
                      .|.+    |.++| ..+.++...++.+..+..+.-.........       ..+.++.+++..|..+++.-..+.
T Consensus       282 ~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-------~~g~~~~~a~~~gl~l~~~Gef~l  349 (558)
T PRK10669        282 AVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-------LFGHSRRTALTIAASLAQIGEFAF  349 (558)
T ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCChhhHHHHHHHHhcccchHH
Confidence            5554    99999 888877655443322222222222212222       247889999999998887655443

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=87.94  E-value=12  Score=33.26  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchh---HHHHHHHHHHHHHhhc
Q 037375           29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNEL---ICSVATCLLMILFSWQ  105 (183)
Q Consensus        29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~---~f~~~l~LP~ig~~l~  105 (183)
                      +.+..+++.++..+-.-.+--+...+|.++.-=+++.++....+....     -.+++|..   .++..+ +--+|++.+
T Consensus         9 l~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~-----~~~~f~~~l~~~lm~~f-F~~igL~~~   82 (368)
T PF03616_consen    9 LALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGG-----ISISFDTSLQDFLMIIF-FTTIGLGAS   82 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCc-----eEEEechhHHHHHHHHH-HHHHhhccc
Confidence            334444444444443222222457899998877776666544432221     12344433   333333 333477777


Q ss_pred             -hhHHhhHHHHHHHHHHHH
Q 037375          106 -KPFFSNFGAIVTFAIFGT  123 (183)
Q Consensus       106 -~~f~~n~~~Il~lA~~Gt  123 (183)
                       +..+|-.+.+..+...++
T Consensus        83 ~~~lkkgg~~~~~~~~~~~  101 (368)
T PF03616_consen   83 LKLLKKGGKAVLIFLLIAI  101 (368)
T ss_pred             hhhHHhhHHHHHHHHHHHH
Confidence             777777766666554443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.44  E-value=13  Score=31.12  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH---H--Hhhc
Q 037375           31 LQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI---L--FSWQ  105 (183)
Q Consensus        31 ~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i---g--~~l~  105 (183)
                      +.+++-++....+..+ .+|+++.+-..+++...+++..+....-+-+    ...-+.+.....+ =|-.   +  ..-+
T Consensus         9 f~l~lTl~~y~~a~~l-~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~----~Y~~g~~~i~~lL-gPAtVAlAvPLYkq   82 (230)
T COG1346           9 FGLLLTLLAYFAAKRL-YKRTKSPFLNPLLVATVLLIAFLLLFGISYE----DYMKGGQWINFLL-GPATVALAVPLYKQ   82 (230)
T ss_pred             HHHHHHHHHHHHHHHH-HHhcCCcccchHHHHHHHHHHHHHHcCCCHH----HHhcccHHHHHHH-HHHHHHHhhHHHHH
Confidence            3344444444444444 2344444444555555555554332111100    1111234444444 3433   2  2234


Q ss_pred             -hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375          106 -KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG  137 (183)
Q Consensus       106 -~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~  137 (183)
                       +.+||||.+|+.=-++|+..+........+++
T Consensus        83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~  115 (230)
T COG1346          83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF  115 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             78999999999888889888777666666665

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=86.43  E-value=6.7  Score=31.78  Aligned_cols=82  Identities=20%  Similarity=0.276  Sum_probs=42.6

Q ss_pred             HHHHHhhHhhccccccccccccccccccchhHHHHHHH--HHHHHHhhc------hhHHhhHHHHHHHHHHHHHHHHHHH
Q 037375           59 ASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATC--LLMILFSWQ------KPFFSNFGAIVTFAIFGTFLASMVT  130 (183)
Q Consensus        59 ~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~--LP~ig~~l~------~~f~~n~~~Il~lA~~Gt~is~~~~  130 (183)
                      ..++.|++.|.......         +..++.....+.  +-.+|.++.      |++++.-++.+..++ .+++.++..
T Consensus         3 ~~li~Gi~lG~~~~~~~---------~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl-~tIlGSllg   72 (191)
T PF03956_consen    3 IALILGILLGYFLRPPF---------SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPL-ATILGSLLG   72 (191)
T ss_pred             eeHHHHHHHHHHhcccc---------cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence            34677888888654321         111222222221  112266543      344433345554443 556666666


Q ss_pred             HHHHHHHhhhhccccCCHHHHHHhhh
Q 037375          131 GILVYLGGVMFVMYRLPFVECLMFGA  156 (183)
Q Consensus       131 g~~~~~~~~~~~~~~~~l~~allfGA  156 (183)
                      |.....+      .++|+.+|+..||
T Consensus        73 g~l~~~l------l~~~~~~~lav~s   92 (191)
T PF03956_consen   73 GLLASLL------LGLSLKESLAVAS   92 (191)
T ss_pred             HHHHHHH------hcCCHHHHHHHHc
Confidence            6666654      3778888777665

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=86.39  E-value=6.6  Score=38.64  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=18.0

Q ss_pred             ccCCHHHHHHhhhhccCccHHH
Q 037375          144 YRLPFVECLMFGALISATDPIT  165 (183)
Q Consensus       144 ~~~~l~~allfGAiiSaTDPVA  165 (183)
                      .++|+.+++..|.++++.-=+.
T Consensus       375 ~g~~~~eal~lG~lm~~kG~~~  396 (832)
T PLN03159        375 YTMPFREGITLGFLMNTKGLVE  396 (832)
T ss_pred             hCCCHHHHHHHHHHHhcccHHH
Confidence            4899999999999998865444

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=85.74  E-value=22  Score=30.85  Aligned_cols=109  Identities=12%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             ccccCchhHHHHHHhhHhhc-cccccccccccccccccchhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHH
Q 037375           50 KFYYLPEASASLLIGLIVSA-LTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLAS  127 (183)
Q Consensus        50 ~~~~lp~s~~lil~Gl~~G~-i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~  127 (183)
                      ....++.....+++|++++- .......   .....++..+.+.-.= .-.+|.+++ .+..+--...+....+.+..+.
T Consensus        22 ~~~~l~~~~~AillG~~i~n~~~~~~~~---~~~Gi~~~~k~~Lr~g-IVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~   97 (305)
T PF03601_consen   22 FLPGLGALLIAILLGMLIGNLFFGLPAR---FKPGIKFSSKKLLRLG-IVLLGFRLSFSDILALGWKGLLIIIIVVILTF   97 (305)
T ss_pred             cccCccHHHHHHHHHHHHhhhccCCcHH---HHhHHHHHHHHHHHHH-HHHHCccccHHHHHHhCccHHHHHHHHHHHHH
Confidence            45789999999999999994 4433221   1122344433322111 123399999 8888765555544444333322


Q ss_pred             HHHHHHHHHHh-hhhccccCCHHHHHHhhhhccCccHHHHHHH
Q 037375          128 MVTGILVYLGG-VMFVMYRLPFVECLMFGALISATDPITVLSI  169 (183)
Q Consensus       128 ~~~g~~~~~~~-~~~~~~~~~l~~allfGAiiSaTDPVAVlai  169 (183)
                          ...++++ +   ..+++...+.+.|+=.|==+.-|+.|+
T Consensus        98 ----~~~~~lg~r---~~~l~~~~~~Lia~GtsICG~SAi~A~  133 (305)
T PF03601_consen   98 ----LLTYWLGRR---LFGLDRKLAILIAAGTSICGASAIAAT  133 (305)
T ss_pred             ----HHHHHHHHH---HhCCCHHHHHHHHhhcccchHHHHHHH
Confidence                2344444 3   357788777777744333333333333

; GO: 0016021 integral to membrane

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.58  E-value=9.6  Score=33.72  Aligned_cols=127  Identities=20%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH--HHhhc-hhH
Q 037375           32 QIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI--LFSWQ-KPF  108 (183)
Q Consensus        32 ~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i--g~~l~-~~f  108 (183)
                      ....++++.+.+.+..|   .++|+-+..++.|++.|........++      ++.+++--+-..+..+  |.+.+ |++
T Consensus        11 iv~gl~lAFl~G~lA~r---lrlsPLVGyL~AGv~~gpftpGFvad~------~La~~LAelGViLLmFgvGLhfslkdL   81 (408)
T COG4651          11 IVGGLVLAFLLGALANR---LRLSPLVGYLLAGVLAGPFTPGFVADQ------TLAPELAELGVILLMFGVGLHFSLKDL   81 (408)
T ss_pred             HHHHHHHHHHHHHHHHh---cCCCchHHHHHHHHhcCCCCCCcccch------hHHHHHHHhhHHHHHHhcchheeHHHH
Confidence            34567778788887533   469999999999999997543221111      3344442222213333  77777 776


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          109 FSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      ... +.   .|+.|.+.+.......-+.+.   +..+|++...++||=.+|--..|-.+--++|-+
T Consensus        82 Lav-k~---iAipgAl~qia~at~lg~gL~---~~lgws~~~glvfGlaLS~aSTVvllraLqEr~  140 (408)
T COG4651          82 LAV-KA---IAIPGALAQIALATLLGMGLS---SLLGWSFGTGIVFGLALSVASTVVLLRALEERQ  140 (408)
T ss_pred             hhH-HH---HhcchHHHHHHHHHHHHhHHH---HHcCCCcccceeeeehhhhHHHHHHHHHHHHhc
Confidence            542 22   344554443332222222111   135899999999997777655565555555543

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=85.21  E-value=17  Score=34.12  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcccccCch--hHHHHHHhhHhhccccccccccccccccccchhH---HHHHHHHHHHHHhhc----
Q 037375           35 MLVLSFILGHVLRRHKFYYLPE--ASASLLIGLIVSALTNISNTETNIRYSFSFNELI---CSVATCLLMILFSWQ----  105 (183)
Q Consensus        35 ll~l~~l~~~~~~~~~~~~lp~--s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~---f~~~l~LP~ig~~l~----  105 (183)
                      .+.+++.+++++-+.|+.++.-  ....+..|+++|.+-.            ++++++   ++..| .=.+||+.-    
T Consensus        14 ~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~------------~i~~~v~~~gl~lF-vy~vG~~~Gp~Ff   80 (562)
T TIGR03802        14 ALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI------------QIDPGVKAVFFALF-IFAIGYEVGPQFF   80 (562)
T ss_pred             HHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC------------CCChHHHHHHHHHH-HHHhhhccCHHHH
Confidence            3444555666665555544443  3677778999997521            233332   22222 112266543    


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccC
Q 037375          106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISA  160 (183)
Q Consensus       106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSa  160 (183)
                      +.+||+-.+...+|++-++....++-...|+.     ..+.+....++=||+-+.
T Consensus        81 ~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~-----g~~~~~~~Gl~aGalT~t  130 (562)
T TIGR03802        81 ASLKKDGLREIILALVFAVSGLITVYALAKIF-----GLDKGTAAGLAAGGLTQS  130 (562)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHhchhhcc
Confidence            35555555666677655555444433344433     345666777777777643

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=83.95  E-value=24  Score=29.58  Aligned_cols=49  Identities=10%  Similarity=-0.039  Sum_probs=33.5

Q ss_pred             hhHHHHHHHHHHH---HH--hhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375           88 ELICSVATCLLMI---LF--SWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG  137 (183)
Q Consensus        88 ~~~f~~~l~LP~i---g~--~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~  137 (183)
                      .+.+...+ =|-.   ++  .-+ +.+|||+.+|+.=-++|...+.+..-...+++
T Consensus        64 ~~~l~~lL-gPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l  118 (232)
T PRK04288         64 GDIISFFL-EPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI  118 (232)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555 4544   32  234 78999999999888888888777666666664

>COG2855 Predicted membrane protein [Function unknown]

Probab=83.86  E-value=30  Score=30.60  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             cCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHH
Q 037375           53 YLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTG  131 (183)
Q Consensus        53 ~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g  131 (183)
                      .+|.....+++|+++|........-   ..-++|......-+= --.+|++++ .++.+--.+.+. ....++.+++.. 
T Consensus        36 ~l~al~lAIllGi~l~~l~~~~~~~---~~GI~fs~k~LLr~g-IvLlG~~ltl~~i~~~G~~~v~-~~~~~l~~t~~~-  109 (334)
T COG2855          36 GLSALTLAILLGILLGILPQIPAQT---SAGITFSSKKLLRLG-IVLLGFRLTLSDIADVGGSGVL-IIAITLSSTFLF-  109 (334)
T ss_pred             CchHHHHHHHHHHHHhccccchhhh---ccchhhhHHHHHHHH-HHHHcceeeHHHHHHcCccHHH-HHHHHHHHHHHH-
Confidence            4889999999999999655443211   123556554332221 112399998 777764444433 333445555533 


Q ss_pred             HHHHHHhhhhccccCCHHHHHHhhh
Q 037375          132 ILVYLGGVMFVMYRLPFVECLMFGA  156 (183)
Q Consensus       132 ~~~~~~~~~~~~~~~~l~~allfGA  156 (183)
                        .|++++   ..++++..+++.|+
T Consensus       110 --~~~lg~---~lgld~~~a~Lia~  129 (334)
T COG2855         110 --AYFLGK---LLGLDKKLALLIAA  129 (334)
T ss_pred             --HHHHHH---HhCCCHHHHHHHHc
Confidence              333333   35889988888873

>PRK01658 holin-like protein; Validated

Probab=83.56  E-value=17  Score=27.41  Aligned_cols=40  Identities=20%  Similarity=0.063  Sum_probs=33.0

Q ss_pred             HHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375           98 LMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG  137 (183)
Q Consensus        98 P~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~  137 (183)
                      |.- |.--. ..+++|+.+++.--+++|+++..++|....+.
T Consensus        72 Pa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l  113 (122)
T PRK01658         72 PSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLL  113 (122)
T ss_pred             HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 65555 78999999999999999999999999887765

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=82.07  E-value=27  Score=31.51  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHhc---ccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHH-Hhhc-hhH
Q 037375           34 MMLVLSFILGHVLRRH---KFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMIL-FSWQ-KPF  108 (183)
Q Consensus        34 ~ll~l~~l~~~~~~~~---~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig-~~l~-~~f  108 (183)
                      .++.++...++.+.+.   .-..+|.=+..++.|+++--+.......+-..+.++.-.++..-++  .-.+ -+++ ...
T Consensus       222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlf--l~~AlmsL~L~~l  299 (398)
T TIGR00210       222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLF--LAIALMSLQLWEL  299 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH--HHHHHHhCcHHHH
Confidence            3444444444444221   1256898888888888776655432211100000111111211111  1112 4677 899


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375          109 FSNFGAIVTFAIFGTFLASMVTGILVYL  136 (183)
Q Consensus       109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~  136 (183)
                      .+++.|++.+.+.+++++....-...+-
T Consensus       300 ~~~a~Plliil~~q~i~~~l~~~fv~fr  327 (398)
T TIGR00210       300 ADLAGPIALILLVQVMFMALYAIFVTFR  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999987654444443

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=80.09  E-value=45  Score=30.07  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhH---HHHHHHHHHHHHhhc
Q 037375           29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELI---CSVATCLLMILFSWQ  105 (183)
Q Consensus        29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~---f~~~l~LP~ig~~l~  105 (183)
                      +.+.++++.++..+-...+--+...+|+++.-=+++.+.-.+.+....     ..++||.++   ++.++ +--+|+.-+
T Consensus         9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~-----~~~~fd~~l~~~lm~~f-FatigLga~   82 (398)
T TIGR00210         9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFG-----TEVNFDFSLRDPLMLIF-FTTIGLSAN   82 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhcc-----EEEEcChhHHHHHHHHH-HHHhhhcCC
Confidence            344444555555443333322446799998765554211111111110     123455443   33333 333478878


Q ss_pred             -hhHHhhHHHHHHHHHHHHHH
Q 037375          106 -KPFFSNFGAIVTFAIFGTFL  125 (183)
Q Consensus       106 -~~f~~n~~~Il~lA~~Gt~i  125 (183)
                       +..||..+++..+....+..
T Consensus        83 ~~~l~~gg~~l~~~~~~~~~l  103 (398)
T TIGR00210        83 FKSLLKGGKPLLIFLATAVGF  103 (398)
T ss_pred             hHHHHhChHHHHHHHHHHHHH
Confidence             78888888887766654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	2e-04

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Length = 33

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 19/22 (86%)

Query: 150 ECLMFGALISATDPITVLSIFQ 171
           + L+FG++ISA DP+ VL++F+
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFE 26

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	99.08
1y4e_A	27	Sodium/hydrogen exchanger 1; NHE1 isoform, transme	94.21

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=99.08  E-value=7.1e-12  Score=73.07  Aligned_cols=28  Identities=39%  Similarity=0.736  Sum_probs=26.3

Q ss_pred             CHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375          147 PFVECLMFGALISATDPITVLSIFQGTC  174 (183)
Q Consensus       147 ~l~~allfGAiiSaTDPVAVlai~~~l~  174 (183)
                      +|.+|++|||++||||||||+++||+++
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~   29 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIH   29 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcC
Confidence            5678999999999999999999999987

>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}

Probab=94.21  E-value=0.0032  Score=34.52  Aligned_cols=19  Identities=11%  Similarity=-0.052  Sum_probs=17.1

Q ss_pred             cchhHHHHHHHHHHH----HHhhc
Q 037375           86 FNELICSVATCLLMI----LFSWQ  105 (183)
Q Consensus        86 ~~~~~f~~~l~LP~i----g~~l~  105 (183)
                      |++++||+++ ||||    ||+++
T Consensus         2 ~~~~~FF~~L-LPPII~~aGy~l~   24 (27)
T 1y4e_A            2 LQSDVFFLFL-LPPIILDAGYFLP   24 (27)
T ss_dssp             CCSCSSHHHH-SCCSSHHHHTTGG
T ss_pred             Cccceeeeec-cCccEeecccccc
Confidence            5789999999 9998    89988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00